Query 033253
Match_columns 123
No_of_seqs 149 out of 1351
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 19:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.9 5E-25 1.7E-29 137.7 7.1 75 6-80 3-77 (79)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 1.3E-24 4.5E-29 136.7 8.0 77 4-80 3-80 (82)
3 2ctq_A DNAJ homolog subfamily 99.9 1.3E-24 4.4E-29 144.4 7.4 85 5-90 15-99 (112)
4 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.9E-24 6.5E-29 134.5 7.3 71 10-81 3-73 (77)
5 2ctp_A DNAJ homolog subfamily 99.9 2.5E-24 8.6E-29 134.3 7.0 74 6-80 3-76 (78)
6 1wjz_A 1700030A21RIK protein; 99.9 3.1E-24 1.1E-28 138.1 6.3 76 2-77 8-89 (94)
7 2cug_A Mkiaa0962 protein; DNAJ 99.9 4.9E-24 1.7E-28 135.9 7.2 75 4-79 11-85 (88)
8 2yua_A Williams-beuren syndrom 99.9 6E-24 2E-28 138.3 7.4 72 5-76 12-83 (99)
9 2ctr_A DNAJ homolog subfamily 99.9 5.9E-24 2E-28 135.6 6.3 73 6-79 3-75 (88)
10 2dmx_A DNAJ homolog subfamily 99.9 8E-24 2.7E-28 135.9 6.7 78 4-81 3-81 (92)
11 2ctw_A DNAJ homolog subfamily 99.9 6.9E-24 2.4E-28 140.3 6.5 75 6-80 13-87 (109)
12 2och_A Hypothetical protein DN 99.9 1.1E-23 3.7E-28 129.9 6.9 67 8-77 6-72 (73)
13 1bq0_A DNAJ, HSP40; chaperone, 99.9 3.4E-24 1.2E-28 140.3 4.4 74 9-82 2-75 (103)
14 2lgw_A DNAJ homolog subfamily 99.9 1.8E-23 6.2E-28 136.2 5.2 72 10-81 2-74 (99)
15 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 3.6E-23 1.2E-27 136.6 5.4 89 5-95 10-102 (109)
16 2o37_A Protein SIS1; HSP40, J- 99.9 4.7E-23 1.6E-27 132.4 5.4 70 8-80 6-75 (92)
17 2l6l_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 141.3 7.3 76 1-76 1-82 (155)
18 3apq_A DNAJ homolog subfamily 99.9 2.4E-22 8.2E-27 144.5 6.0 72 10-81 2-73 (210)
19 2ys8_A RAB-related GTP-binding 99.8 2.1E-21 7.3E-26 124.2 4.9 62 9-71 26-87 (90)
20 3hho_A CO-chaperone protein HS 99.8 6.9E-21 2.4E-25 135.2 5.4 69 8-76 2-77 (174)
21 1gh6_A Large T antigen; tumor 99.8 3.5E-21 1.2E-25 128.2 2.3 65 9-77 7-73 (114)
22 1fpo_A HSC20, chaperone protei 99.8 2.4E-20 8.2E-25 132.0 4.5 67 10-76 1-74 (171)
23 1faf_A Large T antigen; J doma 99.8 2.1E-20 7E-25 117.0 3.3 61 9-73 10-72 (79)
24 3lz8_A Putative chaperone DNAJ 99.8 4.5E-21 1.5E-25 147.8 0.0 70 6-76 24-93 (329)
25 2pf4_E Small T antigen; PP2A, 99.8 5.5E-21 1.9E-25 135.5 0.3 66 8-77 9-76 (174)
26 1iur_A KIAA0730 protein; DNAJ 99.8 3.9E-20 1.3E-24 118.0 3.3 67 6-72 12-79 (88)
27 3bvo_A CO-chaperone protein HS 99.8 1.4E-19 4.6E-24 131.6 6.0 67 8-74 41-114 (207)
28 1n4c_A Auxilin; four helix bun 99.8 5.8E-20 2E-24 131.0 3.0 63 10-72 117-182 (182)
29 2qwo_B Putative tyrosine-prote 99.7 2.4E-19 8.2E-24 115.1 2.4 56 10-65 33-91 (92)
30 3apo_A DNAJ homolog subfamily 99.7 1.5E-19 5.1E-24 150.8 0.4 77 6-82 17-93 (780)
31 3uo3_A J-type CO-chaperone JAC 99.7 5.1E-19 1.8E-23 126.2 2.8 69 5-76 6-81 (181)
32 3ag7_A Putative uncharacterize 99.7 7.8E-19 2.7E-23 115.5 3.3 59 8-67 39-104 (106)
33 2guz_A Mitochondrial import in 99.7 5.9E-19 2E-23 108.2 2.4 59 7-69 11-70 (71)
34 2y4t_A DNAJ homolog subfamily 99.3 2E-12 6.7E-17 98.6 4.9 66 9-74 381-449 (450)
35 2guz_B Mitochondrial import in 99.1 2.8E-11 9.6E-16 72.7 3.9 52 10-65 4-58 (65)
36 2pzi_A Probable serine/threoni 95.0 0.011 3.9E-07 48.4 2.7 48 7-62 626-675 (681)
37 1qqr_A Streptokinase domain B; 41.7 16 0.00054 24.3 2.2 31 12-42 34-64 (138)
38 3nm9_A HMG-D, high mobility gr 41.6 31 0.0011 19.5 3.4 38 28-73 15-52 (73)
39 1hry_A Human SRY; DNA, DNA-bin 40.4 43 0.0015 18.9 3.9 40 28-73 16-55 (76)
40 4a3n_A Transcription factor SO 39.5 24 0.00083 19.6 2.6 40 28-73 14-53 (71)
41 1wz6_A HMG-box transcription f 37.5 50 0.0017 19.0 3.9 40 28-73 19-58 (82)
42 2b7e_A PRE-mRNA processing pro 34.1 64 0.0022 18.1 3.8 47 25-74 3-54 (59)
43 3f27_D Transcription factor SO 34.0 40 0.0014 19.4 3.1 40 28-73 18-57 (83)
44 1ug2_A 2610100B20RIK gene prod 34.0 25 0.00085 21.8 2.1 22 21-42 67-88 (95)
45 2crj_A SWI/SNF-related matrix- 32.2 50 0.0017 19.6 3.4 41 28-73 19-59 (92)
46 2lxi_A RNA-binding protein 10; 31.3 39 0.0013 19.7 2.8 21 15-35 6-26 (91)
47 1hme_A High mobility group pro 31.3 61 0.0021 18.3 3.6 40 28-73 18-57 (77)
48 1i11_A Transcription factor SO 30.3 41 0.0014 19.3 2.7 41 28-73 16-56 (81)
49 2cqn_A Formin-binding protein 29.4 89 0.003 18.3 4.5 53 20-73 4-59 (77)
50 1k99_A Upstream binding factor 28.1 90 0.0031 18.8 4.1 41 28-73 22-62 (99)
51 1ckt_A High mobility group 1 p 26.9 85 0.0029 17.3 4.0 40 29-71 14-53 (71)
52 1wgf_A Upstream binding factor 26.8 45 0.0015 19.8 2.4 39 28-71 32-70 (90)
53 3u2b_C Transcription factor SO 24.7 58 0.002 18.5 2.6 40 28-73 14-53 (79)
54 1iqt_A AUF1, heterogeneous nuc 24.3 66 0.0023 17.4 2.8 20 15-34 4-23 (75)
55 2e6o_A HMG box-containing prot 23.9 60 0.002 19.0 2.6 40 28-73 29-68 (87)
56 2cs1_A PMS1 protein homolog 1; 23.5 51 0.0017 19.5 2.3 41 28-73 19-59 (92)
57 2lr8_A CAsp8-associated protei 29.0 17 0.00059 21.3 0.0 22 21-42 47-68 (70)
58 2d7l_A WD repeat and HMG-box D 22.2 42 0.0014 19.7 1.6 42 28-73 17-58 (81)
59 1vq8_S 50S ribosomal protein L 21.6 61 0.0021 19.5 2.3 21 15-35 26-46 (85)
60 4euw_A Transcription factor SO 20.1 59 0.002 19.9 2.1 41 27-73 40-80 (106)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=137.73 Aligned_cols=75 Identities=40% Similarity=0.635 Sum_probs=69.1
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.....|||+||||+++++.++||++||++++++|||+++..+.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 355789999999999999999999999999999999998778899999999999999999999999999886543
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=136.71 Aligned_cols=77 Identities=43% Similarity=0.696 Sum_probs=69.6
Q ss_pred CCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 4 NDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS-AVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 4 ~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
...+...|||+||||+++++.++||+||+++++++|||+++... .+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 3 SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 44566789999999999999999999999999999999987653 678899999999999999999999999887654
No 3
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=144.39 Aligned_cols=85 Identities=26% Similarity=0.477 Sum_probs=74.2
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccccC
Q 033253 5 DNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDKYT 84 (123)
Q Consensus 5 ~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~ 84 (123)
......|||+||||+++++.++||+|||+|++++|||++++++.+.+.|+.|++||++|+||.+|..||..+..++. ..
T Consensus 15 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~ 93 (112)
T 2ctq_A 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS-MP 93 (112)
T ss_dssp CCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS-SC
T ss_pred cccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC-CC
Confidence 33456899999999999999999999999999999999987788999999999999999999999999998876654 44
Q ss_pred HHHHHH
Q 033253 85 LREYLA 90 (123)
Q Consensus 85 ~~~~~~ 90 (123)
..+|..
T Consensus 94 ~~~w~~ 99 (112)
T 2ctq_A 94 FQQWEA 99 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455543
No 4
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.91 E-value=1.9e-24 Score=134.54 Aligned_cols=71 Identities=46% Similarity=0.747 Sum_probs=66.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
.|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..++.
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 689999999999999999999999999999999775 56889999999999999999999999999877655
No 5
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.5e-24 Score=134.28 Aligned_cols=74 Identities=46% Similarity=0.761 Sum_probs=67.8
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.+...|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4567899999999999999999999999999999999765 6788999999999999999999999999886553
No 6
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.90 E-value=3.1e-24 Score=138.09 Aligned_cols=76 Identities=32% Similarity=0.592 Sum_probs=67.6
Q ss_pred CCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHhCCchhhhhhccc
Q 033253 2 EGNDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD------SAVTAKFQEINEAYAVLSDPDKRLDYDFT 75 (123)
Q Consensus 2 ~~~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (123)
++.......|||+||||+++++.++||+|||+|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..
T Consensus 8 ~~~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 87 (94)
T 1wjz_A 8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87 (94)
T ss_dssp SCCSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHH
T ss_pred cccccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 344566788999999999999999999999999999999998643 45788999999999999999999999976
Q ss_pred CC
Q 033253 76 GI 77 (123)
Q Consensus 76 ~~ 77 (123)
..
T Consensus 88 l~ 89 (94)
T 1wjz_A 88 RS 89 (94)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.90 E-value=4.9e-24 Score=135.92 Aligned_cols=75 Identities=35% Similarity=0.625 Sum_probs=67.9
Q ss_pred CCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcc
Q 033253 4 NDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE 79 (123)
Q Consensus 4 ~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (123)
.......|||+||||++.++.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 11 ~~~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 11 SLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CCCSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred hhccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 344567899999999999999999999999999999999875 678899999999999999999999999987654
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=138.29 Aligned_cols=72 Identities=28% Similarity=0.513 Sum_probs=67.2
Q ss_pred CCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 5 DNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 5 ~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
......|||+||||+++++.++||+|||+|++++|||+++..+.+.+.|+.|++||+||+||.+|..||...
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 456678999999999999999999999999999999999877889999999999999999999999999754
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=135.55 Aligned_cols=73 Identities=41% Similarity=0.718 Sum_probs=66.7
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYE 79 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (123)
.....|||+||||++.++.++||++||+|++++|||+++ .+.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCC-SHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 345689999999999999999999999999999999987 4778999999999999999999999999877544
No 10
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=8e-24 Score=135.85 Aligned_cols=78 Identities=41% Similarity=0.689 Sum_probs=69.6
Q ss_pred CCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 4 NDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 4 ~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
...+...|||+||||++.++.++||++||+|++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+..++.
T Consensus 3 ~~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 3 SGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred CCCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 3455678999999999999999999999999999999998765 46889999999999999999999999998766543
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=6.9e-24 Score=140.26 Aligned_cols=75 Identities=41% Similarity=0.679 Sum_probs=69.4
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
.....|||+||||++.++.++||+|||+|++++|||+++..+++.+.|+.|++||++|+||.+|..||..+..++
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~ 87 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence 445689999999999999999999999999999999998778899999999999999999999999999886554
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=1.1e-23 Score=129.91 Aligned_cols=67 Identities=45% Similarity=0.776 Sum_probs=61.7
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCC
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI 77 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (123)
...|||+||||+++++.++||++|+++++++|||++++. .+.|+.|++||++|+||.+|..||..|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG---AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC---HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH---HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 468999999999999999999999999999999998754 4789999999999999999999998774
No 13
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=3.4e-24 Score=140.32 Aligned_cols=74 Identities=46% Similarity=0.826 Sum_probs=69.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK 82 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (123)
..|||+||||+++++.++||+|||+|++++|||+++..+++.+.|+.|++||++|+||.+|..||..+..++..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 47899999999999999999999999999999998876788999999999999999999999999998777653
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=136.18 Aligned_cols=72 Identities=43% Similarity=0.718 Sum_probs=64.3
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
.|||+||||+++++.++||+|||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~ 74 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT 74 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 5899999999999999999999999999999998765 45889999999999999999999999988766654
No 15
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.88 E-value=3.6e-23 Score=136.61 Aligned_cols=89 Identities=25% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCCccCccccccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC---ChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 5 DNNTQKDYYKILEVDYDA-TDEKIRLNYRKLALKWHPDKHNG---DSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 5 ~~~~~~d~Y~vLgv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
......|||+||||++++ +.++||+|||++++++|||++++ .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 10 ~~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~ 89 (109)
T 2qsa_A 10 LYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD 89 (109)
T ss_dssp STTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTT
T ss_pred HHcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCch
Confidence 445678999999999999 99999999999999999999875 34578999999999999999999999998764332
Q ss_pred cccCHHHHHHHHhhh
Q 033253 81 DKYTLREYLARFKGM 95 (123)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (123)
....+++..|...
T Consensus 90 --~~~~~~~~~~~~~ 102 (109)
T 2qsa_A 90 --QRFYNYYQYYRLR 102 (109)
T ss_dssp --CHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHH
Confidence 2234444444433
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.7e-23 Score=132.40 Aligned_cols=70 Identities=44% Similarity=0.766 Sum_probs=63.5
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccc
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEI 80 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 80 (123)
...|||+||||++.++.++||++||+|++++|||+++.. .+.|+.|++||++|+||.+|..||..+..+.
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 75 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAA 75 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHHHh
Confidence 468999999999999999999999999999999998765 3699999999999999999999998775443
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=141.30 Aligned_cols=76 Identities=33% Similarity=0.615 Sum_probs=69.8
Q ss_pred CCCCCCCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh------HHHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 1 MEGNDNNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS------AVTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 1 ~~~~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
|++......+|||+||||+++++.++||+|||+|++++|||+++..+ .+.+.|+.|++||++|+||.+|..||.
T Consensus 1 mm~~~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~ 80 (155)
T 2l6l_A 1 MMAVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDL 80 (155)
T ss_dssp CCCCCCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHH
T ss_pred CCCcccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 78888889999999999999999999999999999999999987653 367899999999999999999999997
Q ss_pred cC
Q 033253 75 TG 76 (123)
Q Consensus 75 ~~ 76 (123)
.+
T Consensus 81 ~~ 82 (155)
T 2l6l_A 81 QR 82 (155)
T ss_dssp HH
T ss_pred Hc
Confidence 44
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.86 E-value=2.4e-22 Score=144.45 Aligned_cols=72 Identities=39% Similarity=0.661 Sum_probs=67.7
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCcccc
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEID 81 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (123)
+|||+||||+++++.++||+|||++++++|||++++.+++.+.|+.|++||++|+||.+|..||..|..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 73 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE 73 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence 589999999999999999999999999999999987788999999999999999999999999998876654
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-21 Score=124.23 Aligned_cols=62 Identities=29% Similarity=0.387 Sum_probs=57.7
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhh
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 71 (123)
..|||+||||+++++.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 5899999999999999999999999999999999875 6688899999999999999998864
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.82 E-value=6.9e-21 Score=135.16 Aligned_cols=69 Identities=23% Similarity=0.483 Sum_probs=61.6
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 8 TQKDYYKILEVDYDAT--DEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
...|||+||||+++++ .++||++||++++++|||++++.+. +.+.|..|++||+||+||.+|..||...
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 4689999999999887 9999999999999999999877654 6689999999999999999999999743
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.81 E-value=3.5e-21 Score=128.23 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=60.0
Q ss_pred ccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCC
Q 033253 9 QKDYYKILEVDYDATD--EKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI 77 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (123)
..++|+||||++.++. ++||+|||+|++++|||+++. .++|+.|++||+||+||.+|..||..+.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999998 999999999999999999775 3799999999999999999999997664
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.80 E-value=2.4e-20 Score=132.04 Aligned_cols=67 Identities=24% Similarity=0.461 Sum_probs=61.0
Q ss_pred cCccccccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 10 KDYYKILEVDYDA--TDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 10 ~d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
.|||+||||++.+ +.++||++||++++++|||++++.+. +.+.|..|++||+||+||.+|..||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3899999999999 99999999999999999999876543 5578999999999999999999999753
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.80 E-value=2.1e-20 Score=117.05 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=55.9
Q ss_pred ccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 9 QKDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 9 ~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
..++|+||||+++ ++.++||+|||+|++++|||+++. .+.|+.|++||++|+|+.+|..++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3679999999999 999999999999999999999654 479999999999999999999855
No 24
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.79 E-value=4.5e-21 Score=147.84 Aligned_cols=70 Identities=39% Similarity=0.613 Sum_probs=0.0
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
.....|||+||||+++|+.++||+|||+|++++|||+++. +.++++|+.|++||++|+||.+|..||..+
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 3456899999999999999999999999999999999875 578899999999999999999999999873
No 25
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.79 E-value=5.5e-21 Score=135.49 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=58.4
Q ss_pred CccCccccccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCC
Q 033253 8 TQKDYYKILEVDYDAT--DEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGI 77 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (123)
...|+|+||||+++++ .++||+|||++++++|||++++. ++|+.|++||++|+||.+|..||..|.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~----e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC----TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH----HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3478999999999998 69999999999999999997653 789999999999999999999999885
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=3.9e-20 Score=118.00 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=59.1
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHHHHHHHhCCchhhhhh
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD-SAVTAKFQEINEAYAVLSDPDKRLDY 72 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Y 72 (123)
.....++|+||||+++++.++||+|||+|++++|||++++. +.+.+.|+.|++||++|+|...|..+
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34557899999999999999999999999999999998876 35889999999999999998777433
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=131.65 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=60.3
Q ss_pred CccCccccccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 8 TQKDYYKILEVDYD--ATDEKIRLNYRKLALKWHPDKHNGDSA-----VTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
...|||+||||++. ++.++||++||+|++++|||++++.+. +.+.|+.|++||+||+||.+|..||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 46799999999986 799999999999999999999876542 56789999999999999999999985
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.78 E-value=5.8e-20 Score=131.01 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=59.0
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHHHHHHHhCCchhhhhh
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSA---VTAKFQEINEAYAVLSDPDKRLDY 72 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~---~~~~f~~i~~Ay~~L~d~~~R~~Y 72 (123)
.|+|+||||++.++.++||+|||++++++|||++++.+. +.+.|+.|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999876543 789999999999999999999887
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.75 E-value=2.4e-19 Score=115.12 Aligned_cols=56 Identities=27% Similarity=0.403 Sum_probs=51.4
Q ss_pred cCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHHHHHHHhCC
Q 033253 10 KDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDS---AVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 10 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~---~~~~~f~~i~~Ay~~L~d 65 (123)
.++|++|||++.++.++||+|||++++++|||++++.+ .+++.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987654 378899999999999964
No 30
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.74 E-value=1.5e-19 Score=150.76 Aligned_cols=77 Identities=36% Similarity=0.626 Sum_probs=40.8
Q ss_pred CCCccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccCCccccc
Q 033253 6 NNTQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTGIYEIDK 82 (123)
Q Consensus 6 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (123)
.....|||+||||+++|+.++||+|||+|++++|||++++.+.+.++|+.|++||++|+||.+|..||..|..+...
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccccc
Confidence 34568999999999999999999999999999999998777888999999999999999999999999999776653
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.74 E-value=5.1e-19 Score=126.24 Aligned_cols=69 Identities=23% Similarity=0.475 Sum_probs=60.9
Q ss_pred CCCCccCccccc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhcccC
Q 033253 5 DNNTQKDYYKIL------EVDY-DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYDFTG 76 (123)
Q Consensus 5 ~~~~~~d~Y~vL------gv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 76 (123)
......|||+|| |+++ +++.++||++||+|++++|||++++ +.+.|..|++||+||+||.+|..||...
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 445668999999 4665 8999999999999999999999875 5578999999999999999999999854
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.74 E-value=7.8e-19 Score=115.51 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=52.0
Q ss_pred CccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---Ch----HHHHHHHHHHHHHHHhCCch
Q 033253 8 TQKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNG---DS----AVTAKFQEINEAYAVLSDPD 67 (123)
Q Consensus 8 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~----~~~~~f~~i~~Ay~~L~d~~ 67 (123)
...|||+|||++. ++.++||+|||++++++|||+++. .+ .++++|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3479999999996 999999999999999999999763 11 46889999999999999985
No 33
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.9e-19 Score=108.25 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=51.8
Q ss_pred CCccCccccccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhh
Q 033253 7 NTQKDYYKILEVDY-DATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKR 69 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 69 (123)
....++|+||||++ +++.++||++||+|++++|||+++. .+.|+.|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhc
Confidence 34468999999999 7999999999999999999999543 36999999999999987665
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.29 E-value=2e-12 Score=98.62 Aligned_cols=66 Identities=45% Similarity=0.782 Sum_probs=56.0
Q ss_pred ccCccccccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHHHHHHHhCCchhhhhhcc
Q 033253 9 QKDYYKILEVDYDATDEKIRLNYRKLALKWHPDKHNGD---SAVTAKFQEINEAYAVLSDPDKRLDYDF 74 (123)
Q Consensus 9 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~ 74 (123)
..++|.+||+.+.++.++|+++|+++++++|||+.+.. ..+++.|+.|.+||++|+||.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 45899999999999999999999999999999998754 2478899999999999999999999995
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.8e-11 Score=72.71 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=44.5
Q ss_pred cCccccccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCC
Q 033253 10 KDYYKILEVDYD---ATDEKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSD 65 (123)
Q Consensus 10 ~d~Y~vLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d 65 (123)
..-|.||||++. ++.++|+++||+|+..+|||+.++ + .....|++|.++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-~---yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS-F---YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC-H---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHHHHH
Confidence 456889999999 999999999999999999999544 2 566789999999853
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.02 E-value=0.011 Score=48.35 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=38.3
Q ss_pred CCccCccccccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Q 033253 7 NTQKDYYKILEVDYDATD--EKIRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAV 62 (123)
Q Consensus 7 ~~~~d~Y~vLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~ 62 (123)
.+.++||.+||++..... .+|+++||++++..+++ .+++..|..|..|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 345669999999777655 78999999999966554 3789999998876
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=41.69 E-value=16 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHhCCCC
Q 033253 12 YYKILEVDYDATDEKIRLNYRKLALKWHPDK 42 (123)
Q Consensus 12 ~Y~vLgv~~~a~~~~Ik~ayr~l~~~~hPD~ 42 (123)
++..|-|....+.++++++-..+..+.||+=
T Consensus 34 ~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 34 LLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 3667778888999999999999999999983
No 38
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=41.65 E-value=31 Score=19.49 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+... .+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~~-----~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIKV-----TEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCCH-----HHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCc---hHHHH
Confidence 45566777778998632 4778889999999987 66665
No 39
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=40.39 E-value=43 Score=18.89 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.... +..+.|.+.|..|++. .|..|-
T Consensus 16 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~-eK~~y~ 55 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-----EISKQLGYQWKMLTEA-EKWPFF 55 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-----HHHHHHHHHHHTCCHH-HHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-----HHHHHHHhHHHhCCHH-HHHHHH
Confidence 345666677779987443 5778899999999754 445443
No 40
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=39.47 E-value=24 Score=19.63 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~e-K~~y~ 53 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAE-KRPFV 53 (71)
T ss_dssp HHHHHHHHHTTCTTSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 4566777777888864 2367788999999998554 44443
No 41
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=37.50 E-value=50 Score=19.00 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.... +..+.|.+.|.-|++.+ |..|.
T Consensus 19 ~~~~r~~~~~~~p~~~~~-----eisk~lg~~Wk~ls~~e-K~~y~ 58 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR-----GATKILADWWAVLDPKE-KQKYT 58 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT-----HHHHHHHHHHHTCCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCCHH-----HHHHHHHHHHhhCCHHH-HHHHH
Confidence 456677777789986443 67788999999998554 44443
No 42
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.15 E-value=64 Score=18.14 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHH---HHHHHHhCC-ch-hhhhhcc
Q 033253 25 EKIRLNYRKLALKWHPDKHNGDSAVTAKFQEI---NEAYAVLSD-PD-KRLDYDF 74 (123)
Q Consensus 25 ~~Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i---~~Ay~~L~d-~~-~R~~Yd~ 74 (123)
+|..++|.+|.+...-|..- .-++..+.| ..-|.+|.| |. ++..|+.
T Consensus 3 eEae~aF~~lL~~~~V~s~w---sweqamr~i~i~DPrY~al~d~~~eRK~~Fe~ 54 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTW---SFSRIISELGTRDPRYWMVDDDPLWKKEMFEK 54 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSC---CHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCC---cHHHHHHHhccCCCccccccCCHHHHHHHHHH
Confidence 56789999999888665421 123445555 458999997 66 4456653
No 43
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=34.01 E-value=40 Score=19.44 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.+ |..|.
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~e-K~~y~ 57 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-----NAELSKMLGKSWKALTLAE-KRPFV 57 (83)
T ss_dssp HHHHHHHHHHHCSSSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHH-HHHHH
Confidence 4566777788899864 2367888999999998554 44443
No 44
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=33.95 E-value=25 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 033253 21 DATDEKIRLNYRKLALKWHPDK 42 (123)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~ 42 (123)
+-+..+|+.+|+.|++.+|--+
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999887554
No 45
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=32.25 E-value=50 Score=19.56 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+..|..++.-||+.. ..+..+.|.+.|.-|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~Y~~ 59 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-----FPEITKMLGAEWSKLQPAEKQRYLD 59 (92)
T ss_dssp HHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556667777899863 2467888999999998766554444
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=31.32 E-value=39 Score=19.68 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.0
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKLA 35 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l~ 35 (123)
|=|||++++.++|++.|.+..
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998764
No 47
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=31.25 E-value=61 Score=18.27 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+..|..++.-||+.. ..+..+.|.+.|.-|++.++ ..|.
T Consensus 18 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~eK-~~y~ 57 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-----IGDVAKKLGEMWNNTAADDK-QPYE 57 (77)
T ss_dssp HHHHHHHHHHHCTTCC-----HHHHHHHHHHHHHHSCGGGS-HHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHH-HHHH
Confidence 3455666677789853 24678899999999986554 4443
No 48
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=30.31 E-value=41 Score=19.35 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.. ..+..+.|.+.|.-|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-----NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSCC-----HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 3455666677788753 2367788999999998765544434
No 49
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.41 E-value=89 Score=18.28 Aligned_cols=53 Identities=6% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHhCCc-hhhhhhc
Q 033253 20 YDATDEKIRLNYRKLALKWHPDKHNGDS--AVTAKFQEINEAYAVLSDP-DKRLDYD 73 (123)
Q Consensus 20 ~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--~~~~~f~~i~~Ay~~L~d~-~~R~~Yd 73 (123)
...-...++.+|+.+.+...|....... .+...|.... +|..+.+. .++.+|+
T Consensus 4 ~~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFe 59 (77)
T 2cqn_A 4 GSSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFK 59 (77)
T ss_dssp CCCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHH
Confidence 3445778899999999988787655432 3444444444 78888664 4445555
No 50
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=28.08 E-value=90 Score=18.79 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+..|..++.-||+... .+.-+.|.+.|.-|++.++....+
T Consensus 22 ~~~~r~~ik~~~P~~~~-----~eisk~lg~~Wk~ls~eeK~~Y~~ 62 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMSN-----LDLTKILSKKYKELPEKKKMKYIQ 62 (99)
T ss_dssp HHHHHHHHHTTCTTSCS-----HHHHHHHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34556666777888642 367888999999999766554444
No 51
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=26.92 E-value=85 Score=17.26 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhh
Q 033253 29 LNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71 (123)
Q Consensus 29 ~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 71 (123)
+..|...+.-||+...+ ..+..+.|.+.|..|++.++...
T Consensus 14 ~~~r~~~~~~~p~~~~~---~~eisk~lg~~Wk~ls~~eK~~y 53 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKF 53 (71)
T ss_dssp HHHHHHHHHHCTTCCCC---HHHHHHHHHHHHHTCCTTTSHHH
T ss_pred HHHHHHHHHHCCCCCCc---HHHHHHHHHHHHhhCCHHHHHHH
Confidence 34455566779986421 23678889999999986655443
No 52
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.83 E-value=45 Score=19.75 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhh
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLD 71 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 71 (123)
.+..|..++.-||+.. ..+..+.|.+.|.-|++.++...
T Consensus 32 ~~~~r~~~k~~~P~~~-----~~eisk~lg~~Wk~ls~eeK~~Y 70 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS-----ESELTRLLARMWNDLSEKKKAKY 70 (90)
T ss_dssp HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHhCCHHHHHHH
Confidence 4456667777789853 23677889999999986544433
No 53
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=24.67 E-value=58 Score=18.45 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.. ..+..+.|.+.|..|++. .|..|.
T Consensus 14 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~~-eK~~y~ 53 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-----NAEISKRLGKRWKLLKDS-DKIPFI 53 (79)
T ss_dssp HHHHHHHHHTTSTTSC-----HHHHHHHHHHHHHHSCHH-HHHHHH
T ss_pred HHHHHHHHHHHCcCCC-----HHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 4556667777788753 236788899999999854 444444
No 54
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=24.34 E-value=66 Score=17.41 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.1
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKL 34 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l 34 (123)
|=|||+.++.++|++.|.+.
T Consensus 4 v~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 4 VGGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp ESCCCSSCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999999876
No 55
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=23.90 E-value=60 Score=18.99 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+.+|..++.-||+.. ..+.-+.|.+.|.-|++.+ |..|-
T Consensus 29 ~~~~r~~~~~~~P~~~-----~~eisk~lg~~Wk~ls~ee-K~~y~ 68 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-----NRAISVILGDRWKKMKNEE-RRMYT 68 (87)
T ss_dssp HHHTHHHHHHHCTTSC-----HHHHHHHHHHHHHHSCHHH-HHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhhCCHHH-HHHHH
Confidence 4556677777889853 2367788999999998554 44443
No 56
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.53 E-value=51 Score=19.54 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
.+..|..++.-||+.. ..+..+.|.+.|.-|++.++....+
T Consensus 19 ~~~~r~~~~~~~p~~~-----~~eisk~lg~~Wk~ls~eeK~~y~~ 59 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-----LEDATLQIEELWKTLSEEEKLKYEE 59 (92)
T ss_dssp HHHHHHHHHHHCCSSC-----HHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455666777799863 2377888999999998655444433
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=29.02 E-value=17 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 033253 21 DATDEKIRLNYRKLALKWHPDK 42 (123)
Q Consensus 21 ~a~~~~Ik~ayr~l~~~~hPD~ 42 (123)
+-++.+|+.+|++|++.+|-.+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4566777777777777776544
No 58
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.19 E-value=42 Score=19.74 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 28 RLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 28 k~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
...+|...+.-||+.. ...+.-+.|.+.|..|++.++....+
T Consensus 17 ~~e~R~~ik~~~P~~~----~~~eisK~lge~Wk~ls~eeK~~y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS----DEADIIKEGMIRFRVLSTEERKVWAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCC----SHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556777788899973 12477888999999998655544433
No 59
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.55 E-value=61 Score=19.51 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.8
Q ss_pred cccCCCCCCHHHHHHHHHHHH
Q 033253 15 ILEVDYDATDEKIRLNYRKLA 35 (123)
Q Consensus 15 vLgv~~~a~~~~Ik~ayr~l~ 35 (123)
++-|++.|+..+||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988773
No 60
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=20.05 E-value=59 Score=19.93 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHhCCchhhhhhc
Q 033253 27 IRLNYRKLALKWHPDKHNGDSAVTAKFQEINEAYAVLSDPDKRLDYD 73 (123)
Q Consensus 27 Ik~ayr~l~~~~hPD~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd 73 (123)
-.+.+|..++.-||+... .+..+.|.+.|..|++.+ |..|.
T Consensus 40 F~~~~r~~~k~~~P~~~~-----~eisk~lg~~Wk~ls~ee-K~~Y~ 80 (106)
T 4euw_A 40 WAQAARRKLADQYPHLHN-----AELSKTLGKLWRLLNESE-KRPFV 80 (106)
T ss_dssp HHHHHHHHHHHHCTTSCH-----HHHHHHHHHHHTTCCHHH-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCH-----HHHHHHHHHHHHcCCHHH-HHHHH
Confidence 356677777888898632 367788999999998554 44443
Done!