Query 033256
Match_columns 123
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 19:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1skza1 g.3.15.1 (A:7-58) Fact 41.8 4.4 0.00032 24.3 1.1 17 93-109 13-34 (52)
2 d2gqba1 a.282.1.1 (A:1-130) Hy 29.1 32 0.0023 23.8 4.2 13 14-26 8-20 (130)
3 d1wiga1 g.39.1.3 (A:1-32) Acti 16.4 20 0.0014 19.6 0.6 10 90-99 9-18 (32)
4 d1no5a_ d.218.1.5 (A:) Hypothe 16.4 14 0.001 22.8 -0.0 9 15-23 25-33 (100)
5 d1wota_ d.218.1.5 (A:) Unnamed 12.2 19 0.0014 22.3 -0.3 7 15-21 28-34 (98)
6 d2h9fa1 d.21.1.4 (A:1-182) Hyp 9.9 25 0.0019 25.3 -0.3 10 88-97 100-109 (182)
7 d2dloa1 g.39.1.3 (A:8-42) Thyr 8.4 49 0.0036 18.2 0.6 9 91-99 13-21 (35)
8 d1v6ga1 g.39.1.3 (A:1-41) Acti 6.9 1.6E+02 0.011 16.4 2.4 22 78-99 4-28 (41)
9 d1tbaa_ a.15.1.1 (A:) TAF(II)2 6.6 59 0.0043 20.2 0.4 15 6-20 3-17 (67)
10 d2j01p1 c.12.1.1 (P:5-150) Rib 5.9 1.1E+02 0.0079 19.8 1.5 13 1-13 15-27 (146)
No 1
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=41.79 E-value=4.4 Score=24.35 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=13.6
Q ss_pred ccccccCCC-----cceeeCCC
Q 033256 93 GNFLTDRPT-----TKVHAAPG 109 (123)
Q Consensus 93 GNfiTdrps-----trv~a~PG 109 (123)
-|+||||-+ .|||.+-|
T Consensus 13 cniitdrctcsgvrcrvhcphg 34 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHG 34 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTC
T ss_pred ceeeccceeeccceEEEECCCc
Confidence 489999986 58888765
No 2
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=29.05 E-value=32 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.5
Q ss_pred cccccCCCCCCCC
Q 033256 14 LGYLFGTGEASPA 26 (123)
Q Consensus 14 LGYLFGsgE~p~~ 26 (123)
++-+||..+...+
T Consensus 8 ~~kIFG~~~~~~~ 20 (130)
T d2gqba1 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHcCCccccCC
Confidence 4557997776544
No 3
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.36 E-value=20 Score=19.63 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.6
Q ss_pred CccccccccC
Q 033256 90 QNCGNFLTDR 99 (123)
Q Consensus 90 qN~GNfiTdr 99 (123)
..|.+|||.|
T Consensus 9 ~~C~~~ItGk 18 (32)
T d1wiga1 9 DSCEKYITGR 18 (32)
T ss_dssp SSSCCCCSSC
T ss_pred hhhhhhhhhh
Confidence 6899999986
No 4
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=16.36 E-value=14 Score=22.79 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.7
Q ss_pred ccccCCCCC
Q 033256 15 GYLFGTGEA 23 (123)
Q Consensus 15 GYLFGsgE~ 23 (123)
=|||||-..
T Consensus 25 v~LFGS~ar 33 (100)
T d1no5a_ 25 VWAFGSRVK 33 (100)
T ss_dssp EEEEGGGTT
T ss_pred EEEECCCCC
Confidence 499998654
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=12.18 E-value=19 Score=22.27 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=5.3
Q ss_pred ccccCCC
Q 033256 15 GYLFGTG 21 (123)
Q Consensus 15 GYLFGsg 21 (123)
=|||||-
T Consensus 28 v~lFGS~ 34 (98)
T d1wota_ 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEECCc
Confidence 4899983
No 6
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.85 E-value=25 Score=25.31 Aligned_cols=10 Identities=50% Similarity=0.744 Sum_probs=8.1
Q ss_pred CCCccccccc
Q 033256 88 DGQNCGNFLT 97 (123)
Q Consensus 88 ~gqN~GNfiT 97 (123)
..+||||++.
T Consensus 100 ~~~NCGNm~s 109 (182)
T d2h9fa1 100 WSGNCGNLST 109 (182)
T ss_dssp CSCCCHHHHH
T ss_pred ccccccchhh
Confidence 3789999875
No 7
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.39 E-value=49 Score=18.19 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.6
Q ss_pred ccccccccC
Q 033256 91 NCGNFLTDR 99 (123)
Q Consensus 91 N~GNfiTdr 99 (123)
-||.+||||
T Consensus 13 ~C~~~I~dr 21 (35)
T d2dloa1 13 TCSQPILDR 21 (35)
T ss_dssp TTCCBCCSC
T ss_pred HhchHHHHH
Confidence 588999997
No 8
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.88 E-value=1.6e+02 Score=16.43 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=16.1
Q ss_pred CCCCCcccccCC---CccccccccC
Q 033256 78 GNNANNYFRADG---QNCGNFLTDR 99 (123)
Q Consensus 78 ~~~~Nny~r~~g---qN~GNfiTdr 99 (123)
+++--.|.+--| +.|+.|||..
T Consensus 4 ~~~~~DYq~~fG~~C~~C~~~ItG~ 28 (41)
T d1v6ga1 4 GSSGLDYQRLYGTRCFSCDQFIEGE 28 (41)
T ss_dssp CCCCSCGGGSCCCBCTTTCCBCCSC
T ss_pred CcccccHHHHhCcccccccCEeeee
Confidence 445557887776 7889999864
No 9
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=6.62 E-value=59 Score=20.16 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=12.4
Q ss_pred cCCCCccccccccCC
Q 033256 6 SSGGGQSSLGYLFGT 20 (123)
Q Consensus 6 SsGGGQSSLGYLFGs 20 (123)
|-|+|-+--|+|||-
T Consensus 3 ~ig~~~~LtGfLFGN 17 (67)
T d1tbaa_ 3 SIGNGLDLTGILFGN 17 (67)
T ss_dssp CSSCSCCCTTHHHHC
T ss_pred CcCCCcceeeeeecc
Confidence 567788999999984
No 10
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=5.86 E-value=1.1e+02 Score=19.83 Aligned_cols=13 Identities=46% Similarity=0.928 Sum_probs=0.0
Q ss_pred CCCCccCCCCccc
Q 033256 1 MGRGVSSGGGQSS 13 (123)
Q Consensus 1 MgRGvSsGGGQSS 13 (123)
.|||.+||-|.+|
T Consensus 15 ~GRG~gsg~Gkt~ 27 (146)
T d2j01p1 15 VGRGPGSGHGKTA 27 (146)
T ss_dssp CCCCSCSSSSSCT
T ss_pred ccCCCCCCCCccC
Done!