BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033258
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 1 MDLSTFDP----NDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPV 56
+DL FDP N +F E+ E YF++ K G V GYW+A G D +
Sbjct: 55 IDLYKFDPWVLPNKALFGEK----EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 110
Query: 57 YSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYA 116
++ + VG KK FY+G P+G K+ W M EY RLI + N T++ +
Sbjct: 111 STEGQR---VGIKKALVFYIGKAPKGTKTNWIMHEY----RLIEPSRRNGS--TKLDDWV 161
Query: 117 VCKITK 122
+C+I K
Sbjct: 162 LCRIYK 167
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 1 MDLSTFDP----NDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPV 56
+DL FDP N +F E+ E YF++ K G V GYW+A G D +
Sbjct: 52 IDLYKFDPWVLPNKALFGEK----EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII 107
Query: 57 YSDREMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYA 116
++ + VG KK FY+G P+G K+ W M EY RLI + N T++ +
Sbjct: 108 STEGQR---VGIKKALVFYIGKAPKGTKTNWIMHEY----RLIEPSRRNGS--TKLDDWV 158
Query: 117 VCKITK 122
+C+I K
Sbjct: 159 LCRIYK 164
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDR 60
+DL FDP D+ A E YF+ K G GYW+A G D PV
Sbjct: 50 VDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-- 107
Query: 61 EMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 94
+G KK FY G P G K+ W M EYR+
Sbjct: 108 -RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 140
>pdb|2XTL|A Chain A, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
pdb|2XTL|B Chain B, Structure Of The Major Pilus Backbone Protein From
Streptococcus Agalactiae
Length = 452
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 14 DERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKK 70
D +AN Y Y W+ +K K +V+ + +G +E G+ YS E + G+ K
Sbjct: 355 DAFVKAN--YSYEWVEDKNAKNVVKLISNDKGQFEITGLTEGQYSLEETQAPTGYAK 409
>pdb|1WI0|A Chain A, Solution Structure Of The Pb1 Domain Of Mouse Mitogen
Activated Protein Kinase Kinase 5 (Map2k5)
Length = 113
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 8 PNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVG 67
PN D + + +++ G+ + + T Y + DG + V SD EMK M+
Sbjct: 24 PNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAML- 82
Query: 68 FKKNWTFYLGTEPEGQKSAWSMTEYRVNPRLIPA 101
++Y T E Q + + ++ PR P+
Sbjct: 83 -----SYYYSTVMEQQVNGQLIEPLQIFPRSGPS 111
>pdb|2NPT|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2NPT|C Chain C, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2O2V|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 3 (Map3k3b-Phox)
Length = 106
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 8 PNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVG 67
PN D + + +++ G+ + + T Y + DG + V SD EMK M+
Sbjct: 22 PNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAML- 80
Query: 68 FKKNWTFYLGTEPEGQKSAWSMTEYRVNPR 97
++Y T E Q + + ++ PR
Sbjct: 81 -----SYYYSTVMEQQVNGQLIEPLQIFPR 105
>pdb|4IC7|E Chain E, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|B Chain B, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
Length = 126
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 8 PNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVG 67
PN D + + +++ G+ + + T Y + DG + V SD EMK M+
Sbjct: 11 PNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAML- 69
Query: 68 FKKNWTFYLGTEPEGQKSAWSMTEYRVNPR 97
++Y T E Q + + ++ PR
Sbjct: 70 -----SYYYSTVMEQQVNGQLIEPLQIFPR 94
>pdb|3RIM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
pdb|3RIM|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Transketolase (rv1449c)
Length = 700
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 19 ANETYFYAW---LVNKRGKGMVQRVVTKRGYWEADGVD 53
ANET YAW L + G G V ++T++G DG D
Sbjct: 526 ANETA-YAWRTILARRNGSGPVGLILTRQGVPVLDGTD 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,080,995
Number of Sequences: 62578
Number of extensions: 163770
Number of successful extensions: 394
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 13
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)