BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033253
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 67
++DYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRLDYDFTG 76
KR YD G
Sbjct: 61 KRAAYDQYG 69
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 67
++DYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRLDYDFTG 76
KR YD G
Sbjct: 61 KRAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPD 67
++DYY+IL V A + +IR Y++LA+K+HPD++ GD AKF+EI EAY VL+D
Sbjct: 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 68 KRLDYDFTG 76
KR YD G
Sbjct: 61 KRAAYDQYG 69
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 4 NDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL 63
+ + DYY+IL V A+DE ++ YR+LALK+HPDK++ A A F+ I AYAVL
Sbjct: 1 GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA-FKAIGTAYAVL 59
Query: 64 SDPDKRLDYD 73
S+P+KR YD
Sbjct: 60 SNPEKRKQYD 69
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
KDYY+ L + A+DE+I+ YR+ AL++HPDK N + KF+EI EAY VLSDP KR
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK-NKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 70 LDYDFTG 76
+D G
Sbjct: 62 EIFDRYG 68
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKH-NGDSAVTAKFQEINEAYAVLSDPDKR 69
DYY++L+V A+ E I+ YRKLALKWHPDK+ +F+++ EAY VLSD KR
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 70 LDYDFTG 76
YD G
Sbjct: 70 DIYDRYG 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 13 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 72
Y +L V A +++++ YRK ALK+HPDK GD T KF+EI+EA+ +L+DP KR Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIY 67
Query: 73 DFTGI 77
D G+
Sbjct: 68 DQYGL 72
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 13 YKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 72
Y +L +D +AT + I+ +YRKLALK+HPDK+ + KF+EIN A+A+L+D KR Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 73 DFTG 76
D G
Sbjct: 80 DKYG 83
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDPDK 68
+YY++L V A+ E I+ YRKLAL+WHPDK N D+ A KF+ ++EAY VLSD K
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 69 RLDYDFTGI 77
R YD G
Sbjct: 69 RSLYDRAGC 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71
YY IL V A++ +I+ + KLA+K+HPDK N AKF+EI EAY LSD ++R +
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDK-NKSPDAEAKFREIAEAYETLSDANRRKE 67
Query: 72 YDFTG 76
YD G
Sbjct: 68 YDTLG 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71
YY +L V +AT E+++ YRKLALK+HPDK+ + KF++I++AY VLSD KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG---EKFKQISQAYEVLSDAKKREL 64
Query: 72 YDFTG 76
YD G
Sbjct: 65 YDKGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71
YY +L V DA+D +++ YRK+ALK+HPDK N D A +F++I++AY VLSD KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDK-NPDGA--EQFKQISQAYEVLSDEKKRQI 66
Query: 72 YDFTG 76
YD G
Sbjct: 67 YDQGG 71
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 4 NDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL 63
+ + DYY+IL V +A+ ++I+ Y +LA K+HPD + D KF ++ EAY VL
Sbjct: 1 GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVL 60
Query: 64 SDPDKRLDYDFTG 76
SD KR YD G
Sbjct: 61 SDEVKRKQYDAYG 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA--KFQEINEAYAVLSDPDKR 69
YY+IL+V A+ + I+ YR+ AL+WHPDK N D+ A KF+E+ EAY VLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDK-NPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 70 LDYDFTG 76
YD G
Sbjct: 63 EIYDRYG 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRL 70
D Y++L V A+ I+ Y+KLA +WHPDK N D +F +I++AY +LS+ +KR
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDK-NKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 71 DYDFTG 76
+YD G
Sbjct: 77 NYDHYG 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
+++Y +L V A+ +IR ++KLALK HPDK+ + F +IN AY VL D D R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 70 LDYDFTG 76
YD G
Sbjct: 81 KKYDKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
+++Y +L V A+ +IR ++KLALK HPDK+ + F +IN AY VL D D R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 70 LDYDFTG 76
YD G
Sbjct: 62 KKYDKYG 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYAV 62
+ ++DYYKIL V +A ++I YRKLAL+WHPD KF +I A V
Sbjct: 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437
Query: 63 LSDPDKRLDYD 73
LSDP+ R +D
Sbjct: 438 LSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYAV 62
+ ++DYYKIL V +A ++I YRKLAL+WHPD KF +I A V
Sbjct: 378 QSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437
Query: 63 LSDPDKRLDYD 73
LSDP+ R +D
Sbjct: 438 LSDPEMRKKFD 448
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
KDYY I+ V + I+ YR+LA K+HPD A A+F+E+ EA+ VLSD +R
Sbjct: 5 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDA-EARFKEVAEAWEVLSDEQRR 63
Query: 70 LDYD 73
+YD
Sbjct: 64 AEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
KDYY IL V + I+ YR+LA K+HPD + A AKF+++ EA+ VL D +R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDA-EAKFKDLAEAWEVLKDEQRR 86
Query: 70 LDYD 73
+YD
Sbjct: 87 AEYD 90
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 2 EGNDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA 61
+G+ + ++ Y +L V AT +I+ Y + +HPD+++G + +F I++AY
Sbjct: 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYV 68
Query: 62 VLSDPDKRLDYD 73
VL R YD
Sbjct: 69 VLGSATLRRKYD 80
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 1 MEGNDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA------VTAKFQ 54
M + +KD+Y IL D A ++ Y+KL L +HPDK + D KF
Sbjct: 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI 60
Query: 55 EINEAYAVLSDPDKRLDYDF 74
EI++A+ +L + + + +YD
Sbjct: 61 EIDQAWKILGNEETKREYDL 80
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 5 DNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTA------KFQEINE 58
+ +KD+Y IL D A ++ Y+KL L +HPDK + D KF EI++
Sbjct: 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70
Query: 59 AYAVLSDPDKRLDYDF 74
A+ +L + + + YD
Sbjct: 71 AWKILGNEETKKKYDL 86
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
+DYY +L D ++ E+I ++ AL+ HPDKH + FQ++ +A +L++ + R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 70 LDYD 73
YD
Sbjct: 80 ARYD 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 13 YKILEVDYDATD-EKIRLNYRKLALKWHPDK-HNGDSAVTA--KFQEINEAYAVLSDPDK 68
Y +LEV+ + D +K+ YR LA K HPD+ N + + A +F+ I AY L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 69 RLDYDF 74
+ +YD+
Sbjct: 78 KTNYDY 83
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 26 KIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81
++R YR+L + HPD S ++ +N+AY L DP +R Y + ID
Sbjct: 34 RLRKEYRQLQAQHHPDMAQQGSEQSST---LNQAYHTLKDPLRRSQYMLKLLRNID 86
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 26 KIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81
++R YR+L + HPD S ++ +N+AY L DP +R Y + ID
Sbjct: 26 RLRKEYRQLQAQHHPDMAQQGSEQSST---LNQAYHTLKDPLRRSQYMLKLLRNID 78
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 11 DYYKI--LEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVL 63
+Y+++ L + ++ + +R L ++HPD S + +IN+AY L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTL 64
Query: 64 SDPDKRLDY 72
DP +R +Y
Sbjct: 65 KDPLRRAEY 73
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 65
KD + +L V A+ +++ YRKLA+ HPDK + A +N A+L +
Sbjct: 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 11 DYYKI--LEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVL 63
DY+ + L Y + + L ++ L ++HPDK S A + IN+A+ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 64 SDPDKRLDY 72
P R +Y
Sbjct: 62 RHPLMRAEY 70
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 22 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 61
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 61 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 103
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 22 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 61
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 48 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWS 90
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 23 TDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 61
T E+++ YRK L HPDK G + F E+N+A++
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS 171
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 77 IYEIDKYTLREYLARFKGMILTCNGLGISHTS 108
+Y D + L+ LAR G I+ C GISHT+
Sbjct: 256 VYLRDSFGLKTLLAR--GAIVRCPMAGISHTA 285
>pdb|2RCQ|A Chain A, Crystal Strucure Of Human Apo Cellular Retinol Binding
Protein Ii (Crbp-Ii)
pdb|2RCT|A Chain A, Crystal Structure Of Human Holo Cellular Retinol-Binding
Protein Ii (Crbp-Ii)
Length = 141
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 25/120 (20%)
Query: 1 MEGNDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAY 60
ME N+N + Y K L++D+ +RL K+ D N + T+ F
Sbjct: 14 MESNENF--EGYMKALDIDFATRKIAVRLTQTKVI---DQDGDNFKTKTTSTF------- 61
Query: 61 AVLSDPDKRLDYDFTGIYEIDKYTLR------EYLARFKGMILTCNGLGISHTSMWSQQL 114
+ D DFT E D+YT + L ++G +L C G W Q +
Sbjct: 62 -------RNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWI 114
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69
K+ ++E + + + + R+L LKWHPDK+ + + NE + L + R
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIA------NEVFKHLQNEINR 69
Query: 70 LD 71
L+
Sbjct: 70 LE 71
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 22 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 61
T E+++ YRK L HP K G + F E+N+A++
Sbjct: 46 VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 88
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 22 ATDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYA 61
T E+++ YRK L HP K G + F E+N+A++
Sbjct: 45 VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,248,811
Number of Sequences: 62578
Number of extensions: 171902
Number of successful extensions: 455
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 51
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)