Query 033252
Match_columns 123
No_of_seqs 102 out of 385
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 11:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3478 Prefoldin subunit 6, K 100.0 4.4E-28 9.4E-33 174.8 11.4 96 9-104 2-97 (120)
2 TIGR02338 gimC_beta prefoldin, 99.9 6.4E-26 1.4E-30 161.3 11.5 95 10-104 1-95 (110)
3 PRK09343 prefoldin subunit bet 99.9 1.2E-25 2.7E-30 163.0 12.1 96 8-103 3-98 (121)
4 COG1382 GimC Prefoldin, chaper 99.9 4.4E-25 9.6E-30 160.8 10.7 96 8-103 2-97 (119)
5 KOG4098 Molecular chaperone Pr 99.9 2.5E-22 5.4E-27 148.6 10.1 100 1-100 1-103 (140)
6 cd00632 Prefoldin_beta Prefold 99.9 4.8E-22 1E-26 140.0 10.9 89 14-102 1-89 (105)
7 PF01920 Prefoldin_2: Prefoldi 99.8 2.6E-18 5.7E-23 118.5 9.8 89 15-103 1-89 (106)
8 cd00890 Prefoldin Prefoldin is 99.4 2.5E-12 5.5E-17 91.3 10.1 92 15-106 2-117 (129)
9 PRK03947 prefoldin subunit alp 99.2 1E-10 2.2E-15 85.5 9.7 97 10-106 4-124 (140)
10 TIGR00293 prefoldin, archaeal 99.0 1E-08 2.2E-13 73.5 10.4 94 15-108 2-118 (126)
11 cd00584 Prefoldin_alpha Prefol 98.9 2.4E-08 5.3E-13 71.8 9.1 92 15-106 2-117 (129)
12 COG1730 GIM5 Predicted prefold 98.0 4.6E-05 1E-09 57.4 9.0 93 10-102 4-120 (145)
13 PRK14011 prefoldin subunit alp 98.0 0.00012 2.6E-09 55.0 10.2 91 12-102 3-114 (144)
14 PF02996 Prefoldin: Prefoldin 97.4 0.00028 6E-09 49.6 4.4 82 25-106 2-107 (120)
15 KOG3501 Molecular chaperone Pr 97.2 0.0043 9.3E-08 45.0 9.0 85 14-98 5-89 (114)
16 PRK01203 prefoldin subunit alp 96.7 0.046 1E-06 40.6 11.1 86 16-101 4-112 (130)
17 PF13758 Prefoldin_3: Prefoldi 95.5 0.066 1.4E-06 38.2 6.4 78 17-101 10-93 (99)
18 KOG1760 Molecular chaperone Pr 95.4 0.26 5.7E-06 36.7 9.4 76 12-87 16-92 (131)
19 PF01920 Prefoldin_2: Prefoldi 92.3 1 2.2E-05 30.4 7.0 99 9-107 2-100 (106)
20 cd00632 Prefoldin_beta Prefold 91.5 3.2 6.9E-05 28.8 9.0 99 9-107 3-101 (105)
21 PF10303 DUF2408: Protein of u 89.6 2.3 5E-05 31.4 7.2 88 8-95 3-124 (134)
22 PF04977 DivIC: Septum formati 88.2 3.1 6.8E-05 26.6 6.4 57 9-65 21-78 (80)
23 PRK03947 prefoldin subunit alp 87.8 0.62 1.3E-05 33.7 3.1 38 19-56 6-43 (140)
24 PRK03918 chromosome segregatio 87.2 13 0.00028 33.9 11.9 76 20-98 399-474 (880)
25 COG1382 GimC Prefoldin, chaper 87.2 9.9 0.00021 27.9 9.7 105 6-111 7-112 (119)
26 TIGR00293 prefoldin, archaeal 86.8 0.81 1.8E-05 32.4 3.2 79 22-103 2-106 (126)
27 PRK09343 prefoldin subunit bet 83.9 14 0.00029 26.6 10.1 101 6-106 8-108 (121)
28 COG4550 Predicted membrane pro 83.7 3.5 7.5E-05 30.4 5.3 55 34-95 26-83 (120)
29 PRK00888 ftsB cell division pr 82.5 8.4 0.00018 27.2 6.8 60 7-67 29-90 (105)
30 TIGR02338 gimC_beta prefoldin, 82.4 14 0.00031 25.8 9.6 99 7-105 5-103 (110)
31 KOG3313 Molecular chaperone Pr 81.8 8.5 0.00018 30.3 7.1 107 15-123 40-176 (187)
32 PRK02224 chromosome segregatio 80.8 16 0.00034 33.6 9.6 62 16-78 409-470 (880)
33 cd00890 Prefoldin Prefoldin is 80.5 16 0.00036 25.2 9.7 93 10-104 4-122 (129)
34 smart00150 SPEC Spectrin repea 78.6 6.3 0.00014 25.0 4.7 26 78-103 72-97 (101)
35 PF13093 FTA4: Kinetochore com 78.3 9.7 0.00021 30.2 6.6 52 16-70 139-190 (213)
36 PF04111 APG6: Autophagy prote 77.3 20 0.00044 29.7 8.5 88 8-97 46-134 (314)
37 PRK11637 AmiB activator; Provi 76.4 47 0.001 28.2 12.5 31 78-108 105-135 (428)
38 PF00435 Spectrin: Spectrin re 74.8 19 0.0004 22.8 8.0 68 37-105 35-102 (105)
39 PF15070 GOLGA2L5: Putative go 74.4 56 0.0012 29.9 11.1 80 9-94 26-105 (617)
40 PF12718 Tropomyosin_1: Tropom 74.1 33 0.00072 25.4 8.9 36 19-54 35-70 (143)
41 PF10241 KxDL: Uncharacterized 73.0 27 0.00058 23.8 9.0 34 74-107 55-88 (88)
42 PF07303 Occludin_ELL: Occludi 72.6 30 0.00066 24.3 9.6 80 12-101 15-98 (101)
43 PRK01156 chromosome segregatio 72.0 70 0.0015 29.6 11.3 77 19-99 416-492 (895)
44 PF06518 DUF1104: Protein of u 71.4 7.5 0.00016 27.3 3.9 48 57-105 7-55 (93)
45 PF11932 DUF3450: Protein of u 71.3 38 0.00082 26.8 8.4 109 9-117 46-165 (251)
46 PF08286 Spc24: Spc24 subunit 71.3 0.91 2E-05 32.4 -0.8 57 16-73 17-77 (118)
47 TIGR03185 DNA_S_dndD DNA sulfu 70.8 68 0.0015 28.9 10.7 77 12-99 209-285 (650)
48 PRK11637 AmiB activator; Provi 70.2 67 0.0015 27.3 12.4 30 12-41 47-76 (428)
49 PF09932 DUF2164: Uncharacteri 69.6 7.4 0.00016 26.3 3.4 38 60-97 38-75 (76)
50 PRK03918 chromosome segregatio 69.4 55 0.0012 29.9 9.9 22 78-99 309-330 (880)
51 PF04912 Dynamitin: Dynamitin 69.1 45 0.00098 28.2 8.8 64 14-95 324-387 (388)
52 PRK01156 chromosome segregatio 68.7 90 0.002 28.9 11.3 73 27-99 250-328 (895)
53 PF10393 Matrilin_ccoil: Trime 67.6 13 0.00029 23.0 4.0 30 70-99 17-46 (47)
54 PF09006 Surfac_D-trimer: Lung 67.0 11 0.00023 23.5 3.4 45 22-66 2-46 (46)
55 PF10473 CENP-F_leu_zip: Leuci 66.7 52 0.0011 24.6 9.9 86 6-95 53-138 (140)
56 COG3883 Uncharacterized protei 65.9 76 0.0017 26.3 10.3 24 72-95 87-110 (265)
57 PF14712 Snapin_Pallidin: Snap 64.6 39 0.00084 22.5 9.5 79 7-99 9-87 (92)
58 PF08317 Spc7: Spc7 kinetochor 64.4 33 0.00073 28.3 7.0 21 86-106 279-299 (325)
59 PF09726 Macoilin: Transmembra 64.3 1E+02 0.0022 28.7 10.6 77 18-101 487-563 (697)
60 KOG3047 Predicted transcriptio 63.4 64 0.0014 24.5 8.3 91 9-99 27-128 (157)
61 PF08657 DASH_Spc34: DASH comp 63.2 62 0.0013 26.5 8.2 80 16-100 177-256 (259)
62 cd07628 BAR_Atg24p The Bin/Amp 62.7 66 0.0014 24.5 11.1 82 10-105 9-90 (185)
63 PHA02562 46 endonuclease subun 62.2 1E+02 0.0022 26.5 11.1 30 75-104 298-327 (562)
64 PF10498 IFT57: Intra-flagella 61.6 1E+02 0.0022 26.3 10.1 24 81-104 306-329 (359)
65 KOG3048 Molecular chaperone Pr 61.2 73 0.0016 24.4 11.4 35 67-101 92-126 (153)
66 COG1579 Zn-ribbon protein, pos 60.2 93 0.002 25.3 9.4 90 18-107 88-180 (239)
67 PF04136 Sec34: Sec34-like fam 59.0 74 0.0016 23.8 8.2 84 7-90 30-113 (157)
68 PF03962 Mnd1: Mnd1 family; I 57.2 88 0.0019 24.1 10.4 13 107-119 153-165 (188)
69 KOG1029 Endocytic adaptor prot 55.2 1.4E+02 0.003 29.0 9.9 36 13-48 487-522 (1118)
70 PF03904 DUF334: Domain of unk 54.4 1.2E+02 0.0026 24.8 11.9 59 46-105 100-160 (230)
71 PF08826 DMPK_coil: DMPK coile 53.5 60 0.0013 21.1 7.1 42 10-51 2-43 (61)
72 PF10368 YkyA: Putative cell-w 52.8 47 0.001 26.0 5.7 39 59-97 49-93 (204)
73 PF08580 KAR9: Yeast cortical 52.8 1.4E+02 0.0031 27.7 9.6 85 11-106 234-329 (683)
74 PRK06266 transcription initiat 52.5 14 0.00029 28.4 2.6 32 64-95 141-172 (178)
75 KOG1937 Uncharacterized conser 52.0 1.8E+02 0.004 26.3 10.2 83 18-106 344-433 (521)
76 smart00435 TOPEUc DNA Topoisom 51.3 1.3E+02 0.0028 26.3 8.5 78 25-102 276-362 (391)
77 PF06698 DUF1192: Protein of u 51.0 31 0.00066 22.4 3.7 35 68-102 12-47 (59)
78 PF10168 Nup88: Nuclear pore c 50.9 2.1E+02 0.0046 26.7 10.5 94 10-105 570-668 (717)
79 PRK04778 septation ring format 50.9 50 0.0011 29.4 6.2 79 23-101 102-190 (569)
80 PF10046 BLOC1_2: Biogenesis o 50.1 82 0.0018 21.7 7.2 35 18-52 51-85 (99)
81 KOG0976 Rho/Rac1-interacting s 49.3 1.7E+02 0.0038 28.6 9.6 86 10-98 104-198 (1265)
82 TIGR00634 recN DNA repair prot 49.3 79 0.0017 28.0 7.2 50 9-58 158-207 (563)
83 PF10359 Fmp27_WPPW: RNA pol I 49.3 1.2E+02 0.0025 26.6 8.1 69 27-101 164-232 (475)
84 PRK04863 mukB cell division pr 49.1 3.1E+02 0.0067 28.0 11.8 89 12-106 383-472 (1486)
85 PRK05431 seryl-tRNA synthetase 48.9 1.8E+02 0.0038 25.2 10.4 82 18-114 27-108 (425)
86 cd00584 Prefoldin_alpha Prefol 48.8 92 0.002 21.8 9.6 92 10-103 4-121 (129)
87 PF08946 Osmo_CC: Osmosensory 48.6 30 0.00065 21.5 3.2 29 73-101 2-30 (46)
88 KOG2196 Nuclear porin [Nuclear 48.5 1.6E+02 0.0034 24.4 9.5 43 12-54 113-155 (254)
89 cd00176 SPEC Spectrin repeats, 48.3 56 0.0012 23.2 5.2 23 79-101 182-204 (213)
90 TIGR00606 rad50 rad50. This fa 47.2 2.9E+02 0.0064 27.2 11.8 94 8-106 825-918 (1311)
91 smart00787 Spc7 Spc7 kinetocho 47.1 1.1E+02 0.0024 25.5 7.4 21 86-106 274-294 (312)
92 COG2919 Septum formation initi 45.7 1.1E+02 0.0023 21.8 6.6 57 12-68 57-114 (117)
93 COG1730 GIM5 Predicted prefold 45.3 1.2E+02 0.0025 22.9 6.6 43 3-45 92-134 (145)
94 PF06160 EzrA: Septation ring 45.0 2.3E+02 0.005 25.3 9.6 79 23-101 98-186 (560)
95 COG5293 Predicted ATPase [Gene 44.8 1.5E+02 0.0033 27.0 8.1 62 38-99 281-351 (591)
96 PF04156 IncA: IncA protein; 43.6 1.3E+02 0.0029 22.3 10.7 27 77-103 124-150 (191)
97 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.1 1.2E+02 0.0027 21.7 9.7 27 75-101 90-116 (132)
98 KOG2150 CCR4-NOT transcription 42.1 2.8E+02 0.0061 25.5 10.5 86 9-100 42-139 (575)
99 COG4372 Uncharacterized protei 41.9 1.1E+02 0.0025 27.2 6.8 40 14-53 139-178 (499)
100 PF05064 Nsp1_C: Nsp1-like C-t 41.9 79 0.0017 22.4 5.0 43 12-54 57-99 (116)
101 KOG3129 26S proteasome regulat 41.6 49 0.0011 27.0 4.2 29 23-51 18-46 (231)
102 PF05816 TelA: Toxic anion res 41.4 1.8E+02 0.0038 24.2 7.7 43 12-54 84-126 (333)
103 TIGR02977 phageshock_pspA phag 41.4 1.7E+02 0.0036 22.7 8.9 80 16-95 103-185 (219)
104 PRK13922 rod shape-determining 41.1 1.3E+02 0.0028 23.9 6.6 44 13-56 70-113 (276)
105 PHA00489 scaffolding protein 41.0 95 0.0021 22.1 5.2 12 57-68 63-74 (101)
106 PF14257 DUF4349: Domain of un 40.4 1.8E+02 0.0039 22.9 7.8 68 14-101 127-194 (262)
107 PLN02678 seryl-tRNA synthetase 40.3 2.6E+02 0.0056 24.6 10.6 82 18-114 32-113 (448)
108 PRK15365 type III secretion sy 40.0 1.4E+02 0.0031 21.5 7.6 77 12-98 19-95 (107)
109 COG5509 Uncharacterized small 39.4 54 0.0012 21.7 3.5 25 77-101 26-50 (65)
110 PF02101 Ocular_alb: Ocular al 39.0 41 0.00089 29.5 3.7 47 64-110 207-253 (405)
111 PF08663 HalX: HalX domain; I 38.8 1.2E+02 0.0025 20.2 7.5 64 19-107 4-68 (71)
112 COG4942 Membrane-bound metallo 38.7 1.6E+02 0.0034 26.1 7.2 22 23-44 63-84 (420)
113 PF14282 FlxA: FlxA-like prote 38.1 98 0.0021 21.7 5.0 18 28-45 53-70 (106)
114 PF04102 SlyX: SlyX; InterPro 37.6 1.1E+02 0.0025 19.7 5.5 33 74-106 2-34 (69)
115 KOG4796 RNA polymerase II elon 37.6 3.4E+02 0.0073 25.1 9.8 81 12-101 508-592 (604)
116 PF08656 DASH_Dad3: DASH compl 37.1 58 0.0013 22.2 3.5 45 12-56 3-47 (78)
117 PF15136 UPF0449: Uncharacteri 36.6 1.2E+02 0.0025 21.6 5.1 21 45-65 16-36 (97)
118 smart00787 Spc7 Spc7 kinetocho 36.3 2.6E+02 0.0055 23.4 10.6 52 7-58 153-204 (312)
119 PRK09039 hypothetical protein; 36.3 2.6E+02 0.0056 23.5 11.1 47 8-54 119-165 (343)
120 COG1792 MreC Cell shape-determ 36.1 1.4E+02 0.003 24.5 6.3 57 13-69 67-123 (284)
121 PF04912 Dynamitin: Dynamitin 36.0 1.4E+02 0.003 25.2 6.4 82 8-89 242-325 (388)
122 KOG2264 Exostosin EXT1L [Signa 35.7 92 0.002 29.3 5.5 42 14-55 81-122 (907)
123 PRK00736 hypothetical protein; 35.4 1.3E+02 0.0027 19.6 5.6 33 74-106 3-35 (68)
124 PRK09039 hypothetical protein; 34.6 2.8E+02 0.006 23.3 7.9 33 65-97 223-255 (343)
125 PF06295 DUF1043: Protein of u 34.5 85 0.0018 22.7 4.3 46 65-110 12-59 (128)
126 PTZ00464 SNF-7-like protein; P 34.1 76 0.0016 25.1 4.3 28 71-98 13-40 (211)
127 COG1675 TFA1 Transcription ini 34.1 43 0.00093 26.0 2.8 33 65-97 138-170 (176)
128 PRK13729 conjugal transfer pil 33.7 1.9E+02 0.0041 26.0 7.0 35 13-47 77-111 (475)
129 PF07334 IFP_35_N: Interferon- 33.6 1.4E+02 0.003 20.4 4.9 39 22-60 3-41 (76)
130 COG2976 Uncharacterized protei 33.5 1.4E+02 0.003 24.0 5.6 55 33-87 130-188 (207)
131 COG5460 Uncharacterized conser 33.4 69 0.0015 22.1 3.4 37 63-99 44-80 (82)
132 PF10018 Med4: Vitamin-D-recep 33.2 2.2E+02 0.0047 21.7 6.7 39 14-52 24-62 (188)
133 KOG4552 Vitamin-D-receptor int 33.1 2E+02 0.0044 23.6 6.6 44 12-63 67-110 (272)
134 PF06818 Fez1: Fez1; InterPro 33.0 2.5E+02 0.0055 22.4 8.4 89 13-101 67-156 (202)
135 PF15233 SYCE1: Synaptonemal c 32.9 85 0.0018 23.6 4.1 37 9-52 3-39 (134)
136 PRK04325 hypothetical protein; 32.6 1.5E+02 0.0032 19.6 5.5 34 73-106 6-39 (74)
137 PF04508 Pox_A_type_inc: Viral 32.5 63 0.0014 17.3 2.5 20 27-46 2-21 (23)
138 KOG0996 Structural maintenance 32.3 4.3E+02 0.0093 26.7 9.5 91 10-100 389-489 (1293)
139 PF05377 FlaC_arch: Flagella a 32.1 1.3E+02 0.0029 19.2 4.4 30 23-52 4-33 (55)
140 COG5325 t-SNARE complex subuni 31.9 81 0.0018 26.5 4.2 40 59-100 208-247 (283)
141 COG3853 TelA Uncharacterized p 31.4 1.6E+02 0.0034 25.8 6.0 44 11-54 129-172 (386)
142 COG5570 Uncharacterized small 31.4 72 0.0016 20.6 3.0 26 74-99 31-56 (57)
143 PRK02224 chromosome segregatio 31.3 4.2E+02 0.0092 24.4 10.5 33 19-51 213-245 (880)
144 PF04880 NUDE_C: NUDE protein, 31.2 1.2E+02 0.0026 23.4 4.8 39 21-59 2-40 (166)
145 PRK04778 septation ring format 31.2 3.8E+02 0.0083 23.9 11.0 46 7-52 312-367 (569)
146 PF03532 OMS28_porin: OMS28 po 31.2 2.8E+02 0.006 22.2 7.4 62 18-84 176-237 (253)
147 COG4942 Membrane-bound metallo 31.1 3.7E+02 0.0081 23.8 10.4 71 14-99 40-110 (420)
148 PF07851 TMPIT: TMPIT-like pro 31.0 2.3E+02 0.0051 24.1 6.9 31 13-43 5-35 (330)
149 PF14193 DUF4315: Domain of un 31.0 1.2E+02 0.0026 20.7 4.3 34 21-54 3-36 (83)
150 PRK10869 recombination and rep 31.0 2.5E+02 0.0055 25.0 7.5 48 10-57 155-202 (553)
151 KOG3647 Predicted coiled-coil 30.9 1.7E+02 0.0037 24.9 5.9 53 10-62 110-166 (338)
152 PRK14127 cell division protein 30.6 2.1E+02 0.0045 20.6 6.4 45 7-51 25-69 (109)
153 KOG0250 DNA repair protein RAD 30.3 4.9E+02 0.011 25.9 9.5 24 78-101 445-468 (1074)
154 PF06133 DUF964: Protein of un 30.1 1E+02 0.0022 20.7 3.9 22 12-33 33-54 (108)
155 KOG4360 Uncharacterized coiled 29.8 2.5E+02 0.0055 25.8 7.2 50 4-53 211-260 (596)
156 PHA02115 hypothetical protein 29.0 28 0.00061 24.6 0.9 36 87-122 2-39 (105)
157 PF07352 Phage_Mu_Gam: Bacteri 29.0 70 0.0015 23.4 3.1 48 73-120 36-83 (149)
158 PRK11677 hypothetical protein; 28.8 1.4E+02 0.003 22.2 4.6 43 65-107 16-60 (134)
159 PRK13922 rod shape-determining 28.8 1.6E+02 0.0034 23.4 5.3 44 14-57 64-107 (276)
160 PF08653 DASH_Dam1: DASH compl 28.4 1.7E+02 0.0036 18.8 4.6 38 73-111 9-47 (58)
161 PRK10698 phage shock protein P 28.3 3E+02 0.0064 21.7 8.8 15 81-95 171-185 (222)
162 PF02996 Prefoldin: Prefoldin 28.0 2E+02 0.0043 19.6 5.6 33 19-51 84-116 (120)
163 PF13514 AAA_27: AAA domain 27.8 4.8E+02 0.01 25.2 9.1 89 13-101 175-267 (1111)
164 KOG0250 DNA repair protein RAD 27.8 5.6E+02 0.012 25.5 9.5 82 16-99 334-417 (1074)
165 PF03961 DUF342: Protein of un 27.7 3.9E+02 0.0085 22.9 9.0 30 25-54 333-362 (451)
166 PF08898 DUF1843: Domain of un 27.7 1.7E+02 0.0037 18.7 4.3 35 6-40 18-52 (53)
167 smart00338 BRLZ basic region l 27.2 1.6E+02 0.0035 18.3 5.5 22 18-39 32-53 (65)
168 COG5665 NOT5 CCR4-NOT transcri 27.1 4.6E+02 0.01 23.5 10.8 103 8-112 31-153 (548)
169 PRK00295 hypothetical protein; 27.1 1.8E+02 0.0039 18.8 5.6 33 74-106 3-35 (68)
170 PF08549 SWI-SNF_Ssr4: Fungal 27.1 1.6E+02 0.0034 27.6 5.5 35 72-106 360-394 (669)
171 PF08614 ATG16: Autophagy prot 27.0 2.1E+02 0.0044 21.8 5.5 29 24-52 93-121 (194)
172 PRK14011 prefoldin subunit alp 26.9 2.1E+02 0.0045 21.4 5.3 92 19-110 3-115 (144)
173 PHA02096 hypothetical protein 26.6 66 0.0014 22.6 2.4 37 58-94 19-55 (103)
174 KOG2196 Nuclear porin [Nuclear 26.2 3.8E+02 0.0082 22.2 9.3 49 6-54 114-162 (254)
175 KOG0933 Structural maintenance 26.0 5.6E+02 0.012 25.6 9.1 35 69-103 773-807 (1174)
176 cd00176 SPEC Spectrin repeats, 25.9 2.4E+02 0.0052 19.8 6.4 18 12-29 33-50 (213)
177 KOG1760 Molecular chaperone Pr 25.7 2.9E+02 0.0063 20.7 8.3 87 15-101 26-113 (131)
178 cd09237 V_ScBro1_like Protein- 25.5 3.9E+02 0.0085 22.2 9.1 40 16-55 125-164 (356)
179 PF04168 Alpha-E: A predicted 25.2 3.7E+02 0.008 21.7 7.0 66 39-104 239-311 (311)
180 PF06366 FlhE: Flagellar prote 25.1 20 0.00043 25.7 -0.4 10 113-122 29-38 (106)
181 PF13514 AAA_27: AAA domain 25.1 6.3E+02 0.014 24.4 10.2 30 74-103 799-828 (1111)
182 PF08317 Spc7: Spc7 kinetochor 25.0 3.9E+02 0.0085 22.0 11.9 51 8-58 159-209 (325)
183 KOG4302 Microtubule-associated 24.9 5.3E+02 0.012 24.2 8.5 88 13-105 161-248 (660)
184 KOG0981 DNA topoisomerase I [R 24.9 2.8E+02 0.0062 26.0 6.7 68 25-102 635-702 (759)
185 TIGR00373 conserved hypothetic 24.9 44 0.00095 25.0 1.4 25 65-89 134-158 (158)
186 cd07624 BAR_SNX7_30 The Bin/Am 24.8 3.2E+02 0.0069 20.9 9.6 75 11-100 20-94 (200)
187 KOG1655 Protein involved in va 24.3 1.7E+02 0.0038 23.6 4.7 31 71-101 14-44 (218)
188 PF04111 APG6: Autophagy prote 24.3 4.1E+02 0.009 22.0 7.7 43 11-53 42-84 (314)
189 KOG0963 Transcription factor/C 24.2 3.6E+02 0.0077 25.2 7.2 46 13-58 293-342 (629)
190 TIGR00414 serS seryl-tRNA synt 24.0 4.7E+02 0.01 22.5 10.3 83 18-114 29-111 (418)
191 cd02666 Peptidase_C19J A subfa 23.8 1.2E+02 0.0026 25.4 4.0 39 75-122 245-283 (343)
192 PF11853 DUF3373: Protein of u 23.8 74 0.0016 28.6 2.8 18 27-44 32-49 (489)
193 PF10498 IFT57: Intra-flagella 23.7 3.9E+02 0.0083 22.9 7.0 37 10-46 264-300 (359)
194 PF06248 Zw10: Centromere/kine 23.5 3.9E+02 0.0084 23.8 7.3 60 23-82 73-132 (593)
195 TIGR00606 rad50 rad50. This fa 23.5 7.3E+02 0.016 24.6 9.9 46 10-55 324-369 (1311)
196 PF10975 DUF2802: Protein of u 23.2 1.9E+02 0.004 19.0 4.0 30 34-63 6-35 (70)
197 PF13600 DUF4140: N-terminal d 23.1 2.4E+02 0.0053 18.9 5.1 31 11-41 69-99 (104)
198 PRK10963 hypothetical protein; 23.0 3.3E+02 0.0071 21.2 6.1 54 20-82 45-98 (223)
199 PRK10722 hypothetical protein; 23.0 3.2E+02 0.0069 22.6 6.1 45 12-56 158-206 (247)
200 COG0497 RecN ATPase involved i 22.6 3.4E+02 0.0074 24.8 6.8 46 13-58 158-203 (557)
201 PF09340 NuA4: Histone acetylt 22.6 2.5E+02 0.0054 18.8 5.2 32 13-44 3-34 (80)
202 PF04136 Sec34: Sec34-like fam 22.2 3.2E+02 0.0068 20.4 5.6 78 20-100 8-86 (157)
203 PF15324 TALPID3: Hedgehog sig 22.1 2.5E+02 0.0054 28.1 6.0 58 37-94 380-444 (1252)
204 PHA02562 46 endonuclease subun 22.0 5.1E+02 0.011 22.3 11.6 15 78-92 381-395 (562)
205 PRK04406 hypothetical protein; 21.9 2.5E+02 0.0054 18.6 5.4 33 74-106 9-41 (75)
206 TIGR02231 conserved hypothetic 21.8 5.4E+02 0.012 22.4 10.5 37 10-46 69-105 (525)
207 PF13949 ALIX_LYPXL_bnd: ALIX 21.7 4E+02 0.0087 20.9 9.7 85 8-94 5-95 (296)
208 PRK02793 phi X174 lysis protei 21.7 2.5E+02 0.0053 18.4 5.5 33 74-106 6-38 (72)
209 PF15011 CK2S: Casein Kinase 2 21.4 3.7E+02 0.008 20.3 10.6 92 12-107 8-102 (168)
210 PF00038 Filament: Intermediat 21.2 4.3E+02 0.0093 21.0 13.0 38 75-112 254-291 (312)
211 PF13864 Enkurin: Calmodulin-b 21.1 2.8E+02 0.006 18.8 6.2 41 14-54 46-95 (98)
212 PF05010 TACC: Transforming ac 21.0 4.3E+02 0.0092 20.9 10.7 75 26-105 23-98 (207)
213 PF11348 DUF3150: Protein of u 21.0 1.8E+02 0.0039 23.6 4.3 45 59-106 67-111 (257)
214 PLN02320 seryl-tRNA synthetase 21.0 6.2E+02 0.013 22.8 10.3 35 78-115 139-173 (502)
215 PRK13676 hypothetical protein; 21.0 2.9E+02 0.0064 19.0 5.7 21 12-32 36-56 (114)
216 PF06632 XRCC4: DNA double-str 20.7 5.3E+02 0.012 21.9 7.3 30 24-53 149-178 (342)
217 PF14193 DUF4315: Domain of un 20.7 2.9E+02 0.0063 18.9 5.4 33 14-46 3-35 (83)
218 PF05791 Bacillus_HBL: Bacillu 20.3 3.9E+02 0.0085 20.2 9.5 20 83-102 163-182 (184)
219 PF13942 Lipoprotein_20: YfhG 20.3 4.3E+02 0.0094 20.8 6.2 48 9-56 109-160 (179)
220 PF06156 DUF972: Protein of un 20.0 3.3E+02 0.0072 19.3 7.4 49 6-54 9-57 (107)
No 1
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-28 Score=174.83 Aligned_cols=96 Identities=48% Similarity=0.652 Sum_probs=92.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
.+++++++.+++||+||.++.+....|++|++||+||+.|++||+.+++|++|||++|||||+|+.+||..||.+|+|||
T Consensus 2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHH
Q 033252 89 SAELYVSSYLVNWRFF 104 (123)
Q Consensus 89 ~~eik~l~kqi~~~~~ 104 (123)
+++|+++..+|.|..-
T Consensus 82 ~~Eikr~e~~i~d~q~ 97 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQE 97 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
No 2
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=99.94 E-value=6.4e-26 Score=161.28 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYIS 89 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~ 89 (123)
+||++|+++.+||++|++++.+.+++++++++++||+.|++||+.++||++|||+||||||++|+++|+++|++|+++|+
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHH
Q 033252 90 AELYVSSYLVNWRFF 104 (123)
Q Consensus 90 ~eik~l~kqi~~~~~ 104 (123)
.+++++++++..-.-
T Consensus 81 ~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 81 LRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876443
No 3
>PRK09343 prefoldin subunit beta; Provisional
Probab=99.93 E-value=1.2e-25 Score=163.04 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=92.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHH
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEY 87 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~ 87 (123)
.++||++|+++.+||++|++++.+.+++++++++++|++.|++||+.|++|++|||+||||||++|+++|+.+|++|+||
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ 82 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKEL 82 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHH
Q 033252 88 ISAELYVSSYLVNWRF 103 (123)
Q Consensus 88 I~~eik~l~kqi~~~~ 103 (123)
|+.+|++++++...-.
T Consensus 83 ie~~ik~lekq~~~l~ 98 (121)
T PRK09343 83 LELRSRTLEKQEKKLR 98 (121)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876543
No 4
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.4e-25 Score=160.81 Aligned_cols=96 Identities=28% Similarity=0.316 Sum_probs=92.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHH
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEY 87 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~ 87 (123)
.++||++|+.+++||+||++++.++.++++++++++|++.|++||+.+++|++|||.||++||+.++++|+.+|++|+|+
T Consensus 2 ~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~ 81 (119)
T COG1382 2 EQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET 81 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHH
Q 033252 88 ISAELYVSSYLVNWRF 103 (123)
Q Consensus 88 I~~eik~l~kqi~~~~ 103 (123)
|+.+++++.+|...-.
T Consensus 82 Le~ri~tLekQe~~l~ 97 (119)
T COG1382 82 LELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999976543
No 5
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-22 Score=148.62 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=90.8
Q ss_pred CChHH---HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHH
Q 033252 1 MGSAA---ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEA 77 (123)
Q Consensus 1 ms~~~---~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea 77 (123)
|+++. .+..-|+..+..+++|+.++++++.+.+.+..||.+++||..|+++|+.+||+++||||||+|||++|+.++
T Consensus 1 m~~a~~~~~~~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeV 80 (140)
T KOG4098|consen 1 MAAAQSGSGTAKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEV 80 (140)
T ss_pred CchhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHH
Confidence 66664 233345678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhh
Q 033252 78 NANVRKRIEYISAELYVSSYLVN 100 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~ 100 (123)
+|.|..++|+|+..++.+..|.-
T Consensus 81 lP~L~~nke~i~~~i~~l~~qL~ 103 (140)
T KOG4098|consen 81 LPILQTNKENIEKVIKKLTDQLV 103 (140)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 6
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.88 E-value=4.8e-22 Score=140.02 Aligned_cols=89 Identities=33% Similarity=0.414 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+|+.+.+||++|++++.+.+++++++++++||+.|++||+.++||++||++||+|+|++|+++|.++|++|+++|+.+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHH
Q 033252 94 VSSYLVNWR 102 (123)
Q Consensus 94 ~l~kqi~~~ 102 (123)
++++++.+-
T Consensus 81 ~l~~~~~~l 89 (105)
T cd00632 81 RLERQEEDL 89 (105)
T ss_pred HHHHHHHHH
Confidence 999988764
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.77 E-value=2.6e-18 Score=118.47 Aligned_cols=89 Identities=29% Similarity=0.383 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHH
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYV 94 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~ 94 (123)
|+.+.+|+.++.+++.+.+++..++.++++++.|++||+.++||++||+.||+++|+++++++.+.|+++++.++.++++
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHH
Q 033252 95 SSYLVNWRF 103 (123)
Q Consensus 95 l~kqi~~~~ 103 (123)
+++++..--
T Consensus 81 l~~~~~~l~ 89 (106)
T PF01920_consen 81 LEKQLKYLE 89 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887543
No 8
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.41 E-value=2.5e-12 Score=91.30 Aligned_cols=92 Identities=25% Similarity=0.239 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC-----------------------CCCchhhhhc-cchh
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN-----------------------EGANVYKLIG-PVLV 70 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~-----------------------~d~kvYKlVG-~VLV 70 (123)
+++...+++++++++.+.+++.++..++.|++.++++|+.++ ++.+||..|| |+.|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 567889999999999999999999999999999999999998 7899999999 9999
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 71 KQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+.+.++|...+++|+++++.+++.+.+.+..-.-.+
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 117 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQI 117 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765554
No 9
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.22 E-value=1e-10 Score=85.48 Aligned_cols=97 Identities=26% Similarity=0.205 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC---CCCchhhhhc--------------------
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN---EGANVYKLIG-------------------- 66 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~---~d~kvYKlVG-------------------- 66 (123)
..++++.+...|++++++++.+.+++..+.+.+.|+..++++|+.++ ++..+|.-+|
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG 83 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG 83 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence 35789999999999999999999999999999999999999999998 4445555555
Q ss_pred -cchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 67 -PVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 67 -~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
|++|+.+.+||++.+++|++.++..++.+.+++.+-.-.+
T Consensus 84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887654433
No 10
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=98.96 E-value=1e-08 Score=73.50 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhh-----------------------ccchhh
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLI-----------------------GPVLVK 71 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlV-----------------------G~VLVk 71 (123)
+.+..++++++++++.+.+++..+...+.|++.+++.|+.++++..+.-+| +++.|+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 567889999999999999999999999999999999999998766677777 889999
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 033252 72 QDLAEANANVRKRIEYISAELYVSSYLVNWRFFAIFL 108 (123)
Q Consensus 72 q~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~ 108 (123)
.+.++|++.+++|++.++..++.+.+.+.+-.-.+..
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876655543
No 11
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=98.85 E-value=2.4e-08 Score=71.76 Aligned_cols=92 Identities=23% Similarity=0.162 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC------------------------CCchhhhhccchh
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE------------------------GANVYKLIGPVLV 70 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~------------------------d~kvYKlVG~VLV 70 (123)
+.+...+++++.+++.+..++..+..++.|+..++++|+.+++ +..|..+-+++.|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v 81 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence 4677889999999999999999999999999999999999976 7789999999999
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 71 KQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+.+.++|++-+++|++.++..++.+.+.+..-.-.+
T Consensus 82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765544
No 12
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.6e-05 Score=57.44 Aligned_cols=93 Identities=22% Similarity=0.167 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCC-----------------------chhhhh-
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGA-----------------------NVYKLI- 65 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~-----------------------kvYKlV- 65 (123)
..++++++.+++|.++.+++.+.++...|..-++|...++++|+.++... ++-=.|
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence 45689999999999999999999999999999999999999999885433 111112
Q ss_pred ccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 033252 66 GPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 66 G~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
.++=|+.|.++|...+++|++.|++.++.+..-+..-
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l 120 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAEL 120 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999887666543
No 13
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.97 E-value=0.00012 Score=55.02 Aligned_cols=91 Identities=12% Similarity=0.121 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC--------------------Cchhhhhc-cchh
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG--------------------ANVYKLIG-PVLV 70 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d--------------------~kvYKlVG-~VLV 70 (123)
.++|..+..++.++++++.+.++.+.|..-.+|....++.|+.++++ .+|.=-|| ++.|
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 47899999999999999999999999999999999999999888654 23333343 6789
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 033252 71 KQDLAEANANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
+.+.++|+.-+++|+++|++..+.+...|..-
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887776653
No 14
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=97.39 E-value=0.00028 Score=49.58 Aligned_cols=82 Identities=22% Similarity=0.163 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC-----------------------CCchhhhhc-cchhhccHHHHHHH
Q 033252 25 QKDIGKNHQVRKKYTIQLGENELVLKELGLLNE-----------------------GANVYKLIG-PVLVKQDLAEANAN 80 (123)
Q Consensus 25 Q~~lq~l~~qr~qLesql~E~~~VleEL~~l~~-----------------------d~kvYKlVG-~VLVkq~~~Ea~~~ 80 (123)
+++++.+..++..+...+.|+..+++.|+.++. ..+||=.+| ++.|+.+.++|..-
T Consensus 2 ~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~ 81 (120)
T PF02996_consen 2 QEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEF 81 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHH
Confidence 345666777777777777777777777776543 345555555 68899999999999
Q ss_pred HHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 81 VRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 81 l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+++|++.++..++.+.+++..-.-.+
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887655444
No 15
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0043 Score=44.99 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
..++..+-..-|+++.....|+.++.-++.-.....+|+..+-++.++|..||...+.+|+.-+...++...-..+..|+
T Consensus 5 f~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~Ie 84 (114)
T KOG3501|consen 5 FSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIE 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHH
Confidence 33445556677888888888999999999999999999999999999999999999999987777666666666666666
Q ss_pred HHHhh
Q 033252 94 VSSYL 98 (123)
Q Consensus 94 ~l~kq 98 (123)
.+.++
T Consensus 85 aLqkk 89 (114)
T KOG3501|consen 85 ALQKK 89 (114)
T ss_pred HHHHH
Confidence 55443
No 16
>PRK01203 prefoldin subunit alpha; Provisional
Probab=96.72 E-value=0.046 Score=40.65 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC--CC--------------------Cchhhhh-ccchhhc
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN--EG--------------------ANVYKLI-GPVLVKQ 72 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~--~d--------------------~kvYKlV-G~VLVkq 72 (123)
+..++|+.++++.+.+.++.+.|..-.+|....++.|+.++ ++ .+|.=-| .++.|++
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK 83 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE 83 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence 56778899999999999999999999999999999998764 11 2222223 3678899
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 73 DLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
+.++++..|++|++.|+.-+.....++..
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~ 112 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKT 112 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888877766655543
No 17
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=95.48 E-value=0.066 Score=38.22 Aligned_cols=78 Identities=10% Similarity=0.176 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhcCc-CCCCchhhhhcc-chhhccHHHHHHHHHHhHHHHHH
Q 033252 17 KANDLSKLQKDIGKNHQ----VRKKYTIQLGENELVLKELGLL-NEGANVYKLIGP-VLVKQDLAEANANVRKRIEYISA 90 (123)
Q Consensus 17 ~~~~~q~lQ~~lq~l~~----qr~qLesql~E~~~VleEL~~l-~~d~kvYKlVG~-VLVkq~~~Ea~~~l~kRlE~I~~ 90 (123)
--++|..|.+++..+-. ...+ ...|-.+|+.- -....|=-++|. -.+.++.+.++.-|..|++|...
T Consensus 10 w~aEYe~LKEEi~~l~~~~~~~~e~-------l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~ 82 (99)
T PF13758_consen 10 WEAEYEGLKEEIEALPEDDDATRED-------LLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQ 82 (99)
T ss_pred HHHHHHHHHHHHHhccccCCCCHHH-------HHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 34567777777776632 2222 22233333321 122233334443 67889999999999999999999
Q ss_pred HHHHHHhhhhH
Q 033252 91 ELYVSSYLVNW 101 (123)
Q Consensus 91 eik~l~kqi~~ 101 (123)
-++++.||+..
T Consensus 83 Ni~tleKql~~ 93 (99)
T PF13758_consen 83 NIETLEKQLEA 93 (99)
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 18
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.26 Score=36.70 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC-CchhhhhccchhhccHHHHHHHHHHhHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG-ANVYKLIGPVLVKQDLAEANANVRKRIEY 87 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d-~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~ 87 (123)
-+=|+.+++|..+-...-.+...+...-+++.-.+-+.+|+..+++| ..|==.||.|.+--..+.+..-|++..|.
T Consensus 16 ~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~ 92 (131)
T KOG1760|consen 16 FEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKET 92 (131)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHH
Confidence 34567789999888888888888888888888888999999999888 45555689998766555444444433333
No 19
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=92.27 E-value=1 Score=30.42 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
.+..+++....+++.+..+++.+..++..++.=+.|.+.+-++-.--..=++||=....-=+.....+-...++..++.+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999988887773333333567766666666677788888888888888
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 033252 89 SAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 89 ~~eik~l~kqi~~~~~~~~ 107 (123)
+..++.+.+++.+-.-.++
T Consensus 82 ~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877655544
No 20
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.47 E-value=3.2 Score=28.81 Aligned_cols=99 Identities=14% Similarity=-0.003 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
++..+++....+++.+..+++.+.+++...+.=+.|.+.+-+.=.-...=+.||=..---=+....++-+..++.+++.+
T Consensus 3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l 82 (105)
T cd00632 3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRL 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888999999999999988888888877654222211122234443333334566777888888888888
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 033252 89 SAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 89 ~~eik~l~kqi~~~~~~~~ 107 (123)
++.++.+.+++..---.+.
T Consensus 83 ~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 83 ERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888877655543
No 21
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=89.57 E-value=2.3 Score=31.45 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=52.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHH-HHhc-------CcCCC--------
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQ-------------VRKKYTIQLGENELVL-KELG-------LLNEG-------- 58 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~-------------qr~qLesql~E~~~Vl-eEL~-------~l~~d-------- 58 (123)
+.+||.++-..+++-+++..+..+.+ ....+..||+|.+.-. ..=+ ...|+
T Consensus 3 e~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~R~~DGKF~~~~~g~~~~~gQ~~l~~L 82 (134)
T PF10303_consen 3 EPISPELQPIYEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESMRDVDGKFVSPDTGEVPPGGQAVLNGL 82 (134)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHhccCCCCeeCCCCCCCCcchHHHHHHH
Confidence 45788888888888888888887754 4445555555555444 1111 11122
Q ss_pred -Cchhhhhccchhhcc----HHHHHHHHHHhHHHHHHHHHHH
Q 033252 59 -ANVYKLIGPVLVKQD----LAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 59 -~kvYKlVG~VLVkq~----~~Ea~~~l~kRlE~I~~eik~l 95 (123)
+.||.++..++...+ .++....+=+++-.|+..++.+
T Consensus 83 Ld~C~~li~dl~~~~~~~~~~~~~l~~iY~~L~~ik~~LE~L 124 (134)
T PF10303_consen 83 LDDCFDLIEDLLERKGEEIEVDPSLQPIYDQLIDIKNTLENL 124 (134)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 357777777766654 4555555555555555555544
No 22
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=88.24 E-value=3.1 Score=26.60 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHhcCcCCCCchhhhh
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENE-LVLKELGLLNEGANVYKLI 65 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~-~VleEL~~l~~d~kvYKlV 65 (123)
.+..+++..-.++.+++++...+..++..|...-...+ .+.+.+.-..||..+|+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~~~~ 78 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVFKIP 78 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEEeCC
Confidence 33444445555555555555555555555523333333 4445888888898888865
No 23
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=87.83 E-value=0.62 Score=33.73 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN 56 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~ 56 (123)
.++++++.+++.+....+.|.+++++.+..+.|+..+.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666655543
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=87.24 E-value=13 Score=33.93 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhh
Q 033252 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYL 98 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kq 98 (123)
+...+.+++..+...+..+...+++.+..+++|+...|..++ -|.=|-+.-..++.......++.+..++..+.+.
T Consensus 399 ~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~ 474 (880)
T PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777888888888888765543332 4555555555555555555555555555554443
No 25
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=9.9 Score=27.94 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=77.9
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc-CCCCchhhhhccchhhccHHHHHHHHHHh
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL-NEGANVYKLIGPVLVKQDLAEANANVRKR 84 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l-~~d~kvYKlVG~VLVkq~~~Ea~~~l~kR 84 (123)
.+++.-.++|....+++.+-.+.+++-++....+.-++|.+.+-+.=.-- .-+.-+||.-=+.+ ..++++-+..++.|
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~-~~eL~er~E~Le~r 85 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEA-VDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHH-HHHHHHHHHHHHHH
Confidence 34555567888888888888888999999999999999988765431100 12456677644444 45788889999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 033252 85 IEYISAELYVSSYLVNWRFFAIFLLFN 111 (123)
Q Consensus 85 lE~I~~eik~l~kqi~~~~~~~~~~~~ 111 (123)
+..++...+.+..++..=.-.|...++
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998888887777765543
No 26
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=86.82 E-value=0.81 Score=32.42 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhh-----ccchhhc--------cHHHHH----------
Q 033252 22 SKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLI-----GPVLVKQ--------DLAEAN---------- 78 (123)
Q Consensus 22 q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlV-----G~VLVkq--------~~~Ea~---------- 78 (123)
+++..+++.+.++...+.+++.+....+.+++... .+.+.+ ..+||+- ++.+..
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~---~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~ 78 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAI---ETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGY 78 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCE
Confidence 45666666667777777777777777777766543 122222 2245522 111111
Q ss_pred ---HHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 79 ---ANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 79 ---~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
.++++-+++++.+++.+++++..-.
T Consensus 79 ~vE~~~~eA~~~l~~~~~~l~~~~~~l~ 106 (126)
T TIGR00293 79 YVEKDAEEAIEFLKKRIEELEKAIEKLQ 106 (126)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777766665433
No 27
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.93 E-value=14 Score=26.63 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=74.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhH
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRI 85 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRl 85 (123)
..++.-.++|....+++.+..+.+.+..++...+.=+.|.+.+-+.-.--..=.++|=..--.=++.++.+=+..++.++
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 44555567888888999999999999999999998888888765443333333455555555556677888888888888
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 033252 86 EYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 86 E~I~~eik~l~kqi~~~~~~~ 106 (123)
..+++..+.+.+++....-.+
T Consensus 88 k~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777665544
No 28
>COG4550 Predicted membrane protein [Function unknown]
Probab=83.72 E-value=3.5 Score=30.40 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHH---HHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHH
Q 033252 34 VRKKYTIQLGENELVL---KELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 34 qr~qLesql~E~~~Vl---eEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
--++.|+|+++|..|. ++++.+...++-|+-+ ++.+|....+-+++.|+.+|+.+
T Consensus 26 ~fq~aE~qin~n~~v~~~~~~iK~lQKeAVn~q~y-------~K~eAlkqses~i~~le~ei~~~ 83 (120)
T COG4550 26 FFQQAEAQINANQKVKTKVDEIKKLQKEAVNLQHY-------DKEEALKQSESKIDELEAEIDHL 83 (120)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHh-------hHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467889999988775 5777777777777655 58999999999999999999886
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.51 E-value=8.4 Score=27.22 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=40.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHhcCcCCCCchhhhhcc
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQ--LGENELVLKELGLLNEGANVYKLIGP 67 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesq--l~E~~~VleEL~~l~~d~kvYKlVG~ 67 (123)
...+..++.....+.++++++-+.+..++..|... .-| +.+-++|.-+.||-.+|.++.|
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiE-e~AR~~Lg~vk~gEivy~~~~~ 90 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIE-ERARNELGMVKPGETFYRIVPD 90 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHH-HHHHHHcCCCCCCCEEEEeCCC
Confidence 33445555566666666666666666666666542 222 3477789999999999999887
No 30
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.42 E-value=14 Score=25.79 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=59.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHH
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIE 86 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE 86 (123)
.+++..++|....+++.+..+++.+..++...+.=+.|.+.+-+.-.-...=+.+|=-..--=+..++.+=+..++.+++
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~ 84 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence 45556678888888888888899888888888888887776543322222222233222222234455555555566666
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 033252 87 YISAELYVSSYLVNWRFFA 105 (123)
Q Consensus 87 ~I~~eik~l~kqi~~~~~~ 105 (123)
.++..++.+.+++.+..-.
T Consensus 85 ~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 85 TLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666555554433
No 31
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.82 E-value=8.5 Score=30.34 Aligned_cols=107 Identities=19% Similarity=0.239 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc--------------------------CCCCchhhhhc-c
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL--------------------------NEGANVYKLIG-P 67 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l--------------------------~~d~kvYKlVG-~ 67 (123)
......|+++.-=-.++..++..|.+++-+.+.-|+=+..+ +|-.+||=.+| +
T Consensus 40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn 119 (187)
T KOG3313|consen 40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN 119 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence 33444455555555567788888888888888877655443 23345666666 7
Q ss_pred chhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH---HHhhcccccchhhhccC
Q 033252 68 VLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI---FLLFNISHLVSWKYELR 123 (123)
Q Consensus 68 VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~---~~~~~~~~~~~~~~~~~ 123 (123)
|+++-+.+||..=|++++....+.++.+..-++ |+.- --=+|+.|...|-...|
T Consensus 120 VMlEY~leEAeaLLkknl~sa~k~l~~~~~Dld--fLrdQvTTtEVN~ArvYNw~V~~R 176 (187)
T KOG3313|consen 120 VMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLD--FLRDQVTTTEVNMARVYNWDVKKR 176 (187)
T ss_pred eEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHhhceeeeeeeeeeeechHHHH
Confidence 999999999999999998888877777765432 2111 11256677777765543
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=80.85 E-value=16 Score=33.56 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHH
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEAN 78 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~ 78 (123)
..-..+..++.+++.+...+..+++.+..++..+++++.+=.+.+| -+-|-=+-.....+..
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C-p~C~r~~~~~~~~~~~ 470 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC-PECGQPVEGSPHVETI 470 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcCCCcchhhhH
Confidence 3335567788888888888889999999999999998743245566 3344333333333333
No 33
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=80.51 E-value=16 Score=25.25 Aligned_cols=93 Identities=19% Similarity=0.115 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------h-------------cCcCC-------CCchhh
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE------L-------------GLLNE-------GANVYK 63 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE------L-------------~~l~~-------d~kvYK 63 (123)
+....+....+++.++++++.+..++..++.-+.+.+.+-+. + ..-+. +.-|-+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~ 83 (129)
T cd00890 4 LAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEK 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEe
Confidence 344556666666677777777777777766666666665421 0 03232 333333
Q ss_pred hhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033252 64 LIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 64 lVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
.+..+ ....++-+..++++++.++..++.+..+++.---
T Consensus 84 ~~~eA--~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 84 SLEEA--IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred cHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 4678888899999999999999999988876443
No 34
>smart00150 SPEC Spectrin repeats.
Probab=78.56 E-value=6.3 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=17.2
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 78 NANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
.+.|..+++.|..+-..+...+..+-
T Consensus 72 ~~~i~~~~~~l~~~w~~l~~~~~~r~ 97 (101)
T smart00150 72 AEEIEERLEELNERWEELKELAEERR 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666665543
No 35
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=78.34 E-value=9.7 Score=30.18 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchh
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLV 70 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLV 70 (123)
++..+|..+..+|..+..+++++...+.-.+....-|+.++++.. -|-|=||
T Consensus 139 e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~---~IQ~NLv 190 (213)
T PF13093_consen 139 EEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQE---NIQPNLV 190 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcc---ccccccC
Confidence 567899999999999999999999999999999999988776665 4444455
No 36
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.29 E-value=20 Score=29.74 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhc-cHHHHHHHHHHhHH
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQ-DLAEANANVRKRIE 86 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq-~~~Ea~~~l~kRlE 86 (123)
..+..+++..-.+-..+.+++..+...+.++..++.+.+.-.++++.-+ ...|+.....-... ...+....++.+.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE--~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEE--EEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666666666666666666665422 25566555544443 56677888888888
Q ss_pred HHHHHHHHHHh
Q 033252 87 YISAELYVSSY 97 (123)
Q Consensus 87 ~I~~eik~l~k 97 (123)
+....+.++.+
T Consensus 124 ~~~~~L~~L~k 134 (314)
T PF04111_consen 124 YASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHCHHT
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 37
>PRK11637 AmiB activator; Provisional
Probab=76.42 E-value=47 Score=28.24 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHH
Q 033252 78 NANVRKRIEYISAELYVSSYLVNWRFFAIFL 108 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~ 108 (123)
+..++++++.++.+++...+.+..+.-.++.
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556555555554
No 38
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=74.81 E-value=19 Score=22.80 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 033252 37 KYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFA 105 (123)
Q Consensus 37 qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~ 105 (123)
.++.++..++.+..++....+.-.-..-.|..|+... ....+.|.++++.|..+-..+...+..+.-.
T Consensus 35 ~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 35 ELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333344555553332 4445788888888888888888888776543
No 39
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.42 E-value=56 Score=29.94 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
..+..++....+...|..+....+...+.|+.++.+.+.-+.+....+|.+ ||.-+++...+-...|.++++.+
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa------~pse~E~~Lq~E~~~L~kElE~L 99 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPA------GPSEVEQQLQAEAEHLRKELESL 99 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccc------cchHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888889988888776666655333332 66666655555555566666655
Q ss_pred HHHHHH
Q 033252 89 SAELYV 94 (123)
Q Consensus 89 ~~eik~ 94 (123)
...+..
T Consensus 100 ~~qlqa 105 (617)
T PF15070_consen 100 EEQLQA 105 (617)
T ss_pred HHHHHH
Confidence 554443
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.11 E-value=33 Score=25.38 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
.++..|+...+.+-....+++.++.+.+..+++-+.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445556666666666666666666666666655554
No 41
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=72.95 E-value=27 Score=23.78 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~ 107 (123)
.......+++.+|+|-.+|.+++..+...+|..|
T Consensus 55 ~~~~l~~mK~DLd~i~krir~lk~kl~~~yP~~y 88 (88)
T PF10241_consen 55 HTKLLKEMKKDLDYIFKRIRSLKAKLAKQYPEEY 88 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3455666889999999999999999999998765
No 42
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=72.59 E-value=30 Score=24.29 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccH----HHHHHHHHHhHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDL----AEANANVRKRIEY 87 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~----~Ea~~~l~kRlE~ 87 (123)
...+....+|..|..++..+...-.+|++++.. +++|+.=|+-|.-|+-+-.+ +-.-..-+.|-++
T Consensus 15 ~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~----------l~~~s~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~y 84 (101)
T PF07303_consen 15 AEFNDDYDEYKELHAEVDAVSRRFQELDSELKR----------LPPGSQEYKRIAQILQEYNKKKKRDPNYQEKKKRCEY 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------S-TTSHHHHHHH---HHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCcHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 457888999999999999999999999887653 45577778877744443332 2345667889999
Q ss_pred HHHHHHHHHhhhhH
Q 033252 88 ISAELYVSSYLVNW 101 (123)
Q Consensus 88 I~~eik~l~kqi~~ 101 (123)
|...|.-++++|.+
T Consensus 85 L~~KL~HIK~~I~~ 98 (101)
T PF07303_consen 85 LHNKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 43
>PRK01156 chromosome segregation protein; Provisional
Probab=72.01 E-value=70 Score=29.63 Aligned_cols=77 Identities=8% Similarity=-0.023 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhh
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYL 98 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kq 98 (123)
.++..+.+.+..+.+.+..+...+.+.+.++.+|+ .. .+|=.-.+|.= .--..+.....+.+++.++.+++.+++.
T Consensus 416 ~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~--~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQ--SVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC--CCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555 22 23433333332 3345555665565555555555555544
Q ss_pred h
Q 033252 99 V 99 (123)
Q Consensus 99 i 99 (123)
+
T Consensus 492 ~ 492 (895)
T PRK01156 492 V 492 (895)
T ss_pred H
Confidence 3
No 44
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=71.39 E-value=7.5 Score=27.27 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCchhhhhccchhhccHHHHHHHHHHhHHHHHH-HHHHHHhhhhHHHHH
Q 033252 57 EGANVYKLIGPVLVKQDLAEANANVRKRIEYISA-ELYVSSYLVNWRFFA 105 (123)
Q Consensus 57 ~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~-eik~l~kqi~~~~~~ 105 (123)
++..+++++|.| -+.+.-|...+|.+|..-++. +-+.+.+++-+..-+
T Consensus 7 sn~EL~kmaG~v-~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~k 55 (93)
T PF06518_consen 7 SNEELIKMAGKV-DPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARK 55 (93)
T ss_dssp -HHHHHHTTTTS--GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHCCC-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 356799999999 899999999999999999998 778888887765543
No 45
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.34 E-value=38 Score=26.77 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc-CCCCchhhhhccchhh----------ccHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL-NEGANVYKLIGPVLVK----------QDLAEA 77 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l-~~d~kvYKlVG~VLVk----------q~~~Ea 77 (123)
.+..+-+....+|.++..++..+.....+++.++...+..+++|+.= +.-....+-+-|+|.. .|.---
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~ 125 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFL 125 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34455666777777777777777777777777777766666666542 1122344444444322 121111
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccch
Q 033252 78 NANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVS 117 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~~~~~~ 117 (123)
..+=.+|++.|...+..-+-.....|-.++..+.|+...+
T Consensus 126 ~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg 165 (251)
T PF11932_consen 126 LEERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYG 165 (251)
T ss_pred hHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 2223357777777777777777777888877777665443
No 46
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=71.26 E-value=0.91 Score=32.38 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC----Cchhhhhccchhhcc
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG----ANVYKLIGPVLVKQD 73 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d----~kvYKlVG~VLVkq~ 73 (123)
.+=...+.++.++..+..+...|+.+..+.+.|-+.-....|. .++||.+| |=+..+
T Consensus 17 ~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG-I~~e~~ 77 (118)
T PF08286_consen 17 DLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG-IELEYD 77 (118)
T ss_dssp --------------------------HT------CCCCCHHCCCHHHHHHHHHCC-EEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc-EEEEec
Confidence 3334444455555555555555555555522222211222222 38999999 766553
No 47
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=70.81 E-value=68 Score=28.88 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 91 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~e 91 (123)
.++.+.-.++..++.+++.+......+..++.+...-+++++. -|+--|+-+... ...++.+++.+..+
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~------~~~~~GG~~~~~-----r~~Le~ei~~le~e 277 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK------KFRSEGGDLFEE-----REQLERQLKEIEAA 277 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchHHHH-----HHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555444442 455556654442 34445555555544
Q ss_pred HHHHHhhh
Q 033252 92 LYVSSYLV 99 (123)
Q Consensus 92 ik~l~kqi 99 (123)
+....+++
T Consensus 278 ~~e~~~~l 285 (650)
T TIGR03185 278 RKANRAQL 285 (650)
T ss_pred HHHHHHHH
Confidence 44444444
No 48
>PRK11637 AmiB activator; Provisional
Probab=70.24 E-value=67 Score=27.30 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQ 41 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesq 41 (123)
.++++.-.++++++++++.+..++..++.+
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333333333
No 49
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=69.58 E-value=7.4 Score=26.27 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=35.0
Q ss_pred chhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 60 NVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 60 kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
=+-+-+||...-|-+.||.+-+.+|.+.|..++-.+.|
T Consensus 38 F~~~elGp~~YNqgv~DA~~~~~~r~~~l~~~ly~lEk 75 (76)
T PF09932_consen 38 FFIEELGPHFYNQGVQDAQAVLEERMEDLEEELYELEK 75 (76)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhC
Confidence 46688999999999999999999999999999988876
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=69.40 E-value=55 Score=29.94 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=9.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhh
Q 033252 78 NANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi 99 (123)
..++.+++..+..++..+.+.+
T Consensus 309 ~~~l~~~~~~l~~~~~~l~~~l 330 (880)
T PRK03918 309 LREIEKRLSRLEEEINGIEERI 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 51
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=69.13 E-value=45 Score=28.15 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+..+..+..+.-+.+..+-+....+..+++.++..++.++.- ..+-...|+++++.|+.+|+
T Consensus 324 L~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~------------------~~~N~~~i~~n~~~le~Ri~ 385 (388)
T PF04912_consen 324 LKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK------------------FKENMETIEKNVKKLEERIA 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHh
Confidence 444455555556667777777777778888888888777652 55566666666666666666
Q ss_pred HH
Q 033252 94 VS 95 (123)
Q Consensus 94 ~l 95 (123)
.|
T Consensus 386 ~L 387 (388)
T PF04912_consen 386 KL 387 (388)
T ss_pred cc
Confidence 54
No 52
>PRK01156 chromosome segregation protein; Provisional
Probab=68.70 E-value=90 Score=28.91 Aligned_cols=73 Identities=15% Similarity=0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC------CchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 033252 27 DIGKNHQVRKKYTIQLGENELVLKELGLLNEG------ANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 27 ~lq~l~~qr~qLesql~E~~~VleEL~~l~~d------~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi 99 (123)
.+..+..++.+++..+.|.+.-.+++..+.+. ...|..--...-.....+....++++++.++.++..+.+.+
T Consensus 250 ~~~~~e~~i~ele~~l~el~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~ 328 (895)
T PRK01156 250 MKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAII 328 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555444445555544430 12222111111122344455555555555555555555444
No 53
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=67.63 E-value=13 Score=23.01 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=25.5
Q ss_pred hhccHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 033252 70 VKQDLAEANANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 70 Vkq~~~Ea~~~l~kRlE~I~~eik~l~kqi 99 (123)
+...+.+++..|+.+++.++++++.++.++
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677889999999999999999998875
No 54
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=67.00 E-value=11 Score=23.51 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhc
Q 033252 22 SKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIG 66 (123)
Q Consensus 22 q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG 66 (123)
..|+++...+..+.+.|++-.+-.+.|.-=-+.-.=+.||||..|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~g 46 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTAG 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccCC
Confidence 467888888888888888888888888633232223457777554
No 55
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=66.69 E-value=52 Score=24.64 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=61.6
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhH
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRI 85 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRl 85 (123)
...++..+++......+++..++..+...+..|..++.+..-=..||+....+ +-+++.. +++.+.....+.+-..
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~--~~~~l~~--~E~ek~q~~e~~~~~v 128 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSS--LENLLQE--KEQEKVQLKEESKSAV 128 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888888888888888888888876654 3344442 2334666666666666
Q ss_pred HHHHHHHHHH
Q 033252 86 EYISAELYVS 95 (123)
Q Consensus 86 E~I~~eik~l 95 (123)
+.+..+++.+
T Consensus 129 e~L~~ql~~L 138 (140)
T PF10473_consen 129 EMLQKQLKEL 138 (140)
T ss_pred HHHHHHHhhh
Confidence 6666666554
No 56
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.94 E-value=76 Score=26.29 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHH
Q 033252 72 QDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 72 q~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
.+.++...++.+|-+.+..+...+
T Consensus 87 ~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 87 KEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666555554
No 57
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=64.62 E-value=39 Score=22.45 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=52.6
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHH
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIE 86 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE 86 (123)
.+-+.|.+...-..++.+++....+..+...+...+.++..+.+--+.++ +++ ...=..++.+|+.
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~------------~~~--y~~KL~~ikkrm~ 74 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFD------------LDP--YVKKLVNIKKRMS 74 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH------------hhH--HHHHHHHHHHHHH
Confidence 44566888888888899999998998888888888887776553322211 111 2333456666776
Q ss_pred HHHHHHHHHHhhh
Q 033252 87 YISAELYVSSYLV 99 (123)
Q Consensus 87 ~I~~eik~l~kqi 99 (123)
.+...+.++.+-+
T Consensus 75 ~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 75 NLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 58
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.36 E-value=33 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 033252 86 EYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 86 E~I~~eik~l~kqi~~~~~~~ 106 (123)
..+..++..+.+.-+|++..+
T Consensus 279 ~~Lk~~~~~Le~~~gw~~~~~ 299 (325)
T PF08317_consen 279 KRLKAKVDALEKLTGWKIVSI 299 (325)
T ss_pred HHHHHHHHHHHHHHCcEEEEE
Confidence 345556666666666666443
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.26 E-value=1e+02 Score=28.72 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
-..+++|..+|.....+|+.+|+||+|-.....+=+. +--|-++. -..++.|+-..+..|...++.|++++..
T Consensus 487 Kq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~-----~aar~~~~--~~~~r~e~~e~~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 487 KQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE-----KAARALAQ--AQATRQECAESCRQRRRQLESELKKLRR 559 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----hhhhcccc--chhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777888888877766554221 22222222 1334557777888898888888888866
Q ss_pred hhhH
Q 033252 98 LVNW 101 (123)
Q Consensus 98 qi~~ 101 (123)
.+-.
T Consensus 560 elk~ 563 (697)
T PF09726_consen 560 ELKQ 563 (697)
T ss_pred HHHH
Confidence 5543
No 60
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=63.44 E-value=64 Score=24.54 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC----------cCCC-CchhhhhccchhhccHHHH
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL----------LNEG-ANVYKLIGPVLVKQDLAEA 77 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~----------l~~d-~kvYKlVG~VLVkq~~~Ea 77 (123)
-++|.+......|..+|+++.+...-+-..+.-+++.-.-++-=-. +++. +.+-++-.++.++-+..||
T Consensus 27 Vih~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadA 106 (157)
T KOG3047|consen 27 VIHPDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADA 106 (157)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHH
Confidence 3667788888888888888888887777766666554333221111 1222 3445666789999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhhh
Q 033252 78 NANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi 99 (123)
+...+.+.+.++.-.+++.|--
T Consensus 107 iKf~DRK~dlLkel~ekLqKds 128 (157)
T KOG3047|consen 107 IKFCDRKMDLLKELMEKLQKDS 128 (157)
T ss_pred HHHHHHhHHHHHHHHHHHHHhH
Confidence 9999999999998888886643
No 61
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=63.18 E-value=62 Score=26.48 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHH
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
...++|.+|+++++.+...+..|++...|.+.-|+-.+.-.++..-+. +.. -...+....+++=++-=+.+|..|
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~--~~~---~~~~~~~~~~de~I~rEeeEIreL 251 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD--EES---EESSEDSVDTDEDIRREEEEIREL 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--ccc---ccccccchhHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999987666554443 211 111122223334344445556666
Q ss_pred Hhhhh
Q 033252 96 SYLVN 100 (123)
Q Consensus 96 ~kqi~ 100 (123)
+.++.
T Consensus 252 E~k~~ 256 (259)
T PF08657_consen 252 ERKKR 256 (259)
T ss_pred HHHHH
Confidence 65554
No 62
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.75 E-value=66 Score=24.49 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYIS 89 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~ 89 (123)
+...+..+-..+..+..-.+.+......|...+.|...+...|..++++. .+++...+....+++.
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~--------------L~~~l~~~~~~~~~~s 74 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGE--------------ITEPFKIFSESLSQFS 74 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchh--------------hhHHHHHHHHHHHHHH
Confidence 33444444555555666666666777778888888888888888888663 7778888888888888
Q ss_pred HHHHHHHhhhhHHHHH
Q 033252 90 AELYVSSYLVNWRFFA 105 (123)
Q Consensus 90 ~eik~l~kqi~~~~~~ 105 (123)
..+..+...++..|.-
T Consensus 75 ~~~~~l~~~~~~~f~~ 90 (185)
T cd07628 75 TSLRVLNKYTDENYLT 90 (185)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877753
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.22 E-value=1e+02 Score=26.53 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033252 75 AEANANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 75 ~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
......+++.+..|+.+++.++..+.....
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888888888888887774433
No 64
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=61.62 E-value=1e+02 Score=26.31 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=9.5
Q ss_pred HHHhHHHHHHHHHHHHhhhhHHHH
Q 033252 81 VRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 81 l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
|.+.+|.++.+++.-...|+|.-|
T Consensus 306 IseeLe~vK~emeerg~~mtD~sP 329 (359)
T PF10498_consen 306 ISEELEQVKQEMEERGSSMTDGSP 329 (359)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCH
Confidence 333444444444433333333333
No 65
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=61.21 E-value=73 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=30.3
Q ss_pred cchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 67 PVLVKQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 67 ~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
|--|+.|.++|+.--+.|+|+|.+.++.+..-+..
T Consensus 92 GYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 92 GYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKE 126 (153)
T ss_pred ceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999998766554
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.24 E-value=93 Score=25.34 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC--Cchhhhhccch-hhccHHHHHHHHHHhHHHHHHHHHH
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG--ANVYKLIGPVL-VKQDLAEANANVRKRIEYISAELYV 94 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d--~kvYKlVG~VL-Vkq~~~Ea~~~l~kRlE~I~~eik~ 94 (123)
..+|..|+.+++....++..|+.++.+...-.++|.+--.+ ..+-++.-.+. .+.+.++++..+.+-..-+......
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~ 167 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776665555555442111 11222211111 2334555555555555556666666
Q ss_pred HHhhhhHHHHHHH
Q 033252 95 SSYLVNWRFFAIF 107 (123)
Q Consensus 95 l~kqi~~~~~~~~ 107 (123)
+..-++..++..|
T Consensus 168 L~~~l~~ell~~y 180 (239)
T COG1579 168 LKEKLDPELLSEY 180 (239)
T ss_pred HHHhcCHHHHHHH
Confidence 6777777776665
No 67
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=59.00 E-value=74 Score=23.80 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=57.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHH
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIE 86 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE 86 (123)
...+..+......+=..++...+.+.....+|+.-..+...-|.=++.+++=.+-+..-|+.+...+-.+....|++=++
T Consensus 30 l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~ 109 (157)
T PF04136_consen 30 LDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLSRLDECLE 109 (157)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHHHHHHHHH
Confidence 33444445555555556666777777777777777777777777677777655555666666667777888888888888
Q ss_pred HHHH
Q 033252 87 YISA 90 (123)
Q Consensus 87 ~I~~ 90 (123)
|++.
T Consensus 110 Fl~~ 113 (157)
T PF04136_consen 110 FLEE 113 (157)
T ss_pred HHHH
Confidence 8875
No 68
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=57.24 E-value=88 Score=24.13 Aligned_cols=13 Identities=31% Similarity=0.043 Sum_probs=9.0
Q ss_pred HHhhcccccchhh
Q 033252 107 FLLFNISHLVSWK 119 (123)
Q Consensus 107 ~~~~~~~~~~~~~ 119 (123)
.--+||....||-
T Consensus 153 rwTDNI~~l~~~~ 165 (188)
T PF03962_consen 153 RWTDNIFSLKSYL 165 (188)
T ss_pred HHHhhHHHHHHHH
Confidence 3457888887773
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.17 E-value=1.4e+02 Score=29.03 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELV 48 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~V 48 (123)
++-++.++++.+|+.++.++..++.|..|+.-....
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 345566677777777777788888777777654443
No 70
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=54.39 E-value=1.2e+02 Score=24.77 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=35.7
Q ss_pred HHHHHHhcCcCCCCchhhhhccch--hhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 033252 46 ELVLKELGLLNEGANVYKLIGPVL--VKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFA 105 (123)
Q Consensus 46 ~~VleEL~~l~~d~kvYKlVG~VL--Vkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~ 105 (123)
+...++|+.++.| .+=.-+|.=. |+...+.+..+++.-.|-...+.+.+-+-|++-|+.
T Consensus 100 ~~Lq~~Lk~V~td-e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~V 160 (230)
T PF03904_consen 100 DILQDELKDVDTD-ELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFV 160 (230)
T ss_pred HHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566788888766 2222222222 234556666667777777777777777777776544
No 71
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.47 E-value=60 Score=21.07 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE 51 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE 51 (123)
++..++..+..-|.++++|.++-..-..++..|+|.+.=-.+
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777777766544333
No 72
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=52.78 E-value=47 Score=26.03 Aligned_cols=39 Identities=28% Similarity=0.214 Sum_probs=29.7
Q ss_pred Cchhhhh---cc---chhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 59 ANVYKLI---GP---VLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 59 ~kvYKlV---G~---VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
.++|.-| |. --|..-.++|..++.+|-+.|+.+-+++++
T Consensus 49 q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~ 93 (204)
T PF10368_consen 49 QELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEK 93 (204)
T ss_dssp HTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 53 566777899999999999999988777754
No 73
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=52.77 E-value=1.4e+02 Score=27.65 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhc--cHHHHHHHHHHhHHH-
Q 033252 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQ--DLAEANANVRKRIEY- 87 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq--~~~Ea~~~l~kRlE~- 87 (123)
|--...+..+|..|.++...|......|-.++-|-+= ..||+.+|.-+-+- +++..+.-+.+..+.
T Consensus 234 p~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW-----------~~vFr~l~~q~~~m~esver~~~kl~~~~~~~ 302 (683)
T PF08580_consen 234 PSACEELEDRYERLEKKWKKLEKEAESLKKELIEDRW-----------NIVFRNLGRQAQKMCESVERSLSKLQEAIDSG 302 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3334444555555555555544444444333333222 25888888776553 344444444444332
Q ss_pred --------HHHHHHHHHhhhhHHHHHH
Q 033252 88 --------ISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 88 --------I~~eik~l~kqi~~~~~~~ 106 (123)
+..+|+...+-+.-.|++|
T Consensus 303 ~~~~~~~~l~~~i~s~~~k~~~~~~~I 329 (683)
T PF08580_consen 303 IHLDNPSKLSKQIESKEKKKSHYFPAI 329 (683)
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHH
Confidence 7889999999999999988
No 74
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=52.51 E-value=14 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.6
Q ss_pred hhccchhhccHHHHHHHHHHhHHHHHHHHHHH
Q 033252 64 LIGPVLVKQDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 64 lVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
.=|+.|+.-|-.+.+..|++|++.|+.+++..
T Consensus 141 ~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~~ 172 (178)
T PRK06266 141 QCGEMLEEYDNSELIKELKEQIKELEEELKLN 172 (178)
T ss_pred CCCCCCeecccHHHHHHHHHHHHHHHHHhccc
Confidence 45999999999999999999999999988743
No 75
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.02 E-value=1.8e+02 Score=26.26 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCC--chh-----hhhccchhhccHHHHHHHHHHhHHHHHH
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGA--NVY-----KLIGPVLVKQDLAEANANVRKRIEYISA 90 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~--kvY-----KlVG~VLVkq~~~Ea~~~l~kRlE~I~~ 90 (123)
+.++|++.+.++.+.+++ +.--.+++....||+++++|. ++| -++|+ ++.-..|....+.++.+ +.+
T Consensus 344 ~~~IqeleqdL~a~~eei---~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn--iRKq~~DI~Kil~etre-Lqk 417 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEI---ESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN--IRKQEQDIVKILEETRE-LQK 417 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHH-HHH
Confidence 444555555555444443 334456778889999999974 333 34555 35556667777777665 577
Q ss_pred HHHHHHhhhhHHHHHH
Q 033252 91 ELYVSSYLVNWRFFAI 106 (123)
Q Consensus 91 eik~l~kqi~~~~~~~ 106 (123)
++.+...+++.+|--+
T Consensus 418 q~ns~se~L~Rsfavt 433 (521)
T KOG1937|consen 418 QENSESEALNRSFAVT 433 (521)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 8888888888888766
No 76
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=51.26 E-value=1.3e+02 Score=26.33 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchh-hhh---ccchh-----hccHHHHHHHHHHhHHHHHHHHHHH
Q 033252 25 QKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVY-KLI---GPVLV-----KQDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 25 Q~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvY-KlV---G~VLV-----kq~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
..+++++..++..+..|+.+.+.-+..++..++...-+ +-. ..-|. ....-......+++++.++.+|+.+
T Consensus 276 ~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~i~k~ 355 (391)
T smart00435 276 EKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKL 355 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555432221100 000 00000 0000112234456788899999999
Q ss_pred HhhhhHH
Q 033252 96 SYLVNWR 102 (123)
Q Consensus 96 ~kqi~~~ 102 (123)
+-|+.+.
T Consensus 356 ~~q~~~k 362 (391)
T smart00435 356 EVQATDK 362 (391)
T ss_pred HHHHHhh
Confidence 9888875
No 77
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=50.96 E-value=31 Score=22.37 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=26.6
Q ss_pred chhhccHHH-HHHHHHHhHHHHHHHHHHHHhhhhHH
Q 033252 68 VLVKQDLAE-ANANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 68 VLVkq~~~E-a~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
.++.+|.+- .+.+|++|+..++.||.++...+...
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443 46789999999999999998887653
No 78
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.89 E-value=2.1e+02 Score=26.68 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhc---cchhhc--cHHHHHHHHHHh
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIG---PVLVKQ--DLAEANANVRKR 84 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG---~VLVkq--~~~Ea~~~l~kR 84 (123)
+..+.+.++.++++++++...+......|...+.+..-..+.|.+ . =..|.+.++ |+|... +-.+=+..++.+
T Consensus 570 Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~-R-~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 570 LKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK-R-VDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 445566666777777777777766666666666666555555543 0 012333333 344433 333334566666
Q ss_pred HHHHHHHHHHHHhhhhHHHHH
Q 033252 85 IEYISAELYVSSYLVNWRFFA 105 (123)
Q Consensus 85 lE~I~~eik~l~kqi~~~~~~ 105 (123)
+..+...++.+++.++-+...
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665443
No 79
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.88 E-value=50 Score=29.39 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC--------Cchhhhhccchhhc--cHHHHHHHHHHhHHHHHHHH
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG--------ANVYKLIGPVLVKQ--DLAEANANVRKRIEYISAEL 92 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d--------~kvYKlVG~VLVkq--~~~Ea~~~l~kRlE~I~~ei 92 (123)
..+..+..+.+.....+.+..+....+++|...+.. ...|+-+.-.|... +.+.|.+.|+++++.|+...
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666555432 35788777777766 58999999999999999999
Q ss_pred HHHHhhhhH
Q 033252 93 YVSSYLVNW 101 (123)
Q Consensus 93 k~l~kqi~~ 101 (123)
..+......
T Consensus 182 ~~f~~l~~~ 190 (569)
T PRK04778 182 SQFVELTES 190 (569)
T ss_pred HHHHHHhcC
Confidence 888665543
No 80
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=50.10 E-value=82 Score=21.68 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
+..+++.-..++....++.+++.+..+.+.+..+|
T Consensus 51 ~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 51 LEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444333
No 81
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.32 E-value=1.7e+02 Score=28.59 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC--------cCCC-CchhhhhccchhhccHHHHHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL--------LNEG-ANVYKLIGPVLVKQDLAEANAN 80 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~--------l~~d-~kvYKlVG~VLVkq~~~Ea~~~ 80 (123)
...++..+....+.+..+++++...++-++.++.|++.-++++.. |... ..|| ++|.-| .++.+.+..
T Consensus 104 ~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf-~~~~~L--~nk~~~lt~ 180 (1265)
T KOG0976|consen 104 HESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF-MIGEDL--HDKNEELNE 180 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH-HHHHHH--hhhhhHHhH
Confidence 345566777788888999999999999999999999988877653 1111 2344 345444 244445555
Q ss_pred HHHhHHHHHHHHHHHHhh
Q 033252 81 VRKRIEYISAELYVSSYL 98 (123)
Q Consensus 81 l~kRlE~I~~eik~l~kq 98 (123)
++........+..+.+++
T Consensus 181 ~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 181 FNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555444
No 82
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.25 E-value=79 Score=27.99 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG 58 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d 58 (123)
.+-.+++....+|+.++++++++......++.++...+--++||+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~ 207 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQ 207 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcC
Confidence 34566777888888899999998888888999999999999999988764
No 83
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=49.25 E-value=1.2e+02 Score=26.60 Aligned_cols=69 Identities=20% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 27 DIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 27 ~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
+..-+...+.+|+.|+..++..+++++. .+++..++.=.. +...-...+.+|++++...++.++.....
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~-~~~~~~~~~~~~-----~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 232 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELEL-NPDDPELKSDIE-----ELERHISSLKERIEFLENMLEDLEDSESS 232 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3444557778888889999888888887 444444432111 22334567888999999999888766543
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.09 E-value=3.1e+02 Score=27.99 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhc-cchhhccHHHHHHHHHHhHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIG-PVLVKQDLAEANANVRKRIEYISA 90 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG-~VLVkq~~~Ea~~~l~kRlE~I~~ 90 (123)
.++...-.+++.++.++..+......+++++..+...+..++.. =.+-| |-|-..+..+...+...+++-.+.
T Consensus 383 eEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~------~~~~~~~~~SdEeLe~~LenF~aklee~e~ 456 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA------KQLCGLPDLTADNAEDWLEEFQAKEQEATE 456 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666666666666666666666666542 23445 556666677777777777777777
Q ss_pred HHHHHHhhhhHHHHHH
Q 033252 91 ELYVSSYLVNWRFFAI 106 (123)
Q Consensus 91 eik~l~kqi~~~~~~~ 106 (123)
++..++.++++.--.+
T Consensus 457 qL~elE~kL~~lea~l 472 (1486)
T PRK04863 457 ELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666554433
No 85
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=48.87 E-value=1.8e+02 Score=25.15 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-.+..++..+...|..+.++....+..+.+-.++. + ..-+-...+++++..++.+++.+..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~-----------~-~l~~~~~~l~~~~~~~~~~~~~~~~ 94 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDA-----------E-ALIAEVKELKEEIKALEAELDELEA 94 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555566655555554433211111 0 1222225677788888888888888
Q ss_pred hhhHHHHHHHHhhcccc
Q 033252 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
++..-. ..|-||-|
T Consensus 95 ~~~~~~---~~iPN~~~ 108 (425)
T PRK05431 95 ELEELL---LRIPNLPH 108 (425)
T ss_pred HHHHHH---HhCCCCCC
Confidence 877744 44555554
No 86
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.80 E-value=92 Score=21.84 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------------------hcCcCCCCchhh
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE--------------------------LGLLNEGANVYK 63 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE--------------------------L~~l~~d~kvYK 63 (123)
+....+....+++.+++++..+...+..++.-+...+.+.++ +=.+..+--|=+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~ 83 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEK 83 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEe
Confidence 334455555566666666666666666655555444444330 111233322223
Q ss_pred hhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 64 LIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 64 lVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
-+..+. .-.+.-+..++++++.++..+..+..+++--.
T Consensus 84 ~~~eA~--~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~ 121 (129)
T cd00584 84 DLEEAI--EFLDKKIEELTKQIEKLQKELAKLKDQINTLE 121 (129)
T ss_pred cHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 55667778888888888888888888877543
No 87
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=48.56 E-value=30 Score=21.53 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 73 DLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
|..||+.-|.+--++|+..++.++.||.+
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIae 30 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAE 30 (46)
T ss_dssp -------------THHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHH
Confidence 45566666666666666666666655554
No 88
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=48.52 E-value=1.6e+02 Score=24.43 Aligned_cols=43 Identities=21% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
+.+-.+..+...+....+++-+...=+.+|++|.+..+..|+.
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~ 155 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLET 155 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777777777888888888777765
No 89
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=48.32 E-value=56 Score=23.16 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=9.5
Q ss_pred HHHHHhHHHHHHHHHHHHhhhhH
Q 033252 79 ANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 79 ~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
..+..+++.|...-..+...+..
T Consensus 182 ~~~~~~l~~l~~~~~~l~~~~~~ 204 (213)
T cd00176 182 EEIEEKLEELNERWEELLELAEE 204 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.19 E-value=2.9e+02 Score=27.21 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHH
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEY 87 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~ 87 (123)
..++.+++..-.++..+...+..+.....++..++++...-+.++... --++-..+-.+.+..+.+..+.+.++.
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~-----klkl~~~l~~r~~le~~L~el~~el~~ 899 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE-----KLQIGTNLQRRQQFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554444444444444444444443333333211 111111333445666666666677777
Q ss_pred HHHHHHHHHhhhhHHHHHH
Q 033252 88 ISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 88 I~~eik~l~kqi~~~~~~~ 106 (123)
+..+++.++..+..--+.+
T Consensus 900 l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 900 LIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHhhhhhHHH
Confidence 7777777776666554444
No 91
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.14 E-value=1.1e+02 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHH
Q 033252 86 EYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 86 E~I~~eik~l~kqi~~~~~~~ 106 (123)
..|...+..+.++-+|+|..+
T Consensus 274 ~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 274 EKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHhCCeeEec
Confidence 345555555666666666555
No 92
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=45.75 E-value=1.1e+02 Score=21.78 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHhcCcCCCCchhhhhccc
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQ-LGENELVLKELGLLNEGANVYKLIGPV 68 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesq-l~E~~~VleEL~~l~~d~kvYKlVG~V 68 (123)
.+...+..++..|...-..+..+...|... --=-+.+-.++.-..||-.+|+++++.
T Consensus 57 ~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~~gEi~f~i~~~~ 114 (117)
T COG2919 57 RQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSKPGEIFFRLVKPS 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCCCCCEEEEecccc
Confidence 344444445555555555555555555444 111234556677777888888887764
No 93
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=45.34 E-value=1.2e+02 Score=22.92 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=33.1
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 033252 3 SAAALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGEN 45 (123)
Q Consensus 3 ~~~~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~ 45 (123)
...+++-+.+...++-...+.+++.++.+.+.+.++..++++.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777788888888888888888888888888777664
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.01 E-value=2.3e+02 Score=25.34 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC--------Cchhhhhccchhhc--cHHHHHHHHHHhHHHHHHHH
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG--------ANVYKLIGPVLVKQ--DLAEANANVRKRIEYISAEL 92 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d--------~kvYKlVG~VLVkq--~~~Ea~~~l~kRlE~I~~ei 92 (123)
..++.+..+......++.+.......+++|...+.. ...|+-+.--|... +.+.|.+.|+++++.|+...
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F 177 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEF 177 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555443332 35788888888777 58999999999999999999
Q ss_pred HHHHhhhhH
Q 033252 93 YVSSYLVNW 101 (123)
Q Consensus 93 k~l~kqi~~ 101 (123)
..+....++
T Consensus 178 ~~f~~lt~~ 186 (560)
T PF06160_consen 178 SEFEELTEN 186 (560)
T ss_pred HHHHHHHHC
Confidence 999888776
No 95
>COG5293 Predicted ATPase [General function prediction only]
Probab=44.77 E-value=1.5e+02 Score=27.00 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHHHHhcCcCCC--Cchhhhhccc---hhhccHHHHHH----HHHHhHHHHHHHHHHHHhhh
Q 033252 38 YTIQLGENELVLKELGLLNEG--ANVYKLIGPV---LVKQDLAEANA----NVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 38 Lesql~E~~~VleEL~~l~~d--~kvYKlVG~V---LVkq~~~Ea~~----~l~kRlE~I~~eik~l~kqi 99 (123)
...+.+-.+.-+++=..-.|| -++|--||.. +|+++.+++.. -++.|.+|+..+|+.+..-+
T Consensus 281 ~q~~~~~~~~slk~~~~~~pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dL 351 (591)
T COG5293 281 MQSHWKRVKTSLKEQILFCPDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDL 351 (591)
T ss_pred HHHHHHHHhhcchhhccCChHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555552222334 4789999955 68888888764 68899999999998875433
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.63 E-value=1.3e+02 Score=22.26 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 77 ANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 77 a~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
....+.+|++.++...+.+.+.+.+-+
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 97
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=43.06 E-value=1.2e+02 Score=21.68 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 75 AEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 75 ~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
+.+......+...++.++..+...+.|
T Consensus 90 ~~~e~sw~~qk~~le~e~~~~~~r~~d 116 (132)
T PF07926_consen 90 EESEASWEEQKEQLEKELSELEQRIED 116 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555544443
No 98
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=42.09 E-value=2.8e+02 Score=25.55 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=55.7
Q ss_pred HhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHH
Q 033252 9 ELQRELETKANDLSKLQKDI------------GKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAE 76 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~l------------q~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~E 76 (123)
.+...+-.++.++|+|+.|+ +.|+..|.-+|.+....+.|-.|.+- |-|-=.|--.-+. .|=
T Consensus 42 K~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~~L~d~RrlIE~~MErfK~vEke~Kt-----Ka~SkegL~~~~k-lDP 115 (575)
T KOG2150|consen 42 KLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKDSLLDNRRLIEQRMERFKAVEKEMKT-----KAFSKEGLSAAEK-LDP 115 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccchhhcccccc-CCh
Confidence 35567888999999999987 46788888889999888888888763 4454444322221 122
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhh
Q 033252 77 ANANVRKRIEYISAELYVSSYLVN 100 (123)
Q Consensus 77 a~~~l~kRlE~I~~eik~l~kqi~ 100 (123)
...+=.+-.++|...|..|++|++
T Consensus 116 kEkek~d~~~wi~~~ideLe~q~d 139 (575)
T KOG2150|consen 116 KEKEKRDTMDWISNQIDELERQVD 139 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223445666666666666654
No 99
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=41.89 E-value=1.1e+02 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
+-...++++.+|+.+..+..++.+|++|+.-.-.--++|.
T Consensus 139 lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455788999999999999999999999876554444444
No 100
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=41.86 E-value=79 Score=22.44 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
.++..+..+...+....+.+-....-+++|.+|.+..|+.++.
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888889999999999888877765
No 101
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=41.55 E-value=49 Score=26.96 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGENELVLKE 51 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleE 51 (123)
....++..|+.+|.++|+|++|+..||+.
T Consensus 18 ~~~~~~~eLm~~K~eiE~qin~~~~vL~~ 46 (231)
T KOG3129|consen 18 NTKSELKELMDKKTEIETQINELVEVLEN 46 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567888999999999999999999964
No 102
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=41.45 E-value=1.8e+02 Score=24.16 Aligned_cols=43 Identities=19% Similarity=0.077 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
..++....+|+..+.++..+......-..++.+....++++-.
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~ 126 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYE 126 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999998888888888877777653
No 103
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.36 E-value=1.7e+02 Score=22.75 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHH---HHHHHhHHHHHHHH
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEAN---ANVRKRIEYISAEL 92 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~---~~l~kRlE~I~~ei 92 (123)
..-.++..++.....+..++.+|+.++.+.+.-..+|.-=-..+.--+-+...+-.-+.+.+. ..+++|.+-++.+-
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~a 182 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQA 182 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555444322111222223333333334444443 34667777776666
Q ss_pred HHH
Q 033252 93 YVS 95 (123)
Q Consensus 93 k~l 95 (123)
...
T Consensus 183 ea~ 185 (219)
T TIGR02977 183 ESY 185 (219)
T ss_pred HHh
Confidence 554
No 104
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.09 E-value=1.3e+02 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN 56 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~ 56 (123)
...+..++...|+++...+..+..+++.-..||+...+-|+.-.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 35566666777777777777777777777777766666555433
No 105
>PHA00489 scaffolding protein
Probab=41.01 E-value=95 Score=22.10 Aligned_cols=12 Identities=17% Similarity=0.764 Sum_probs=9.9
Q ss_pred CCCchhhhhccc
Q 033252 57 EGANVYKLIGPV 68 (123)
Q Consensus 57 ~d~kvYKlVG~V 68 (123)
.++++|+.+||-
T Consensus 63 sNskLFrqlg~t 74 (101)
T PHA00489 63 SNSKLFRQLGPT 74 (101)
T ss_pred hhHHHHHHcCCc
Confidence 358999999984
No 106
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.43 E-value=1.8e+02 Score=22.88 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
.+....+|-.++.++..+..++.+|..-+..-+.+-+-| ..+..+..+...+|.++.+++
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l--------------------~ie~~L~~v~~eIe~~~~~~~ 186 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLL--------------------EIERELSRVRSEIEQLEGQLK 186 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666665555433222211 234445566777777777777
Q ss_pred HHHhhhhH
Q 033252 94 VSSYLVNW 101 (123)
Q Consensus 94 ~l~kqi~~ 101 (123)
.++.+++.
T Consensus 187 ~l~~~v~~ 194 (262)
T PF14257_consen 187 YLDDRVDY 194 (262)
T ss_pred HHHHhhce
Confidence 77776654
No 107
>PLN02678 seryl-tRNA synthetase
Probab=40.30 E-value=2.6e+02 Score=24.63 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-++..++..+...|.++.+++...+..+..-.++. ...-+-...|++.+..++.+++.+..
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~------------~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA------------TELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554433211111 11112234567777777777777777
Q ss_pred hhhHHHHHHHHhhcccc
Q 033252 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
++..-+ ..|-||-|
T Consensus 100 ~l~~~~---~~iPNi~~ 113 (448)
T PLN02678 100 ALDAKL---KTIGNLVH 113 (448)
T ss_pred HHHHHH---HhCCCCCC
Confidence 777543 34555555
No 108
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=40.02 E-value=1.4e+02 Score=21.52 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 91 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~e 91 (123)
-++...+.+|.++|+++..+...|..-..+.+|...-|+.+= |+ |-.=|++........|...--.++.+
T Consensus 19 s~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aF---P~-------G~~~~~qE~~k~m~~i~~~FKQLEt~ 88 (107)
T PRK15365 19 MQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLF---PQ-------GVAGVNQEAEKDLKKIVSLFKQLEVR 88 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---cc-------hhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888887776665543 22 33345777777777777655566666
Q ss_pred HHHHHhh
Q 033252 92 LYVSSYL 98 (123)
Q Consensus 92 ik~l~kq 98 (123)
++.++-|
T Consensus 89 LKnlnt~ 95 (107)
T PRK15365 89 LKQLNAQ 95 (107)
T ss_pred HHhcCCC
Confidence 6655444
No 109
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=39.38 E-value=54 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 77 ANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 77 a~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
.+.+|++|+-.+..+|.+++.+.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999988753
No 110
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=38.98 E-value=41 Score=29.52 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.1
Q ss_pred hhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 033252 64 LIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLF 110 (123)
Q Consensus 64 lVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~ 110 (123)
+..|+|.-.+...+...|+.|....+..=.++-.+|-.+|++|...|
T Consensus 207 vaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF 253 (405)
T PF02101_consen 207 VANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVF 253 (405)
T ss_pred HhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999995433
No 111
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=38.79 E-value=1.2e+02 Score=20.15 Aligned_cols=64 Identities=22% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhh
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYL 98 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kq 98 (123)
..|...-+++=.+.+++.-|+++..+.+..- .+....|..|++-+..++...-..
T Consensus 4 ~~Yd~~lqe~~al~sK~A~Leaek~~~eL~~-------------------------seeY~eL~~ri~~lr~~ld~~~~~ 58 (71)
T PF08663_consen 4 SEYDDQLQEYFALASKRAVLEAEKSEAELEE-------------------------SEEYQELEDRIEELRAELDDTLDE 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhc-------------------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777778888899999998888766532 356789999999999999999999
Q ss_pred hhH-HHHHHH
Q 033252 99 VNW-RFFAIF 107 (123)
Q Consensus 99 i~~-~~~~~~ 107 (123)
|++ .|...|
T Consensus 59 ~d~~Df~~~f 68 (71)
T PF08663_consen 59 FDDDDFEAAF 68 (71)
T ss_pred cchhHHHHHH
Confidence 987 455555
No 112
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.74 E-value=1.6e+02 Score=26.05 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGE 44 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E 44 (123)
+|+.++..+-..+.+++.++.+
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~ 84 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIE 84 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 113
>PF14282 FlxA: FlxA-like protein
Probab=38.07 E-value=98 Score=21.65 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 033252 28 IGKNHQVRKKYTIQLGEN 45 (123)
Q Consensus 28 lq~l~~qr~qLesql~E~ 45 (123)
.+.|..++..|++|+...
T Consensus 53 ~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 114
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=37.60 E-value=1.1e+02 Score=19.69 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
.++-+..|+.|+-|.+..|+.|+..+..++-.|
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I 34 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQI 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888999988888888776
No 115
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=37.60 E-value=3.4e+02 Score=25.14 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhc-cchhhccHHHH---HHHHHHhHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIG-PVLVKQDLAEA---NANVRKRIEY 87 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG-~VLVkq~~~Ea---~~~l~kRlE~ 87 (123)
.+++.+..+|..|...+..+...-.+|+++|.- .++++..=|+.|- .|+-+-.+-.- .-+=+.|-||
T Consensus 508 ~dF~~eY~EYreLharve~vs~rF~~Lea~L~s---------rls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceY 578 (604)
T KOG4796|consen 508 KDFEAEYDEYRELHARVETVSRRFRQLEAQLKS---------RLSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEY 578 (604)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHH
Confidence 568889999999999999999999999999872 4455555554442 22222111111 1123458888
Q ss_pred HHHHHHHHHhhhhH
Q 033252 88 ISAELYVSSYLVNW 101 (123)
Q Consensus 88 I~~eik~l~kqi~~ 101 (123)
|...|.-++.+|.+
T Consensus 579 LhsKLaHIK~lI~e 592 (604)
T KOG4796|consen 579 LHSKLAHIKTLIGE 592 (604)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
No 116
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=37.06 E-value=58 Score=22.21 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN 56 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~ 56 (123)
|=.++.+.+|+.|-..+.++......|.+--+-...+++.|..++
T Consensus 3 pLEq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE 47 (78)
T PF08656_consen 3 PLEQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELE 47 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 456788999999999999988888888433333445555555443
No 117
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=36.57 E-value=1.2e+02 Score=21.61 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHHhcCcCCCCchhhhh
Q 033252 45 NELVLKELGLLNEGANVYKLI 65 (123)
Q Consensus 45 ~~~VleEL~~l~~d~kvYKlV 65 (123)
++-.++.+....+|..||+..
T Consensus 16 vEqILEDv~~A~~~DpVFt~l 36 (97)
T PF15136_consen 16 VEQILEDVRGAPPDDPVFTIL 36 (97)
T ss_pred HHHHHHHHhcCCCCCCeeeee
Confidence 456789999999999999998
No 118
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.32 E-value=2.6e+02 Score=23.40 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=32.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG 58 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d 58 (123)
...+......+....+.+..-+-.+....+.|..+++....+.+|++..+|+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~ 204 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT 204 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHH
Confidence 3444444555555555555666666666677777777777777777666654
No 119
>PRK09039 hypothetical protein; Validated
Probab=36.27 E-value=2.6e+02 Score=23.47 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
..+..++.+.-..|...+-++..+.+++..|..|+...+..+++.+.
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777778888888888888888888888877777775
No 120
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.12 E-value=1.4e+02 Score=24.47 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccch
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVL 69 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VL 69 (123)
..++...+.+.|+.++..+......+++=.+||+...+.|+.-...+.-....++|+
T Consensus 67 ~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi 123 (284)
T COG1792 67 SLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVI 123 (284)
T ss_pred HhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEE
Confidence 345666677777888888888788888888888888877776544433444444444
No 121
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.03 E-value=1.4e+02 Score=25.21 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHh-cCcCCCCchhhhhccchhhccHHHHHHHHHHhH
Q 033252 8 RELQRELETKANDLSKLQK-DIGKNHQVRKKYTIQLGENELVLKEL-GLLNEGANVYKLIGPVLVKQDLAEANANVRKRI 85 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~-~lq~l~~qr~qLesql~E~~~VleEL-~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRl 85 (123)
..|-+.++.+-.+..-|+. .+..+....+.|..++.+........ ...+.+.||=.+-+-+=.=.....++|.|-+|+
T Consensus 242 ~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL 321 (388)
T PF04912_consen 242 SPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL 321 (388)
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3444555555555555532 45555555555555555544443333 333344454333333323334455566666665
Q ss_pred HHHH
Q 033252 86 EYIS 89 (123)
Q Consensus 86 E~I~ 89 (123)
..|.
T Consensus 322 ~tL~ 325 (388)
T PF04912_consen 322 KTLK 325 (388)
T ss_pred HHHH
Confidence 5543
No 122
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.68 E-value=92 Score=29.26 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL 55 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l 55 (123)
+.++..-......++.++..+||+|.+++.|...++|||+.+
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445555556677788889999999999999999999999874
No 123
>PRK00736 hypothetical protein; Provisional
Probab=35.43 E-value=1.3e+02 Score=19.60 Aligned_cols=33 Identities=9% Similarity=0.002 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
.++-+..|+.|+-|.+.-|..|++.|..++-.|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i 35 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTV 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999888666
No 124
>PRK09039 hypothetical protein; Validated
Probab=34.57 E-value=2.8e+02 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=24.9
Q ss_pred hccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 65 IGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 65 VG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
-+.|++..+..+..+.=...++.+-..++...+
T Consensus 223 ~~~vlF~~gsa~L~~~~~~~L~~ia~~l~~~~~ 255 (343)
T PRK09039 223 QSEVLFPTGSAELNPEGQAEIAKLAAALIELAK 255 (343)
T ss_pred cCCceeCCCCcccCHHHHHHHHHHHHHHHHhhh
Confidence 345888888888888888878777777776644
No 125
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.49 E-value=85 Score=22.68 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=33.0
Q ss_pred hccchhhccHHHH--HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 033252 65 IGPVLVKQDLAEA--NANVRKRIEYISAELYVSSYLVNWRFFAIFLLF 110 (123)
Q Consensus 65 VG~VLVkq~~~Ea--~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~ 110 (123)
||-++.+...... ...+++.++-.+.++......+++.|-..-.|+
T Consensus 12 iG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll 59 (128)
T PF06295_consen 12 IGFLIGRLTSSNQQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELL 59 (128)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433332 368889999999999999999999998764443
No 126
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.14 E-value=76 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.5
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhh
Q 033252 71 KQDLAEANANVRKRIEYISAELYVSSYL 98 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kq 98 (123)
+.+..++...+.+|.+.+..++++++.+
T Consensus 13 ~~t~~d~~~~l~~r~~~l~kKi~~ld~E 40 (211)
T PTZ00464 13 KPTLEDASKRIGGRSEVVDARINKIDAE 40 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999888888754
No 127
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=34.13 E-value=43 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=29.8
Q ss_pred hccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 65 IGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 65 VG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
-|..|+.-|..+.+..+.++++.|+.+++...+
T Consensus 138 Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 138 CGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 499999999999999999999999999987654
No 128
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.72 E-value=1.9e+02 Score=25.98 Aligned_cols=35 Identities=3% Similarity=0.074 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENEL 47 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~ 47 (123)
...++-.+|..++++++.+..+++.++..+++.+.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344444444555555444555555544443333
No 129
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=33.61 E-value=1.4e+02 Score=20.35 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCc
Q 033252 22 SKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGAN 60 (123)
Q Consensus 22 q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~k 60 (123)
..++++-..+-..+++|+++|.++..-..=.++++.+..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~diPe~kv 41 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKEDIPEKKV 41 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccC
Confidence 356666667777777888888887665433555554433
No 130
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.45 E-value=1.4e+02 Score=24.00 Aligned_cols=55 Identities=29% Similarity=0.327 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhcCcCCC---Cchhhhhccchhhc-cHHHHHHHHHHhHHH
Q 033252 33 QVRKKYTIQLGENELVLKELGLLNEG---ANVYKLIGPVLVKQ-DLAEANANVRKRIEY 87 (123)
Q Consensus 33 ~qr~qLesql~E~~~VleEL~~l~~d---~kvYKlVG~VLVkq-~~~Ea~~~l~kRlE~ 87 (123)
.....+..|+...+..++.|+...++ +.+.-+-|.+|+-+ ++++|+..-++=++.
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 45678999999999999999998776 56788999999887 788888877765554
No 131
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=33.39 E-value=69 Score=22.12 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=33.6
Q ss_pred hhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 033252 63 KLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 63 KlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi 99 (123)
.=.||+..-|-..+|..-+.+|++-++.++-.++|.+
T Consensus 44 ~elGpyfYNQGi~da~a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 44 GELGPYFYNQGIKDARAVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred hhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4479999999999999999999999999999888764
No 132
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.22 E-value=2.2e+02 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
.++...++++|+.+...+..+...+..+|.+....|..+
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666666666665544
No 133
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=33.12 E-value=2e+02 Score=23.58 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhh
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYK 63 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYK 63 (123)
++.+..-..++.|.....+-...+++|+.+|.+.+.++ .+.||.
T Consensus 67 ~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iL--------tta~fq 110 (272)
T KOG4552|consen 67 PEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVIL--------TTACFQ 110 (272)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 44555566677888888888889999999999999988 456775
No 134
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=33.05 E-value=2.5e+02 Score=22.36 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhcc-HHHHHHHHHHhHHHHHHH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD-LAEANANVRKRIEYISAE 91 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~-~~Ea~~~l~kRlE~I~~e 91 (123)
+++.--+++++...+.+-+-.+...++.++.+....+..+....++.-++..-.++=+... -.++...+....|-+..+
T Consensus 67 ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~ae 146 (202)
T PF06818_consen 67 ELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAE 146 (202)
T ss_pred hHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHH
Confidence 4444455566666666666677777777777777666665222222222221122222222 134566777888888888
Q ss_pred HHHHHhhhhH
Q 033252 92 LYVSSYLVNW 101 (123)
Q Consensus 92 ik~l~kqi~~ 101 (123)
|.......++
T Consensus 147 L~~er~~~e~ 156 (202)
T PF06818_consen 147 LQRERQRREE 156 (202)
T ss_pred HHHHHHhHHH
Confidence 8776655443
No 135
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=32.91 E-value=85 Score=23.60 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033252 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
++.|+++.+++.++.+|+ .+.....++.|...+-+.|
T Consensus 3 sLeP~iE~LInrInelQQ-------aKKk~~EELgEa~~l~eaL 39 (134)
T PF15233_consen 3 SLEPQIEDLINRINELQQ-------AKKKSSEELGEAQALWEAL 39 (134)
T ss_pred CccchHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHH
Confidence 466888889988888887 4555566666666655433
No 136
>PRK04325 hypothetical protein; Provisional
Probab=32.55 E-value=1.5e+02 Score=19.57 Aligned_cols=34 Identities=3% Similarity=0.044 Sum_probs=28.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 73 DLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+..+-+.+|+.|+-|.+..|..|++.|..++--|
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I 39 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL 39 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688899999999999999999999998666
No 137
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.49 E-value=63 Score=17.27 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 033252 27 DIGKNHQVRKKYTIQLGENE 46 (123)
Q Consensus 27 ~lq~l~~qr~qLesql~E~~ 46 (123)
+++.+-..+..|+.||+++.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45566677888888888764
No 138
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.26 E-value=4.3e+02 Score=26.74 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCC---------chhhhhccchhh-ccHHHHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGA---------NVYKLIGPVLVK-QDLAEANA 79 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~---------kvYKlVG~VLVk-q~~~Ea~~ 79 (123)
...+.+..=.+.-..++.+..+.+.+.+|+.++.+...-..|+++.++++ .+=++-+-.... ...++...
T Consensus 389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~ 468 (1293)
T KOG0996|consen 389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILD 468 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566667788899999999999999999999999999988763 223333333332 35777888
Q ss_pred HHHHhHHHHHHHHHHHHhhhh
Q 033252 80 NVRKRIEYISAELYVSSYLVN 100 (123)
Q Consensus 80 ~l~kRlE~I~~eik~l~kqi~ 100 (123)
.++.+-+.|..++..+.+-+.
T Consensus 469 ~l~~~t~~~~~e~~~~ekel~ 489 (1293)
T KOG0996|consen 469 SLKQETEGIREEIEKLEKELM 489 (1293)
T ss_pred HHhhhhhhhHHHHHHHHHHHH
Confidence 888888888888777765544
No 139
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.08 E-value=1.3e+02 Score=19.19 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
.+..++.++.+....+..+.++....++++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444444333333
No 140
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=31.93 E-value=81 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=33.4
Q ss_pred CchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 033252 59 ANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVN 100 (123)
Q Consensus 59 ~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~ 100 (123)
+.||+=.|.+.++| ++.+.+++-+++.+.-.++.-+|++.
T Consensus 208 n~IF~dL~~lV~eQ--G~lVdrID~Ni~~t~~n~k~A~kEL~ 247 (283)
T COG5325 208 NEIFRDLGSLVGEQ--GELVDRIDFNIENTSDNLKNANKELE 247 (283)
T ss_pred HHHHHHHHHHHHHh--hhhhhHHhhhhhhhhHHHHhhHHHHH
Confidence 46888889888776 67888999999999988888888875
No 141
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=31.40 E-value=1.6e+02 Score=25.79 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
-..+++...+||....++..+.....+-...|.+...+++++-.
T Consensus 129 ~~siqe~~~kYQt~~~~id~I~~~l~k~kd~L~~dn~~Le~l~~ 172 (386)
T COG3853 129 KSSIQEIFSKYQTIGAQIDRIIESLSKGKDELTRDNKMLELLYE 172 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHH
Confidence 35799999999999999999999999999999999999988864
No 142
>COG5570 Uncharacterized small protein [Function unknown]
Probab=31.38 E-value=72 Score=20.55 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhh
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi 99 (123)
-+.++.+|+.|+=-|+.+|+.++-|+
T Consensus 31 dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 31 DDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccC
Confidence 36788999999999999999998775
No 143
>PRK02224 chromosome segregation protein; Provisional
Probab=31.25 E-value=4.2e+02 Score=24.40 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE 51 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE 51 (123)
.++..++.++..+...+..+..++...+..+.+
T Consensus 213 ~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~e 245 (880)
T PRK02224 213 SELAELDEEIERYEEQREQARETRDEADEVLEE 245 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444433333
No 144
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.19 E-value=1.2e+02 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCC
Q 033252 21 LSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGA 59 (123)
Q Consensus 21 ~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~ 59 (123)
+..+.+.++..+..-.-||+++.|-+....++..|.|+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~ 40 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDEL 40 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888877764
No 145
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=31.19 E-value=3.8e+02 Score=23.87 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=30.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHh
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQV----------RKKYTIQLGENELVLKEL 52 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~q----------r~qLesql~E~~~VleEL 52 (123)
...++..+...-.+.+.+..++..+... ...++.++++.+...+++
T Consensus 312 ~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~ 367 (569)
T PRK04778 312 SDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEI 367 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667777777777666 677777777776666643
No 146
>PF03532 OMS28_porin: OMS28 porin; InterPro: IPR000839 The outer membrane-spanning (Oms) proteins of Borrelia burgdorferi have been isolated and their porin activities characterised; 0.6-nS porin activity was found to reside in a 28kDa protein, designated Oms28 []. The gene sequence of oms28 was found to encode a 257-amino-acid precursor protein with a putative 24-amino-acid leader peptidase I signal sequence []. The Oms28 protein partly fractionated to the outer membrane, and was characterised by an average single-channel conductance of 1.1 nS in a planar lipid bilayer assay, confirming Oms28 to be a porin [].
Probab=31.17 E-value=2.8e+02 Score=22.24 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKR 84 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kR 84 (123)
-.+|-...+--..++..-.-|+.-.+|...|+.-++.|.|..+ ..++.+.|+..|+.++-+-
T Consensus 176 keef~kve~vketlmase~aldet~qeaqkvln~vnglnpsnk-----dq~~akkdv~kais~vvkv 237 (253)
T PF03532_consen 176 KEEFAKVEQVKETLMASERALDETVQEAQKVLNIVNGLNPSNK-----DQVVAKKDVAKAISNVVKV 237 (253)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCcc-----chhhhHHHHHHHHHHHHHH
Confidence 4556666666677788888899999999999999999999876 4677888888888887654
No 147
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.14 E-value=3.7e+02 Score=23.75 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+.+...++.++...+.....++++|+.++.+.+.=+..++. . |+ .-..-...++++++.++..+.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~-----q--------l~--~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEA-----Q--------LI--ETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--------HH--HHHhHHHHHHhhHHHHHHHHH
Confidence 33344444455555555555566666666555544443332 0 00 012224456666677777766
Q ss_pred HHHhhh
Q 033252 94 VSSYLV 99 (123)
Q Consensus 94 ~l~kqi 99 (123)
.+..|=
T Consensus 105 ~l~~q~ 110 (420)
T COG4942 105 ALEVQE 110 (420)
T ss_pred HHHHHH
Confidence 666555
No 148
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.05 E-value=2.3e+02 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLG 43 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~ 43 (123)
+..++.++|+++|+......++..++..-++
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~ 35 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQD 35 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555555555444333
No 149
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.98 E-value=1.2e+02 Score=20.74 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 21 LSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 21 ~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
+..+..++++.-.++..+...+.+.+.-+.|+++
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 150
>PRK10869 recombination and repair protein; Provisional
Probab=30.97 E-value=2.5e+02 Score=25.05 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE 57 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~ 57 (123)
+-..++....+|+.+..++..+.........++...+--++||+.+++
T Consensus 155 ~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l 202 (553)
T PRK10869 155 LLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAP 202 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445677778888888888888888877777777777777888877765
No 151
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=30.90 E-value=1.7e+02 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhcCcCCCCchh
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQL----GENELVLKELGLLNEGANVY 62 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql----~E~~~VleEL~~l~~d~kvY 62 (123)
+...+|+...+.|+++.+|+++.+--..|++-+ .|.+..-+-|+.|..=++||
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~ 166 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAH 166 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445677777777888888887777666555543 45555555666666666666
No 152
>PRK14127 cell division protein GpsB; Provisional
Probab=30.64 E-value=2.1e+02 Score=20.59 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=33.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033252 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE 51 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE 51 (123)
..++..=+...+..|..+..+...+..+...|+.++.+.+.=...
T Consensus 25 ~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555567778888888888888888888888888877775443
No 153
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.31 E-value=4.9e+02 Score=25.88 Aligned_cols=24 Identities=33% Similarity=0.173 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 78 NANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
+..+.++++++..+|+.+++-=+|
T Consensus 445 i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 445 ILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 456778888888888887765443
No 154
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=30.10 E-value=1e+02 Score=20.73 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQ 33 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~ 33 (123)
|.++..+..|+.+|.+++....
T Consensus 33 ~e~~~l~~~f~~~q~~~~~~q~ 54 (108)
T PF06133_consen 33 PEAQKLIEEFQKLQQELQNAQM 54 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888889988888876543
No 155
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=29.81 E-value=2.5e+02 Score=25.80 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=32.8
Q ss_pred HHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033252 4 AAALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 4 ~~~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
|+.+..++..++....+..+++++..++.+++..+.-.+..+-+=.+|+.
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~ 260 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELD 260 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555566677777777777777777777777766666655555555443
No 156
>PHA02115 hypothetical protein
Probab=29.01 E-value=28 Score=24.65 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhh--HHHHHHHHhhcccccchhhhcc
Q 033252 87 YISAELYVSSYLVN--WRFFAIFLLFNISHLVSWKYEL 122 (123)
Q Consensus 87 ~I~~eik~l~kqi~--~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
+|.++|..++|||+ ++-|++-..-.|-.-|.|.|-+
T Consensus 2 niqkeiqe~~k~~gveasefk~p~iwki~rkpgwsyg~ 39 (105)
T PHA02115 2 NIQKEIQEIEKRLGVEASEFKMPSVWKVARKPGWSYGA 39 (105)
T ss_pred cHHHHHHHHHHHhCcchhhccCccHHhhhcCCCCccce
Confidence 46788889999986 6778887778888889998854
No 157
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=29.00 E-value=70 Score=23.40 Aligned_cols=48 Identities=17% Similarity=-0.005 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhh
Q 033252 73 DLAEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVSWKY 120 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~~~~~~~~~ 120 (123)
........+..|+++++..|..+-..--+.+++-.-+.-...+++||.
T Consensus 36 ~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G~v~~R~ 83 (149)
T PF07352_consen 36 WYEAEIAPLQNRIEYLEGLLQAYAEANRDELTKKKSLKLPFGTVGFRK 83 (149)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-----EE-SS-EE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcccceEEEcCCeeEEEEe
Confidence 344555788899999999999988877777776666666677778874
No 158
>PRK11677 hypothetical protein; Provisional
Probab=28.78 E-value=1.4e+02 Score=22.21 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.9
Q ss_pred hccchhhccHH--HHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 033252 65 IGPVLVKQDLA--EANANVRKRIEYISAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 65 VG~VLVkq~~~--Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~ 107 (123)
||-++.+-... .-...+++.+|....+++....++++.|-.--
T Consensus 16 iG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA 60 (134)
T PRK11677 16 IGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVSHFARSA 60 (134)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444322 24578999999999999999999999997653
No 159
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.75 E-value=1.6e+02 Score=23.37 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE 57 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~ 57 (123)
.-..+..+.+++++...+..+..+|..++.+.+...+|.+.|..
T Consensus 64 ~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 64 VFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888888888877777766543
No 160
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=28.38 E-value=1.7e+02 Score=18.84 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH-HHhhc
Q 033252 73 DLAEANANVRKRIEYISAELYVSSYLVNWRFFAI-FLLFN 111 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~-~~~~~ 111 (123)
+..|+..+|.++.+.++.-=+++.. +|-+|-.. |||.=
T Consensus 9 eL~D~~~~L~~n~~~L~~ihesL~~-FNESFasfLYGl~m 47 (58)
T PF08653_consen 9 ELSDSMETLDKNMEQLNQIHESLSD-FNESFASFLYGLNM 47 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5778899999999999888888888 88888765 66653
No 161
>PRK10698 phage shock protein PspA; Provisional
Probab=28.29 E-value=3e+02 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHH
Q 033252 81 VRKRIEYISAELYVS 95 (123)
Q Consensus 81 l~kRlE~I~~eik~l 95 (123)
+++|++-++.+.+.+
T Consensus 171 mE~ki~~~Ea~aea~ 185 (222)
T PRK10698 171 FERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHhHh
Confidence 666666666666654
No 162
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.00 E-value=2e+02 Score=19.56 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKE 51 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE 51 (123)
.+...++..+..+..++.++..+++.....+++
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555554444444433
No 163
>PF13514 AAA_27: AAA domain
Probab=27.82 E-value=4.8e+02 Score=25.19 Aligned_cols=89 Identities=17% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC----CchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG----ANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d----~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
..+.....+++++.+++.+..++..+..+++..+.+..-+..+..- ..+=-+-....++.+-.+-...+..++..+
T Consensus 175 ~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~ 254 (1111)
T PF13514_consen 175 EYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPEDGAERLEQLEEELAEA 254 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444432222111110 111111223345555555555555555555
Q ss_pred HHHHHHHHhhhhH
Q 033252 89 SAELYVSSYLVNW 101 (123)
Q Consensus 89 ~~eik~l~kqi~~ 101 (123)
..++..+...+..
T Consensus 255 ~~~l~~~~~~~~~ 267 (1111)
T PF13514_consen 255 QAQLERLQEELAQ 267 (1111)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 164
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.79 E-value=5.6e+02 Score=25.48 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhh--ccHHHHHHHHHHhHHHHHHHHH
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVK--QDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVk--q~~~Ea~~~l~kRlE~I~~eik 93 (123)
..-.++..+++.+..+.....+++.+.++...=+.+++. ....|=|.||..=-. ++...=.+.+.+.++.|+.+++
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~--~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve 411 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK--EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE 411 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 334455555555555555555566666555555555543 223344555543211 1223333344444444444444
Q ss_pred HHHhhh
Q 033252 94 VSSYLV 99 (123)
Q Consensus 94 ~l~kqi 99 (123)
.+..|+
T Consensus 412 k~e~~~ 417 (1074)
T KOG0250|consen 412 KLEEQI 417 (1074)
T ss_pred HHHHHH
Confidence 444433
No 165
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.69 E-value=3.9e+02 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 25 QKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 25 Q~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
..+++.+..+...+..++.+.+..+..+.+
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333344444444445555555555555544
No 166
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=27.66 E-value=1.7e+02 Score=18.67 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=27.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTI 40 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLes 40 (123)
.|.++-.+.+..+.++.++..-++.+...+.++|.
T Consensus 18 ~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 18 QMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 56666677778888888888888888888887764
No 167
>smart00338 BRLZ basic region leucin zipper.
Probab=27.19 E-value=1.6e+02 Score=18.28 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYT 39 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLe 39 (123)
-.+.+.|..+-..+..+...|.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 168
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=27.10 E-value=4.6e+02 Score=23.51 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=65.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHhcCcC---CCCchhhhhcc-chhh
Q 033252 8 RELQRELETKANDLSKLQKDI------------GKNHQVRKKYTIQLGENELVLKELGLLN---EGANVYKLIGP-VLVK 71 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~l------------q~l~~qr~qLesql~E~~~VleEL~~l~---~d~kvYKlVG~-VLVk 71 (123)
+.+.-.+..++.++|.++.++ +.++..|.-+|+-..|.+.|-.+++.-. ++-.+--.+.| -+-+
T Consensus 31 ekle~dlk~~ikklq~~rdqiktw~s~~dikdk~~l~~nrrlie~~me~fk~ve~~mk~k~fske~ls~~~~~dpke~~k 110 (548)
T COG5665 31 EKLESDLKREIKKLQKHRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERFKSVEKLMKTKQFSKEALTNPDIIDPKELKK 110 (548)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHhHHHHHhHHHHHHHHHHHHHHHHhhHhhccCcccCChhHhcc
Confidence 345566788899999999886 5678888888888888888877765310 00000001111 1122
Q ss_pred cc----HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 033252 72 QD----LAEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNI 112 (123)
Q Consensus 72 q~----~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~ 112 (123)
+| ..+|+.+|.+.+|.|+++ .++.|+...-+-+-.|-||
T Consensus 111 ~d~i~~i~~~~~el~~q~e~~ea~--e~e~~~erh~~h~~~le~i 153 (548)
T COG5665 111 RDQVLFIHDCLDELQKQLEQYEAQ--ENEEQTERHEFHIANLENI 153 (548)
T ss_pred ccceehHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence 22 357888999999988876 6667776666666555444
No 169
>PRK00295 hypothetical protein; Provisional
Probab=27.09 E-value=1.8e+02 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
.++-+..|+.|+-|.+..|..|++.|..++-.|
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999888665
No 170
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=27.06 E-value=1.6e+02 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 72 QDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 72 q~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
--.+|-.+.|.+|++-++.||++++++=+.+.-++
T Consensus 360 ~~aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~ 394 (669)
T PF08549_consen 360 GKAEEFRKRVAKKIADMNAEIEKMKARHAKRMAKF 394 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999988776555
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.95 E-value=2.1e+02 Score=21.78 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033252 24 LQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 24 lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
+.+++..+....+.++..+.+...-+.+|
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l 121 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAEL 121 (194)
T ss_dssp ---------------------HHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHH
Confidence 33333333344444444444433333333
No 172
>PRK14011 prefoldin subunit alpha; Provisional
Probab=26.89 E-value=2.1e+02 Score=21.37 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhc--------cHHH-------------H
Q 033252 19 NDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQ--------DLAE-------------A 77 (123)
Q Consensus 19 ~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq--------~~~E-------------a 77 (123)
++++++.-.|+.+.++.+.|..+++-.+.+..++...-+.=.=.+-=..+||+- ++.+ +
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 456777778888888888888888888888877754221100000113344442 2222 3
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 033252 78 NANVRKRIEYISAELYVSSYLVNWRFFAIFLLF 110 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~ 110 (123)
..++++=++|++.+++-+++.+..=.-.|-.+-
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELN 115 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888887766666654433
No 173
>PHA02096 hypothetical protein
Probab=26.59 E-value=66 Score=22.64 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=32.6
Q ss_pred CCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHH
Q 033252 58 GANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYV 94 (123)
Q Consensus 58 d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~ 94 (123)
|..+|-..|+|+.--+-+||..++.+-++.|..-++.
T Consensus 19 ~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylkg 55 (103)
T PHA02096 19 SGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLKG 55 (103)
T ss_pred cCcccccccceEEeccHHHhhhHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999988877664
No 174
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=26.20 E-value=3.8e+02 Score=22.21 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=37.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
.+..+..++...----+.|-+.++-+.++.++||--+.+.+.-++.+..
T Consensus 114 kI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g 162 (254)
T KOG2196|consen 114 KISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSG 162 (254)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455566665555556788889999999999999999999888887443
No 175
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.02 E-value=5.6e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=25.2
Q ss_pred hhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 69 LVKQDLAEANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 69 LVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
-++.+..++..+=+.|+.-++++|+..+..+..+-
T Consensus 773 ~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~ 807 (1174)
T KOG0933|consen 773 TLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESS 807 (1174)
T ss_pred HHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777788888888888777766543
No 176
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=25.89 E-value=2.4e+02 Score=19.83 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIG 29 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq 29 (123)
..++..+.+++.++.+++
T Consensus 33 ~~~~~~l~~~~~~~~e~~ 50 (213)
T cd00176 33 ESVEALLKKHEALEAELA 50 (213)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355556666666665554
No 177
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.73 E-value=2.9e+02 Score=20.70 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC-CCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033252 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE-GANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~-d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
-......-.+..++...-.++.-|+--.+|+.+.-++=..++= =..||=.+..==+.--.++.+.++.+.++.++.+.+
T Consensus 26 srl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e 105 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELE 105 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677788888888888899999999998888444331 134665555444444566666666666666666666
Q ss_pred HHHhhhhH
Q 033252 94 VSSYLVNW 101 (123)
Q Consensus 94 ~l~kqi~~ 101 (123)
+.+.+|++
T Consensus 106 ~I~~~m~~ 113 (131)
T KOG1760|consen 106 SISARMDE 113 (131)
T ss_pred HHHHHHHH
Confidence 66555554
No 178
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=25.53 E-value=3.9e+02 Score=22.17 Aligned_cols=40 Identities=18% Similarity=0.034 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc
Q 033252 16 TKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL 55 (123)
Q Consensus 16 ~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l 55 (123)
.....+..++.-+..-...=.++...+++|.-.++.|..-
T Consensus 125 ~l~~~~~k~~~~L~~A~~SD~~l~~~~~~~~~~l~lL~~~ 164 (356)
T cd09237 125 SLREDLVKLKKSLVEASASDEKLFSLVDPVKEDIALLLNG 164 (356)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 4445556666677777777778888888898888888653
No 179
>PF04168 Alpha-E: A predicted alpha-helical domain with a conserved ER motif.; InterPro: IPR007296 This is a domain of unknown function. It sometimes occurs singly or as the C-terminal domain, in combination with another two domains of unknown function: (IPR007297 from INTERPRO) and (IPR007302 from INTERPRO).
Probab=25.18 E-value=3.7e+02 Score=21.71 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=50.1
Q ss_pred HHHHhHHHHHHHHhcCc---CCCCchhhhhccchhhc---cHHHHH-HHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033252 39 TIQLGENELVLKELGLL---NEGANVYKLIGPVLVKQ---DLAEAN-ANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 39 esql~E~~~VleEL~~l---~~d~kvYKlVG~VLVkq---~~~Ea~-~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
--++++....++.|..- ......-+++|.++-+- +.++.. ..+.+-++.+...+..+...|...||
T Consensus 239 ~f~l~~l~~~L~~L~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~L~~~l~~l~~~l~~ls~~i~~~YF 311 (311)
T PF04168_consen 239 AFQLNRLEEHLERLPGSHGSGRSSEAERLAGRLLARLRLADIEELAREGLHEFLDELQDQLNELSDAISRRYF 311 (311)
T ss_pred HHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35677777777777542 34567788888876655 566655 88899999999999999999998886
No 180
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=25.14 E-value=20 Score=25.74 Aligned_cols=10 Identities=50% Similarity=1.056 Sum_probs=8.0
Q ss_pred cccchhhhcc
Q 033252 113 SHLVSWKYEL 122 (123)
Q Consensus 113 ~~~~~~~~~~ 122 (123)
=+.|+|||++
T Consensus 29 it~V~WRy~l 38 (106)
T PF06366_consen 29 ITRVSWRYQL 38 (106)
T ss_pred EEEEEEEEEE
Confidence 3678999986
No 181
>PF13514 AAA_27: AAA domain
Probab=25.07 E-value=6.3e+02 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
..+....+..+++.++.++..+...+..-.
T Consensus 799 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 828 (1111)
T PF13514_consen 799 AQEERERLQEQLEELEEELEQAEEELEELE 828 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444433
No 182
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.05 E-value=3.9e+02 Score=21.99 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC
Q 033252 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG 58 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d 58 (123)
..+......+....+.+..-+..+...++.|..++...+.+..|++..+++
T Consensus 159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~ 209 (325)
T PF08317_consen 159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQE 209 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHH
Confidence 334444445555555666666666666777777777777777776665543
No 183
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.93 E-value=5.3e+02 Score=24.15 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~ei 92 (123)
.+.+....++.||++...=. .++..=..+.....++|.- ++...| --|-|-|+..+-.....--.++++.+..-+
T Consensus 161 kLeelr~~L~~L~~ek~~Rl---ekv~~~~~~I~~l~~~Lg~-~~~~~v-t~~~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRL---EKVLELKEEIKSLCSVLGL-DFSMTV-TDVEPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCC-Ccccch-hhhhhhhhhccCcccccCCHHHHHHHHHHH
Confidence 34444555555555444333 3333333444444444443 555444 556667777776444555555666666666
Q ss_pred HHHHhhhhHHHHH
Q 033252 93 YVSSYLVNWRFFA 105 (123)
Q Consensus 93 k~l~kqi~~~~~~ 105 (123)
+.|+.+-..++-+
T Consensus 236 ~~l~~~k~qr~~k 248 (660)
T KOG4302|consen 236 KKLKEEKKQRLQK 248 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 6665554444433
No 184
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=24.89 E-value=2.8e+02 Score=26.03 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 033252 25 QKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 25 Q~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
..+++++...+..+.-|+.|.+.-+.--. .|.+. +-|.- ++ .......++++-++..|+.++.|+.|.
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak---~~~~~--~~~~~----~~-k~~Ek~~k~~~~l~eqi~kl~~q~~dk 702 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAK---ADEKK--QEGSK----EK-KEVEKKEKKLERLEEQLKKLEIQMTDK 702 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccc--ccccc----cc-ccHHHHHHHHHHHHHHHHHHhhhccch
Confidence 34556666666666666666665443221 11110 00100 00 166778899999999999999999876
No 185
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=24.88 E-value=44 Score=25.02 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.4
Q ss_pred hccchhhccHHHHHHHHHHhHHHHH
Q 033252 65 IGPVLVKQDLAEANANVRKRIEYIS 89 (123)
Q Consensus 65 VG~VLVkq~~~Ea~~~l~kRlE~I~ 89 (123)
=|++|+.-|-.+.+..+++|++.|+
T Consensus 134 Cg~~L~~~dn~~~i~~l~~~i~~l~ 158 (158)
T TIGR00373 134 CGAMLDYLDNSEAIEKLEEQIKFLK 158 (158)
T ss_pred CCCEeeeccCHHHHHHHHHHHHhhC
Confidence 5899999999999999999998773
No 186
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.84 E-value=3.2e+02 Score=20.87 Aligned_cols=75 Identities=19% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHH
Q 033252 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISA 90 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~ 90 (123)
...+..+-..+..+....+.+...+..+.+.+.|...+...|...+++ .+.+...+..-.+.+..
T Consensus 20 ~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~---------------L~~~L~~~~~~~~~~~~ 84 (200)
T cd07624 20 NEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE---------------LAPLLEGVSSAVERCTA 84 (200)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---------------HHHHHHHHHHHHHHHHH
Confidence 334444455555566666666677777778888888888887776642 34455555544444444
Q ss_pred HHHHHHhhhh
Q 033252 91 ELYVSSYLVN 100 (123)
Q Consensus 91 eik~l~kqi~ 100 (123)
.+..+.....
T Consensus 85 ~~~~l~~~~~ 94 (200)
T cd07624 85 ALEVLLSDHE 94 (200)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 187
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.33 E-value=1.7e+02 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=26.3
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033252 71 KQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
..+..+|...|++|-+.|+..|++|+-++.-
T Consensus 14 ~psL~dai~~v~~r~dSve~KIskLDaeL~k 44 (218)
T KOG1655|consen 14 PPSLQDAIDSVNKRSDSVEKKISKLDAELCK 44 (218)
T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887754
No 188
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.28 E-value=4.1e+02 Score=22.00 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033252 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
+........+++.+.++-..+......|+.+..+...-+.+++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777777777777777777766666555555544
No 189
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=24.16 E-value=3.6e+02 Score=25.18 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC
Q 033252 13 ELETKANDLSKLQ----KDIGKNHQVRKKYTIQLGENELVLKELGLLNEG 58 (123)
Q Consensus 13 ~~q~~~~~~q~lQ----~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d 58 (123)
....+.+.+++++ ..+.+...+++.|+.+++....+++|++..=..
T Consensus 293 ~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 293 EIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666554 455667788999999999999999998764333
No 190
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.01 E-value=4.7e+02 Score=22.51 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033252 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-++..++..+...|.++.|++...+..+..-.++ . .....+-...+++++..++..++.++.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~-~----------~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKD-K----------IEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-h----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555443211111 0 011222334566677777777777777
Q ss_pred hhhHHHHHHHHhhcccc
Q 033252 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
.++.... .|-||-|
T Consensus 98 ~~~~~~~---~lPN~~~ 111 (418)
T TIGR00414 98 ELQDKLL---SIPNIPH 111 (418)
T ss_pred HHHHHHH---hCCCCCC
Confidence 7666443 3445544
No 191
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=23.85 E-value=1.2e+02 Score=25.38 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhhcc
Q 033252 75 AEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHLVSWKYEL 122 (123)
Q Consensus 75 ~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
.++...+.++++.|..+++.++..|...|- +.-+|+|.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~Y~L 283 (343)
T cd02666 245 REAIQSESSLVRQAQNELAELKHEIEKQFD---------DLKSYGYRL 283 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccCCCceEE
Confidence 356677777888888888888888877763 456677665
No 192
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.82 E-value=74 Score=28.57 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhH
Q 033252 27 DIGKNHQVRKKYTIQLGE 44 (123)
Q Consensus 27 ~lq~l~~qr~qLesql~E 44 (123)
++++|..+.++|+.|+.+
T Consensus 32 kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDD 49 (489)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 455555555555555443
No 193
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.75 E-value=3.9e+02 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENE 46 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~ 46 (123)
|..+++..+.+|...+.++..+..+..+...-.+|-.
T Consensus 264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3445566666666666666665555555444443333
No 194
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=23.53 E-value=3.9e+02 Score=23.78 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHH
Q 033252 23 KLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVR 82 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~ 82 (123)
..+.++.........|..|+.++..+++-|+.+..=...++-+-..+-..+.-+|...|+
T Consensus 73 ~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~ 132 (593)
T PF06248_consen 73 EIQPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLE 132 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345556666666677777777777777766666433333443334444444444444433
No 195
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.45 E-value=7.3e+02 Score=24.55 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCc
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLL 55 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l 55 (123)
+..++...-.+.+.++++...+....+.++++...|+..+.++..+
T Consensus 324 le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~ 369 (1311)
T TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSL 369 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666676777766666666665544
No 196
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=23.23 E-value=1.9e+02 Score=18.98 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHhcCcCCCCchhh
Q 033252 34 VRKKYTIQLGENELVLKELGLLNEGANVYK 63 (123)
Q Consensus 34 qr~qLesql~E~~~VleEL~~l~~d~kvYK 63 (123)
+...++.++....-=+++++.-+|+.+.|-
T Consensus 6 ~l~~l~~~l~~l~~~~~~~~~~d~~~~~Y~ 35 (70)
T PF10975_consen 6 RLAELEQQLKQLEDQQEELEQRDPDSPLYS 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcchHH
Confidence 344444444444445555677788888884
No 197
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.12 E-value=2.4e+02 Score=18.90 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033252 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQ 41 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesq 41 (123)
++.+..+-++++.++.++..+..++.-+..+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444
No 198
>PRK10963 hypothetical protein; Provisional
Probab=22.98 E-value=3.3e+02 Score=21.24 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHH
Q 033252 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVR 82 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~ 82 (123)
+.+.|+++...+..+..+|-..-.+|+... .++.+++-..|--++.+++...|.
T Consensus 45 Q~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~---------~~~~~l~l~Ll~a~~~~~l~~~L~ 98 (223)
T PRK10963 45 QMARQRNHIHVLEEEMTLLMEQAIANEDLF---------YRLLPLQSRLAAADSLQDMLMRLH 98 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456778888888888888888888888877 456667777777778888777774
No 199
>PRK10722 hypothetical protein; Provisional
Probab=22.96 E-value=3.2e+02 Score=22.56 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC
Q 033252 12 RELETKANDLSKL----QKDIGKNHQVRKKYTIQLGENELVLKELGLLN 56 (123)
Q Consensus 12 ~~~q~~~~~~q~l----Q~~lq~l~~qr~qLesql~E~~~VleEL~~l~ 56 (123)
-.+.++-..|+.| ..++..+.++...|..+++....=||-|..++
T Consensus 158 l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIE 206 (247)
T PRK10722 158 LALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIE 206 (247)
T ss_pred HhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999 77899999999999999998888888776654
No 200
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.61 E-value=3.4e+02 Score=24.83 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCC
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEG 58 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d 58 (123)
.++.....|+++.++++.+..+.+....++.-.+-.++||+.+++.
T Consensus 158 ~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~ 203 (557)
T COG0497 158 AYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQ 203 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3677777788888888888887777777777777777788777654
No 201
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.61 E-value=2.5e+02 Score=18.82 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 033252 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGE 44 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E 44 (123)
++.+.+.+-++|..+|..+-.++-.+|+.+=+
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777776654
No 202
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.19 E-value=3.2e+02 Score=20.37 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhcc-HHHHHHHHHHhHHHHHHHHHHHHhh
Q 033252 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD-LAEANANVRKRIEYISAELYVSSYL 98 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~-~~Ea~~~l~kRlE~I~~eik~l~kq 98 (123)
.+++++..+..+..+......++++....-..+. .........-..+|.+++ ..+....|..++.|-+ +++.+.+.
T Consensus 8 ~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs--~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~-~Ld~itr~ 84 (157)
T PF04136_consen 8 YLQQYREECDQLLDQTDEILDQLDELQEQYNSVS--EKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE-ELDPITRR 84 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-hHHHHHHH
Confidence 3334444444444444444444444333333333 233455556667777775 5667778888877654 34444444
Q ss_pred hh
Q 033252 99 VN 100 (123)
Q Consensus 99 i~ 100 (123)
++
T Consensus 85 Ln 86 (157)
T PF04136_consen 85 LN 86 (157)
T ss_pred Hc
Confidence 43
No 203
>PF15324 TALPID3: Hedgehog signalling target
Probab=22.07 E-value=2.5e+02 Score=28.10 Aligned_cols=58 Identities=29% Similarity=0.393 Sum_probs=41.8
Q ss_pred HHHHHHhHHHHHHHH----hcCcCCCCchhhhhccchhhccHHH---HHHHHHHhHHHHHHHHHH
Q 033252 37 KYTIQLGENELVLKE----LGLLNEGANVYKLIGPVLVKQDLAE---ANANVRKRIEYISAELYV 94 (123)
Q Consensus 37 qLesql~E~~~VleE----L~~l~~d~kvYKlVG~VLVkq~~~E---a~~~l~kRlE~I~~eik~ 94 (123)
++.-..+-|++|||| +-...|++.+|-+|...=-.++..| ++++|++++..|+.||..
T Consensus 380 kILRgVQNNKKVLEENLEAIiRAKDGaAMYSfInaLstNRd~~EkIRIRKTVDeWIK~ISaEIQd 444 (1252)
T PF15324_consen 380 KILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNRDMSEKIRIRKTVDEWIKTISAEIQD 444 (1252)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhcchhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344455566777665 4455789999999988777776555 567888888888888753
No 204
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.01 E-value=5.1e+02 Score=22.25 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=5.6
Q ss_pred HHHHHHhHHHHHHHH
Q 033252 78 NANVRKRIEYISAEL 92 (123)
Q Consensus 78 ~~~l~kRlE~I~~ei 92 (123)
...+..+++.+..++
T Consensus 381 l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 381 LAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 205
>PRK04406 hypothetical protein; Provisional
Probab=21.94 E-value=2.5e+02 Score=18.63 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
.++-+..|+.|+-|.+.-|..|++.|..++-.|
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999988766
No 206
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.77 E-value=5.4e+02 Score=22.43 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 033252 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENE 46 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~ 46 (123)
.++.+.++-.++.+++.++..+..++.-+++++.=.+
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777777777664333
No 207
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=21.68 E-value=4e+02 Score=20.89 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=54.8
Q ss_pred HHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHH
Q 033252 8 RELQRELETKAND------LSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANV 81 (123)
Q Consensus 8 ~~l~~~~q~~~~~------~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l 81 (123)
..+|+.+-+...+ .+.+...++.+..-.....+.+.|....|++-.. .|..+-.-.|.-.-..+..++-..+
T Consensus 5 ~~lP~~l~~~~~~v~~~~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~--ed~~~r~~~g~~W~r~~S~~~~~~l 82 (296)
T PF13949_consen 5 EGLPPSLLEKSEEVRSEGGIEKLEESLQELPELSQEVRSILDEIEEMLDEEER--EDEQLRAKYGERWTRPPSSELNASL 82 (296)
T ss_dssp -S--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHSTTTCGSS-HHHHCHHH
T ss_pred CCCChHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCcCCCcHhhHHHH
Confidence 4566666555555 4467777777777888888888888888877764 3445555568766666666666677
Q ss_pred HHhHHHHHHHHHH
Q 033252 82 RKRIEYISAELYV 94 (123)
Q Consensus 82 ~kRlE~I~~eik~ 94 (123)
..+++.+..-+..
T Consensus 83 ~~~l~~~~~~L~~ 95 (296)
T PF13949_consen 83 RKELQKYREYLEQ 95 (296)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665554
No 208
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.66 E-value=2.5e+02 Score=18.42 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 74 LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 74 ~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
.++-+..|+.|+-|.+.-|..|++.+..++-.|
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I 38 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEM 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678889999999999999999999988666
No 209
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=21.40 E-value=3.7e+02 Score=20.34 Aligned_cols=92 Identities=16% Similarity=-0.013 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhh-hhccchhhc--cHHHHHHHHHHhHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYK-LIGPVLVKQ--DLAEANANVRKRIEYI 88 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYK-lVG~VLVkq--~~~Ea~~~l~kRlE~I 88 (123)
+.++++....+.+++....+.....-|-.|+.-...|.- ...+ -.+|- +-+-+..|+ ..+.+...+.++++.+
T Consensus 8 ~~~~~~~~~W~~~~~~~~~~l~sl~nL~eqL~al~~~~~--~~~p--L~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l 83 (168)
T PF15011_consen 8 RKVEEQMEKWDSALSRCLPLLSSLANLAEQLQALQNVKN--YGTP--LRSFPDLQERLRRKQLEALETVLAKLRETLEEL 83 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999988777752 2211 11222 222222333 4688899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 033252 89 SAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 89 ~~eik~l~kqi~~~~~~~~ 107 (123)
...-.+++++..+-|-..-
T Consensus 84 ~~v~~~l~~~~~~~~~l~~ 102 (168)
T PF15011_consen 84 QKVRDSLSRQVRDVFQLYE 102 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876654
No 210
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=21.18 E-value=4.3e+02 Score=21.01 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 033252 75 AEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNI 112 (123)
Q Consensus 75 ~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~ 112 (123)
+.-.......+..++.++..+...|..+.--.-.|+|+
T Consensus 254 ~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~ 291 (312)
T PF00038_consen 254 DEEREEYQAEIAELEEELAELREEMARQLREYQELLDV 291 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666655554555543
No 211
>PF13864 Enkurin: Calmodulin-binding
Probab=21.07 E-value=2.8e+02 Score=18.83 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 14 LETKANDLSKLQKDIGK---------NHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~---------l~~qr~qLesql~E~~~VleEL~~ 54 (123)
++.+-..++.+..+++. ....+..||.+|.+.+..++-|+.
T Consensus 46 L~~Lk~~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 46 LEGLKKNWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444455555555554 456788999999999999988875
No 212
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.03 E-value=4.3e+02 Score=20.94 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhc-cHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033252 26 KDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQ-DLAEANANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 26 ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq-~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
.+.+.+..+...+.....+-..|++++++ .|+.++|.-=-.. ....-+..+.+-.+.+...+.++.+.++|-|-
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek-----~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ 97 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEK-----TIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHK 97 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Confidence 45666667777777777788888888875 6888887732211 12233445667778888888888888887665
Q ss_pred H
Q 033252 105 A 105 (123)
Q Consensus 105 ~ 105 (123)
.
T Consensus 98 r 98 (207)
T PF05010_consen 98 R 98 (207)
T ss_pred H
Confidence 4
No 213
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.03 E-value=1.8e+02 Score=23.57 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=33.7
Q ss_pred CchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033252 59 ANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 59 ~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+.+.+..|+..|+.++ .+.|.++++.|..+-.+....+=+.+..+
T Consensus 67 ~~G~rFlgG~aVP~~~---~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~ 111 (257)
T PF11348_consen 67 KVGVRFLGGYAVPEDK---AEELAEELEDIKTEFEQEKQDFLANYDQA 111 (257)
T ss_pred HcCCcccceeEcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999765 45677788888888887777766555555
No 214
>PLN02320 seryl-tRNA synthetase
Probab=20.99 E-value=6.2e+02 Score=22.81 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhccccc
Q 033252 78 NANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISHL 115 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~~~~ 115 (123)
...|++++..++.+++.+...+..-. ..+-||-|.
T Consensus 139 ~k~lk~~i~~le~~~~~~~~~l~~~~---l~iPN~~h~ 173 (502)
T PLN02320 139 GKNLKEGLVTLEEDLVKLTDELQLEA---QSIPNMTHP 173 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCCc
Confidence 34666777777777777777766643 345555553
No 215
>PRK13676 hypothetical protein; Provisional
Probab=20.95 E-value=2.9e+02 Score=19.04 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033252 12 RELETKANDLSKLQKDIGKNH 32 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~ 32 (123)
|..+..+.+|+..|.+++...
T Consensus 36 ~~a~~li~~F~~~q~~~~~~q 56 (114)
T PRK13676 36 EEAKKLFDEFRALQLEIQQKQ 56 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888899998888886654
No 216
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=20.69 E-value=5.3e+02 Score=21.94 Aligned_cols=30 Identities=23% Similarity=0.076 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033252 24 LQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 24 lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
|+.+-+.+.....++..|+.+.-...++++
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444
No 217
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.66 E-value=2.9e+02 Score=18.86 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 033252 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENE 46 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~ 46 (123)
++..-..+...+..+..+..+...|+.++.|-+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666666666666666544
No 218
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.33 E-value=3.9e+02 Score=20.24 Aligned_cols=20 Identities=5% Similarity=-0.064 Sum_probs=10.1
Q ss_pred HhHHHHHHHHHHHHhhhhHH
Q 033252 83 KRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 83 kRlE~I~~eik~l~kqi~~~ 102 (123)
..++-++.+|+++...|...
T Consensus 163 g~I~~L~~~I~~~~~~I~~~ 182 (184)
T PF05791_consen 163 GDIPQLQKQIENLNEEIKKD 182 (184)
T ss_dssp --HHHHHHHHHHHTGGG-GG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 34555666666666666543
No 219
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=20.33 E-value=4.3e+02 Score=20.77 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHhcCcC
Q 033252 9 ELQRELETKANDLSKLQK----DIGKNHQVRKKYTIQLGENELVLKELGLLN 56 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~----~lq~l~~qr~qLesql~E~~~VleEL~~l~ 56 (123)
.++-.+.++-..|+.||+ ++..+-++...|..||+....=||-|.+++
T Consensus 109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIE 160 (179)
T PF13942_consen 109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIE 160 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344456677778888886 688889999999999998888877766543
No 220
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.05 E-value=3.3e+02 Score=19.28 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=37.3
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033252 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
....+..++.....++..|+.++..+...=..|..+-......+.+++.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677788888888888888888888888887776666666666654
Done!