Query 033254
Match_columns 123
No_of_seqs 102 out of 385
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_A Prefoldin; archaeal pro 99.9 1.2E-23 4.3E-28 145.6 8.7 94 12-105 1-94 (107)
2 2zqm_A Prefoldin beta subunit 99.9 3.1E-23 1.1E-27 145.3 10.0 96 9-104 3-98 (117)
3 2zdi_C Prefoldin subunit alpha 99.3 1.4E-12 4.6E-17 95.8 6.8 98 8-105 5-127 (151)
4 1fxk_C Protein (prefoldin); ar 99.0 1.1E-09 3.9E-14 78.2 8.9 92 13-104 2-116 (133)
5 3aei_A Prefoldin beta subunit 97.2 0.0028 9.7E-08 43.2 8.5 75 23-97 8-82 (99)
6 1l8d_A DNA double-strand break 95.0 0.49 1.7E-05 31.9 10.6 85 14-101 5-89 (112)
7 1fxk_A Prefoldin; archaeal pro 91.4 1.5 5E-05 29.0 8.1 102 8-109 4-105 (107)
8 2zqm_A Prefoldin beta subunit 91.3 1.6 5.5E-05 29.2 8.3 105 6-110 7-111 (117)
9 3na7_A HP0958; flagellar bioge 78.8 20 0.00067 27.4 9.7 36 72-107 146-181 (256)
10 1xaw_A Occludin; coiled-coil, 78.2 17 0.00058 26.3 10.7 75 12-101 52-134 (140)
11 3uul_A Utrophin; spectrin repe 77.8 6.5 0.00022 25.3 5.8 69 38-106 38-108 (118)
12 3uun_A Dystrophin; triple heli 77.3 12 0.0004 24.0 7.0 71 36-106 36-108 (119)
13 3ol1_A Vimentin; structural ge 74.1 13 0.00044 25.7 6.8 89 6-97 10-104 (119)
14 3nmd_A CGMP dependent protein 74.0 15 0.00053 23.8 7.9 45 10-54 24-68 (72)
15 3tnu_B Keratin, type II cytosk 73.8 19 0.00066 24.8 11.0 76 12-112 36-111 (129)
16 2dfs_A Myosin-5A; myosin-V, in 72.3 36 0.0012 31.6 11.0 33 71-103 1011-1043(1080)
17 2pnv_A Small conductance calci 67.2 9.6 0.00033 22.4 4.1 27 75-101 8-34 (43)
18 2fxo_A Myosin heavy chain, car 66.2 30 0.001 23.9 12.1 25 77-101 98-122 (129)
19 2kes_A Synphilin-1; synphillin 66.2 10 0.00034 22.7 4.0 33 1-33 7-39 (48)
20 1wt6_A Myotonin-protein kinase 66.0 26 0.00089 23.2 7.3 46 7-52 12-57 (81)
21 1aq5_A Matrilin-1, CMP, cartil 64.5 11 0.00037 22.7 4.0 31 69-99 16-46 (47)
22 1ez3_A Syntaxin-1A; three heli 61.7 32 0.0011 22.8 10.0 72 14-100 7-78 (127)
23 3qne_A Seryl-tRNA synthetase, 57.4 89 0.003 26.6 10.2 82 18-114 32-113 (485)
24 3na7_A HP0958; flagellar bioge 56.7 62 0.0021 24.5 9.4 48 6-53 26-73 (256)
25 2v4h_A NF-kappa-B essential mo 56.5 48 0.0016 23.1 7.2 84 13-101 25-108 (110)
26 3kqg_A Langerin, C-type lectin 55.6 16 0.00053 25.5 4.3 60 18-83 15-79 (182)
27 1rtm_1 Mannose-binding protein 55.5 25 0.00086 23.6 5.3 56 25-83 3-58 (149)
28 3tnu_A Keratin, type I cytoske 51.9 56 0.0019 22.5 10.1 75 13-112 39-113 (131)
29 1deb_A APC protein, adenomatou 51.3 39 0.0014 20.6 6.6 46 8-53 6-51 (54)
30 3ibp_A Chromosome partition pr 49.8 58 0.002 26.4 7.2 90 8-97 6-104 (302)
31 3hnw_A Uncharacterized protein 49.7 48 0.0016 23.5 6.1 22 22-43 113-134 (138)
32 2yy0_A C-MYC-binding protein; 48.9 28 0.00094 21.0 4.0 32 12-43 19-50 (53)
33 3t97_C Nuclear pore glycoprote 48.6 47 0.0016 20.8 5.8 43 12-54 12-54 (64)
34 1m1j_B Fibrinogen beta chain; 48.5 1.3E+02 0.0043 25.6 12.3 31 71-101 163-193 (464)
35 3ghg_A Fibrinogen alpha chain; 47.8 40 0.0014 29.5 6.3 36 7-42 119-154 (562)
36 2dq0_A Seryl-tRNA synthetase; 46.3 1.3E+02 0.0043 25.1 9.9 82 18-114 30-111 (455)
37 2pih_A Protein YMCA; regulate 45.6 61 0.0021 22.9 6.2 43 12-54 40-84 (151)
38 3mq9_A Bone marrow stromal ant 43.3 1.3E+02 0.0043 24.2 12.6 80 6-103 374-463 (471)
39 2yny_A General control protein 42.8 37 0.0013 23.5 4.4 86 9-102 3-95 (106)
40 2wt7_A Proto-oncogene protein 41.6 58 0.002 19.8 6.0 29 13-41 31-59 (63)
41 2dq3_A Seryl-tRNA synthetase; 40.5 1.4E+02 0.0047 24.5 8.4 82 18-114 29-110 (425)
42 1ik9_A DNA repair protein XRCC 40.3 1.2E+02 0.004 22.9 7.6 32 22-53 142-173 (213)
43 1buu_A Protein (mannose-bindin 40.3 62 0.0021 22.3 5.5 24 57-83 54-77 (168)
44 1gmj_A ATPase inhibitor; coile 38.8 59 0.002 21.6 4.8 29 26-54 51-79 (84)
45 2w83_C C-JUN-amino-terminal ki 38.2 83 0.0028 20.6 6.5 70 6-94 3-76 (77)
46 3ol1_A Vimentin; structural ge 36.1 1E+02 0.0035 21.0 10.5 72 14-100 43-118 (119)
47 1go4_E MAD1 (mitotic arrest de 35.2 1E+02 0.0036 20.9 9.2 75 20-99 13-91 (100)
48 2ap3_A Conserved hypothetical 35.0 38 0.0013 25.7 3.8 28 70-97 64-91 (199)
49 1deq_A Fibrinogen (alpha chain 34.4 51 0.0017 27.6 4.7 44 69-112 53-96 (390)
50 3nmd_A CGMP dependent protein 34.1 94 0.0032 20.0 6.1 41 14-54 21-61 (72)
51 1ik9_A DNA repair protein XRCC 33.9 1.1E+02 0.0037 23.1 6.2 39 11-49 138-176 (213)
52 2lw1_A ABC transporter ATP-bin 33.1 43 0.0015 21.6 3.4 24 78-101 24-47 (89)
53 3oja_B Anopheles plasmodium-re 32.1 1.5E+02 0.0051 24.3 7.3 29 76-104 558-586 (597)
54 1x79_B RAB GTPase binding effe 32.1 1.3E+02 0.0043 20.9 5.8 34 12-45 6-39 (112)
55 2qlz_A Transcription factor PF 30.9 1.7E+02 0.0058 22.0 8.8 81 13-97 117-204 (232)
56 1s35_A Beta-I spectrin, spectr 30.6 73 0.0025 22.3 4.6 21 11-31 32-52 (214)
57 3efg_A Protein SLYX homolog; x 30.6 1.1E+02 0.0037 19.6 5.3 36 71-106 9-44 (78)
58 3ni0_A Bone marrow stromal ant 30.1 1.3E+02 0.0045 20.5 5.7 27 15-41 63-89 (99)
59 3lss_A Seryl-tRNA synthetase; 29.3 2.6E+02 0.0089 23.6 9.2 34 78-114 113-146 (484)
60 1s94_A S-syntaxin; three helix 28.8 1.5E+02 0.0053 20.8 8.2 71 14-99 38-108 (180)
61 2yny_A General control protein 28.5 52 0.0018 22.8 3.3 41 59-101 61-101 (106)
62 3mq7_A Bone marrow stromal ant 28.5 1.6E+02 0.0053 20.8 6.9 34 20-53 72-105 (121)
63 3lbx_A Spectrin alpha chain, e 27.5 1.5E+02 0.0053 20.4 6.0 25 78-102 129-153 (161)
64 1t3j_A Mitofusin 1; coiled coi 27.3 1.4E+02 0.0049 20.1 5.3 31 71-101 42-72 (96)
65 1dn1_B Syntaxin 1A, syntaxin b 26.8 1.4E+02 0.0049 22.7 5.9 25 9-33 122-146 (267)
66 1zme_C Proline utilization tra 25.4 49 0.0017 19.5 2.4 26 76-101 44-69 (70)
67 3e98_A GAF domain of unknown f 25.2 2.2E+02 0.0074 21.6 6.7 56 20-84 73-128 (252)
68 4abm_A Charged multivesicular 25.0 1.4E+02 0.0048 19.1 5.0 34 73-106 3-36 (79)
69 1pwb_A SP-D, PSP-D, pulmonary 24.8 81 0.0028 21.8 3.9 23 58-83 63-85 (177)
70 3dlq_I Interleukin-22; cytokin 24.5 35 0.0012 24.7 1.9 56 11-68 84-139 (151)
71 2w6b_A RHO guanine nucleotide 24.3 1.3E+02 0.0045 18.5 5.4 36 8-43 13-48 (56)
72 1lwu_C Fibrinogen gamma chain; 23.9 1.6E+02 0.0056 23.6 5.9 24 20-43 27-50 (323)
73 2l5g_B Putative uncharacterize 23.7 1.2E+02 0.004 17.7 4.8 28 26-53 9-36 (42)
74 1fxk_C Protein (prefoldin); ar 23.6 1.7E+02 0.0058 19.6 6.2 39 7-45 90-128 (133)
75 2oeq_A Protein of unknown func 23.4 1.4E+02 0.0046 20.0 4.7 22 12-33 39-60 (122)
76 3kin_B Kinesin heavy chain; mo 22.9 1.8E+02 0.0061 19.7 5.2 31 15-45 85-115 (117)
77 3iyn_Q Protein IX, PIX, hexon- 22.9 2.1E+02 0.0073 20.4 6.0 35 8-42 93-128 (140)
78 2w83_C C-JUN-amino-terminal ki 22.6 1.6E+02 0.0054 19.2 4.6 35 12-46 37-71 (77)
79 1l8d_A DNA double-strand break 22.0 1.7E+02 0.0057 18.9 6.3 43 6-48 4-46 (112)
80 2w6a_A ARF GTPase-activating p 21.7 1.6E+02 0.0054 18.5 5.4 35 7-41 22-56 (63)
81 3oja_B Anopheles plasmodium-re 21.5 3.3E+02 0.011 22.2 11.2 27 76-102 544-570 (597)
82 1szi_A TIP47, mannose-6-phosph 21.3 1.6E+02 0.0055 22.9 5.2 61 5-68 160-235 (247)
83 3rrk_A V-type ATPase 116 kDa s 21.1 2.6E+02 0.0088 21.6 6.5 62 7-68 228-293 (357)
84 2bez_C E2 glycoprotein; coiled 20.5 1.9E+02 0.0064 18.9 6.6 44 5-48 16-59 (77)
85 3kqg_A Langerin, C-type lectin 20.5 2E+02 0.0067 19.6 5.2 24 13-36 17-40 (182)
86 1jcd_A Major outer membrane li 20.2 1.5E+02 0.0052 17.7 7.4 32 3-34 2-33 (52)
87 1lwu_B Fibrinogen beta chain; 20.1 2.4E+02 0.0083 22.5 6.2 29 20-48 29-57 (323)
No 1
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.90 E-value=1.2e-23 Score=145.56 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 91 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~e 91 (123)
|++|+.+++|++++++++.+.++++.++++++||+.|++||+.+++|++|||+||||||++|+++|.++|++|+++|+.+
T Consensus 1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~ 80 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHH
Q 033254 92 LYVSSYLVNWRFFA 105 (123)
Q Consensus 92 ik~l~kqi~~~~~~ 105 (123)
++++.+++..-.-.
T Consensus 81 i~~le~~~~~~~~~ 94 (107)
T 1fxk_A 81 EKTIERQEERVMKK 94 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765433
No 2
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.89 E-value=3.1e-23 Score=145.33 Aligned_cols=96 Identities=22% Similarity=0.283 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHH
Q 033254 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYI 88 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I 88 (123)
++|++.|+.+++|++++++++.+.++++.++++++||+.|++||+.+++|++||++||||||++|+++|.++|++|+++|
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHH
Q 033254 89 SAELYVSSYLVNWRFF 104 (123)
Q Consensus 89 ~~eik~l~kqi~~~~~ 104 (123)
+.+++++.+++..-.-
T Consensus 83 e~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 83 EVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876443
No 3
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.35 E-value=1.4e-12 Score=95.80 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=91.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHhcCcC-CCCchhhhhc-----------------
Q 033254 8 RELQRELETKANDLSKLQKDIGKNHQVRKKY---TIQLGENELVLKELGLLN-EGANVYKLIG----------------- 66 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qL---esql~E~~~VleEL~~l~-~d~kvYKlVG----------------- 66 (123)
+++|++++.+...+++++.+++.+.+++++| .+++.|++.++++|+.++ ++..+|..+|
T Consensus 5 ~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v 84 (151)
T 2zdi_C 5 AQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIV 84 (151)
T ss_dssp CSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEE
Confidence 4679999999999999999999999999999 999999999999999999 8889999966
Q ss_pred ----cchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHH
Q 033254 67 ----PVLVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFA 105 (123)
Q Consensus 67 ----~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~ 105 (123)
|++|+.|.+||+..+++|+++++..++.+.+++..---.
T Consensus 85 ~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 85 SVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKR 127 (151)
T ss_dssp EEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999988764433
No 4
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.03 E-value=1.1e-09 Score=78.17 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcC--CCC--------------------chhhhhc-cch
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLN--EGA--------------------NVYKLIG-PVL 69 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~--~d~--------------------kvYKlVG-~VL 69 (123)
+++++...+++++.+++.+.++++++.+.+.|.+.+++.|+.++ ++. +||-.|| +++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence 46788999999999999999999999999999999999999987 343 3888899 799
Q ss_pred hhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033254 70 VKQDLAEANANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 70 Vkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
|+.+.+||+.-+++|++.++..++.+.+++..---
T Consensus 82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~ 116 (133)
T 1fxk_C 82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITD 116 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875433
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=97.19 E-value=0.0028 Score=43.21 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033254 23 KLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 23 ~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
.|+=+++++-.-|+-++-...|.+-+---+..+..++++|+.....||+-++|||+.-++.-.=..+-+|+++.+
T Consensus 8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~ 82 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKK 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677778888888888888988888888999999999999999999999999999988755455566666644
No 6
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.98 E-value=0.49 Score=31.86 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033254 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+...-.++.+++.++..+...+..+.+++.+.+.++.+++.. +.+|- +-|..+=+....+.+.....++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CP-vCgs~l~~~~~~~~i~~~~~~l~~l~~~i~ 81 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCP-VCGRELTDEHREELLSKYHLDLNNSKNTLA 81 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECT-TTCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCC-CCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555778888889999999999999999999999999873 33332 224444444344555555666666665555
Q ss_pred HHHhhhhH
Q 033254 94 VSSYLVNW 101 (123)
Q Consensus 94 ~l~kqi~~ 101 (123)
.+..++..
T Consensus 82 ~l~~~i~~ 89 (112)
T 1l8d_A 82 KLIDRKSE 89 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=91.35 E-value=1.5 Score=29.02 Aligned_cols=102 Identities=8% Similarity=-0.021 Sum_probs=68.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHH
Q 033254 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEY 87 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~ 87 (123)
+..-.+++....+++.+..+++.+..++..++.=+.|.+.+-+.=.--..=+.||=...--=+...+++-+..++++++.
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~ 83 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888999999999999999999999999988877653111122233443333333455666777777777777
Q ss_pred HHHHHHHHHhhhhHHHHHHHHh
Q 033254 88 ISAELYVSSYLVNWRFFAIFLL 109 (123)
Q Consensus 88 I~~eik~l~kqi~~~~~~~~~~ 109 (123)
++..++.+.+.+..-.-.+..+
T Consensus 84 le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 84 IERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776655555443
No 8
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=91.31 E-value=1.6 Score=29.22 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=70.1
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhH
Q 033254 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRI 85 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRl 85 (123)
..+.+-.+++....+++.+..+++.+..++..++.=+.|.+.+-+.=.-...=..||=..---=+...+++-+..+++++
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i 86 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 45566678899999999999999999999999999999988776532212222344443333334455666666666666
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhh
Q 033254 86 EYISAELYVSSYLVNWRFFAIFLLF 110 (123)
Q Consensus 86 E~I~~eik~l~kqi~~~~~~~~~~~ 110 (123)
+.++..++.+.+.++.-.-.+..++
T Consensus 87 ~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 87 NALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555554443
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.78 E-value=20 Score=27.36 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHH
Q 033254 72 QDLAEANANVRKRIEYISAELYVSSYLVNWRFFAIF 107 (123)
Q Consensus 72 q~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~ 107 (123)
...++....+++.++.+..+.+.+...|+...+..|
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Y 181 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFY 181 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 355666667777777777777777778887777665
No 10
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=78.19 E-value=17 Score=26.35 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHH--------HHHHHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEA--------NANVRK 83 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea--------~~~l~k 83 (123)
...+....+|..|+.+++.+..+..+|++++.. +++++.=|+-| -+..... -.+-++
T Consensus 52 ~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~----------l~~~s~e~~~i-----~~EY~r~k~~K~dp~y~ekK~ 116 (140)
T 1xaw_A 52 RNFDTGLQEYKSLQSVLDEINKELSRLDKELDD----------YREESEEYMAA-----ADEYNRLKQVKGSADYKSKKN 116 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------SCTTSHHHHHH-----HHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCHHHHHH-----HHHHHHHHHhcCCcHHHHHHH
Confidence 457888999999999999999999999988775 35566666633 1111111 123344
Q ss_pred hHHHHHHHHHHHHhhhhH
Q 033254 84 RIEYISAELYVSSYLVNW 101 (123)
Q Consensus 84 RlE~I~~eik~l~kqi~~ 101 (123)
|-++|..-|.-+++.|.+
T Consensus 117 Rc~yL~~KLsHIK~lI~~ 134 (140)
T 1xaw_A 117 HCKQLKSKLSHIKKMVGD 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 778888888888888765
No 11
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=77.80 E-value=6.5 Score=25.33 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhcc--HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033254 38 YTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD--LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 38 Lesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~--~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+..++.+|+....||..-.+.=.-..-.|.-|+... -.+-...|..+++.+..+-..+.....++.-..
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433322222223355555432 244556788888888888888888887776543
No 12
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=77.29 E-value=12 Score=23.97 Aligned_cols=71 Identities=8% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhcc--HHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033254 36 KKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQD--LAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 36 ~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~--~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
..+..++.+|+....+|..-.+.-.-..-.|.-|+... -.+..+.|..|++.+..+-..+.....++.-..
T Consensus 36 ~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (119)
T 3uun_A 36 EVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544333222333455565542 345567888999999988888888888876554
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.13 E-value=13 Score=25.66 Aligned_cols=89 Identities=10% Similarity=0.127 Sum_probs=48.0
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCC-chhhhhc--cchhhccHHHH---HH
Q 033254 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGA-NVYKLIG--PVLVKQDLAEA---NA 79 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~-kvYKlVG--~VLVkq~~~Ea---~~ 79 (123)
.|+++.+-.+. .+..|+.++..+...+.+++.++.-...+.+++..=-++. ..-..+. -+..+++++++ +.
T Consensus 10 ~~~~~~~~ye~---~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~ 86 (119)
T 3ol1_A 10 HMSRLGDLYEE---EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARL 86 (119)
T ss_dssp ---CCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHH
Confidence 34444444443 3457778888888888888888888777777775421111 0001111 12234445543 34
Q ss_pred HHHHhHHHHHHHHHHHHh
Q 033254 80 NVRKRIEYISAELYVSSY 97 (123)
Q Consensus 80 ~l~kRlE~I~~eik~l~k 97 (123)
+++.+++.+..+|.-+++
T Consensus 87 dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 87 DLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666655544
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.97 E-value=15 Score=23.80 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033254 10 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 10 l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
++..++....++++....+..+....++.+.++.+....++-+..
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666667777777777777777777777776666665543
No 15
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.81 E-value=19 Score=24.84 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 91 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~e 91 (123)
.++.+.-..+|.|+-+++.+-.++..|+..+.|.+. ..+-........+..++.+
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~-------------------------~~~~~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ-------------------------RGELALKDARNKLAELEEA 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHh
Confidence 445566666777888888888888888877776543 2233445566666667777
Q ss_pred HHHHHhhhhHHHHHHHHhhcc
Q 033254 92 LYVSSYLVNWRFFAIFLLFNI 112 (123)
Q Consensus 92 ik~l~kqi~~~~~~~~~~~~~ 112 (123)
+..+...|..+.----.|+||
T Consensus 91 L~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 91 LQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777766666655444456655
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.30 E-value=36 Score=31.59 Aligned_cols=33 Identities=0% Similarity=-0.190 Sum_probs=23.2
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033254 71 KQDLAEANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
+....+...++.+++..++++...|..|+++--
T Consensus 1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556777888888888888888777644
No 17
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=67.17 E-value=9.6 Score=22.39 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=17.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 75 AEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 75 ~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
-|.+.++..|-|.++++|.+++..+++
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~ 34 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLET 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 355666777777777777776666554
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.22 E-value=30 Score=23.95 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 77 ANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 77 a~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
....+...+.-+..++..+.++|.+
T Consensus 98 ~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455666666666654
No 19
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=66.18 E-value=10 Score=22.68 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=23.4
Q ss_pred CChHHHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 1 MGSAAALRELQRELETKANDLSKLQKDIGKNHQ 33 (123)
Q Consensus 1 ms~~~~~~~l~~~~q~~~~~~q~lQ~~lq~l~~ 33 (123)
||.|+..-.+-+++.++..+-=.||.++|.+..
T Consensus 7 mslasqvvkltkql~eqt~~rv~lq~qlq~lle 39 (48)
T 2kes_A 7 MSLASQVVKLTKQLKEQTVERVTLQNQLQQFLE 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677776666777777777777777777776643
No 20
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.02 E-value=26 Score=23.24 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=38.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033254 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKEL 52 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL 52 (123)
.-+++..++..+..=|.+++++.++-..-..++++|+|.+.--.+|
T Consensus 12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889999999999999999999999999888888777666
No 21
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=64.48 E-value=11 Score=22.70 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=26.5
Q ss_pred hhhccHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 033254 69 LVKQDLAEANANVRKRIEYISAELYVSSYLV 99 (123)
Q Consensus 69 LVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi 99 (123)
-+.....+++..|+.|++.+..++..+++++
T Consensus 16 ~FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 16 KFQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456678899999999999999999998876
No 22
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=61.67 E-value=32 Score=22.82 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033254 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+..-+.+.+.++..+..+.....+|.....++ |....++. -+++..+.....+..+-..|...|+
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~------L~~~~~~~---------~~~~~l~~l~~~i~~~a~~ik~~Lk 71 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI------LASPNPDE---------KTKEELEELMSDIKKTANKVRSKLK 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCSSCCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCccH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888877776655544 23323332 2678889999999999999999999
Q ss_pred HHHhhhh
Q 033254 94 VSSYLVN 100 (123)
Q Consensus 94 ~l~kqi~ 100 (123)
.+++...
T Consensus 72 ~l~~~~~ 78 (127)
T 1ez3_A 72 SIEQSIE 78 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
No 23
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=57.45 E-value=89 Score=26.55 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033254 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-++...+..+..+|.++.|+...-+..+++-.+++ ...-+-...|++++..++.+++.++.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~------------~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA------------KDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444444322222 12223355677788888888888888
Q ss_pred hhhHHHHHHHHhhcccc
Q 033254 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
++.... ..+-||-|
T Consensus 100 ~~~~~l---~~iPN~~~ 113 (485)
T 3qne_A 100 NLRSKI---NQVGNIVH 113 (485)
T ss_dssp HHHHHH---TTSCCCCC
T ss_pred HHHHHH---HhCCCCCC
Confidence 777543 44455554
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.73 E-value=62 Score=24.49 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=31.5
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033254 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
....+|.+++..-.++..++..+..+......++.++...+.-++++.
T Consensus 26 ~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 26 LIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777776666666666555555443
No 25
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=56.53 E-value=48 Score=23.13 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHH
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~ei 92 (123)
++..+..++....+.+..-...+..+...+.-.+..++++.-|..-..||+- ....+ -.+...+..+++.+...+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~--DF~aE---RadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKA--DFQAE---RHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHccc---hhhHHHHHhHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666677762 22222 246777888899999999
Q ss_pred HHHHhhhhH
Q 033254 93 YVSSYLVNW 101 (123)
Q Consensus 93 k~l~kqi~~ 101 (123)
..+.+|+++
T Consensus 100 ~~Lq~q~~~ 108 (110)
T 2v4h_A 100 EQLQREFNK 108 (110)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999888764
No 26
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=55.60 E-value=16 Score=25.47 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC-----CCchhhhhccchhhccHHHHHHHHHH
Q 033254 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE-----GANVYKLIGPVLVKQDLAEANANVRK 83 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~-----d~kvYKlVG~VLVkq~~~Ea~~~l~k 83 (123)
+.....|+..++.+..+...+...+.+....+. .-++ +.+||+++. .+.+-.+|...=..
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~---~Cp~gw~~~~~~CY~~~~---~~~tw~~A~~~C~~ 79 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSKLLKRQNDILQ---VVSQGWKYFKGNFYYFSL---IPKTWYSAEQFCVS 79 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTCEEETTEEEEECS---SCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCEEeCCEEEEEEC---CCCCHHHHHHHHHh
Confidence 334444444444444444444444433332222 2233 478998876 35677777665543
No 27
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=55.46 E-value=25 Score=23.63 Aligned_cols=56 Identities=5% Similarity=-0.040 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHH
Q 033254 25 QKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRK 83 (123)
Q Consensus 25 Q~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~k 83 (123)
.++++.|..++++|+..+.....+.-=-.-..-+.+||+++. .+.+-.+|...=..
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~~~~~~w~~~~~~Cy~~~~---~~~tw~~A~~~C~~ 58 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNH---ERMPFSKVKALCSE 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCEEEEEE---EEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCeEEeCCEEEEEeC---CCCCHHHHHHHHHh
Confidence 334444444444444444444333211112233578999874 34566776665443
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.86 E-value=56 Score=22.52 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHH
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAEL 92 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~ei 92 (123)
++.+.-..+|.|+-+++.+..++..|+..+.|.+.-. +.........+..++.++
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~-------------------------~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY-------------------------CMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777777776655422 223445555566666666
Q ss_pred HHHHhhhhHHHHHHHHhhcc
Q 033254 93 YVSSYLVNWRFFAIFLLFNI 112 (123)
Q Consensus 93 k~l~kqi~~~~~~~~~~~~~ 112 (123)
..+...|..+.----.|+||
T Consensus 94 ~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 94 AQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666554444445555
No 29
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=51.32 E-value=39 Score=20.64 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033254 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
..+-.+++.+-.+---|+.+++....+..+||++-...+-|++-|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 3445567777777788999999999999999999999988887664
No 30
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=49.79 E-value=58 Score=26.37 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCC-------CC-chhhhhccchhhc-cHHHHH
Q 033254 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNE-------GA-NVYKLIGPVLVKQ-DLAEAN 78 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~-------d~-kvYKlVG~VLVkq-~~~Ea~ 78 (123)
.++...+.+..+.-..++++++.+..++++|+++.-..-.+.+-|+.|.+ |+ -|--..-.+|.+. ...-..
T Consensus 6 ~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~R 85 (302)
T 3ibp_A 6 ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVER 85 (302)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888889999999999999999999999888888877643 21 2322233344443 344445
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q 033254 79 ANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 79 ~~l~kRlE~I~~eik~l~k 97 (123)
.++..+.+.|..+|.+|..
T Consensus 86 d~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 86 DEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 5666677777777777754
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.69 E-value=48 Score=23.48 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 033254 22 SKLQKDIGKNHQVRKKYTIQLG 43 (123)
Q Consensus 22 q~lQ~~lq~l~~qr~qLesql~ 43 (123)
..++.+++.+..+..+|++.++
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=48.85 E-value=28 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLG 43 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~ 43 (123)
..+..+..+...|+.++..+..+...+.+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777777777777777776654
No 33
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=48.59 E-value=47 Score=20.77 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
.++..+...........+.+-++..-+++|.+|.+..|+-++.
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~ 54 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEE 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888899999999999999999999987765
No 34
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.49 E-value=1.3e+02 Score=25.61 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=17.9
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 71 KQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
.......+..|..-++.++..|..|+..+..
T Consensus 163 ~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 163 DNNIPSSLRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566666666666666665544
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.81 E-value=40 Score=29.49 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=26.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQL 42 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql 42 (123)
...|..++++++..++.||..+..+..++++||..+
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888888888888888887653
No 36
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=46.30 E-value=1.3e+02 Score=25.05 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033254 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-++..++..+...|.++.|+...-+..+++-.+++ ...-+-...|++++..++.+++.++.
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV------------DELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444322221 11223345677777777777777777
Q ss_pred hhhHHHHHHHHhhcccc
Q 033254 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
.+..... .+-||-|
T Consensus 98 ~~~~~~~---~ipN~~~ 111 (455)
T 2dq0_A 98 KIDYYLW---RLPNITH 111 (455)
T ss_dssp HHHHHHT---TSCCCCC
T ss_pred HHHHHHH---hCCCCCC
Confidence 7765443 4455544
No 37
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=45.63 E-value=61 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHhcC
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRK--KYTIQLGENELVLKELGL 54 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~--qLesql~E~~~VleEL~~ 54 (123)
++++..+.+|+.+|.+++.....-. .......+.....++|..
T Consensus 40 ~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~ 84 (151)
T 2pih_A 40 DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEE 84 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHc
Confidence 6788999999999999887664321 234444444444444443
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.26 E-value=1.3e+02 Score=24.15 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=43.1
Q ss_pred HhHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHH
Q 033254 6 ALRELQRELETKANDLS----------KLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLA 75 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q----------~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~ 75 (123)
.+..+..+++..+.++. -||++|..+.....++++|.+-+....-+|- - +.+
T Consensus 374 al~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~ 435 (471)
T 3mq9_A 374 ALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM----------------A--SLD 435 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H--HHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH----------------H--HHH
Confidence 44445555555544443 2556666666666666666655443322221 1 111
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhHHH
Q 033254 76 EANANVRKRIEYISAELYVSSYLVNWRF 103 (123)
Q Consensus 76 Ea~~~l~kRlE~I~~eik~l~kqi~~~~ 103 (123)
.-+..-.+|++-++.+|++++.++.+.-
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233688888888888888876653
No 39
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=42.84 E-value=37 Score=23.55 Aligned_cols=86 Identities=12% Similarity=0.206 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC---cCCC----CchhhhhccchhhccHHHHHHHH
Q 033254 9 ELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL---LNEG----ANVYKLIGPVLVKQDLAEANANV 81 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~---l~~d----~kvYKlVG~VLVkq~~~Ea~~~l 81 (123)
.+.+++++.+.+.-.+....---.+|.-.+- ..|..-|-. +++| ++-|..-|. .-.++++|..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~AVNGSQLy~~s------~sVA~~LGGGA~vn~dGtitaPtY~I~g~--~YnnVGdAl~al 74 (106)
T 2yny_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYSLS------QSVADRLGGGASVNSDGTVNAPLYEVGTG--IYNNVGSALSAL 74 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCTTCCBCTTSCBCCCCEEETTE--EESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhcccccccHHHHHHHH------HHHHHHhCCCceeCCCCceecCeEEeCCc--eeccHHHHHHHH
Confidence 3445555555555555444444444433332 334544432 2222 445555443 234788888888
Q ss_pred HHhHHHHHHHHHHHHhhhhHH
Q 033254 82 RKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 82 ~kRlE~I~~eik~l~kqi~~~ 102 (123)
+.++..+...|..+..+|+.-
T Consensus 75 d~svt~i~~~I~~lt~~i~~~ 95 (106)
T 2yny_A 75 NTSMKQIEDKIEEILSKIYHI 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777653
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.60 E-value=58 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQ 41 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesq 41 (123)
++..+-.+-..|+.++..+......|...
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433
No 41
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.49 E-value=1.4e+02 Score=24.48 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033254 18 ANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 18 ~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
+.++-.+-++...+..+..+|.++.|+...-+..+++-.+++ ...-+-...+++++..++.+++.+..
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT------------TEIQNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT------------TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554444443322221 11122345677888888888888888
Q ss_pred hhhHHHHHHHHhhcccc
Q 033254 98 LVNWRFFAIFLLFNISH 114 (123)
Q Consensus 98 qi~~~~~~~~~~~~~~~ 114 (123)
.+..... .+-||-|
T Consensus 97 ~~~~~~~---~ipN~~~ 110 (425)
T 2dq3_A 97 ELKNTLL---WIPNLPH 110 (425)
T ss_dssp HHHHHHH---TSCCCCC
T ss_pred HHHHHHH---hCCCCCC
Confidence 8876544 3455544
No 42
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=40.34 E-value=1.2e+02 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033254 22 SKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 22 q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
..|+.+.+.+.....++-+|+.+.-...++++
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555554444
No 43
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=40.25 E-value=62 Score=22.28 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=15.1
Q ss_pred CCCchhhhhccchhhccHHHHHHHHHH
Q 033254 57 EGANVYKLIGPVLVKQDLAEANANVRK 83 (123)
Q Consensus 57 ~d~kvYKlVG~VLVkq~~~Ea~~~l~k 83 (123)
-+.+||+++. .+.+-.+|...=..
T Consensus 54 ~~~~Cy~~~~---~~~tw~~A~~~C~~ 77 (168)
T 1buu_A 54 SGKKFFVTNH---ERMPFSKVKALCSE 77 (168)
T ss_dssp TTSCEEEEEE---EEECHHHHHHHHHH
T ss_pred ECCEEEEEeC---CccCHHHHHHHHHh
Confidence 3578998874 34566666655443
No 44
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.84 E-value=59 Score=21.58 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033254 26 KDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 26 ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
.++..-..++..++.++.-|+.-+++|+.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666667777777777777777777765
No 45
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.25 E-value=83 Score=20.60 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=45.2
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHH
Q 033254 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGE----NELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANV 81 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E----~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l 81 (123)
++..+.+++++++.++.+|-.....+...+..|-+.+.| .+....||.. ..+++..+
T Consensus 3 ~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s-------------------~~~~~~r~ 63 (77)
T 2w83_C 3 DPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA-------------------VKQAKLKL 63 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------HHHHHHHH
Confidence 456777899999999999999999999998888777654 4555555543 34555566
Q ss_pred HHhHHHHHHHHHH
Q 033254 82 RKRIEYISAELYV 94 (123)
Q Consensus 82 ~kRlE~I~~eik~ 94 (123)
+.|+--++.++++
T Consensus 64 ~~ri~elEeElkr 76 (77)
T 2w83_C 64 EEKNRELEEELRK 76 (77)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665554
No 46
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=36.11 E-value=1e+02 Score=20.99 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHH---
Q 033254 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISA--- 90 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~--- 90 (123)
+.+.......++..++.-...|+.+++++.-.+.++++. -|.+.+.+-=+..|.+-+.|++.
T Consensus 43 ldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~---------------~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 43 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNA---------------SLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666677777777777776666433 35566777778888888888864
Q ss_pred -HHHHHHhhhh
Q 033254 91 -ELYVSSYLVN 100 (123)
Q Consensus 91 -eik~l~kqi~ 100 (123)
+++.+..||.
T Consensus 108 eEl~eLq~qi~ 118 (119)
T 3ol1_A 108 EEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHHHHhc
Confidence 6777666653
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.24 E-value=1e+02 Score=20.89 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hc-Cc-CCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHH
Q 033254 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKE--LG-LL-NEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVS 95 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleE--L~-~l-~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l 95 (123)
+|..++.++..+-..+.+|..+..+.++=++= |. .. +.++||..++-+-. .+|.....+-++.+..+++++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa-----~~a~~~~~~~~e~Lq~E~erL 87 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPT-----SVARQRLREDHSQLQAECERL 87 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433 21 11 23568887766543 456666677788888888887
Q ss_pred Hhhh
Q 033254 96 SYLV 99 (123)
Q Consensus 96 ~kqi 99 (123)
...+
T Consensus 88 r~~v 91 (100)
T 1go4_E 88 RGLL 91 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 48
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=35.04 E-value=38 Score=25.71 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=23.5
Q ss_pred hhccHHHHHHHHHHhHHHHHHHHHHHHh
Q 033254 70 VKQDLAEANANVRKRIEYISAELYVSSY 97 (123)
Q Consensus 70 Vkq~~~Ea~~~l~kRlE~I~~eik~l~k 97 (123)
|..-.++|+.++++|-+.|..+.+++++
T Consensus 64 v~~~adqa~~nv~eRek~l~kEk~si~~ 91 (199)
T 2ap3_A 64 RGKAVKDLIKNADDRLKEFEKEEDAIKK 91 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999988854
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.42 E-value=51 Score=27.63 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=36.8
Q ss_pred hhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcc
Q 033254 69 LVKQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNI 112 (123)
Q Consensus 69 LVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~ 112 (123)
=++...+++..+++.|++.|+.++..+.+--.+.|-.+..++|+
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~ 96 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVEL 96 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34566777779999999999999999999988888888777665
No 50
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.11 E-value=94 Score=20.00 Aligned_cols=41 Identities=10% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 033254 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGL 54 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~ 54 (123)
++++...++..-++++.-...+..++.++.|-+..+.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666777777788888888888887777753
No 51
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=33.88 E-value=1.1e+02 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033254 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVL 49 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~Vl 49 (123)
+.+...+..+++.++.+...+..+..++-....+++..+
T Consensus 138 ~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 138 QAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555554444
No 52
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.09 E-value=43 Score=21.58 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 78 NANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
...|..+++.++.++..+..+|+|
T Consensus 24 le~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 568899999999999999999987
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.06 E-value=1.5e+02 Score=24.26 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhHHHH
Q 033254 76 EANANVRKRIEYISAELYVSSYLVNWRFF 104 (123)
Q Consensus 76 Ea~~~l~kRlE~I~~eik~l~kqi~~~~~ 104 (123)
+....+++..+.++.+++.+...+++-|-
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455556666777777777777766553
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=32.05 E-value=1.3e+02 Score=20.87 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGEN 45 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~ 45 (123)
.+...+.....+++.++.+....+..|+.++++.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k 39 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQS 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555777778888888888777776543
No 55
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.90 E-value=1.7e+02 Score=22.00 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHhcCcCCCCchhhhhccchhh--ccHHHHHHHHHHhH
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGEN-----ELVLKELGLLNEGANVYKLIGPVLVK--QDLAEANANVRKRI 85 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~-----~~VleEL~~l~~d~kvYKlVG~VLVk--q~~~Ea~~~l~kRl 85 (123)
.+.....+|+.+|+.+..+..-...+++.+++. +.+++++.. +. .++.|--.|.. .+.++.-..+.---
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~---~~-~~~~l~~~l~~~~~t~~~la~~~~l~~ 192 (232)
T 2qlz_A 117 TLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGD---MT-QLAILHYLLLNGRATVEELSDRLNLKE 192 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---TT-HHHHHHHHHHSSEEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cc-HHHHHHHHHhcCCCCHHHHHHHhCcCH
Confidence 355677888888888888888888888888776 566666765 33 78887777773 36777777766666
Q ss_pred HHHHHHHHHHHh
Q 033254 86 EYISAELYVSSY 97 (123)
Q Consensus 86 E~I~~eik~l~k 97 (123)
..++.-++.|.+
T Consensus 193 ~~V~~~l~~L~~ 204 (232)
T 2qlz_A 193 REVREKISEMAR 204 (232)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666666643
No 56
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=30.60 E-value=73 Score=22.33 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033254 11 QRELETKANDLSKLQKDIGKN 31 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l 31 (123)
++.++.++.+++.++.++...
T Consensus 32 l~~v~~ll~~h~~~~~ei~~~ 52 (214)
T 1s35_A 32 LPEAEQLLQQHAGIKDEIDGH 52 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666655543
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.60 E-value=1.1e+02 Score=19.60 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=31.0
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033254 71 KQDLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
..+.++-+..|+.|+-|.+.-|..|+..+..++..|
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~I 44 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTG 44 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999999999999999998877
No 58
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.07 E-value=1.3e+02 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 15 ETKANDLSKLQKDIGKNHQVRKKYTIQ 41 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesq 41 (123)
+....+++.|+.++..+.++.+...+|
T Consensus 63 q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 63 LEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666655555543
No 59
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.32 E-value=2.6e+02 Score=23.63 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHhhcccc
Q 033254 78 NANVRKRIEYISAELYVSSYLVNWRFFAIFLLFNISH 114 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~~~~~~~~~~~~~ 114 (123)
...|++++..++.++..+..++.... ..+-||-|
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l---~~iPN~~~ 146 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLM---LNVGNILH 146 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCC
Confidence 55677777777777777777776533 44556555
No 60
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=28.81 E-value=1.5e+02 Score=20.83 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHhHHHHHHHHH
Q 033254 14 LETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELY 93 (123)
Q Consensus 14 ~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik 93 (123)
+..-+.+.+.++..++.+.....+|......+ +... .++. -+++..+.....+..+-..|...|+
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~---L~~~---~~~~---------~~k~~le~l~~~i~~~a~~ik~~Lk 102 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDI---LSAP---QTDD---------QMKEELEELMTDIKRTANKVRGKLK 102 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CC-------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcC---CchH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777776664332 2221 1222 2567888888889999999999999
Q ss_pred HHHhhh
Q 033254 94 VSSYLV 99 (123)
Q Consensus 94 ~l~kqi 99 (123)
.+++.+
T Consensus 103 ~l~~~~ 108 (180)
T 1s94_A 103 TIELNI 108 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888654
No 61
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=28.50 E-value=52 Score=22.78 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=30.9
Q ss_pred CchhhhhccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 59 ANVYKLIGPVLVKQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 59 ~kvYKlVG~VLVkq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
.+-|.-||..|- .++..+.++..++..+...+..+..+|..
T Consensus 61 g~~YnnVGdAl~--ald~svt~i~~~I~~lt~~i~~~~~~i~~ 101 (106)
T 2yny_A 61 TGIYNNVGSALS--ALNTSMKQIEDKIEEILSKIYHIENEIAR 101 (106)
T ss_dssp TEEESSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999987 57777888777777777777777666653
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.48 E-value=1.6e+02 Score=20.80 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033254 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
+++.|+.++..+.++.+...+++.+...--+++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 4777777777777777777776666555544443
No 63
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=27.45 E-value=1.5e+02 Score=20.42 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=13.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhhhhHH
Q 033254 78 NANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 78 ~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
.+.|..|++.|...=+.|......+
T Consensus 129 ~~~I~~rl~eL~~~W~~L~~~~~~R 153 (161)
T 3lbx_A 129 HEETKAHIEELRHLWDLLLELTLEK 153 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655555555444443
No 64
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=27.33 E-value=1.4e+02 Score=20.09 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=19.1
Q ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 71 KQDLAEANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 71 kq~~~Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
.+.++++..++++.+..++.+|..++.....
T Consensus 42 c~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 42 CQQVDMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666554443
No 65
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=26.75 E-value=1.4e+02 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 9 ELQRELETKANDLSKLQKDIGKNHQ 33 (123)
Q Consensus 9 ~l~~~~q~~~~~~q~lQ~~lq~l~~ 33 (123)
.+...+++.+.+|+..|..+..-..
T Consensus 122 ~L~~~f~~~m~~yq~~Q~~y~e~~k 146 (267)
T 1dn1_B 122 TLSRKFVEVMSEYNATQSDYRERCK 146 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655443
No 66
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.36 E-value=49 Score=19.53 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=20.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhH
Q 033254 76 EANANVRKRIEYISAELYVSSYLVNW 101 (123)
Q Consensus 76 Ea~~~l~kRlE~I~~eik~l~kqi~~ 101 (123)
..+..|.+|++.++..+..+...+.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999888776643
No 67
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=25.19 E-value=2.2e+02 Score=21.65 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccchhhccHHHHHHHHHHh
Q 033254 20 DLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKR 84 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~VLVkq~~~Ea~~~l~kR 84 (123)
+...++++...+..+...|.....+|+... .++.+++-.+|-..|.++....|..-
T Consensus 73 Q~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~---------~~~~~l~l~LL~a~sl~~l~~~L~~~ 128 (252)
T 3e98_A 73 QVRLLRERNIEMRHRLSQLMDVARENDRLF---------DKTRRLVLDLLDATSLEDVVSTVEDS 128 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 356778888888888888888889998887 45666777777777888887777543
No 68
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=25.05 E-value=1.4e+02 Score=19.09 Aligned_cols=34 Identities=18% Similarity=0.036 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHH
Q 033254 73 DLAEANANVRKRIEYISAELYVSSYLVNWRFFAI 106 (123)
Q Consensus 73 ~~~Ea~~~l~kRlE~I~~eik~l~kqi~~~~~~~ 106 (123)
+..+|+..|...++.|+...+.+.++|+..--.+
T Consensus 3 ~~~~AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~A 36 (79)
T 4abm_A 3 MEQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAA 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999999988888888887654433
No 69
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=24.78 E-value=81 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=14.2
Q ss_pred CCchhhhhccchhhccHHHHHHHHHH
Q 033254 58 GANVYKLIGPVLVKQDLAEANANVRK 83 (123)
Q Consensus 58 d~kvYKlVG~VLVkq~~~Ea~~~l~k 83 (123)
+.+||+++. .+.+-.+|...=..
T Consensus 63 ~~~Cy~~~~---~~~~w~~A~~~C~~ 85 (177)
T 1pwb_A 63 GEKIFKTAG---FVKPFTEAQLLCTQ 85 (177)
T ss_dssp TTEEEEEEE---EEEEHHHHHHHHHH
T ss_pred CCEEEEEcC---CccCHHHHHHHHHh
Confidence 578998864 34566666655443
No 70
>3dlq_I Interleukin-22; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} SCOP: a.26.1.3 PDB: 1m4r_A 3g9v_B 3q1s_I 1ykb_A* 3dgc_L*
Probab=24.47 E-value=35 Score=24.66 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccc
Q 033254 11 QRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPV 68 (123)
Q Consensus 11 ~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~V 68 (123)
.|.+...++-|..++..|+.-.....- +..-...+.++..+++++ +.-+||.+|.+
T Consensus 84 ~p~i~~l~nsf~~L~~~L~~C~~~~~c-~~~~~~v~~ik~~f~kL~-~~g~~KAiGEL 139 (151)
T 3dlq_I 84 QPYMQEVVPFLARLSNRLSTCHIEGDD-LHIQRNVQKLKDTVKKLG-ESGEIKAIGEL 139 (151)
T ss_dssp TTHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHT-HHHHHHHHHTH
T ss_pred CCcHHHHHHHHHHHHHHHHhCcccCCc-cchhHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 356677788888888888764321100 011114678888888888 58899999964
No 71
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.33 E-value=1.3e+02 Score=18.50 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033254 8 RELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLG 43 (123)
Q Consensus 8 ~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~ 43 (123)
-++.++++++-.++.++.+.+..-...|..||.-+.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888876554
No 72
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.94 E-value=1.6e+02 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033254 20 DLSKLQKDIGKNHQVRKKYTIQLG 43 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~ 43 (123)
+.+.|+..+..+..++++|..++.
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 73
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.66 E-value=1.2e+02 Score=17.70 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 033254 26 KDIGKNHQVRKKYTIQLGENELVLKELG 53 (123)
Q Consensus 26 ~~lq~l~~qr~qLesql~E~~~VleEL~ 53 (123)
+++.++...+.+.+.++++...=+.+|+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 74
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.62 E-value=1.7e+02 Score=19.57 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=21.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 033254 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGEN 45 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~ 45 (123)
..-+...+...-..+..++.++..+..++..+..++++.
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555555543
No 75
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=23.41 E-value=1.4e+02 Score=20.04 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQ 33 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~ 33 (123)
+..+..+.+|+.+|.+++....
T Consensus 39 ~ea~~li~~F~~~q~~~q~~q~ 60 (122)
T 2oeq_A 39 ETAYRMFANVRDIQLRLHEKQM 60 (122)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999988887753
No 76
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.92 E-value=1.8e+02 Score=19.67 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 033254 15 ETKANDLSKLQKDIGKNHQVRKKYTIQLGEN 45 (123)
Q Consensus 15 q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~ 45 (123)
.....+|+....++..+....++|+.+++..
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777888888888888877653
No 77
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.85 E-value=2.1e+02 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 8 RELQR-ELETKANDLSKLQKDIGKNHQVRKKYTIQL 42 (123)
Q Consensus 8 ~~l~~-~~q~~~~~~q~lQ~~lq~l~~qr~qLesql 42 (123)
+.+.. .+...+.++..+-++|+.+.++..+|..|.
T Consensus 93 s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~ 128 (140)
T 3iyn_Q 93 SSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQV 128 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 378888888889899998888888877543
No 78
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.56 E-value=1.6e+02 Score=19.23 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 033254 12 RELETKANDLSKLQKDIGKNHQVRKKYTIQLGENE 46 (123)
Q Consensus 12 ~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~ 46 (123)
..+.++..+...++.++..+.+.+.+++..+.|.+
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888899999999999999998888776
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.99 E-value=1.7e+02 Score=18.92 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033254 6 ALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELV 48 (123)
Q Consensus 6 ~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~V 48 (123)
+...+.+..++.-.++..++.....+.+++..+...+.+.+..
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4566677788888888999999999999999999999888663
No 80
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.65 E-value=1.6e+02 Score=18.48 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=23.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 7 LRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQ 41 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesq 41 (123)
..+-..++|.++.--+.+.+++..+...++.|.++
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 33444567777777777777777777777777654
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.52 E-value=3.3e+02 Score=22.16 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhHH
Q 033254 76 EANANVRKRIEYISAELYVSSYLVNWR 102 (123)
Q Consensus 76 Ea~~~l~kRlE~I~~eik~l~kqi~~~ 102 (123)
.-...++++.+.....+..++++++.-
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444455666666666666666655554
No 82
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=21.33 E-value=1.6e+02 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccc
Q 033254 5 AALRELQRELETKANDLSKLQKDIG---------------KNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPV 68 (123)
Q Consensus 5 ~~~~~l~~~~q~~~~~~q~lQ~~lq---------------~l~~qr~qLesql~E~~~VleEL~~l~~d~kvYKlVG~V 68 (123)
++.+.+|..+|..+......-.++. -|.+.|.++..-..-.+.|++.|-. +..+=.+|||.
T Consensus 160 ssvqGLP~~vQdq~~~a~~~a~eL~s~fs~a~Sf~Dl~~~~L~qsr~~l~~~~~sld~v~d~l~~---n~PL~WLVGPF 235 (247)
T 1szi_A 160 ASIQGLPSHVREQAQQARSQVNDLQATFSGIHSFQDLSAGVLAQTRERIARAREALDNTVEYVAQ---NTPAMWLVGPF 235 (247)
T ss_dssp HTTTTSCHHHHHHHHHHHHHHHHHHHHGGGCCSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHT---CCCTTCEEEEE
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhcCHHHHHHhHHHHHHHHHHHHHHHHHHHh---CCCccccccCc
Confidence 4667788888888777777766665 3556666666555555666666554 56677788876
No 83
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.10 E-value=2.6e+02 Score=21.55 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=31.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHhcCcCCCCchhhhhccc
Q 033254 7 LRELQRELETKANDLSKLQKDIGKNHQV----RKKYTIQLGENELVLKELGLLNEGANVYKLIGPV 68 (123)
Q Consensus 7 ~~~l~~~~q~~~~~~q~lQ~~lq~l~~q----r~qLesql~E~~~VleEL~~l~~d~kvYKlVG~V 68 (123)
.+.+..++++.-.....+..++..+... ...+...+.--..+.+.++.+..+.+||-+-|=|
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gWv 293 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMAAGKYGAALMGWV 293 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcEEEEEEEe
Confidence 3444455555555555555555555554 2222233333344445555566667777765544
No 84
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=20.51 E-value=1.9e+02 Score=18.88 Aligned_cols=44 Identities=30% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033254 5 AALRELQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELV 48 (123)
Q Consensus 5 ~~~~~l~~~~q~~~~~~q~lQ~~lq~l~~qr~qLesql~E~~~V 48 (123)
.++..++.-+......+++.|.=...-.....+|-.||+.|=-+
T Consensus 16 ~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgA 59 (77)
T 2bez_C 16 KAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35666666666666666677766666677777777777665433
No 85
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.48 E-value=2e+02 Score=19.58 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 13 ELETKANDLSKLQKDIGKNHQVRK 36 (123)
Q Consensus 13 ~~q~~~~~~q~lQ~~lq~l~~qr~ 36 (123)
.+..+..+++.|+.++..+.....
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666555433
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.21 E-value=1.5e+02 Score=17.72 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.3
Q ss_pred hHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033254 3 SAAALRELQRELETKANDLSKLQKDIGKNHQV 34 (123)
Q Consensus 3 ~~~~~~~l~~~~q~~~~~~q~lQ~~lq~l~~q 34 (123)
+++.+..+..+++.+-.+..+|+.+...+...
T Consensus 2 s~aki~~Lss~V~~L~~kVdqLssdV~al~~~ 33 (52)
T 1jcd_A 2 SNAKADQASSDAQTANAKADQASNDANAARSD 33 (52)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777777777766655543
No 87
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.09 E-value=2.4e+02 Score=22.50 Aligned_cols=29 Identities=3% Similarity=0.071 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 033254 20 DLSKLQKDIGKNHQVRKKYTIQLGENELV 48 (123)
Q Consensus 20 ~~q~lQ~~lq~l~~qr~qLesql~E~~~V 48 (123)
.++.||..+..+..++++|+..+++....
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777778888887777665443
Done!