Query 033253
Match_columns 123
No_of_seqs 149 out of 1351
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 11:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.8E-29 8.3E-34 194.9 7.1 74 8-81 2-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 3.2E-27 6.9E-32 180.9 6.6 77 7-83 13-89 (336)
3 PRK14288 chaperone protein Dna 99.9 3.5E-24 7.5E-29 168.5 7.2 72 9-80 2-73 (369)
4 KOG0712 Molecular chaperone (D 99.9 2.5E-23 5.5E-28 160.6 7.3 71 8-81 2-72 (337)
5 PRK14296 chaperone protein Dna 99.9 2.6E-23 5.7E-28 163.7 7.3 71 9-80 3-73 (372)
6 PRK14286 chaperone protein Dna 99.9 3.3E-23 7.3E-28 163.1 7.4 72 9-80 3-74 (372)
7 PRK14279 chaperone protein Dna 99.9 4.2E-23 9.1E-28 163.5 7.3 69 9-77 8-76 (392)
8 PRK14287 chaperone protein Dna 99.9 2.4E-22 5.2E-27 158.2 8.8 71 9-80 3-73 (371)
9 PRK14282 chaperone protein Dna 99.9 2.8E-22 6E-27 157.7 7.9 72 9-80 3-75 (369)
10 PRK14285 chaperone protein Dna 99.9 2.5E-22 5.5E-27 157.8 7.5 71 10-80 3-73 (365)
11 PRK14294 chaperone protein Dna 99.9 2.7E-22 5.8E-27 157.7 7.6 72 9-80 3-74 (366)
12 PTZ00037 DnaJ_C chaperone prot 99.9 3.2E-22 6.8E-27 159.6 7.8 69 8-80 26-94 (421)
13 PRK14297 chaperone protein Dna 99.9 4.1E-22 8.8E-27 157.3 7.6 72 9-80 3-74 (380)
14 PRK14301 chaperone protein Dna 99.9 4.1E-22 8.9E-27 157.0 7.5 72 9-80 3-74 (373)
15 PRK14277 chaperone protein Dna 99.9 4.3E-22 9.3E-27 157.4 7.5 72 9-80 4-75 (386)
16 PRK14283 chaperone protein Dna 99.9 6.1E-22 1.3E-26 156.2 7.4 72 9-81 4-75 (378)
17 PRK14276 chaperone protein Dna 99.9 5.8E-22 1.3E-26 156.4 7.2 71 9-80 3-73 (380)
18 KOG0716 Molecular chaperone (D 99.9 4.1E-22 8.9E-27 148.9 5.5 73 8-80 29-101 (279)
19 PRK14295 chaperone protein Dna 99.9 9.9E-22 2.1E-26 155.6 7.9 72 9-80 8-83 (389)
20 PRK14284 chaperone protein Dna 99.9 1.1E-21 2.3E-26 155.4 7.4 71 10-80 1-71 (391)
21 PRK14281 chaperone protein Dna 99.9 1.1E-21 2.3E-26 155.7 7.3 71 10-80 3-73 (397)
22 PRK10767 chaperone protein Dna 99.9 1.4E-21 3E-26 153.9 7.8 72 9-80 3-74 (371)
23 PRK14298 chaperone protein Dna 99.9 1.1E-21 2.4E-26 154.7 7.1 71 9-80 4-74 (377)
24 PRK14299 chaperone protein Dna 99.9 1.4E-21 3.1E-26 149.4 7.5 69 9-78 3-71 (291)
25 KOG0691 Molecular chaperone (D 99.8 1.8E-21 3.9E-26 148.6 7.6 82 9-90 4-85 (296)
26 PF00226 DnaJ: DnaJ domain; I 99.8 1.2E-21 2.7E-26 118.3 5.4 63 11-73 1-64 (64)
27 PRK14291 chaperone protein Dna 99.8 1.4E-21 3E-26 154.4 7.1 71 9-80 2-72 (382)
28 PRK14280 chaperone protein Dna 99.8 1.5E-21 3.4E-26 153.8 7.2 71 9-80 3-73 (376)
29 PRK14278 chaperone protein Dna 99.8 1.8E-21 4E-26 153.5 7.4 68 10-78 3-70 (378)
30 PRK14290 chaperone protein Dna 99.8 4.6E-21 9.9E-26 150.7 9.0 71 10-80 3-74 (365)
31 PRK14289 chaperone protein Dna 99.8 6.4E-21 1.4E-25 150.7 7.4 72 9-80 4-75 (386)
32 KOG0717 Molecular chaperone (D 99.8 5E-21 1.1E-25 151.5 6.3 88 6-93 4-98 (508)
33 PTZ00341 Ring-infected erythro 99.8 1.2E-20 2.5E-25 160.0 7.5 77 8-85 571-647 (1136)
34 TIGR02349 DnaJ_bact chaperone 99.8 1.3E-20 2.8E-25 147.4 7.0 69 11-80 1-69 (354)
35 KOG0715 Molecular chaperone (D 99.8 1.8E-20 3.9E-25 143.3 7.2 71 8-79 41-111 (288)
36 PRK14292 chaperone protein Dna 99.8 3.3E-20 7.1E-25 146.1 8.6 69 10-79 2-70 (371)
37 KOG0718 Molecular chaperone (D 99.8 1.3E-20 2.7E-25 149.5 6.1 76 6-81 5-83 (546)
38 PRK14300 chaperone protein Dna 99.8 1.7E-20 3.7E-25 147.7 6.6 70 10-80 3-72 (372)
39 PRK14293 chaperone protein Dna 99.8 4.7E-20 1E-24 145.3 7.0 70 10-80 3-72 (374)
40 PRK10266 curved DNA-binding pr 99.8 8.2E-20 1.8E-24 140.6 6.4 66 10-76 4-69 (306)
41 KOG0719 Molecular chaperone (D 99.8 1.3E-19 2.8E-24 133.2 7.1 72 8-79 12-85 (264)
42 smart00271 DnaJ DnaJ molecular 99.8 2.4E-19 5.1E-24 106.8 6.8 58 10-67 1-59 (60)
43 TIGR03835 termin_org_DnaJ term 99.8 2.1E-19 4.6E-24 149.6 7.9 71 10-81 2-72 (871)
44 cd06257 DnaJ DnaJ domain or J- 99.8 7.9E-19 1.7E-23 102.7 6.7 55 11-65 1-55 (55)
45 PHA03102 Small T antigen; Revi 99.7 2.4E-18 5.2E-23 120.5 6.4 69 10-82 5-75 (153)
46 KOG0721 Molecular chaperone (D 99.7 4.8E-18 1E-22 123.7 7.0 73 6-78 95-167 (230)
47 KOG0624 dsRNA-activated protei 99.7 5.6E-18 1.2E-22 131.5 7.6 68 7-74 391-461 (504)
48 COG2214 CbpA DnaJ-class molecu 99.7 8.1E-18 1.8E-22 120.7 6.7 68 8-75 4-72 (237)
49 PRK05014 hscB co-chaperone Hsc 99.7 8.4E-17 1.8E-21 114.8 7.2 66 10-75 1-73 (171)
50 PRK00294 hscB co-chaperone Hsc 99.7 2.4E-16 5.3E-21 112.6 7.6 69 7-75 1-76 (173)
51 PRK01356 hscB co-chaperone Hsc 99.7 2.4E-16 5.3E-21 112.0 6.7 67 10-76 2-73 (166)
52 PRK03578 hscB co-chaperone Hsc 99.7 3.6E-16 7.8E-21 112.1 7.4 67 8-74 4-77 (176)
53 KOG0720 Molecular chaperone (D 99.6 2.3E-16 4.9E-21 125.2 5.4 68 8-76 233-300 (490)
54 KOG0722 Molecular chaperone (D 99.6 4E-16 8.7E-21 116.4 3.2 67 8-75 31-97 (329)
55 KOG0550 Molecular chaperone (D 99.6 4.5E-15 9.8E-20 117.0 5.6 70 5-74 368-438 (486)
56 KOG0714 Molecular chaperone (D 99.5 1.1E-14 2.5E-19 108.8 4.9 73 9-81 2-75 (306)
57 PTZ00100 DnaJ chaperone protei 99.5 2.1E-14 4.5E-19 96.2 5.2 53 8-64 63-115 (116)
58 PHA02624 large T antigen; Prov 99.5 3.3E-14 7E-19 117.3 7.0 82 9-94 10-98 (647)
59 PRK09430 djlA Dna-J like membr 99.5 5.8E-14 1.3E-18 106.5 6.1 59 7-65 197-262 (267)
60 PRK01773 hscB co-chaperone Hsc 99.4 3.3E-13 7.1E-18 96.5 7.2 65 10-74 2-73 (173)
61 COG5407 SEC63 Preprotein trans 99.3 1.6E-12 3.4E-17 103.7 4.3 70 8-77 96-170 (610)
62 COG5269 ZUO1 Ribosome-associat 99.3 5.7E-12 1.2E-16 95.2 6.0 92 6-97 39-139 (379)
63 KOG1150 Predicted molecular ch 99.3 4.5E-12 9.8E-17 91.8 5.2 65 9-73 52-117 (250)
64 TIGR00714 hscB Fe-S protein as 99.3 1.4E-11 2.9E-16 86.9 6.6 56 21-76 2-62 (157)
65 KOG0568 Molecular chaperone (D 99.1 9.8E-11 2.1E-15 86.9 4.9 107 7-116 44-155 (342)
66 KOG0723 Molecular chaperone (D 98.6 1.1E-07 2.4E-12 62.5 5.0 56 7-66 53-108 (112)
67 KOG1789 Endocytosis protein RM 98.6 9.3E-08 2E-12 83.2 5.4 54 9-65 1280-1337(2235)
68 KOG3192 Mitochondrial J-type c 97.9 1.4E-05 3E-10 56.1 3.8 68 7-74 5-79 (168)
69 KOG0431 Auxilin-like protein a 97.7 4.6E-05 9.9E-10 62.0 4.3 47 16-62 394-447 (453)
70 COG1076 DjlA DnaJ-domain-conta 97.3 7.7E-05 1.7E-09 53.3 0.8 54 10-63 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.2 0.00031 6.7E-09 50.2 2.6 71 11-81 2-79 (174)
72 PF03656 Pam16: Pam16; InterP 96.4 0.0069 1.5E-07 41.4 4.3 51 11-65 59-109 (127)
73 PF14687 DUF4460: Domain of un 92.5 0.42 9.2E-06 31.9 5.2 48 20-67 4-55 (112)
74 KOG0724 Zuotin and related mol 92.3 0.17 3.7E-06 39.4 3.5 55 21-75 3-61 (335)
75 PF13446 RPT: A repeated domai 90.5 0.66 1.4E-05 27.2 4.1 27 10-36 5-31 (62)
76 PF11833 DUF3353: Protein of u 88.7 1.1 2.5E-05 32.6 5.0 38 19-64 1-38 (194)
77 COG5552 Uncharacterized conser 80.0 8.9 0.00019 23.9 5.3 36 9-44 2-37 (88)
78 PF10041 DUF2277: Uncharacteri 65.4 31 0.00066 21.5 5.9 56 9-65 2-61 (78)
79 KOG3442 Uncharacterized conser 65.2 9.6 0.00021 26.0 3.2 33 12-44 61-93 (132)
80 PF07709 SRR: Seven Residue Re 64.0 7.4 0.00016 16.1 1.6 13 52-64 2-14 (14)
81 cd01388 SOX-TCF_HMG-box SOX-TC 45.0 38 0.00082 20.0 3.3 40 29-73 14-53 (72)
82 KOG0527 HMG-box transcription 39.8 35 0.00076 27.0 3.1 41 29-74 75-115 (331)
83 cd00084 HMG-box High Mobility 39.3 56 0.0012 18.2 3.3 41 28-73 12-52 (66)
84 cd01780 PLC_epsilon_RA Ubiquit 37.8 40 0.00087 21.8 2.6 34 9-42 10-43 (93)
85 cd01390 HMGB-UBF_HMG-box HMGB- 34.9 64 0.0014 18.1 3.1 39 30-73 14-52 (66)
86 PF12434 Malate_DH: Malate deh 34.3 57 0.0012 16.2 2.3 17 24-40 10-26 (28)
87 PF14706 Tnp_DNA_bind: Transpo 33.2 52 0.0011 19.2 2.4 41 25-67 15-57 (58)
88 PF00076 RRM_1: RNA recognitio 32.5 36 0.00078 19.0 1.7 23 15-37 3-25 (70)
89 PF08447 PAS_3: PAS fold; Int 32.3 8 0.00017 23.1 -1.3 29 10-42 6-35 (91)
90 PRK00810 nifW nitrogenase stab 32.0 75 0.0016 21.2 3.3 55 7-62 16-76 (113)
91 COG2879 Uncharacterized small 31.5 1E+02 0.0022 18.5 3.4 14 31-44 28-41 (65)
92 cd01389 MATA_HMG-box MATA_HMG- 30.8 88 0.0019 18.6 3.3 40 28-73 13-52 (77)
93 PF03206 NifW: Nitrogen fixati 30.5 65 0.0014 21.2 2.8 58 6-63 11-74 (105)
94 COG0089 RplW Ribosomal protein 28.0 57 0.0012 21.1 2.2 20 15-34 25-44 (94)
95 COG4371 Predicted membrane pro 27.4 1.5E+02 0.0032 23.0 4.6 52 19-76 152-203 (334)
96 KOG3960 Myogenic helix-loop-he 27.2 42 0.0009 25.8 1.6 14 51-64 128-141 (284)
97 PRK10613 hypothetical protein; 26.8 25 0.00055 21.6 0.3 11 23-33 64-74 (74)
98 PF04967 HTH_10: HTH DNA bindi 25.9 22 0.00048 20.4 -0.0 21 15-35 32-52 (53)
99 PF10769 DUF2594: Protein of u 25.5 28 0.0006 21.4 0.3 11 23-33 64-74 (74)
100 PF15178 TOM_sub5: Mitochondri 25.3 1.4E+02 0.003 16.9 3.2 24 13-36 2-25 (51)
101 CHL00030 rpl23 ribosomal prote 24.6 74 0.0016 20.4 2.2 20 15-34 23-42 (93)
102 PF12725 DUF3810: Protein of u 24.3 1.6E+02 0.0036 22.9 4.5 57 10-66 82-149 (318)
103 COG3755 Uncharacterized protei 23.6 1.8E+02 0.0039 19.9 4.0 44 22-72 48-92 (127)
104 TIGR03180 UraD_2 OHCU decarbox 22.8 2.7E+02 0.0059 19.4 6.1 25 20-44 31-66 (158)
105 PF06975 DUF1299: Protein of u 22.4 22 0.00049 19.5 -0.4 11 57-67 10-20 (47)
106 PRK13798 putative OHCU decarbo 22.1 2.9E+02 0.0063 19.4 6.1 42 20-61 41-109 (166)
107 KOG2320 RAS effector RIN1 (con 21.9 1.2E+02 0.0026 26.1 3.5 39 16-63 395-433 (651)
108 TIGR03636 L23_arch archaeal ri 21.8 94 0.002 19.2 2.2 20 15-34 18-37 (77)
109 smart00362 RRM_2 RNA recogniti 21.6 1E+02 0.0022 16.5 2.3 20 15-34 4-23 (72)
110 smart00398 HMG high mobility g 21.5 1.5E+02 0.0032 16.6 3.0 40 29-73 14-53 (70)
111 PF11608 Limkain-b1: Limkain b 21.4 1.1E+02 0.0024 19.6 2.5 27 13-39 5-31 (90)
112 PF04719 TAFII28: hTAFII28-lik 21.4 81 0.0017 20.1 1.9 14 21-34 77-90 (90)
113 PF04949 Transcrip_act: Transc 21.0 1.3E+02 0.0029 21.2 3.0 24 47-70 62-85 (159)
114 PRK05738 rplW 50S ribosomal pr 20.4 1E+02 0.0022 19.6 2.2 20 15-34 24-43 (92)
115 PF14893 PNMA: PNMA 20.2 88 0.0019 24.8 2.3 20 15-34 23-42 (331)
116 smart00360 RRM RNA recognition 20.1 1.2E+02 0.0025 16.1 2.3 21 15-35 1-21 (71)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=194.92 Aligned_cols=74 Identities=53% Similarity=0.874 Sum_probs=70.3
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
..+|||+||||+++||.+|||+|||+||++||||+++++++|+++|+.|++||+|||||++|+.||++|..++.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 56899999999999999999999999999999999998899999999999999999999999999999877654
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-27 Score=180.86 Aligned_cols=77 Identities=47% Similarity=0.768 Sum_probs=73.0
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccccc
Q 033253 7 NTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKY 83 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (123)
-..+|||+||||+++|+..|||+|||+||+++|||+|+++|.|.+.|+.|+.||+|||||++|+.||.+|++++...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999998887743
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=3.5e-24 Score=168.51 Aligned_cols=72 Identities=50% Similarity=0.792 Sum_probs=67.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++||.+|||+|||+||+++|||+++.+++++++|+.|++||+||+||.+|..||++|..++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 379999999999999999999999999999999988777899999999999999999999999999887654
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.5e-23 Score=160.57 Aligned_cols=71 Identities=49% Similarity=0.763 Sum_probs=65.8
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
.+..+|+||||+++|+.+|||+|||+||+++||||++. +.++|+.|..||+|||||++|..||++|..++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 35689999999999999999999999999999999876 679999999999999999999999999977654
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.6e-23 Score=163.67 Aligned_cols=71 Identities=45% Similarity=0.678 Sum_probs=66.1
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++. +.|+++|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 4799999999999999999999999999999999874 6789999999999999999999999999887554
No 6
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=3.3e-23 Score=163.09 Aligned_cols=72 Identities=47% Similarity=0.822 Sum_probs=67.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++.+++++++|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 479999999999999999999999999999999988778899999999999999999999999999886543
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=4.2e-23 Score=163.48 Aligned_cols=69 Identities=49% Similarity=0.748 Sum_probs=65.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCC
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI 77 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (123)
.+|||+||||+++|+.++||+|||+||+++|||++++++++++.|+.|++||+||+||.+|..||++|.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 489999999999999999999999999999999998777899999999999999999999999999864
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.4e-22 Score=158.22 Aligned_cols=71 Identities=42% Similarity=0.762 Sum_probs=65.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++. ++++++|+.|++||++|+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 4699999999999999999999999999999999864 6788999999999999999999999999886543
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.8e-22 Score=157.72 Aligned_cols=72 Identities=49% Similarity=0.829 Sum_probs=66.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++.. .+++++|+.|++||+||+||.+|..||.+|..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 47999999999999999999999999999999998754 5688999999999999999999999999886543
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.5e-22 Score=157.77 Aligned_cols=71 Identities=42% Similarity=0.762 Sum_probs=66.9
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+|++++|||+++.++++.++|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 69999999999999999999999999999999988778899999999999999999999999999886543
No 11
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.87 E-value=2.7e-22 Score=157.68 Aligned_cols=72 Identities=50% Similarity=0.822 Sum_probs=67.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.+|||+||||+++|+.++||+|||+||+++|||+++.++++++.|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 479999999999999999999999999999999998777899999999999999999999999999887654
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=3.2e-22 Score=159.62 Aligned_cols=69 Identities=45% Similarity=0.717 Sum_probs=63.3
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
...|||+||||+++||.++||+|||+||+++|||+++. .++|+.|++||+||+||.+|..||.+|..++
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 36799999999999999999999999999999999753 4899999999999999999999999887654
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.1e-22 Score=157.31 Aligned_cols=72 Identities=49% Similarity=0.892 Sum_probs=67.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++.+++++++|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 369999999999999999999999999999999998777899999999999999999999999999886654
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.1e-22 Score=156.96 Aligned_cols=72 Identities=44% Similarity=0.792 Sum_probs=67.5
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++++++++++|+.|++||+||+||.+|..||.+|..++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 479999999999999999999999999999999998778899999999999999999999999999886654
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=4.3e-22 Score=157.44 Aligned_cols=72 Identities=54% Similarity=0.884 Sum_probs=67.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++++++++++|+.|++||+||+||.+|..||.+|..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 379999999999999999999999999999999998777899999999999999999999999999876544
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=6.1e-22 Score=156.23 Aligned_cols=72 Identities=49% Similarity=0.785 Sum_probs=66.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
..|||+||||+++|+.+|||+|||+||+++|||++++ +.++++|+.|++||+||+||.+|..||++|..++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 5799999999999999999999999999999999875 77899999999999999999999999998876553
No 17
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.8e-22 Score=156.44 Aligned_cols=71 Identities=41% Similarity=0.709 Sum_probs=65.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.+|||+||||+++|+.++||+|||+||+++|||+++. +.++++|+.|++||+||+||.+|..||++|..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 4799999999999999999999999999999999874 6788999999999999999999999999886654
No 18
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.1e-22 Score=148.92 Aligned_cols=73 Identities=48% Similarity=0.749 Sum_probs=68.6
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
...|+|+||||+++++.++|||+||+|++++|||+++.+|++.+.|+.|++||+||+||.+|..||.+|..++
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l 101 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL 101 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence 3567999999999999999999999999999999999989999999999999999999999999999876654
No 19
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=9.9e-22 Score=155.55 Aligned_cols=72 Identities=50% Similarity=0.799 Sum_probs=67.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcc----cCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDF----TGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~----~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++.+++++++|+.|++||+||+||.+|..||+ +|..++
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 479999999999999999999999999999999988777899999999999999999999999998 776554
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.1e-21 Score=155.44 Aligned_cols=71 Identities=49% Similarity=0.773 Sum_probs=66.6
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+||+++|||++++++.++++|+.|++||+||+||.+|..||++|..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 48999999999999999999999999999999998778899999999999999999999999999886543
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.1e-21 Score=155.68 Aligned_cols=71 Identities=46% Similarity=0.791 Sum_probs=66.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+|++++|||+++++..+++.|+.|++||++|+||.+|..||.+|..++
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 69999999999999999999999999999999988777889999999999999999999999999886554
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=153.85 Aligned_cols=72 Identities=49% Similarity=0.881 Sum_probs=67.2
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||++++++.++++|+.|++||++|+||.+|..||.++..++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 479999999999999999999999999999999988777889999999999999999999999999876544
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.1e-21 Score=154.74 Aligned_cols=71 Identities=52% Similarity=0.819 Sum_probs=65.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+||+++|||+++. +.++++|+.|++||+||+||.+|..||++|..++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 3699999999999999999999999999999999864 6788999999999999999999999999886654
No 24
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=149.45 Aligned_cols=69 Identities=49% Similarity=0.789 Sum_probs=64.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY 78 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (123)
..|||+||||+++||.++||+|||+||+++|||+++ ++.++++|+.|++||++|+||.+|..||.+|..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 479999999999999999999999999999999986 477899999999999999999999999997764
No 25
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.8e-21 Score=148.58 Aligned_cols=82 Identities=41% Similarity=0.639 Sum_probs=74.1
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccccCHHHH
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTLREY 88 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~ 88 (123)
..|||+||||+++++.++|++|||+.++++|||+|+++|+|.+.|..|.+||+||+|+..|.+||..+..+.......+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~~~~d~ 83 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQGREDQ 83 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccchhhhhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999988777665533333
Q ss_pred HH
Q 033253 89 LA 90 (123)
Q Consensus 89 ~~ 90 (123)
..
T Consensus 84 ~~ 85 (296)
T KOG0691|consen 84 AD 85 (296)
T ss_pred HH
Confidence 33
No 26
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.85 E-value=1.2e-21 Score=118.32 Aligned_cols=63 Identities=49% Similarity=0.890 Sum_probs=59.7
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 11 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
|||+||||+++++.++||++|+++++.+|||+++... .+.+.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987755 68899999999999999999999998
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.4e-21 Score=154.40 Aligned_cols=71 Identities=52% Similarity=0.803 Sum_probs=65.6
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
+.|||+||||+++|+.++||+|||+||+++|||+++. +.++++|+.|++||+||+||.+|..||.++..++
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 4799999999999999999999999999999999875 6788999999999999999999999999876543
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.5e-21 Score=153.84 Aligned_cols=71 Identities=44% Similarity=0.722 Sum_probs=65.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.++||+|||+|++++|||+++. +.++++|+.|++||+||+||.+|..||.+|..++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 3799999999999999999999999999999999874 6788999999999999999999999999886543
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.8e-21 Score=153.51 Aligned_cols=68 Identities=47% Similarity=0.724 Sum_probs=64.2
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY 78 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (123)
.|||+||||+++|+.++||+|||+||+++|||+++ +++++++|+.|++||+||+||.+|..||.+|..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999987 477899999999999999999999999998753
No 30
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=4.6e-21 Score=150.65 Aligned_cols=71 Identities=56% Similarity=0.952 Sum_probs=65.9
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+|++++|||+++.+. .++++|+.|++||++|+||.+|..||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 69999999999999999999999999999999987654 688999999999999999999999999886544
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=6.4e-21 Score=150.74 Aligned_cols=72 Identities=49% Similarity=0.804 Sum_probs=67.4
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
..|||+||||+++|+.+|||+|||+||+++|||+++.+++++++|+.|++||++|+||.+|..||.+|..++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 479999999999999999999999999999999998778899999999999999999999999999876543
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-21 Score=151.49 Aligned_cols=88 Identities=39% Similarity=0.619 Sum_probs=73.3
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc---
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID--- 81 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~--- 81 (123)
....+.||+||||.++++..+||++||+||+++|||+++.. .++.++|..|+.||+|||||..|.+||.+....+.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~ 83 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN 83 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence 34568899999999999999999999999999999997654 57999999999999999999999999997764333
Q ss_pred ---ccCHHHHHHHHh
Q 033253 82 ---KYTLREYLARFK 93 (123)
Q Consensus 82 ---~~~~~~~~~~~~ 93 (123)
+....+.+..|.
T Consensus 84 s~~~~~~~dlf~ff~ 98 (508)
T KOG0717|consen 84 SDTGVQIEDLFQFFT 98 (508)
T ss_pred CccccchHHHHHHhh
Confidence 234455554443
No 33
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.82 E-value=1.2e-20 Score=160.03 Aligned_cols=77 Identities=35% Similarity=0.497 Sum_probs=70.2
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccccCH
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYTL 85 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~ 85 (123)
...+||+||||+++|+..+||+|||+||+++|||+++++ .+.++|+.|.+||+|||||.+|..||.+|..++....+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~~~ 647 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGVNF 647 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCCCc
Confidence 468999999999999999999999999999999998874 68889999999999999999999999999887765443
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.82 E-value=1.3e-20 Score=147.42 Aligned_cols=69 Identities=55% Similarity=0.894 Sum_probs=64.1
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 11 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
|||+||||+++|+.++||+|||+||+++|||+++ .+.++++|+.|++||++|+||.+|..||.++..++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999987 46688999999999999999999999999876544
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.8e-20 Score=143.26 Aligned_cols=71 Identities=45% Similarity=0.788 Sum_probs=65.9
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE 79 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (123)
...|||+||||+++|+..|||+||++|++++|||.+.. .++.+.|+.|.+||+||+|+++|..||..+..+
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 34499999999999999999999999999999999876 489999999999999999999999999988664
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.3e-20 Score=146.06 Aligned_cols=69 Identities=49% Similarity=0.825 Sum_probs=64.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE 79 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (123)
.|||+||||+++|+.++||+|||+|++++|||+++ ...++++|+.|++||++|+||.+|..||.+|..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 58999999999999999999999999999999986 4678899999999999999999999999987653
No 37
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-20 Score=149.49 Aligned_cols=76 Identities=43% Similarity=0.676 Sum_probs=69.2
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
...+.+||.+||||++||.+|||+|||++++.+|||+..++. .|++.|..|.+||||||||.+|.+||..|..|++
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 344569999999999999999999999999999999987543 4889999999999999999999999999988887
No 38
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.7e-20 Score=147.73 Aligned_cols=70 Identities=41% Similarity=0.669 Sum_probs=64.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+|++++|||+++ ...++++|+.|++||++|+|+.+|..||.+|..++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 69999999999999999999999999999999976 36688899999999999999999999999876543
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.7e-20 Score=145.32 Aligned_cols=70 Identities=44% Similarity=0.775 Sum_probs=64.9
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.|||+||||+++|+.++||+|||+|++++|||+++. +.++++|+.|++||+||+||.+|..||.+|..++
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 699999999999999999999999999999999764 6688999999999999999999999999886543
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.80 E-value=8.2e-20 Score=140.61 Aligned_cols=66 Identities=41% Similarity=0.674 Sum_probs=62.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
.|||+||||++.++.++||+|||+||+++|||+++. +.++++|+.|++||++|+||.+|..||..+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 699999999999999999999999999999999764 678999999999999999999999999865
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=133.21 Aligned_cols=72 Identities=49% Similarity=0.786 Sum_probs=64.9
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN--GDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE 79 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~--~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (123)
...|+|+||||.++|+..+|++||++|++++|||+++ ...++.+.|++|+.||+||+|.++|..||..|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 3469999999999999999999999999999999985 23468899999999999999999999999988543
No 42
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.79 E-value=2.4e-19 Score=106.75 Aligned_cols=58 Identities=59% Similarity=0.956 Sum_probs=54.1
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHhCCch
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG-DSAVTAKFQEINEAYAVLSDPD 67 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~~~~~f~~i~~Ay~~L~d~~ 67 (123)
+|||+||||+++++.++||++|+++++.+|||++++ .+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999875 4678899999999999999985
No 43
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.79 E-value=2.1e-19 Score=149.62 Aligned_cols=71 Identities=45% Similarity=0.791 Sum_probs=66.1
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
.|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||++|+||.+|..||.++..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 699999999999999999999999999999999776 67888999999999999999999999998876654
No 44
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.78 E-value=7.9e-19 Score=102.68 Aligned_cols=55 Identities=64% Similarity=0.979 Sum_probs=51.6
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCC
Q 033253 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 11 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d 65 (123)
|||+||||++.++.++||++|+++++++|||++++...+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999987656788999999999999986
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.75 E-value=2.4e-18 Score=120.48 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=62.0
Q ss_pred cCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccc
Q 033253 10 KDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK 82 (123)
Q Consensus 10 ~d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (123)
..+|+||||+++| |.++||+|||++++++|||++++ ++.|+.|++||++|+|+.+|..||..|......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence 4689999999999 99999999999999999999643 379999999999999999999999988665443
No 46
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.8e-18 Score=123.72 Aligned_cols=73 Identities=32% Similarity=0.558 Sum_probs=66.7
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY 78 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (123)
....-|+|+||||+++++.+|||+|||+|++++||||++..++.++.|..|.+||+.|+|+..|..|..+|..
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 3456799999999999999999999999999999999887677788899999999999999999999988754
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=5.6e-18 Score=131.54 Aligned_cols=68 Identities=46% Similarity=0.788 Sum_probs=63.2
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 7 NTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
++.+|||+||||.++|+..||.+|||++|.+||||...+.++ |+..|.-|..|-+||+||++|..+|.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 468999999999999999999999999999999999876543 88899999999999999999999993
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.1e-18 Score=120.74 Aligned_cols=68 Identities=53% Similarity=0.884 Sum_probs=64.2
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA-VTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~-~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
...+||+||||+++++..+|+++||++++++|||+++..+. +.+.|+.|++||++|+|+..|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45789999999999999999999999999999999988775 999999999999999999999999974
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.68 E-value=8.4e-17 Score=114.84 Aligned_cols=66 Identities=27% Similarity=0.520 Sum_probs=58.4
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 10 KDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 10 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
.|||+||||++. ++..+|+++||++++++|||+..+.+. +.+.+..|++||++|+||.+|..|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999995 788999999999999999999765432 566889999999999999999999864
No 50
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=2.4e-16 Score=112.60 Aligned_cols=69 Identities=22% Similarity=0.403 Sum_probs=61.1
Q ss_pred CCccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 7 NTQKDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
++..|||++|||++. .+..+|+++||++++++|||+..+.+. +.+.+..|++||++|+||.+|..|+..
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 367899999999996 678999999999999999999866543 556799999999999999999999963
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=2.4e-16 Score=111.98 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=57.8
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 10 KDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 10 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
.|||+||||++. ++..+|+++||++++++|||+..+..+ +.+.+..|++||++|+||.+|..|....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999996 789999999999999999999765332 3345789999999999999999997644
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=3.6e-16 Score=112.05 Aligned_cols=67 Identities=24% Similarity=0.404 Sum_probs=58.5
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHH-----HHHHHHHHHHHhCCchhhhhhcc
Q 033253 8 TQKDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSAVTA-----KFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~-----~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
...|||+||||++. ++..+|+++||++++++|||+....+..++ .+..||+||++|+||.+|..|..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 34799999999985 689999999999999999999876555443 35899999999999999999985
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.3e-16 Score=125.18 Aligned_cols=68 Identities=32% Similarity=0.510 Sum_probs=64.6
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
+.+|+|.+|||+++++.++|||.||++|..+|||||. .+.|++.|+.|+.||++|+|+.+|..||...
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 3789999999999999999999999999999999988 5899999999999999999999999999754
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4e-16 Score=116.40 Aligned_cols=67 Identities=31% Similarity=0.610 Sum_probs=62.2
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
+.+|+|+||||.+.++..+|.+|||+||+++|||++++ +++.+.|+.|..||++|.|.+.|..||-.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHH
Confidence 46899999999999999999999999999999999876 56669999999999999999999999953
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-15 Score=117.05 Aligned_cols=70 Identities=49% Similarity=0.850 Sum_probs=65.7
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 5 DNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 5 ~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
..++..|||.||||.+.++..+||+|||++++.+|||++.+. .+++..|+.|.+||.||+||.+|.+||.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 356778999999999999999999999999999999998877 6799999999999999999999999997
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-14 Score=108.81 Aligned_cols=73 Identities=53% Similarity=0.803 Sum_probs=64.3
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
..|+|+||+|.+.++..+|++||+++++.+|||+++.. ..++.+|++|.+||++|+|+.+|..||+.+..+..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 46899999999999999999999999999999997765 24555899999999999999999999999864443
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.51 E-value=2.1e-14 Score=96.25 Aligned_cols=53 Identities=34% Similarity=0.496 Sum_probs=47.3
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhC
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 64 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~ 64 (123)
...++|+||||+++++.++||++||+|++++|||+.++ .+.|..|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999998432 367889999999985
No 58
>PHA02624 large T antigen; Provisional
Probab=99.51 E-value=3.3e-14 Score=117.27 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=65.2
Q ss_pred ccCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhh--ccc---CCcccc
Q 033253 9 QKDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY--DFT---GIYEID 81 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y--d~~---~~~~~~ 81 (123)
..++|+||||+++| +..+||+|||++++++|||+.+. ++.|+.|++||++|+|+.+|..| |.. +.-...
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v~~~~ 85 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEIPTYG 85 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcccccccccCCCCCc
Confidence 56899999999999 99999999999999999999543 47999999999999999999999 432 111223
Q ss_pred ccCHHHHHHHHhh
Q 033253 82 KYTLREYLARFKG 94 (123)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (123)
.....+|+..|+.
T Consensus 86 ~~~w~~ww~~f~~ 98 (647)
T PHA02624 86 TPEWEQWWEEFNE 98 (647)
T ss_pred cccHHHHHHHhhh
Confidence 4455556655553
No 59
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.48 E-value=5.8e-14 Score=106.47 Aligned_cols=59 Identities=37% Similarity=0.541 Sum_probs=51.7
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C----hHHHHHHHHHHHHHHHhCC
Q 033253 7 NTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG---D----SAVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~----~~~~~~f~~i~~Ay~~L~d 65 (123)
....++|+||||++++|.++||++||+|++++|||+..+ + +.+.++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999643 1 2478899999999999974
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=3.3e-13 Score=96.51 Aligned_cols=65 Identities=25% Similarity=0.391 Sum_probs=57.1
Q ss_pred cCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 10 KDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 10 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
.|||++||||+. .+...++++|+++.+.+|||+....+. +.+.-..||+||++|+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999985 899999999999999999999876553 34456799999999999999999955
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.6e-12 Score=103.68 Aligned_cols=70 Identities=36% Similarity=0.615 Sum_probs=63.0
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChHHHHHHHHHHHHHHHhCCchhhhhhcccCC
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG-----DSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI 77 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (123)
+.-|+|+|||+..+++..+||++||+|+.++||||.+. .++.++.++.|++||+.|+|...|..|-.+|.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 45699999999999999999999999999999999764 24678899999999999999999999987763
No 62
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.7e-12 Score=95.17 Aligned_cols=92 Identities=28% Similarity=0.404 Sum_probs=73.8
Q ss_pred CCCccCccccccCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCc--
Q 033253 6 NNTQKDYYKILEVDY---DATDEKIRLNYRKLALKWHPDKH--NGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIY-- 78 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~---~a~~~~Ik~ayr~l~~~~hPD~~--~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~-- 78 (123)
++++.|+|.+|||+. .+++.+|.++.++.+.++|||+. +++....+.|+.|+.||+||+|+.+|..||+....
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 456789999999986 68899999999999999999996 33345678999999999999999999999985422
Q ss_pred --cccccCHHHHHHHHhhhhh
Q 033253 79 --EIDKYTLREYLARFKGMIL 97 (123)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~ 97 (123)
.....++.+|++.|...+-
T Consensus 119 vppp~~~t~~~Ffe~w~pvFe 139 (379)
T COG5269 119 VPPPRIYTPDEFFEVWEPVFE 139 (379)
T ss_pred CCCccCCCchhHHHHHHHHHH
Confidence 2234577777766655543
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.5e-12 Score=91.85 Aligned_cols=65 Identities=31% Similarity=0.538 Sum_probs=59.9
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
+-|+|+||.|.|..+.++||+.||+|++.+|||+|+.+ +.|...|--|.+||.+|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 57899999999999999999999999999999999988 668899999999999999998776554
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.26 E-value=1.4e-11 Score=86.94 Aligned_cols=56 Identities=30% Similarity=0.530 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 21 DATDEKIRLNYRKLALKWHPDKHNGDS-----AVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~~~~~~-----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
..+..+|+++||++++++|||+..+.+ .+.+.+..|++||++|+||.+|..|....
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 357899999999999999999865433 25678999999999999999999998754
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.8e-11 Score=86.91 Aligned_cols=107 Identities=22% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHH-HhCCchhhhhhcccCCccccccCH
Q 033253 7 NTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYA-VLSDPDKRLDYDFTGIYEIDKYTL 85 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~-~L~d~~~R~~Yd~~~~~~~~~~~~ 85 (123)
.+-+.+|.||||..+|+..+++.||..|++++|||... ++...++|.+|.+||. ||+....+. +-..+.+.+.++.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~~~~kt--n~~qn~~edee~~ 120 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQEKFAKT--NARQNIGEDEEDA 120 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHHHHHh--hhccccccchhhH
Confidence 34567999999999999999999999999999999854 4566789999999998 776433321 1112223333344
Q ss_pred HHHH----HHHhhhhhhcccCCCCCCccccccccC
Q 033253 86 REYL----ARFKGMILTCNGLGISHTSMWSQQLTE 116 (123)
Q Consensus 86 ~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 116 (123)
.+|- .--...++++.|.|+++..++++.+..
T Consensus 121 ~efdik~kapqhrhyls~egig~gtp~qrekhyqq 155 (342)
T KOG0568|consen 121 EEFDIKHKAPQHRHYLSFEGIGFGTPFQREKHYQQ 155 (342)
T ss_pred HHhhhccCCchhhhhhcccCcccCCchHHHHHHHH
Confidence 4441 111233456689999888888877654
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-07 Score=62.54 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=45.8
Q ss_pred CCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCc
Q 033253 7 NTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDP 66 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~ 66 (123)
+..+.--.||||+++++.+.||+|+|+++...|||+.+++ -.-..|++|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP----YLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH----HHHHHHHHHHHHHhcc
Confidence 3444555699999999999999999999999999997653 3334699999999754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=9.3e-08 Score=83.23 Aligned_cols=54 Identities=41% Similarity=0.582 Sum_probs=45.7
Q ss_pred ccCccccccCCC----CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCC
Q 033253 9 QKDYYKILEVDY----DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 9 ~~d~Y~vLgv~~----~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d 65 (123)
.-+-|+||.|+- .-..+.||++|++||.++||||| |+..+.|..+++|||.|..
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence 345799999975 33568999999999999999997 4567899999999999983
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.4e-05 Score=56.12 Aligned_cols=68 Identities=24% Similarity=0.499 Sum_probs=54.9
Q ss_pred CCccCccccccCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 7 NTQKDYYKILEVDY--DATDEKIRLNYRKLALKWHPDKHNGD-----SAVTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~--~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
....+||.++|... ..++..++.-|.-..+++|||+.... ..+.+....|++||.+|.||.+|..|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34678999997654 56777788799999999999984322 2467788999999999999999999954
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.69 E-value=4.6e-05 Score=61.96 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=35.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---H----HHHHHHHHHHHHHH
Q 033253 16 LEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---A----VTAKFQEINEAYAV 62 (123)
Q Consensus 16 Lgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~---~----~~~~f~~i~~Ay~~ 62 (123)
++|...++.++||++||+.++.+||||.+..+ + +++.|-.+++|+..
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34556789999999999999999999987653 1 45556666666654
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=7.7e-05 Score=53.29 Aligned_cols=54 Identities=39% Similarity=0.585 Sum_probs=45.8
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---h----HHHHHHHHHHHHHHHh
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---S----AVTAKFQEINEAYAVL 63 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~---~----~~~~~f~~i~~Ay~~L 63 (123)
.+.|.+|++....+..+|+++|+++....|||+.... . .+.+.+..|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999974321 2 3677888999999753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00031 Score=50.18 Aligned_cols=71 Identities=27% Similarity=0.445 Sum_probs=55.3
Q ss_pred CccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 11 DYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 11 d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
+++..+|+++. ...+.++..|+.+.+.+|||.....+. +-+.+..++.||.+|.+|..|..|=.....|..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~ 79 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD 79 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence 45556666664 467889999999999999999766554 335788999999999999999999765554443
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.36 E-value=0.0069 Score=41.36 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=35.6
Q ss_pred CccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCC
Q 033253 11 DYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 11 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d 65 (123)
.-..||||++..+.++|.+.|..|....+|++.++ .-.-..|..|.+.|..
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999998543 2333467778877753
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=92.54 E-value=0.42 Score=31.86 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHhCCch
Q 033253 20 YDATDEKIRLNYRKLALKWHPDKHNGDSA----VTAKFQEINEAYAVLSDPD 67 (123)
Q Consensus 20 ~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~----~~~~f~~i~~Ay~~L~d~~ 67 (123)
...+..+++.|-|..-+++|||.....|+ .++.++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 35577899999999999999998766654 3556788888778777654
No 74
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=0.17 Score=39.36 Aligned_cols=55 Identities=35% Similarity=0.512 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 21 DATDEKIRLNYRKLALKWHPDKHNG----DSAVTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
.++..+|..+|+..+..+||++... ....++.++.|.+||.||.+...|...|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 4577889999999999999998641 224567899999999999987666666553
No 75
>PF13446 RPT: A repeated domain in UCH-protein
Probab=90.53 E-value=0.66 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.7
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHH
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLAL 36 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~ 36 (123)
.+-|++|||++..+...|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999877
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.74 E-value=1.1 Score=32.58 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhC
Q 033253 19 DYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLS 64 (123)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~ 64 (123)
+++|+.+||.+|+.++..++--| + +.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-----~---~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-----E---KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-----H---HHHHHHHHHHHHHH
Confidence 57899999999999999998433 2 45557899997643
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=80.02 E-value=8.9 Score=23.87 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=29.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 44 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~ 44 (123)
++|--+++|+.|-++..||+.|-++.++++.-...+
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 566778899999999999999999999988554433
No 78
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.37 E-value=31 Score=21.51 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=37.8
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHH----HHHHHHHHHhCC
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKF----QEINEAYAVLSD 65 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f----~~i~~Ay~~L~d 65 (123)
|+|--.+.|+.|-++.+||..|-.+.+++..--..++ ....+.| ..|..+-..|.+
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps-~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS-AANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566677889999999999999999999986554433 1222333 345555554544
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.20 E-value=9.6 Score=26.00 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=29.0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 033253 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDKHN 44 (123)
Q Consensus 12 ~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~ 44 (123)
--.||+|++..+.++|.+.|..|-....+.+.+
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCc
Confidence 457999999999999999999999988887744
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=64.00 E-value=7.4 Score=16.08 Aligned_cols=13 Identities=46% Similarity=0.841 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhC
Q 033253 52 KFQEINEAYAVLS 64 (123)
Q Consensus 52 ~f~~i~~Ay~~L~ 64 (123)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4667788887764
No 81
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=45.03 E-value=38 Score=20.02 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 29 LNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
+..|...+.-||+... .+..+.|.+.|..|++.++...++
T Consensus 14 ~~~r~~~~~~~p~~~~-----~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLKEN-----RAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4456666777998532 367788999999999766554444
No 82
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=39.78 E-value=35 Score=27.01 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 29 LNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
+..|+...+--||..+. |.-|+|-+-|+.|++.++|-.+|.
T Consensus 75 q~~RRkma~qnP~mHNS-----EISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHNS-----EISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcchhhH-----HHHHHHHHHHhhcCHhhhccHHHH
Confidence 45666666667987543 789999999999999999988884
No 83
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=39.28 E-value=56 Score=18.22 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.++...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 12 SQEHRAEVKAENPGLS-----VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4556677777888843 2367788999999998655444433
No 84
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=37.81 E-value=40 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDK 42 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~ 42 (123)
...+|.||-++..+|.++|-+.--..|++.+||-
T Consensus 10 ~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 10 PDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 3569999999999998888777666677777775
No 85
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=34.89 E-value=64 Score=18.13 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 30 NYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 30 ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~r~~~~~~~p~~~-----~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 14 EQRPKLKKENPDAS-----VTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34555666788742 3378889999999998655444333
No 86
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=34.34 E-value=57 Score=16.22 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhCC
Q 033253 24 DEKIRLNYRKLALKWHP 40 (123)
Q Consensus 24 ~~~Ik~ayr~l~~~~hP 40 (123)
.++.+.+-|+.|+.+|-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788889999999983
No 87
>PF14706 Tnp_DNA_bind: Transposase DNA-binding; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A.
Probab=33.21 E-value=52 Score=19.23 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCChHHHHHHHHHHHHHHHhCCch
Q 033253 25 EKIRLNYRKLALKW--HPDKHNGDSAVTAKFQEINEAYAVLSDPD 67 (123)
Q Consensus 25 ~~Ik~ayr~l~~~~--hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~ 67 (123)
+-+.+...+++..+ ||.. .-+.+-+....+.-||..|+++.
T Consensus 15 ~Rl~~Rl~~l~~~la~~p~~--Sip~a~~~wa~tkaAYRF~~N~~ 57 (58)
T PF14706_consen 15 KRLTRRLVKLAESLAEKPGA--SIPQACQDWAETKAAYRFFRNPR 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHTTTS---HHHHTT-HHHHHHHHHHHT-TT
T ss_pred chHHHHHHHHHHHHHHCCCC--ccchhccCHHHHHHHHHhhcCCC
Confidence 34566777776644 6653 33566667788999999998863
No 88
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=32.51 E-value=36 Score=18.97 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=18.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKLALK 37 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l~~~ 37 (123)
|=|||++++.++|++.+.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 45899999999999999876544
No 89
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=32.31 E-value=8 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=18.7
Q ss_pred cCccccccCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 033253 10 KDYYKILEVDYDATDEKI-RLNYRKLALKWHPDK 42 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~I-k~ayr~l~~~~hPD~ 42 (123)
.+++++||+++ +++ ...........|||=
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 56788898866 445 445566777889984
No 90
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=31.96 E-value=75 Score=21.21 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCccCccccccCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHH-HHHHHHHHH
Q 033253 7 NTQKDYYKILEVDYD-----ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKF-QEINEAYAV 62 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~-----a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f-~~i~~Ay~~ 62 (123)
..-++|++.|||+-+ ...=.|-|.|............ .+.+..... ..+.+||+.
T Consensus 16 ssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~~~-~e~~~~~~yr~aL~~AY~d 76 (113)
T PRK00810 16 SSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFAGL-PEAEARARCRAVLERAYAD 76 (113)
T ss_pred ccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHH
Confidence 345788999999854 4666777788777664431111 112222333 367778865
No 91
>COG2879 Uncharacterized small protein [Function unknown]
Probab=31.52 E-value=1e+02 Score=18.51 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=10.6
Q ss_pred HHHHHHHhCCCCCC
Q 033253 31 YRKLALKWHPDKHN 44 (123)
Q Consensus 31 yr~l~~~~hPD~~~ 44 (123)
|-.-+++.|||+.+
T Consensus 28 YVehmr~~hPd~p~ 41 (65)
T COG2879 28 YVEHMRKKHPDKPP 41 (65)
T ss_pred HHHHHHHhCcCCCc
Confidence 55667889999865
No 92
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=30.81 E-value=88 Score=18.61 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.++..++.-+|+.. ..+..+.|.+.|..|++.++ ..|-
T Consensus 13 ~~~~r~~~~~~~p~~~-----~~eisk~~g~~Wk~ls~eeK-~~y~ 52 (77)
T cd01389 13 RQDKHAQLKTENPGLT-----NNEISRIIGRMWRSESPEVK-AYYK 52 (77)
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHHH-HHHH
Confidence 4556777788899863 23677889999999986544 4443
No 93
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=30.50 E-value=65 Score=21.17 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCCccCccccccCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHH-HHHHHHHHHh
Q 033253 6 NNTQKDYYKILEVDYD-----ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKF-QEINEAYAVL 63 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~-----a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f-~~i~~Ay~~L 63 (123)
-+.-++|++.|||+-+ +..=.|-+.|.......++.....+.+..... ..+.+||+..
T Consensus 11 L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dF 74 (105)
T PF03206_consen 11 LSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDF 74 (105)
T ss_pred ccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999864 46777888999888888764222222333333 3678888753
No 94
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=28.02 E-value=57 Score=21.07 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.3
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
++-|.+.|+..+||+|...+
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57788999999999998877
No 95
>COG4371 Predicted membrane protein [Function unknown]
Probab=27.44 E-value=1.5e+02 Score=22.96 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 19 DYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 19 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
.--|..+|+|++-.+++.+-.||.+.+ +-..+++|--+|...-.+-.|-...
T Consensus 152 gLLA~a~elk~eL~~iA~~aDt~t~~G------r~~vlQEA~LalLRHPEyWVYg~~~ 203 (334)
T COG4371 152 GLLAEADELKSELQRIAQQADTDTNAG------RARVLQEAALALLRHPEYWVYGNVE 203 (334)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCCCcch------HHHHHHHHHHHHHcCCceeEeccch
Confidence 345788999999999999999998654 4556788777766666777776544
No 96
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=27.17 E-value=42 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhC
Q 033253 51 AKFQEINEAYAVLS 64 (123)
Q Consensus 51 ~~f~~i~~Ay~~L~ 64 (123)
.+.+.||+|+|+|.
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 45889999999985
No 97
>PRK10613 hypothetical protein; Provisional
Probab=26.79 E-value=25 Score=21.59 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=9.0
Q ss_pred CHHHHHHHHHH
Q 033253 23 TDEKIRLNYRK 33 (123)
Q Consensus 23 ~~~~Ik~ayr~ 33 (123)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 67889999984
No 98
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.88 E-value=22 Score=20.37 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=12.8
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKLA 35 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l~ 35 (123)
.|||++.+-...|+++-+++.
T Consensus 32 ~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 32 ELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HhCCCHHHHHHHHHHHHHHHh
Confidence 366666666666666666553
No 99
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=25.50 E-value=28 Score=21.42 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=9.0
Q ss_pred CHHHHHHHHHH
Q 033253 23 TDEKIRLNYRK 33 (123)
Q Consensus 23 ~~~~Ik~ayr~ 33 (123)
+.++||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 67889999984
No 100
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=25.32 E-value=1.4e+02 Score=16.86 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.1
Q ss_pred cccccCCCCCCHHHHHHHHHHHHH
Q 033253 13 YKILEVDYDATDEKIRLNYRKLAL 36 (123)
Q Consensus 13 Y~vLgv~~~a~~~~Ik~ayr~l~~ 36 (123)
+.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999998876544
No 101
>CHL00030 rpl23 ribosomal protein L23
Probab=24.61 E-value=74 Score=20.40 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.6
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
++-|++.|+..|||+|..++
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 56789999999999998877
No 102
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=24.34 E-value=1.6e+02 Score=22.92 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred cCccccccCCC-CCCHHHHHHHHHHHHHHh-------CCCCCCC---ChHHHHHHHHHHHHHHHhCCc
Q 033253 10 KDYYKILEVDY-DATDEKIRLNYRKLALKW-------HPDKHNG---DSAVTAKFQEINEAYAVLSDP 66 (123)
Q Consensus 10 ~d~Y~vLgv~~-~a~~~~Ik~ayr~l~~~~-------hPD~~~~---~~~~~~~f~~i~~Ay~~L~d~ 66 (123)
.++++-||++. ..+.+|+.+-.+.++.++ ++|.... +..-.+.+..+.+||+.|++.
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 45667799987 789999888877765554 3332211 012367788999999998753
No 103
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.62 E-value=1.8e+02 Score=19.87 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHhCCchhhhhh
Q 033253 22 ATDEKIRLNYRKLALKWH-PDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDY 72 (123)
Q Consensus 22 a~~~~Ik~ayr~l~~~~h-PD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 72 (123)
.-.+++.+||..+.+..+ |++. ...+.-+.||-...|...-..+
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~-------~aL~kaQRAWi~fRDadC~~~~ 92 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRT-------KALQKAQRAWIAFRDADCALIK 92 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHHHHHhhHhHHHHh
Confidence 346789999999999887 5541 2477888899888887776665
No 104
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=22.78 E-value=2.7e+02 Score=19.39 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHH-----------HHHhCCCCCC
Q 033253 20 YDATDEKIRLNYRKL-----------ALKWHPDKHN 44 (123)
Q Consensus 20 ~~a~~~~Ik~ayr~l-----------~~~~hPD~~~ 44 (123)
|-+|..++..+.... ++..|||...
T Consensus 31 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~ 66 (158)
T TIGR03180 31 PFASAEALLAAADQAWQNLSEQDLFEALAGHPRIGE 66 (158)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccC
Confidence 445566665555544 4667999853
No 105
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=22.38 E-value=22 Score=19.54 Aligned_cols=11 Identities=55% Similarity=0.927 Sum_probs=9.3
Q ss_pred HHHHHHhCCch
Q 033253 57 NEAYAVLSDPD 67 (123)
Q Consensus 57 ~~Ay~~L~d~~ 67 (123)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 78999999864
No 106
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=22.06 E-value=2.9e+02 Score=19.44 Aligned_cols=42 Identities=26% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHH-----------HHHhCCCCCCCC----------------hHHHHHHHHHHHHHH
Q 033253 20 YDATDEKIRLNYRKL-----------ALKWHPDKHNGD----------------SAVTAKFQEINEAYA 61 (123)
Q Consensus 20 ~~a~~~~Ik~ayr~l-----------~~~~hPD~~~~~----------------~~~~~~f~~i~~Ay~ 61 (123)
|-+|..++..+.... ++..|||..... ++..+.|..+|.+|+
T Consensus 41 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~ 109 (166)
T PRK13798 41 PFADHDALLAAADEALAGLSEADIDEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYE 109 (166)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 445666666655544 567799985421 123456777777775
No 107
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.87 E-value=1.2e+02 Score=26.13 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=29.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHh
Q 033253 16 LEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVL 63 (123)
Q Consensus 16 Lgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L 63 (123)
|-+|..+..++||..++++.+.+||.+ +...+.+|.+.|
T Consensus 395 ~~~Ps~~~mEqvk~k~~~m~r~YSP~k---------kl~~Llk~ckLl 433 (651)
T KOG2320|consen 395 LSTPSDVLMEQVKQKFTAMQRRYSPSK---------KLHALLKACKLL 433 (651)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhChHH---------HHHHHHHHHHHH
Confidence 445667788999999999999999964 455555555544
No 108
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.78 E-value=94 Score=19.18 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=17.5
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
++-|++.++..+||+|..++
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46789999999999998877
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=21.60 E-value=1e+02 Score=16.48 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.6
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
|-||++..+.++|++.+.+.
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 56889999999999888765
No 110
>smart00398 HMG high mobility group.
Probab=21.51 E-value=1.5e+02 Score=16.61 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 29 LNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
...+...+.-||+.. ..+..+.|...|..|++.++....+
T Consensus 14 ~~~r~~~~~~~~~~~-----~~~i~~~~~~~W~~l~~~ek~~y~~ 53 (70)
T smart00398 14 QENRAKIKAENPDLS-----NAEISKKLGERWKLLSEEEKAPYEE 53 (70)
T ss_pred HHHHHHHHHHCcCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555566688753 2367778999999998554444333
No 111
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=21.41 E-value=1.1e+02 Score=19.57 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=20.5
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhC
Q 033253 13 YKILEVDYDATDEKIRLNYRKLALKWH 39 (123)
Q Consensus 13 Y~vLgv~~~a~~~~Ik~ayr~l~~~~h 39 (123)
--|.+||.+.+...|+..-++|+-.|-
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCG 31 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCG 31 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 347889999999999999999988774
No 112
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=21.36 E-value=81 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=10.3
Q ss_pred CCCHHHHHHHHHHH
Q 033253 21 DATDEKIRLNYRKL 34 (123)
Q Consensus 21 ~a~~~~Ik~ayr~l 34 (123)
...+..|++|||+|
T Consensus 77 pl~P~hlreA~rrL 90 (90)
T PF04719_consen 77 PLQPDHLREAYRRL 90 (90)
T ss_dssp S--HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhC
Confidence 45788999999986
No 113
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=20.96 E-value=1.3e+02 Score=21.15 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhCCchhhh
Q 033253 47 SAVTAKFQEINEAYAVLSDPDKRL 70 (123)
Q Consensus 47 ~~~~~~f~~i~~Ay~~L~d~~~R~ 70 (123)
.+...+...|.++.++|.||.++.
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkE 85 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKE 85 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHH
Confidence 345677889999999999997754
No 114
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=20.41 E-value=1e+02 Score=19.58 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=17.2
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
++-|++.++..|||+|..++
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46688999999999998877
No 115
>PF14893 PNMA: PNMA
Probab=20.21 E-value=88 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.3
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
|+|||.+++.++|..+-+.-
T Consensus 23 v~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 23 VLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred eecCCCCCCHHHHHHHHHHh
Confidence 79999999999999986653
No 116
>smart00360 RRM RNA recognition motif.
Probab=20.08 E-value=1.2e+02 Score=16.14 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.4
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKLA 35 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l~ 35 (123)
|-||+...+.++|++.+....
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC
Confidence 347888899999999887653
Done!