BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033259
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
Query: 1 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQC 60
+D +++A+ F + YY FD +R+ L NLY+ SMLTFE ++QG+++IV KL SLPFQ+
Sbjct: 3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKV 62
Query: 61 QHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
QH ITT+D QP+ P G +LV ++G+L + EQ+ +FSQ+FHL+P S+YV NDIFRL
Sbjct: 63 QHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDG-NSYYVFNDIFRL 121
Query: 121 NYA 123
NY+
Sbjct: 122 NYS 124
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
D + K FV+HYY TF NR L LY SMLT+E + QG NIV K SL FQ+ Q
Sbjct: 12 DQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDTQFQGQANIVNKFNSLNFQRVQFE 71
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 121
IT VDCQPS P G +VFV+G++++ Q LKFSQ+F+LMP+ G F + ND+FRLN
Sbjct: 72 ITRVDCQPS-PNNGSIVFVTGDVRIDDGQ-PLKFSQVFNLMPSGNGGFMIFNDLFRLN 127
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ANENPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 7 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 66
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 67 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 120
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT++GQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISEVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 92.0 bits (227), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDEFRL 121
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY F +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F+ HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ QHS
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F Q F L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQEF-LLKNINDAWVCTNDMFRL 121
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 4 DSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
+ + +F++HYY FD +RT L +Y + S LT+EGQ+ QG IV KL+SLPFQ+ Q S
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQAS 67
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120
IT D QP+ P ++ V G L+ A E + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPT-PDSCIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRL 121
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 5 SVAKAFVEHYYTTFDANRTGLANLY-QEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHS 63
SV + FV YYT + L Y S + E + + G + I ++ L F C
Sbjct: 5 SVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAK 64
Query: 64 ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFR 119
I+ VD Q + G++V V+G L G Q +F+Q F L +YV NDIFR
Sbjct: 65 ISQVDAQAT-LGNGVVVQVTGELSNDG-QPMRRFTQTFVLAAQSPKKYYVHNDIFR 118
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 7 AKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITT 66
A+ FV YYTT D R L+ LY + L + G + G +++ LP + Q I+
Sbjct: 17 AEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQ--ISV 74
Query: 67 VDCQP----SGPA-GGMLVFVSGNLQLAGEQHALKFSQMFHLM--PTPQGSFY-VLNDIF 118
VDCQP + P+ +LV + G+++ G + F+Q F L +P + + + +D F
Sbjct: 75 VDCQPVHDEATPSQTTVLVVICGSVKFEGNKQR-DFNQNFILTAQASPSNTVWKIASDCF 133
Query: 119 RL 120
R
Sbjct: 134 RF 135
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 7 AKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITT 66
+K F++ YY D R + LY + S + G I G +I + +LP QH I +
Sbjct: 37 SKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALP--STQHDIQS 94
Query: 67 VDCQ--PSGP----AGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFR 119
+D Q P G +GGML+ V+G + + G+ F+Q L+ G + V +D FR
Sbjct: 95 LDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDSKRA-FTQTL-LLGVEDGKYKVKSDRFR 151
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTS 54
P V + FV YYT + L Y + S G + G + I K+ S
Sbjct: 9 PLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMS 68
Query: 55 LPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALK-FSQMFHLMP--TPQGSF 111
F C I VD + G++V V G L+ AL+ F Q F L P + F
Sbjct: 69 QNFTNCHTKIRHVDAHAT-LNDGVVVQVMG--LLSNNNQALRRFMQTFVLAPEGSVANKF 125
Query: 112 YVLNDIFR 119
YV NDIFR
Sbjct: 126 YVHNDIFR 133
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 223
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 44 GSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALK 96
G +N+ K++S PF Q +S T++C+ S G + V N+ +A E LK
Sbjct: 17 GDRNVF-KVSSTPFAQVGYSSKTIECKES-RIGKQPIAVPSNVTIALEGQDLK 67
>pdb|1Q40|B Chain B, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
pdb|1Q40|D Chain D, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
Length = 219
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLT 36
D ++A F+ +Y +DANR+ L LYQ S +
Sbjct: 12 DSRNLATNFIANYLKLWDANRSELXILYQNESQFS 46
>pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans.
pdb|3DOB|B Chain B, Peptide-Binding Domain Of Heat Shock 70 Kda Protein
F44e5.5 From C.Elegans
Length = 152
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 47 NIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPT 106
N++ + T +P + C+ T D QP G + G + + H L ++ + P
Sbjct: 21 NLIDRNTRIPTKACKTFTTYADNQP----GVSIQVYEGERAMTRDNHRLGTFELSGIPPA 76
Query: 107 PQG 109
P+G
Sbjct: 77 PRG 79
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 21 NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSI 64
N TG+ N + +TFE Q N + ++T LPF++ + ++
Sbjct: 282 NHTGIVNNIGQYDGITFEAQCPPAEGNDLGQITLLPFEKFKRTV 325
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P++ KA+ +H + +FDAN G + Q
Sbjct: 57 PEADPKAYAQHVFRSFDANSDGTLDFKQ 84
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P++ KA+ +H + +FDAN G + Q
Sbjct: 57 PEADPKAYAQHVFRSFDANSDGTLDFKQ 84
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
PD+ KA+ +H + +FD+N G
Sbjct: 65 PDTDPKAYAQHVFRSFDSNLDG 86
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With
Calcium Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium
Sensor In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr,
22 Structures
Length = 201
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 58 PEADPKAYAQHVFRSFDANSDG 79
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 PDSVAKAFVEHYYTTFDANRTG 24
P++ KA+ +H + +FDAN G
Sbjct: 57 PEADPKAYAQHVFRSFDANSDG 78
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin
Delta At 2.4 Angstroms
Length = 193
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 3 PDSVAKAFVEHYYTTFDANRTGLANLYQ 30
P A F EH + TFDAN G + +
Sbjct: 57 PYGDASKFAEHVFRTFDANGDGTIDFRE 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,659,480
Number of Sequences: 62578
Number of extensions: 128283
Number of successful extensions: 317
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 32
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)