Query 033258
Match_columns 123
No_of_seqs 111 out of 794
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3E-45 1E-49 263.8 11.6 119 1-123 50-168 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-44 4.6E-49 260.0 10.6 114 1-123 52-165 (171)
3 3pp4_P B-lymphocyte antigen CD 34.6 20 0.00069 17.0 1.4 13 2-14 1-13 (25)
4 1ews_A RK-1 defensin, alpha-de 24.3 33 0.0011 16.7 1.2 11 5-15 8-18 (32)
5 1yua_A Topoisomerase I; gene-r 14.2 75 0.0026 20.7 1.5 35 55-89 75-110 (122)
6 2xc8_A Gene 22 product; siphov 12.9 1.1E+02 0.0036 19.8 1.9 12 111-122 69-80 (146)
7 2zvv_Y Cyclin-dependent kinase 12.6 1E+02 0.0034 14.5 1.3 8 69-76 16-23 (26)
8 4fr9_A Uncharacterized protein 11.3 2.4E+02 0.0084 18.3 3.4 19 83-101 56-75 (144)
9 3alz_B CDW150; viral protein-r 10.2 63 0.0021 21.7 0.1 12 18-29 113-124 (149)
10 3rrr_A Fusion glycoprotein F0; 9.6 2.3E+02 0.008 17.0 2.5 23 83-105 23-45 (84)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3e-45 Score=263.82 Aligned_cols=119 Identities=31% Similarity=0.521 Sum_probs=96.3
Q ss_pred CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258 1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP 80 (123)
Q Consensus 1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~ 80 (123)
||||.+|||+||+.+..++++||||+++.+|+++|.|++|+|++||||++|++++|.+. | .+||+||+|+||.|++|
T Consensus 50 vDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~-g--~~vG~KktLvFy~g~~p 126 (174)
T 3ulx_A 50 VDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPR-G--RTLGIKKALVFYAGKAP 126 (174)
T ss_dssp CCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCS-S--SCCEEEEEEEEEESSTT
T ss_pred cccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeC-C--cEEEEEEEEEEecCCCC
Confidence 79999999999998877889999999999999999999999999999999999999874 3 68999999999999999
Q ss_pred CCCccCeEEEEEEeCCCCCCCCCCCCcccCCCCcEEEEEEeeC
Q 033258 81 EGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA 123 (123)
Q Consensus 81 ~~~kt~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~VlCrI~~r 123 (123)
++.+|+|+||||+|.+......+. .......++|||||||++
T Consensus 127 ~g~kT~WvMhEY~L~~~~~~~~~~-~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 127 RGVKTDWIMHEYRLADAGRAAAGA-KKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp SCEEEEEEEEEEEECSCC------------CCSSEEEEEEEES
T ss_pred CCCcCCeEEEEEEeCCCCCccccc-ccCCCCCCCEEEEEEEEc
Confidence 999999999999999876543111 112346799999999975
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-44 Score=260.01 Aligned_cols=114 Identities=32% Similarity=0.543 Sum_probs=93.0
Q ss_pred CCCCCCCCCCccccccCCCceEEEeeecccCCCCCCcceeeecccEEeecCCCeeEEcCCCceEEEEEEEEEEEeecCCC
Q 033258 1 MDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYSDREMKVMVGFKKNWTFYLGTEP 80 (123)
Q Consensus 1 vDvy~~~Pw~L~~~~~~~~~~wyFF~~~~~k~~~g~r~~R~~~~G~Wk~~g~~~~I~~~~g~~~~vG~kk~l~Fy~g~~~ 80 (123)
||||.+|||+||+.+..++++||||+++.+++++|.|++|+|++||||++|++++|.+. + .+||+|++|+||.|++|
T Consensus 52 ~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~-~--~~vG~KktLvFy~g~~p 128 (171)
T 1ut7_A 52 IDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE-G--QRVGIKKALVFYIGKAP 128 (171)
T ss_dssp CCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEET-T--EEEEEEEEEEEEESSTT
T ss_pred cccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEec-C--cEEEEEEEEEEEcCcCC
Confidence 79999999999998877899999999999999999999999999999999999999974 2 78999999999999999
Q ss_pred CCCccCeEEEEEEeCCCCCCCCCCCCcccCCCCcEEEEEEeeC
Q 033258 81 EGQKSAWSMTEYRVNPRLIPADQMNDDVKTRIVSYAVCKITKA 123 (123)
Q Consensus 81 ~~~kt~W~MhEY~l~~~~~~~~~~~~~~~~~~~~~VlCrI~~r 123 (123)
++.+|+|+||||+|....... ....+++|||||||++
T Consensus 129 ~g~kT~WvMhEY~l~~~~~~~------~~~~~~~~VlCrv~~k 165 (171)
T 1ut7_A 129 KGTKTNWIMHEYRLIEPSRRN------GSTKLDDWVLCRIYKK 165 (171)
T ss_dssp SCEEEEEEEEEEEECCCC--------------CCEEEEEEEEC
T ss_pred CCCcCCeEEEEEEcCCCcccc------CcccCCCEEEEEEEEc
Confidence 999999999999999875321 2245799999999975
No 3
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=34.59 E-value=20 Score=17.04 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=9.1
Q ss_pred CCCCCCCCCcccc
Q 033258 2 DLSTFDPNDVVFD 14 (123)
Q Consensus 2 Dvy~~~Pw~L~~~ 14 (123)
|||+|+|.+-.+.
T Consensus 1 nIynCE~a~pse~ 13 (25)
T 3pp4_P 1 NIYNCEPANPSEK 13 (26)
T ss_dssp -CCCCSCSSGGGT
T ss_pred CccccccCCcccc
Confidence 7899999665554
No 4
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=24.30 E-value=33 Score=16.72 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 033258 5 TFDPNDVVFDE 15 (123)
Q Consensus 5 ~~~Pw~L~~~~ 15 (123)
-+|||++...+
T Consensus 8 ycdpwevidgs 18 (32)
T 1ews_A 8 YCDPWEVIDGS 18 (32)
T ss_dssp SCCTTEEEEEC
T ss_pred ccChhheeccc
Confidence 37999998754
No 5
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=14.24 E-value=75 Score=20.73 Aligned_cols=35 Identities=29% Similarity=0.556 Sum_probs=21.1
Q ss_pred eEEcCCCceEEEEEEE-EEEEeecCCCCCCccCeEE
Q 033258 55 PVYSDREMKVMVGFKK-NWTFYLGTEPEGQKSAWSM 89 (123)
Q Consensus 55 ~I~~~~g~~~~vG~kk-~l~Fy~g~~~~~~kt~W~M 89 (123)
++.+.+|+..+|-+-| +=.=|.....+|..|+|.-
T Consensus 75 P~~D~~Gn~tivrfSRKtKeqYV~sE~~GKaTgW~a 110 (122)
T 1yua_A 75 PQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSA 110 (122)
T ss_dssp CSSCTTCCCEEEEEETTTTEEEEEECCTTSCCCCCE
T ss_pred CccCCCCCeeeEEeeccchhheeeeccCCcccceEE
Confidence 4555667666776655 3444444455677888854
No 6
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=12.86 E-value=1.1e+02 Score=19.77 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.9
Q ss_pred CCCcEEEEEEee
Q 033258 111 RIVSYAVCKITK 122 (123)
Q Consensus 111 ~~~~~VlCrI~~ 122 (123)
+.-+|.||+-|.
T Consensus 69 kkvswslckayl 80 (146)
T 2xc8_A 69 KKVSWSLCKAYL 80 (146)
T ss_dssp CCEEEEEEEEET
T ss_pred eeeeHHHHHHhc
Confidence 568999999873
No 7
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=12.56 E-value=1e+02 Score=14.48 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.9
Q ss_pred EEEEEEee
Q 033258 69 KKNWTFYL 76 (123)
Q Consensus 69 kk~l~Fy~ 76 (123)
|+.|+|+.
T Consensus 16 KRRlvf~~ 23 (26)
T 2zvv_Y 16 KRRLIFSX 23 (26)
T ss_pred hceEEEEe
Confidence 44555554
No 8
>4fr9_A Uncharacterized protein; BLIP-like, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-biology; HET: MLY MSE; 1.20A {Bacteroides fragilis}
Probab=11.27 E-value=2.4e+02 Score=18.29 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=13.1
Q ss_pred CccCeEEEEEEeCC-CCCCC
Q 033258 83 QKSAWSMTEYRVNP-RLIPA 101 (123)
Q Consensus 83 ~kt~W~MhEY~l~~-~~~~~ 101 (123)
....|+|+|+.+.. ..+|.
T Consensus 56 ~~G~w~~te~ei~~~~~LP~ 75 (144)
T 4fr9_A 56 ANANWLMTETELNSINNLPP 75 (144)
T ss_dssp TTSCEEEEEEEESSGGGSCH
T ss_pred CCCCEEEEEeccCchhhCcH
Confidence 34589999999853 44444
No 9
>3alz_B CDW150; viral protein-receptor complex, six-bladed beta-propeller FO immunoglobulin fold, beta-sandwich, viral protein-membrane complex; HET: NAG; 4.51A {Saguinus oedipus}
Probab=10.24 E-value=63 Score=21.68 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=7.9
Q ss_pred CCceEEEeeecc
Q 033258 18 RANETYFYAWLV 29 (123)
Q Consensus 18 ~~~~wyFF~~~~ 29 (123)
++..|||.+...
T Consensus 113 edEGwYfmtlEe 124 (149)
T 3alz_B 113 KDEGWYFMTLEK 124 (149)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccCceEEEEEec
Confidence 366777777654
No 10
>3rrr_A Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_A
Probab=9.60 E-value=2.3e+02 Score=17.01 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=18.5
Q ss_pred CccCeEEEEEEeCCCCCCCCCCC
Q 033258 83 QKSAWSMTEYRVNPRLIPADQMN 105 (123)
Q Consensus 83 ~kt~W~MhEY~l~~~~~~~~~~~ 105 (123)
-+|+|-|.-+.|.-.......++
T Consensus 23 LRTGWyt~V~tiels~i~~~~C~ 45 (84)
T 3rrr_A 23 LRTGWYTSVITIELSNIKENKCN 45 (84)
T ss_dssp EEEEEEEEEEEEECCCBCCCCSC
T ss_pred HHhcceeeEEEEEeccccccccc
Confidence 48999999999998877666554
Done!