BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033252
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15212|PFD6_HUMAN Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1
Length = 129
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANV-YKLIGPV 68
+Q++L+ + +LQKD+ K+ R+K QL EN +V +EL LL+ G+NV +KL+GPV
Sbjct: 5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLD-GSNVVFKLLGPV 63
Query: 69 LVKQDLAEANANVRKRIEYISAEL 92
LVKQ+L EA A V KR++YI+AE+
Sbjct: 64 LVKQELGEARATVGKRLDYITAEI 87
>sp|Q5TJE6|PFD6_CANFA Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1
Length = 129
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANV-YKLIGPV 68
+Q++L+ + +LQKD+ K+ R+K QL EN +V +EL LL+ G+NV +KL+GPV
Sbjct: 5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLD-GSNVVFKLLGPV 63
Query: 69 LVKQDLAEANANVRKRIEYISAEL 92
LVKQ+L EA A V KR++YI+AE+
Sbjct: 64 LVKQELGEARATVGKRLDYITAEI 87
>sp|Q17Q89|PFD6_BOVIN Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1
Length = 129
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANV-YKLIGPV 68
+Q++L+ + +LQKD+ K+ R+K QL EN +V +EL LL+ G+NV +KL+GPV
Sbjct: 5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLD-GSNVVFKLLGPV 63
Query: 69 LVKQDLAEANANVRKRIEYISAEL 92
LVKQ+L EA A V KR++YI+AE+
Sbjct: 64 LVKQELGEARATVGKRLDYITAEI 87
>sp|Q03958|PFD6_MOUSE Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
Length = 127
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANV-YKLIGPV 68
+Q++L+ + +LQKD+ K+ R+K QL EN +V +EL LL+ G+NV +KL+GPV
Sbjct: 5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLD-GSNVVFKLLGPV 63
Query: 69 LVKQDLAEANANVRKRIEYISAEL 92
LVKQ+L EA A V KR++YI+AE+
Sbjct: 64 LVKQELGEARATVGKRLDYITAEI 87
>sp|Q9VW56|PFD6_DROME Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770
PE=2 SV=1
Length = 125
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 3 SAAALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVY 62
SAA +++Q E+E+ N LQK K + R QL EN+ VL EL LL VY
Sbjct: 5 SAALYKKMQAEIESYQN----LQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVY 60
Query: 63 KLIGPVLVKQDLAEANANVRKRIEYISAELYVSS 96
KL GPVLVKQ+L E+ NV KRIEYIS EL S+
Sbjct: 61 KLFGPVLVKQELEESRQNVGKRIEYISKELKSST 94
>sp|A8Y197|PFD6_CAEBR Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6
PE=3 SV=1
Length = 128
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD 73
E + + L L+KD K R++ ++L E++ V EL L++ + VYKL+GPVLV+QD
Sbjct: 7 FEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQD 66
Query: 74 LAEANANVRKRIEYISAEL 92
L EA + V KR+E+I +E+
Sbjct: 67 LEEARSTVEKRLEFIESEI 85
>sp|P52554|PFD6_CAEEL Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6
PE=2 SV=1
Length = 126
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD 73
E + N L L+KD K R++ ++L E++ V EL L+ + VYKLIG VLV+QD
Sbjct: 7 FEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQD 66
Query: 74 LAEANANVRKRIEYISAE 91
L EA + V KR+E+I +E
Sbjct: 67 LEEARSTVEKRLEFIDSE 84
>sp|O14450|PFD6_SCHPO Probable prefoldin subunit 6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3A11.13 PE=3 SV=1
Length = 114
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 36 KKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
KK QL EN VL EL + +N+YK IGP LVKQ EA NV+ R+++I+ E+
Sbjct: 23 KKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTNVKTRLDFINKEI 79
>sp|Q54M71|PFD6_DICDI Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6
PE=3 SV=1
Length = 140
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 2 GSAAALRELQRELETKANDLSKL-QKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGAN 60
+ A ++++Q +L KA D ++ + ++ K R K QL ENE+V KE LL A
Sbjct: 10 PTQAEIQQIQDQL-IKARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAK 68
Query: 61 VYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
+YKL GPVL KQ EA + R++ I+ L
Sbjct: 69 IYKLNGPVLFKQTKEEAENTITSRLDIINNNL 100
>sp|P52553|PFD6_YEAST Prefoldin subunit 6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YKE2 PE=1 SV=1
Length = 114
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 34 VRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
R+K QL EN++V +E L E VYKL G VL+ + +EA NV KR+E+I E+
Sbjct: 21 ARQKLETQLQENKIVNEEFDQLEEDTPVYKLTGNVLLPVEQSEARTNVDKRLEFIETEI 79
>sp|Q8I3Y6|PFD6_PLAF7 Probable prefoldin subunit 6 OS=Plasmodium falciparum (isolate
3D7) GN=PFE0595w PE=3 SV=2
Length = 119
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 20 DLSKLQKDIGK-NHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEAN 78
D+S L+ K N Q+ + T Q ENE++L+E+ +L + + ++KL+G VLVK++ ++
Sbjct: 12 DISALKTSCEKLNSQLDELIT-QKVENEMLLEEVKVLEDDSVLHKLVGLVLVKEEKSKCY 70
Query: 79 ANVRKRIEYISAEL 92
+ +R++YI+ E+
Sbjct: 71 DTISRRLQYITGEI 84
>sp|Q9YC11|PFDB_AERPE Prefoldin subunit beta OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pfdB PE=3
SV=1
Length = 123
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 34 VRKKYTIQLG--ENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 91
+R+K T++ G E E VLKEL L E A +Y+L G VLVK+ E ++ KR E + +
Sbjct: 27 MREKATVEAGLAEVESVLKELEGLPEDAELYRLTGFVLVKKSKNEVVEDLNKRKEDLELK 86
Query: 92 LYV 94
L V
Sbjct: 87 LKV 89
>sp|Q9UXB8|PFDB_SULSO Prefoldin subunit beta OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C3NED4|PFDB_SULIY Prefoldin subunit beta OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C3NHB8|PFDB_SULIN Prefoldin subunit beta OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C3MVG9|PFDB_SULIM Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C3MQ51|PFDB_SULIL Prefoldin subunit beta OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C4KHE7|PFDB_SULIK Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|C3N5R8|PFDB_SULIA Prefoldin subunit beta OS=Sulfolobus islandicus (strain M.16.27)
GN=pfdB PE=3 SV=1
Length = 126
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 44 ENEL-----VLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97
ENEL VL+EL +LN A +YK++G +LVK D + R E + EL +Y
Sbjct: 34 ENELREINKVLEELSVLNADATIYKIVGNLLVKSDKTSVEKELNDRKELL--ELRSRTY 90
>sp|A5UNR1|PFDB_METS3 Prefoldin subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pfdB PE=3 SV=1
Length = 116
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 40 IQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88
+Q+ E+E L+EL +E A V+K G +L+K D A+A ++ +++E +
Sbjct: 33 VQIQESETALEELNKTDENAEVFKQAGNLLIKVDYAQAVEDMNEKLETL 81
>sp|Q8TYC7|PFDB_METKA Prefoldin subunit beta OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=pfdB PE=3 SV=1
Length = 120
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 35 RKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYV 94
+++ +QL E E LKEL + E VYK +G +L++ D E + R E + EL V
Sbjct: 26 KQQLELQLREIERALKELDEIEEDTKVYKTVGGLLIEADRDEVKEELEDRKETL--ELRV 83
Query: 95 SS 96
+
Sbjct: 84 KT 85
>sp|B6YTZ4|PFDB_THEON Prefoldin subunit beta OS=Thermococcus onnurineus (strain NA1)
GN=pfdB PE=3 SV=1
Length = 116
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 37 KYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92
K ++L E + L+E+ + EG +YK +G ++VK D A+A +++++E + L
Sbjct: 31 KVQLELTEAKKALEEIEKVEEGTVIYKTVGTLIVKTDKAKALEELKEKVETLEVRL 86
>sp|Q12ZB1|PFDB_METBU Prefoldin subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdB PE=3 SV=1
Length = 117
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 44 ENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYIS 89
E+E+ L+EL L++ A VY+ +G + ++ + + A +++R+E +S
Sbjct: 39 ESEMALEELEKLSDDAIVYRAVGDLQIQSNKDDTVAKLKERLETLS 84
>sp|B0V6N4|DADA_ACIBY D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AYE) GN=dadA PE=3 SV=1
Length = 421
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVYKLI 65
+ R E + L +L+KD G +++ R K T+QL + E V +++ +L E Y+L+
Sbjct: 108 MMRVAEYSRDCLRELRKDTGIHYENRAKGTLQLFRKEAQMEAVQRDISVLEECGVSYELL 167
Query: 66 -GPVLVKQDLAEANA 79
G L + + A ANA
Sbjct: 168 NGNELGRVEPALANA 182
>sp|B7I1Q9|DADA_ACIB5 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB0057) GN=dadA PE=3 SV=1
Length = 421
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVYKLI 65
+ R E + L +L+KD G +++ R K T+QL + E V +++ +L E Y+L+
Sbjct: 108 MMRVAEYSRDCLRELRKDTGIHYENRAKGTLQLFRKEAQMEAVQRDISVLEECGVSYELL 167
Query: 66 -GPVLVKQDLAEANA 79
G L + + A ANA
Sbjct: 168 NGNELGRVEPALANA 182
>sp|B7H2E9|DADA_ACIB3 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB307-0294) GN=dadA PE=3 SV=1
Length = 421
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVYKLI 65
+ R E + L +L+KD G +++ R K T+QL + E V +++ +L E Y+L+
Sbjct: 108 MMRVAEYSRDCLRELRKDTGIHYENRAKGTLQLFRKEAQMEAVQRDISVLEECGVSYELL 167
Query: 66 -GPVLVKQDLAEANA 79
G L + + A ANA
Sbjct: 168 NGNELGRVEPALANA 182
>sp|B0VNF5|DADA_ACIBS D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain SDF) GN=dadA PE=3 SV=1
Length = 421
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVYKLI 65
+ R E + L +L+KD G +++ R K T+QL + E V +++ +L E Y+L+
Sbjct: 108 MMRVAEYSRDCLRELRKDTGIHYENRAKGTLQLFRKEAQMEAVQRDISVLEECGVSYELL 167
Query: 66 -GPVLVKQDLAEANA 79
G L + + A ANA
Sbjct: 168 NGNELGRVEPALANA 182
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 8 RELQRELETKANDLSKLQKDIGKNHQV-------RKKYTIQLGENELVL----KELGLLN 56
+E+++EL +S L++ +N Q+ + KY+ L E+ L KELG L
Sbjct: 61 QEMEKELSASNKTISDLKR---RNEQLSGDLEDWKSKYSRALSEHNATLTTLQKELGQLR 117
Query: 57 EGANVYK 63
E ++YK
Sbjct: 118 ESVDIYK 124
>sp|Q2T284|METX_BURTA Homoserine O-acetyltransferase OS=Burkholderia thailandensis
(strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)
GN=metX PE=3 SV=1
Length = 381
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 59 ANVYKLIGPVLVKQDLAEA-NANVRKRIEYISAELYVSSYLVNWRF 103
AN Y LI L D A+A N N+ + + A+ V+S+ +WRF
Sbjct: 279 ANTYLLITRALDYFDPAKAFNGNLSAALAHTKAKYLVASFTTDWRF 324
>sp|Q975H2|PFDB_SULTO Prefoldin subunit beta OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=pfdB PE=3 SV=1
Length = 125
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQ 72
EL+T+ L +LQ + + + +L E +L+EL L G VYK++G +LVK
Sbjct: 8 ELQTQLVKLQQLQDQLNRLLTEKNVIDSELREVNKILQELSQLPAGTTVYKIVGNLLVKT 67
Query: 73 DLAEANANVRKRIEYISAELYVSSY 97
D + R E + EL +Y
Sbjct: 68 DKETVQKELDDRKEIL--ELRSRTY 90
>sp|Q46FZ5|PFDB_METBF Prefoldin subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pfdB PE=3 SV=1
Length = 117
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 44 ENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYIS 89
E+++ L ELG L + A VY+ +G +++K E+ ++ R E +S
Sbjct: 39 ESKMALDELGRLADDAVVYRNVGELVIKTSKEESITKLKDREETLS 84
>sp|P25651|CSM1_YEAST Monopolin complex subunit CSM1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CSM1 PE=1 SV=1
Length = 190
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 10 LQRELETKANDLSKLQKDIGK-NHQVR--KKYTIQLGENELVLKEL 52
L +L+TKA ++ +LQK I N QV+ K T Q EN V+K+L
Sbjct: 32 LSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDL 77
>sp|Q7Z3E2|CJ118_HUMAN Uncharacterized protein C10orf118 OS=Homo sapiens GN=C10orf118 PE=2
SV=2
Length = 898
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVY 62
LR+ +ELE N + +L ++ G+ HQ+ Y + GE +++E+ L E N +
Sbjct: 336 LRDANKELEKNTNKIKQLSQEKGRLHQL---YETKEGETTRLIREIDKLKEDINSH 388
>sp|Q6M0M5|PFDB_METMP Prefoldin subunit beta OS=Methanococcus maripaludis (strain S2 /
LL) GN=pfdB PE=3 SV=1
Length = 113
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 35 RKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYV 94
++++ QL E E ++E+ ++ V+K+ G +LVK++ AE + ++IE + +L V
Sbjct: 28 KQQFETQLKEMEKAIEEMEK-SDSEEVFKMAGGILVKRNKAEVKEELSEKIETL--QLRV 84
Query: 95 SSY 97
+++
Sbjct: 85 TTF 87
>sp|Q9LUB7|OBE2_ARATH Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1
Length = 574
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLI 65
AL RELE KA ++S+L+ + R+K +Q+ E E +++ L A++++L
Sbjct: 421 ALETCDRELEDKAKEVSELKAE-------RQKKKLQIDELERIVR---LKQAEADMFQL- 469
Query: 66 GPVLVKQDLAEANANVRKRIEYI----SAELYVSSYL 98
K + A+ A+ +RI S E Y S+YL
Sbjct: 470 -----KANEAKREADRLQRIVLAKMDKSEEEYASNYL 501
>sp|P38017|RS13_MYCSP 30S ribosomal protein S13 OS=Mycoplasma sp. GN=rpsM PE=3 SV=2
Length = 119
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 65 IGPVLVKQDLAEANANVRKRIEYISAE 91
IGP + KQ LA+AN + KR++ ++ E
Sbjct: 25 IGPTIAKQILADANVDGEKRVKELTEE 51
>sp|A3M0Z0|DADA_ACIBT D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=dadA PE=3 SV=2
Length = 421
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVYKLI 65
+ R E + L +L+KD G +++ R K T+QL + E V +++ +L E Y+L+
Sbjct: 108 MMRVAEYSRDCLRELRKDTGIHYENRAKGTLQLFRKEAQMEAVQRDISVLEECGVSYELL 167
Query: 66 GPVLVKQDLAEANANVRKRIE 86
NAN R+E
Sbjct: 168 ------------NANELGRVE 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,086,612
Number of Sequences: 539616
Number of extensions: 1559508
Number of successful extensions: 5937
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 5825
Number of HSP's gapped (non-prelim): 149
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)