Query 033256
Match_columns 123
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 19:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0l_A Outer membrane protein 21.0 51 0.0018 23.3 2.1 8 14-21 188-195 (216)
2 2wno_A Tumor necrosis factor-i 12.9 42 0.0015 23.2 0.0 13 87-99 133-145 (149)
3 1no5_A Hypothetical protein HI 12.8 43 0.0015 22.2 -0.0 9 15-23 30-38 (114)
4 1wot_A Putative minimal nucleo 12.6 39 0.0013 21.9 -0.3 7 15-21 28-34 (98)
5 2k7m_A GAP junction alpha-5 pr 12.2 2.4E+02 0.0082 20.1 3.8 24 79-102 29-54 (109)
6 1r5s_A GAP junction alpha-1 pr 11.5 2.9E+02 0.01 20.4 4.2 15 85-99 53-67 (132)
7 1tba_A TAFII230, transcription 10.6 68 0.0023 21.5 0.4 15 6-20 3-17 (67)
8 1ylq_A Putative nucleotidyltra 10.3 51 0.0017 21.3 -0.3 6 15-20 20-25 (96)
9 2gqb_A Conserved hypothetical 9.8 2.9E+02 0.0099 20.4 3.6 12 14-25 8-19 (130)
10 1smz_A Transportan in bicellar 9.4 56 0.0019 18.5 -0.3 8 13-20 6-13 (27)
No 1
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=20.95 E-value=51 Score=23.29 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=6.3
Q ss_pred cccccCCC
Q 033256 14 LGYLFGTG 21 (123)
Q Consensus 14 LGYLFGsg 21 (123)
|+|-||..
T Consensus 188 l~Y~Fg~~ 195 (216)
T 2k0l_A 188 VSYRFGQE 195 (216)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 78999854
No 2
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=12.94 E-value=42 Score=23.16 Aligned_cols=13 Identities=31% Similarity=0.481 Sum_probs=0.0
Q ss_pred cCCCccccccccC
Q 033256 87 ADGQNCGNFLTDR 99 (123)
Q Consensus 87 ~~gqN~GNfiTdr 99 (123)
.-.|||+|||+.|
T Consensus 133 ~~~~~c~n~~~g~ 145 (149)
T 2wno_A 133 TTSTGNKNFLAGR 145 (149)
T ss_dssp -------------
T ss_pred ccccCCCceeccc
Confidence 4568999999876
No 3
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=12.76 E-value=43 Score=22.18 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.4
Q ss_pred ccccCCCCC
Q 033256 15 GYLFGTGEA 23 (123)
Q Consensus 15 GYLFGsgE~ 23 (123)
=|||||-..
T Consensus 30 v~LFGS~Ar 38 (114)
T 1no5_A 30 VWAFGSRVK 38 (114)
T ss_dssp EEEEGGGTT
T ss_pred EEEEeccCC
Confidence 489998543
No 4
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=12.57 E-value=39 Score=21.92 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=5.1
Q ss_pred ccccCCC
Q 033256 15 GYLFGTG 21 (123)
Q Consensus 15 GYLFGsg 21 (123)
=|||||-
T Consensus 28 v~LFGS~ 34 (98)
T 1wot_A 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEEccc
Confidence 4888873
No 5
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=12.24 E-value=2.4e+02 Score=20.12 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=17.6
Q ss_pred CCCCcccc--cCCCccccccccCCCc
Q 033256 79 NNANNYFR--ADGQNCGNFLTDRPTT 102 (123)
Q Consensus 79 ~~~Nny~r--~~gqN~GNfiTdrpst 102 (123)
..+++|+. +.-||+.|+-|.|=..
T Consensus 29 k~~~~~~~~laS~qN~an~~aEq~~~ 54 (109)
T 2k7m_A 29 KFFSDFSNNMGSRKNPDPLATEEVPN 54 (109)
T ss_dssp CSSTTSCSTTSSCSCCCSSSSSCCSS
T ss_pred cccccccccchhhhhhhhhhhhcccc
Confidence 45677755 5579999999887544
No 6
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=11.52 E-value=2.9e+02 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.7
Q ss_pred cccCCCccccccccC
Q 033256 85 FRADGQNCGNFLTDR 99 (123)
Q Consensus 85 ~r~~gqN~GNfiTdr 99 (123)
..+.-||.-||.|++
T Consensus 53 ~laSEQNWAN~atEq 67 (132)
T 1r5s_A 53 KQASEQNWANYSAEQ 67 (132)
T ss_dssp CCSCSCSSCCTTCCH
T ss_pred cchhhhhhhhhhhhh
Confidence 455589999999954
No 7
>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} SCOP: a.15.1.1
Probab=10.60 E-value=68 Score=21.50 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=12.1
Q ss_pred cCCCCccccccccCC
Q 033256 6 SSGGGQSSLGYLFGT 20 (123)
Q Consensus 6 SsGGGQSSLGYLFGs 20 (123)
|-|+|-+-.|+|||-
T Consensus 3 s~g~g~~LtGfLFGN 17 (67)
T 1tba_A 3 SIGNGLDLTGILFGN 17 (67)
T ss_dssp CSSCSCCCTTHHHHC
T ss_pred CCCCCcceeeeeecc
Confidence 556788889999984
No 8
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=10.28 E-value=51 Score=21.26 Aligned_cols=6 Identities=50% Similarity=1.137 Sum_probs=4.3
Q ss_pred ccccCC
Q 033256 15 GYLFGT 20 (123)
Q Consensus 15 GYLFGs 20 (123)
=|||||
T Consensus 20 v~LFGS 25 (96)
T 1ylq_A 20 IYLYGS 25 (96)
T ss_dssp EEEESH
T ss_pred EEEEEE
Confidence 378886
No 9
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=9.79 E-value=2.9e+02 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=8.6
Q ss_pred cccccCCCCCCC
Q 033256 14 LGYLFGTGEASP 25 (123)
Q Consensus 14 LGYLFGsgE~p~ 25 (123)
|+-|||+.++..
T Consensus 8 ~~kIfg~~~~aa 19 (130)
T 2gqb_A 8 MSAIFGDSAAAS 19 (130)
T ss_dssp HHHHTCCCSSCT
T ss_pred HHHHhCCccccc
Confidence 566899887653
No 10
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=9.42 E-value=56 Score=18.46 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=6.0
Q ss_pred ccccccCC
Q 033256 13 SLGYLFGT 20 (123)
Q Consensus 13 SLGYLFGs 20 (123)
|-|||.|.
T Consensus 6 SAGYLLGp 13 (27)
T 1smz_A 6 SAGYLLGK 13 (27)
T ss_dssp HHTTTTTT
T ss_pred ccceeecc
Confidence 56899874
Done!