Query 033259
Match_columns 123
No_of_seqs 111 out of 751
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 11:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00780 NTF2 Nuclear transport 100.0 3.6E-39 7.8E-44 215.9 15.9 118 2-122 1-119 (119)
2 KOG2104 Nuclear transport fact 100.0 8.3E-40 1.8E-44 214.5 12.4 118 3-122 6-123 (126)
3 PF02136 NTF2: Nuclear transpo 100.0 1.1E-32 2.3E-37 183.1 12.4 114 6-120 1-118 (118)
4 KOG0116 RasGAP SH3 binding pro 100.0 1.9E-32 4.1E-37 215.4 12.1 119 1-122 11-134 (419)
5 KOG4353 RNA export factor NXT1 100.0 1.5E-32 3.3E-37 182.6 7.5 116 3-122 12-136 (139)
6 PF10429 Mtr2: Nuclear pore RN 99.6 4.8E-15 1E-19 103.2 6.6 101 3-105 3-108 (166)
7 KOG3763 mRNA export factor TAP 99.4 2.6E-12 5.6E-17 103.8 10.7 115 3-120 337-495 (585)
8 cd00531 NTF2_like Nuclear tran 99.3 3.7E-10 8.1E-15 72.8 13.1 112 8-120 2-123 (124)
9 TIGR02246 conserved hypothetic 98.3 3.1E-05 6.6E-10 50.9 12.0 113 3-119 2-124 (128)
10 PF13474 SnoaL_3: SnoaL-like d 98.2 7.7E-05 1.7E-09 48.3 12.0 109 8-119 2-117 (121)
11 PF15008 DUF4518: Domain of un 98.0 6.8E-05 1.5E-09 56.5 9.3 118 2-121 126-259 (262)
12 PF14534 DUF4440: Domain of un 97.9 0.00034 7.3E-09 44.0 10.5 102 9-113 3-107 (107)
13 PF12680 SnoaL_2: SnoaL-like d 97.5 0.0017 3.7E-08 40.1 8.6 75 11-89 1-78 (102)
14 cd00781 ketosteroid_isomerase 97.1 0.015 3.3E-07 37.8 9.9 51 6-56 4-57 (122)
15 PF08332 CaMKII_AD: Calcium/ca 97.0 0.018 4E-07 39.0 10.2 110 4-116 3-122 (128)
16 PF12893 Lumazine_bd_2: Putati 97.0 0.032 6.9E-07 36.5 11.1 104 5-119 4-116 (116)
17 PF13577 SnoaL_4: SnoaL-like d 96.7 0.062 1.3E-06 34.8 10.3 68 5-72 7-80 (127)
18 COG4319 Ketosteroid isomerase 93.7 1 2.3E-05 30.9 8.5 99 16-116 21-127 (137)
19 COG4875 Uncharacterized protei 93.5 1.6 3.5E-05 29.7 10.3 53 3-55 36-90 (156)
20 TIGR02096 conserved hypothetic 92.7 1.8 3.8E-05 28.0 10.2 55 10-66 3-64 (129)
21 PRK09636 RNA polymerase sigma 77.4 11 0.00024 28.4 6.4 51 6-56 172-231 (293)
22 TIGR02960 SigX5 RNA polymerase 75.9 11 0.00024 28.6 6.1 50 6-55 205-257 (324)
23 PF07080 DUF1348: Protein of u 73.1 2.7 5.9E-05 28.9 1.9 38 17-54 22-60 (143)
24 PRK08241 RNA polymerase factor 72.6 7 0.00015 30.0 4.3 51 5-55 214-267 (339)
25 PF07366 SnoaL: SnoaL-like pol 71.9 5.9 0.00013 25.6 3.3 54 12-67 5-64 (126)
26 COG3631 Ketosteroid isomerase- 71.0 29 0.00064 23.5 8.2 52 5-56 4-62 (133)
27 smart00593 RUN domain involved 60.2 25 0.00054 20.4 4.1 45 7-55 10-54 (64)
28 PF02759 RUN: RUN domain; Int 45.9 14 0.0003 24.1 1.5 27 11-37 82-108 (133)
29 PF07858 LEH: Limonene-1,2-epo 43.2 1E+02 0.0022 20.7 9.8 51 2-55 2-54 (125)
30 cd00667 ring_hydroxylating_dio 41.3 1.1E+02 0.0024 20.6 14.4 115 4-120 3-147 (160)
31 PF12642 TpcC: Conjugative tra 40.2 1.4E+02 0.003 21.5 9.5 89 5-114 140-231 (232)
32 PF12642 TpcC: Conjugative tra 39.4 16 0.00035 26.4 1.2 27 5-31 1-32 (232)
33 KOG0480 DNA replication licens 38.4 21 0.00046 30.8 1.8 75 5-91 74-148 (764)
34 PF05553 DUF761: Cotton fibre 37.2 38 0.00083 18.0 2.1 21 2-22 4-24 (38)
35 COG5073 VID24 Vacuolar import 36.6 21 0.00045 27.0 1.3 70 14-90 57-126 (272)
36 PRK00945 acetyl-CoA decarbonyl 35.9 24 0.00053 25.1 1.5 29 23-54 138-166 (171)
37 TIGR00315 cdhB CO dehydrogenas 33.9 28 0.00062 24.5 1.6 31 21-54 128-158 (162)
38 PF12870 Lumazine_bd: Lumazine 33.1 1.2E+02 0.0025 18.5 4.7 25 10-34 12-37 (111)
39 TIGR02957 SigX4 RNA polymerase 32.7 1.1E+02 0.0024 22.9 4.8 65 7-71 166-242 (281)
40 COG3558 Uncharacterized protei 32.7 13 0.00028 25.3 -0.3 34 21-54 29-62 (154)
41 PF08478 POTRA_1: POTRA domain 32.2 77 0.0017 18.0 3.2 32 45-83 36-67 (69)
42 PF12392 DUF3656: Collagenase 31.3 1.2E+02 0.0025 19.8 4.2 35 41-80 64-98 (122)
43 PF07341 DUF1473: Protein of u 30.7 25 0.00055 24.4 0.9 26 6-31 57-84 (163)
44 cd06479 ACD_HspB7_like Alpha c 29.4 1.3E+02 0.0027 18.4 3.9 26 79-104 32-57 (81)
45 PRK01151 rps17E 30S ribosomal 25.6 72 0.0016 18.6 2.1 18 4-21 9-26 (58)
46 PF01941 AdoMet_Synthase: S-ad 25.3 1.6E+02 0.0035 23.9 4.6 40 48-90 237-276 (396)
47 PF07029 CryBP1: CryBP1 protei 23.6 2.7E+02 0.0058 19.7 5.0 28 61-88 131-158 (161)
48 PF05941 Chordopox_A20R: Chord 22.5 3.8E+02 0.0082 21.3 6.1 100 7-116 172-279 (334)
49 cd06480 ACD_HspB8_like Alpha-c 21.6 1.6E+02 0.0035 18.5 3.3 27 79-105 39-68 (91)
50 PF02197 RIIa: Regulatory subu 21.2 41 0.00089 17.6 0.4 14 9-22 24-37 (38)
51 PF07293 DUF1450: Protein of u 20.7 1.9E+02 0.0042 17.8 3.4 50 38-91 9-60 (78)
52 PF02552 CO_dh: CO dehydrogena 20.6 75 0.0016 22.5 1.8 19 23-41 135-153 (167)
53 cd06477 ACD_HspB3_Like Alpha c 20.6 1.9E+02 0.004 17.8 3.4 26 79-104 31-59 (83)
54 PF11533 DUF3225: Protein of u 20.5 2.8E+02 0.0062 18.7 13.4 110 5-121 11-123 (125)
55 PRK05988 formate dehydrogenase 20.0 1.9E+02 0.0042 20.0 3.8 48 41-89 87-141 (156)
No 1
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=100.00 E-value=3.6e-39 Score=215.92 Aligned_cols=118 Identities=53% Similarity=0.914 Sum_probs=113.2
Q ss_pred ChHHHHHHHHHHHHHhhccChhhhhccccCCCEEEEcC-cccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEE
Q 033259 2 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLV 80 (123)
Q Consensus 2 ~~~~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g-~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI 80 (123)
++++||+.||++||++|+++|+.|++||+++|.|+|+| +.+.|+++|.+.+++||++.++|+|.++||||+ .+++++|
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~-~~~~ili 79 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPT-PSGGVIV 79 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEc-CCCCEEE
Confidence 47899999999999999999999999999999999999 999999999999999998889999999999999 6799999
Q ss_pred EEEEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEEeec
Q 033259 81 FVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 122 (123)
Q Consensus 81 ~V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr~~~ 122 (123)
+|+|.++.++.+ +++|+|+|+|++.+ ++|+|.||+||+++
T Consensus 80 ~V~G~~~~~~~~-~~~F~q~F~L~~~~-~~~~I~nD~fr~~~ 119 (119)
T cd00780 80 MVTGSLKLDEQP-PRKFSQTFVLAPQN-GGYFVLNDIFRFVD 119 (119)
T ss_pred EEEEEEEECCCC-ceeEeEEEEEEecC-CeEEEEeeEEEecC
Confidence 999999999865 89999999999998 99999999999974
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-40 Score=214.54 Aligned_cols=118 Identities=63% Similarity=1.007 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHhhccChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEE
Q 033259 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFV 82 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V 82 (123)
++.+|..|+++||.+||.+|.+|..+|.+.|+|+|+|+.+.|+++|.+++.+|||.+++|.|+++||||+ +++||+|+|
T Consensus 6 ~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QPt-~~g~ilv~V 84 (126)
T KOG2104|consen 6 YEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQPT-PDGGILVMV 84 (126)
T ss_pred HHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcchhhcchHHHHHHHhcCChhhhhceeeecccccC-CCCcEEEEE
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred EEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEEeec
Q 033259 83 SGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 122 (123)
Q Consensus 83 ~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr~~~ 122 (123)
.|+++.++++ +.+|+|.|.|.|+.+|+|++.|||||+.+
T Consensus 85 ~G~Lk~dEd~-~~~FsQvF~L~~n~~~~~~v~ndiFRLn~ 123 (126)
T KOG2104|consen 85 VGQLKLDEDP-ILRFSQVFLLKPNIQGSYYVFNDIFRLNL 123 (126)
T ss_pred eeeeeeccCC-ccceeeEEEEeEcCCCCEEEEeeeEEEec
Confidence 9999999776 99999999999997799999999999975
No 3
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=100.00 E-value=1.1e-32 Score=183.14 Aligned_cols=114 Identities=41% Similarity=0.791 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhhcc-Chhhhhccc-cCCCEEEEcCc-ccccHHHHHHHHhcCCCceeeEEeeEeeeeee-CCCCcEEEE
Q 033259 6 VAKAFVEHYYTTFDA-NRTGLANLY-QEGSMLTFEGQ-KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS-GPAGGMLVF 81 (123)
Q Consensus 6 i~~~Fv~~YY~~l~~-~r~~l~~~Y-~~~s~~~~~g~-~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~-~~~~~ilI~ 81 (123)
||+.||++||+.||+ +|+.|++|| .+.|.++|+|+ ...|+++|.+++.+||...++|.|.++||||+ ..+++++|+
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~i~i~ 80 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGSILIT 80 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSEEEEE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCcEEEE
Confidence 689999999999999 999999999 67788999999 99999999999999997666999999999953 168999999
Q ss_pred EEEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEEe
Q 033259 82 VSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRL 120 (123)
Q Consensus 82 V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr~ 120 (123)
|+|.++.++.+.+++|+|+|+|+|.+ ++|+|.||||||
T Consensus 81 v~G~~~~~~~~~~~~F~q~FvL~~~~-~~~~I~nd~~r~ 118 (118)
T PF02136_consen 81 VTGQFKEDDNPNPRRFSQTFVLVPQN-NGYFIANDIFRF 118 (118)
T ss_dssp EEEEEEETTSEEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred EEeEEEecCCCcccEEEEEEEEEEcC-CEEEEEeeEEEC
Confidence 99999999886569999999999998 999999999997
No 4
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-32 Score=215.41 Aligned_cols=119 Identities=35% Similarity=0.598 Sum_probs=113.4
Q ss_pred CChHHHHHHHHHHHHHhhccChhhhhccccCCCEEEEcCc-----ccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCC
Q 033259 1 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQ-----KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPA 75 (123)
Q Consensus 1 ~~~~~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g~-----~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~ 75 (123)
.+++.||..||++||+.|.+.|+.||+||.++|.+++.|. .++|.++|.+++.+|+++.++.+|.++|+|.+ .+
T Consensus 11 ~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S-~~ 89 (419)
T KOG0116|consen 11 PTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQAS-LE 89 (419)
T ss_pred CCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhh-cc
Confidence 3688999999999999999999999999999999999863 68999999999999999999999999999998 88
Q ss_pred CcEEEEEEEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEEeec
Q 033259 76 GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 122 (123)
Q Consensus 76 ~~ilI~V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr~~~ 122 (123)
+|++|+|+|.++.++.+ .|+|+|||+|+|++ ++|+|+|||||||+
T Consensus 90 ~GvvI~VtG~lt~~~~~-rRkF~QtFfLapq~-~~yfVlNDiFRfvd 134 (419)
T KOG0116|consen 90 KGVVIMVTGYLTNKDGP-RRKFSQTFFLAPQE-KGYFVLNDIFRFVD 134 (419)
T ss_pred CCeEEEEEEEEEeCCCc-ceEEEEEEEEeecC-CceEEEechhhhcc
Confidence 99999999999999987 89999999999999 69999999999997
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.98 E-value=1.5e-32 Score=182.64 Aligned_cols=116 Identities=30% Similarity=0.592 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHhhccChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeC-----CCCc
Q 033259 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSG-----PAGG 77 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~-----~~~~ 77 (123)
+...|++|++.||..+|++|+.|.+||.++|.++|||+++.|++.|.+.+..|| .++|+|.++||||++ .+.+
T Consensus 12 ~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn~v~g~esls~ff~~LP--sS~~qi~~lD~Qpv~dqat~~q~~ 89 (139)
T KOG4353|consen 12 ACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGNPVSGTESLSEFFNMLP--SSEFQINDLDCQPVHDQATGSQTT 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCCcchhHHHHHHHHHhCC--Cccccccccccccchhhcccccce
Confidence 457899999999999999999999999999999999999999999999999999 899999999999984 2457
Q ss_pred EEEEEEEEEEECCCCcceeeEEEEEeeeCCCCcEE----EEceeEEeec
Q 033259 78 MLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFY----VLNDIFRLNY 122 (123)
Q Consensus 78 ilI~V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~----I~nD~fr~~~ 122 (123)
+||+|+|.++++++. +|.|.|||+|.+.. +.|. |.+|+||+.+
T Consensus 90 vLvvvsGtVkFdG~k-~r~F~qt~ll~~e~-~~~k~~~~v~Sd~fr~~d 136 (139)
T KOG4353|consen 90 VLVVVSGTVKFDGNK-QRVFNQTFLLTAED-PPFKTVWKVASDCFRFQD 136 (139)
T ss_pred EEEEEeeeEEEcCCc-cccccceeEEeecC-Cccchhhhhhhhhhhhhh
Confidence 999999999999997 89999999999876 5555 9999999975
No 6
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=99.58 E-value=4.8e-15 Score=103.16 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHhhcc-C----hhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCc
Q 033259 3 PDSVAKAFVEHYYTTFDA-N----RTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGG 77 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~-~----r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ 77 (123)
+.++++.||+.||..||. + ++.|..||.++|.++|||+++.++.+..+.|.+.| ..++|++.++|||.++..++
T Consensus 3 ~tq~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~Pi~~~~~F~~~w~~~p-v~TqH~L~s~D~H~IPGsgt 81 (166)
T PF10429_consen 3 QTQIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGTPIAQPTAFQQTWQQQP-VQTQHQLTSFDCHVIPGSGT 81 (166)
T ss_dssp CCCCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTEEES-HHHHHHHHHCCS---EEEEEEEEEEEEETTTTE
T ss_pred cchhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCccCCCHHHHHHHHHhCc-cceeeeeeeeeeeEeCCCCe
Confidence 457789999999999994 2 46677899999999999999999999999999999 57899999999999977788
Q ss_pred EEEEEEEEEEECCCCcceeeEEEEEeee
Q 033259 78 MLVFVSGNLQLAGEQHALKFSQMFHLMP 105 (123)
Q Consensus 78 ilI~V~G~~~~~~~~~~~~F~qtFvL~~ 105 (123)
++|.|+|.|++++++ +-+-.|+..|.+
T Consensus 82 ~i~N~n~KVRFDEsG-rdk~G~~a~l~~ 108 (166)
T PF10429_consen 82 FIINVNCKVRFDESG-RDKLGEDADLPQ 108 (166)
T ss_dssp EEEEEEEEEEEB-SS-B-TTS-B--TTS
T ss_pred EEEeeeEEEEecCCC-CCCCCCceeecc
Confidence 999999999998776 444555655544
No 7
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=99.40 E-value=2.6e-12 Score=103.78 Aligned_cols=115 Identities=23% Similarity=0.390 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHhhccC-hhhhhccccCCCEEEEcC-----------------------------------cccccHH
Q 033259 3 PDSVAKAFVEHYYTTFDAN-RTGLANLYQEGSMLTFEG-----------------------------------QKIQGSQ 46 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~~-r~~l~~~Y~~~s~~~~~g-----------------------------------~~~~G~~ 46 (123)
..++..+|+++||..+|++ ++.+...|+++|+|+..= ....|..
T Consensus 337 l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~ 416 (585)
T KOG3763|consen 337 LKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGAC 416 (585)
T ss_pred HHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccch
Confidence 4578899999999999985 566668899999988521 0568999
Q ss_pred HHHHHHhcCCCceeeEEeeE--eeeeeeCCCCcEEEEEEEEEEECCC---Cc---ceeeEEEEEeeeCCCCcEEEEceeE
Q 033259 47 NIVAKLTSLPFQQCQHSITT--VDCQPSGPAGGMLVFVSGNLQLAGE---QH---ALKFSQMFHLMPTPQGSFYVLNDIF 118 (123)
Q Consensus 47 ~I~~~l~~lp~~~~~~~i~s--~d~q~~~~~~~ilI~V~G~~~~~~~---~~---~~~F~qtFvL~~~~~~~y~I~nD~f 118 (123)
+|.+.|++|| +|+|++.+ +|..-- ...++.+.|.|.+...+. +. +..|++||++.|.++.+.+|+||.+
T Consensus 417 ~Iv~aLs~LP--kT~Hdl~s~vvDv~~~-~~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~L 493 (585)
T KOG3763|consen 417 DIVVALSALP--KTQHDLDSFVVDVWYQ-TGNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVNDQL 493 (585)
T ss_pred HHHHHHHhCc--cchhhhhhhheeeeec-ccceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEecee
Confidence 9999999999 99999988 465443 457889999999986532 12 2349999999999989999999987
Q ss_pred Ee
Q 033259 119 RL 120 (123)
Q Consensus 119 r~ 120 (123)
-.
T Consensus 494 fi 495 (585)
T KOG3763|consen 494 FI 495 (585)
T ss_pred EE
Confidence 43
No 8
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=99.27 E-value=3.7e-10 Score=72.75 Aligned_cols=112 Identities=31% Similarity=0.488 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhc-cChhhhhccccCCCEEEEcC-----cccccHHHHHHHHhcCCC--ceeeEEeeEeeeeeeCCCCcEE
Q 033259 8 KAFVEHYYTTFD-ANRTGLANLYQEGSMLTFEG-----QKIQGSQNIVAKLTSLPF--QQCQHSITTVDCQPSGPAGGML 79 (123)
Q Consensus 8 ~~Fv~~YY~~l~-~~r~~l~~~Y~~~s~~~~~g-----~~~~G~~~I~~~l~~lp~--~~~~~~i~s~d~q~~~~~~~il 79 (123)
+.|+.+||..+| ++++.|..+|.+++.+.+.+ ....|+++|.+.+..++. ....|.+.+++++..+.+....
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 689999999999 57899999999999999987 578999999999998873 3566677888888873333466
Q ss_pred EEEEEEEEECCC--CcceeeEEEEEeeeCCCCcEEEEceeEEe
Q 033259 80 VFVSGNLQLAGE--QHALKFSQMFHLMPTPQGSFYVLNDIFRL 120 (123)
Q Consensus 80 I~V~G~~~~~~~--~~~~~F~qtFvL~~~~~~~y~I~nD~fr~ 120 (123)
+.+.+.+..... +....+..++.+.+.+ ++|.|.+..+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQG-GGGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeC-CEEEEEEEEEec
Confidence 777888887652 4467899999999985 999999999886
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=98.33 E-value=3.1e-05 Score=50.89 Aligned_cols=113 Identities=15% Similarity=0.274 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHhhcc-ChhhhhccccCCCEEE-EcCcccccHHHHHHHHhcCC---CceeeEEeeEeeeeeeCCCCc
Q 033259 3 PDSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLT-FEGQKIQGSQNIVAKLTSLP---FQQCQHSITTVDCQPSGPAGG 77 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~-~~g~~~~G~~~I~~~l~~lp---~~~~~~~i~s~d~q~~~~~~~ 77 (123)
.++.-+..+..|+..+++ +++.+..+|.+++.+. ..|....|+++|.+.+..+- ...+.+.++....... .++.
T Consensus 2 d~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 80 (128)
T TIGR02246 2 DERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFL-GPDL 80 (128)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEec-CCCE
Confidence 455667889999999997 8999999999999987 66778899999999886531 1233466665555544 3333
Q ss_pred EEEEEEEEEEE--CC-CCcc--eeeEEEEEeeeCCCCcEEEEceeEE
Q 033259 78 MLVFVSGNLQL--AG-EQHA--LKFSQMFHLMPTPQGSFYVLNDIFR 119 (123)
Q Consensus 78 ilI~V~G~~~~--~~-~~~~--~~F~qtFvL~~~~~~~y~I~nD~fr 119 (123)
.. |.+.... .+ .+.. ....-|+++.+.+ |+|.|..+-+.
T Consensus 81 A~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-g~W~I~~~h~s 124 (128)
T TIGR02246 81 AI--VHAIQTITAPGKGRARPDAAVRLTFVAVKRD-GRWLLAADHNT 124 (128)
T ss_pred EE--EEEEEEEEcCCCCCCCCCcceEEEEEEEeeC-CeEEEEeccCC
Confidence 33 4444433 22 1111 1233466676665 99999988654
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=98.22 E-value=7.7e-05 Score=48.32 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcc-ChhhhhccccCCCEEEEcC--cccccHHHHHHHHhc-CC-CceeeEEeeEeeeeeeCCCCcEEEEE
Q 033259 8 KAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTS-LP-FQQCQHSITTVDCQPSGPAGGMLVFV 82 (123)
Q Consensus 8 ~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g--~~~~G~~~I~~~l~~-lp-~~~~~~~i~s~d~q~~~~~~~ilI~V 82 (123)
++++++|++.+.+ +-+.+..+|.+++.+...+ ....|.++|.+.+.. +. .......+..+.++.. ++..++..
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVS--GDVAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEE--TTEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEEC--CCEEEEEE
Confidence 5688999999986 6799999999999887743 567899999987754 11 1367777777777664 45566666
Q ss_pred EEEEEE--CCCCcceeeEEEEEeeeCCCCcEEEEceeEE
Q 033259 83 SGNLQL--AGEQHALKFSQMFHLMPTPQGSFYVLNDIFR 119 (123)
Q Consensus 83 ~G~~~~--~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr 119 (123)
.+.++. ++.+....+-.|+++.+.+ ++|.|+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~r~t~v~~k~~-~~Wki~h~H~S 117 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRGRATFVFRKED-GGWKIVHIHWS 117 (121)
T ss_dssp EEEEEEECTTCEEEEEEEEEEEEEEET-TEEEEEEEEEE
T ss_pred EEEEEEecCCccceeeEEEEEEEEEEC-CEEEEEEEEec
Confidence 666654 3333356688899999987 99999876554
No 11
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=98.00 E-value=6.8e-05 Score=56.49 Aligned_cols=118 Identities=18% Similarity=0.307 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHHhhccChhhhh-ccccCCCEEEE--c-C----cc-cccHHHHHHHHhcCCCceeeE---EeeE--e
Q 033259 2 DPDSVAKAFVEHYYTTFDANRTGLA-NLYQEGSMLTF--E-G----QK-IQGSQNIVAKLTSLPFQQCQH---SITT--V 67 (123)
Q Consensus 2 ~~~~i~~~Fv~~YY~~l~~~r~~l~-~~Y~~~s~~~~--~-g----~~-~~G~~~I~~~l~~lp~~~~~~---~i~s--~ 67 (123)
+.+.+|++|.++||.+|+..+.++. +-+.+|+.+.. + + .. +.|.+++...|.+|..+..-+ .+.+ +
T Consensus 126 ~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G~ 205 (262)
T PF15008_consen 126 PIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSDGV 205 (262)
T ss_pred CHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCCCc
Confidence 5688999999999999999555553 34445555443 2 2 13 389999999999886221111 2222 5
Q ss_pred eeeeeCCCCcEEEEEEEEEEECCCCcceeeEEEEEeeeC--CCCcEEEEceeEEee
Q 033259 68 DCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPT--PQGSFYVLNDIFRLN 121 (123)
Q Consensus 68 d~q~~~~~~~ilI~V~G~~~~~~~~~~~~F~qtFvL~~~--~~~~y~I~nD~fr~~ 121 (123)
.|..+ +.|-++|.|.|++-.++.= ---|-|.|=|.+. .++.|.|.+=-+|+.
T Consensus 206 k~~~~-phGlV~V~v~GTvH~~~~C-lGiFEq~FGLiRdP~~~N~WKiK~~~l~i~ 259 (262)
T PF15008_consen 206 KGRIS-PHGLVLVAVCGTVHRDNTC-LGIFEQIFGLIRDPFAENNWKIKFVNLRIR 259 (262)
T ss_pred ceEEc-CCCcEEEEEeeeEecCCce-EeehhhhhhcccCccccCceeEEEEEEEEE
Confidence 56555 5677999999999877543 4569999999865 359999998777764
No 12
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=97.93 E-value=0.00034 Score=44.01 Aligned_cols=102 Identities=19% Similarity=0.207 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcc-ChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEEEEEE
Q 033259 9 AFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQ 87 (123)
Q Consensus 9 ~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~ 87 (123)
...+.|...+.+ +.+.+..+|+|+..+...+....|++++.+.+..-+......++.....++. ++..++.....++
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~--gd~a~~~~~~~~~ 80 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVL--GDTAVVRGRWTFT 80 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE--TTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 456788888876 6899999999999999877766799999999987443345556666777776 3444555555555
Q ss_pred ECCCC--cceeeEEEEEeeeCCCCcEEE
Q 033259 88 LAGEQ--HALKFSQMFHLMPTPQGSFYV 113 (123)
Q Consensus 88 ~~~~~--~~~~F~qtFvL~~~~~~~y~I 113 (123)
....+ .....-.+-++.+.+ |+|.|
T Consensus 81 ~~~~g~~~~~~~~~~~v~~k~~-g~W~i 107 (107)
T PF14534_consen 81 WRGDGEPVTIRGRFTSVWKKQD-GKWRI 107 (107)
T ss_dssp ETTTTEEEEEEEEEEEEEEEET-TEEEE
T ss_pred EecCCceEEEEEEEEEEEEEeC-CEEEC
Confidence 54432 123455566677765 89976
No 13
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=97.49 E-value=0.0017 Score=40.13 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=52.8
Q ss_pred HHHHHHhhcc-ChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCC--CceeeEEeeEeeeeeeCCCCcEEEEEEEEEE
Q 033259 11 VEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLP--FQQCQHSITTVDCQPSGPAGGMLVFVSGNLQ 87 (123)
Q Consensus 11 v~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp--~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~ 87 (123)
|+.||..+++ +.+.+..+|++++.+..++.+..|+++|.+.+..+. +....+++..+ -. .++.+++......+
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~gd~v~~~~~~~~~ 76 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDI--FA--DGDRVVVEWTVTGT 76 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE--EE--ETTEEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEE--EE--cCCEEEEEEEEEEE
Confidence 6889999987 579999999999999998878999999999887754 12444444444 22 23445555444443
Q ss_pred EC
Q 033259 88 LA 89 (123)
Q Consensus 88 ~~ 89 (123)
..
T Consensus 77 ~~ 78 (102)
T PF12680_consen 77 TP 78 (102)
T ss_dssp ET
T ss_pred Ec
Confidence 33
No 14
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=97.06 E-value=0.015 Score=37.83 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEc--CcccccHHHHHHHHhcCC
Q 033259 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSLP 56 (123)
Q Consensus 6 i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~--g~~~~G~~~I~~~l~~lp 56 (123)
--+..++.||..+++ +.+.+..+|.+++.+.+. +.+..|+++|.+.+..++
T Consensus 4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~ 57 (122)
T cd00781 4 EMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSL 57 (122)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHh
Confidence 346778999999987 789999999999999753 346899999999998876
No 15
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=97.02 E-value=0.018 Score=39.04 Aligned_cols=110 Identities=9% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhhc-cChhhhhccccCC-CEEEE--cCcccccHHHHHHHHhcCCCc---eeeEEeeEeeeeeeCCCC
Q 033259 4 DSVAKAFVEHYYTTFD-ANRTGLANLYQEG-SMLTF--EGQKIQGSQNIVAKLTSLPFQ---QCQHSITTVDCQPSGPAG 76 (123)
Q Consensus 4 ~~i~~~Fv~~YY~~l~-~~r~~l~~~Y~~~-s~~~~--~g~~~~G~~~I~~~l~~lp~~---~~~~~i~s~d~q~~~~~~ 76 (123)
++|++-|- ++-..+. .|++...++|+++ +.+-. .|++..|.+.|...|..+..+ ..+..|..-..+-. .++
T Consensus 3 ~eI~~l~~-~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~l-g~~ 80 (128)
T PF08332_consen 3 QEIAALFD-RWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLL-GDN 80 (128)
T ss_dssp HHHHHHHH-HHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEE-STT
T ss_pred HHHHHHHH-HHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEc-CCC
Confidence 45555554 4445554 5899999999999 88864 578999999999988743322 23334555555555 344
Q ss_pred cEEEEEEEEEEEC-CCCcce--eeEEEEEeeeCCCCcEEEEce
Q 033259 77 GMLVFVSGNLQLA-GEQHAL--KFSQMFHLMPTPQGSFYVLND 116 (123)
Q Consensus 77 ~ilI~V~G~~~~~-~~~~~~--~F~qtFvL~~~~~~~y~I~nD 116 (123)
.-++.=.=.++.. .++.++ .=-.||+-.+.+ |+|.|+.-
T Consensus 81 ~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~-g~W~ivhh 122 (128)
T PF08332_consen 81 AAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRD-GKWKIVHH 122 (128)
T ss_dssp EEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEET-TEEEEEEE
T ss_pred EEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeC-CeEEEEEE
Confidence 4444333334443 333233 455788888887 99999753
No 16
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=97.02 E-value=0.032 Score=36.49 Aligned_cols=104 Identities=18% Similarity=0.317 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEc--Cc-ccccHHHHHHHHhcC-----CCceeeEEeeEeeeeeeCCC
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQ-KIQGSQNIVAKLTSL-----PFQQCQHSITTVDCQPSGPA 75 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~--g~-~~~G~~~I~~~l~~l-----p~~~~~~~i~s~d~q~~~~~ 75 (123)
+..++-|+.|+..+.+ +...|.+.++|++.+... |. .....++..+.+.+- +.......|.++|...
T Consensus 4 ~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---- 79 (116)
T PF12893_consen 4 AAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---- 79 (116)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC----
Confidence 4456778899999986 789999999999987543 32 445567777777642 2235556666666532
Q ss_pred CcEEEEEEEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEE
Q 033259 76 GGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFR 119 (123)
Q Consensus 76 ~~ilI~V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr 119 (123)
+.-.+.|.=.+. ...|...|.|.+.+ |+|.|+|=+|+
T Consensus 80 ~~A~a~v~~~~~------~~~~~d~~~L~K~d-g~WkIv~k~~~ 116 (116)
T PF12893_consen 80 DVASAKVEYEFP------GFWFVDYFTLVKTD-GGWKIVSKVYH 116 (116)
T ss_dssp TEEEEEEEEEEE------TEEEEEEEEEEEET-TEEEEEEEEEE
T ss_pred CEEEEEEEEEEC------CCceEEEEEEEEEC-CEEEEEEEecC
Confidence 233344443332 35799999999987 99999998874
No 17
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=96.65 E-value=0.062 Score=34.81 Aligned_cols=68 Identities=21% Similarity=0.390 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcCc---ccccHHHHHHHHhcC--CCceeeEEeeEeeeeee
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ---KIQGSQNIVAKLTSL--PFQQCQHSITTVDCQPS 72 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~---~~~G~~~I~~~l~~l--p~~~~~~~i~s~d~q~~ 72 (123)
+.-+.++..|...+|. +.+.+..++.+++.+.+.+- ...|.++|.+.+... +...+.|.+.+......
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~d 80 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVD 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEc
Confidence 4557889999999997 68999999999999999874 799999999988764 22377888777555433
No 18
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=93.67 E-value=1 Score=30.89 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=60.3
Q ss_pred Hhhcc-ChhhhhccccCCCEEEE-cCcccccHHHHHHHHhcCC-CceeeEEeeEeeeeeeCCCCcEEEEEEEEEEECC--
Q 033259 16 TTFDA-NRTGLANLYQEGSMLTF-EGQKIQGSQNIVAKLTSLP-FQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAG-- 90 (123)
Q Consensus 16 ~~l~~-~r~~l~~~Y~~~s~~~~-~g~~~~G~~~I~~~l~~lp-~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~~~~-- 90 (123)
..++. +=+.+..+|.+++.+.- .|....|+++|.+.+...- .....++.+-.+.|.. . .|=+..++|.....+
T Consensus 21 ~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~-~-~GD~a~~~~~~~~~~~~ 98 (137)
T COG4319 21 AAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVH-E-SGDVAFVTALLLLTGTK 98 (137)
T ss_pred HHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeee-c-cCCEEEEEEeeeeeccC
Confidence 34543 56888899999998654 4889999999999886431 0122233333444432 1 111223444444332
Q ss_pred ---CCcceeeEEEEEeeeCCCCcEEEEce
Q 033259 91 ---EQHALKFSQMFHLMPTPQGSFYVLND 116 (123)
Q Consensus 91 ---~~~~~~F~qtFvL~~~~~~~y~I~nD 116 (123)
.+....---|.++++..+|+|+|.-|
T Consensus 99 ~dg~~~~~~~Rat~v~rK~~dg~Wk~~~d 127 (137)
T COG4319 99 KDGPPADLAGRATYVFRKEADGGWKLAHD 127 (137)
T ss_pred CCCcchhheeeeEEEEEEcCCCCEEEEEe
Confidence 22224555688899998789999988
No 19
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=93.52 E-value=1.6 Score=29.70 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHhhccChhhhhccccCCCEEE--EcCcccccHHHHHHHHhcC
Q 033259 3 PDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLT--FEGQKIQGSQNIVAKLTSL 55 (123)
Q Consensus 3 ~~~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~--~~g~~~~G~~~I~~~l~~l 55 (123)
..+||.-|=.+==.+...+|..+...|.+++.+. ...+.-..+.+|.+.+...
T Consensus 36 ~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLLPT~Sn~vR~s~~ei~DYF~~F 90 (156)
T COG4875 36 EREVAALFDRWNAALTTGDPNKVAANYAPDAVLLPTMSNQVRSSRSEILDYFSHF 90 (156)
T ss_pred HHHHHHHHHHHHhhhhcCChHHHHhhcCCceEeecccccccccCHHHHHHHHHHH
Confidence 4578887766655556669999999999999874 5666778889999887653
No 20
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=92.71 E-value=1.8 Score=28.01 Aligned_cols=55 Identities=13% Similarity=0.305 Sum_probs=41.0
Q ss_pred HHHHHHHhhcc-ChhhhhccccCCCEEEEcC--cccccHHHHHHHHhc----CCCceeeEEeeE
Q 033259 10 FVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--QKIQGSQNIVAKLTS----LPFQQCQHSITT 66 (123)
Q Consensus 10 Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g--~~~~G~~~I~~~l~~----lp~~~~~~~i~s 66 (123)
-++.||..+++ +.+.+..+|++++.+...+ .+..|+++|.+.+.. +| ..++++..
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~~~i~~ 64 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFP--DLLVDVVV 64 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCc--hhhceeEE
Confidence 46789999987 7899999999999887653 356779999886654 44 44445443
No 21
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=77.43 E-value=11 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.373 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcC--------cccccHHHHHHHHhcCC
Q 033259 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTSLP 56 (123)
Q Consensus 6 i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g--------~~~~G~~~I~~~l~~lp 56 (123)
.....|..|+..+.. +.+.|..++++++.+.-+| .++.|++.|...+..+.
T Consensus 172 ~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~ 231 (293)
T PRK09636 172 EGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLA 231 (293)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHh
Confidence 356789999999986 7899999999999998655 24789999999887654
No 22
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=75.95 E-value=11 Score=28.62 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEc--CcccccHHHHHHHHhcC
Q 033259 6 VAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFE--GQKIQGSQNIVAKLTSL 55 (123)
Q Consensus 6 i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~--g~~~~G~~~I~~~l~~l 55 (123)
....-++.||..+++ +.+.|..++++++.+... +.++.|+++|...+..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHh
Confidence 446789999999997 789999999999998865 35799999999999887
No 23
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=73.11 E-value=2.7 Score=28.86 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred hhcc-ChhhhhccccCCCEEEEcCcccccHHHHHHHHhc
Q 033259 17 TFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (123)
Q Consensus 17 ~l~~-~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~ 54 (123)
..++ +|+.+..-|.++|...-...-+.|+++|...|+.
T Consensus 22 aWNsrdP~~ValaYT~Ds~WRNR~eF~~GR~~I~~FLtr 60 (143)
T PF07080_consen 22 AWNSRDPEKVALAYTPDSVWRNRDEFLTGREEIVAFLTR 60 (143)
T ss_dssp HHTTT-HHHHHTTEEEEEEEEETTEEE-SHHHHHHHHHH
T ss_pred ccccCChhHheeccCCCCcccCcccccCcHHHHHHHHHH
Confidence 3443 7999999999999987777889999999998874
No 24
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=72.56 E-value=7 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcCc--ccccHHHHHHHHhcC
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ--KIQGSQNIVAKLTSL 55 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~--~~~G~~~I~~~l~~l 55 (123)
+.-...|+.||..+++ +.+.|..++++++.+...+. ++.|++++.+.+..+
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhh
Confidence 4456789999999987 78999999999998877643 499999999999886
No 25
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=71.92 E-value=5.9 Score=25.60 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=38.3
Q ss_pred HHHHHhhcc-ChhhhhccccCCCEEEEcC-cccccHHHHHHHHh----cCCCceeeEEeeEe
Q 033259 12 EHYYTTFDA-NRTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLT----SLPFQQCQHSITTV 67 (123)
Q Consensus 12 ~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g-~~~~G~~~I~~~l~----~lp~~~~~~~i~s~ 67 (123)
+.|...+++ +.+.+..+|+++...-..+ ....|++++.+.+. .+| +.++++..+
T Consensus 5 ~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afP--D~~~~i~~~ 64 (126)
T PF07366_consen 5 RFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFP--DLRFEIEDV 64 (126)
T ss_dssp HHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHST--TTEEEEEEE
T ss_pred HHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEE
Confidence 345556666 6899999999998877655 68889988877654 567 666666654
No 26
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=71.03 E-value=29 Score=23.46 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcCc------ccccHHHHHHHHhcCC
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ------KIQGSQNIVAKLTSLP 56 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~------~~~G~~~I~~~l~~lp 56 (123)
.=+.+-|++||..+.+ +...+..+++++....+.|. ...|.+.+...+..+|
T Consensus 4 ~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~ 62 (133)
T COG3631 4 MDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLP 62 (133)
T ss_pred chhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhCh
Confidence 3456779999999987 78999999999999887764 3346666677777777
No 27
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=60.21 E-value=25 Score=20.36 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhccChhhhhccccCCCEEEEcCcccccHHHHHHHHhcC
Q 033259 7 AKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSL 55 (123)
Q Consensus 7 ~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~l 55 (123)
-+.-+..|...+-.+.+.+.++|.+.|.+.-. .+.+.+...+..|
T Consensus 10 ne~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~----~~~~~l~~~L~~L 54 (64)
T smart00593 10 NEKLLSSWLNLLLSDEELLSKYYEPWAFLRDP----EEGEQLLGLLVGL 54 (64)
T ss_pred HHhHHHHHHHHHHhChHHHHHhCCCCceeeCh----hHHHHHHHHHhCc
Confidence 45567788888888889999999999998531 2344455555554
No 28
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=45.92 E-value=14 Score=24.07 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=21.9
Q ss_pred HHHHHHhhccChhhhhccccCCCEEEE
Q 033259 11 VEHYYTTFDANRTGLANLYQEGSMLTF 37 (123)
Q Consensus 11 v~~YY~~l~~~r~~l~~~Y~~~s~~~~ 37 (123)
+..|...+-.+++.+.++|.++|.|.-
T Consensus 82 L~~~l~~l~~~~~~l~~~Y~~~A~l~~ 108 (133)
T PF02759_consen 82 LSSWLQLLLSDPKLLRKYYEPWAFLRD 108 (133)
T ss_dssp HHHHHHHHCTTHHHHCCCB-TTSCTTS
T ss_pred HHHHHHHHHhcchHHcCccCCcceeeC
Confidence 457888888899999999999998844
No 29
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=43.17 E-value=1e+02 Score=20.70 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHHhhccC-hhhhhccccCCCEEEEcC-cccccHHHHHHHHhcC
Q 033259 2 DPDSVAKAFVEHYYTTFDAN-RTGLANLYQEGSMLTFEG-QKIQGSQNIVAKLTSL 55 (123)
Q Consensus 2 ~~~~i~~~Fv~~YY~~l~~~-r~~l~~~Y~~~s~~~~~g-~~~~G~~~I~~~l~~l 55 (123)
+++++.+.|++.+- ..+ ...+..+..+++...--+ .++.|+++|.+.|..+
T Consensus 2 ~~~~vV~~F~~a~~---~~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~ 54 (125)
T PF07858_consen 2 TPEEVVRAFLAALE---DRDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGF 54 (125)
T ss_dssp HHHHHHHHHHHHHH---HT-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHH---cCCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHH
Confidence 35666666666552 224 345565666665543223 4789999999999887
No 30
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=41.31 E-value=1.1e+02 Score=20.59 Aligned_cols=115 Identities=10% Similarity=0.069 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcCc------------c-----cccHHHHHHHHhc---------CC
Q 033259 4 DSVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQ------------K-----IQGSQNIVAKLTS---------LP 56 (123)
Q Consensus 4 ~~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~------------~-----~~G~~~I~~~l~~---------lp 56 (123)
.....+|+..|=..+|. +-+....+|.+++.+..... . ..|+..+.+.+.+ -|
T Consensus 3 ~~~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~~ 82 (160)
T cd00667 3 QAEVEQFLYREARLLDDRRWDEWLALFAEDCHYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSEDP 82 (160)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHhhccccEEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccCC
Confidence 44567999999999996 56889999999998765321 1 2466666665332 35
Q ss_pred CceeeEEeeEeeeeeeCCCCcEEEEEEEEEEEC-CCCcceeeEEE--EEeeeCCCCcEEEEceeEEe
Q 033259 57 FQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLA-GEQHALKFSQM--FHLMPTPQGSFYVLNDIFRL 120 (123)
Q Consensus 57 ~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~~~-~~~~~~~F~qt--FvL~~~~~~~y~I~nD~fr~ 120 (123)
...++|-|+.+-.... .++.+.+...-.+... ..+.+.-|.=. -.+...+ ++|.|..=..++
T Consensus 83 ~~~~rH~vsn~~i~~~-~~d~a~~~s~~~v~~~~~~~~~~~~~g~~~d~~~r~~-~~wri~~R~~~~ 147 (160)
T cd00667 83 PSRTRHLVSNVRVLEG-DGGEIEVRSNFVVVRTRLDGESDVFAGGRYDDLRRSE-DGLRIASRRVVL 147 (160)
T ss_pred CCcceEEEccEEEEec-CCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEEcC-CeEEEEEEEEEE
Confidence 4578899988766554 2333333322222211 11112222221 1244445 788887765554
No 31
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=40.22 E-value=1.4e+02 Score=21.49 Aligned_cols=89 Identities=16% Similarity=0.368 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEE
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVS 83 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~ 83 (123)
+-...|++.|++.+-+ +..+|.++-.+.+.+-.+|. ++ .-.+|.++-.-.. .++..+.|.
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~---------------~~--~~~~v~~~~~~~~--~~~~~~~v~ 200 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA---------------PY--KFVKVDDIKVYKT--KDKGRVVVQ 200 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT------------------------S--EEEEEEEEEEEEE--ETTEEEEE-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC---------------ce--EEEeeeeEEeecC--CCCcEEEEE
Confidence 4667899999999966 55889888888665422221 10 1234554444333 223333333
Q ss_pred EEEEECCCCcceeeEEEEEe--eeCCCCcEEEE
Q 033259 84 GNLQLAGEQHALKFSQMFHL--MPTPQGSFYVL 114 (123)
Q Consensus 84 G~~~~~~~~~~~~F~qtFvL--~~~~~~~y~I~ 114 (123)
+++..+........++|.| .+.+ |+|+|.
T Consensus 201 -tVt~~~~~t~~~~~~~y~LtL~~~~-~~w~V~ 231 (232)
T PF12642_consen 201 -TVTFKDPGTKATLTQQYTLTLTKRG-GRWYVT 231 (232)
T ss_dssp --EEEEEEETTEEEEEEEEEEEEEET-TEEEEE
T ss_pred -EEEEEECCCCcEEEEEEEEEEEEcC-CEEEEe
Confidence 3443322112345555544 4555 999985
No 32
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=39.41 E-value=16 Score=26.45 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH-----hhccChhhhhccccC
Q 033259 5 SVAKAFVEHYYT-----TFDANRTGLANLYQE 31 (123)
Q Consensus 5 ~i~~~Fv~~YY~-----~l~~~r~~l~~~Y~~ 31 (123)
+.|+.|+..||+ ..+++.+.|.+||..
T Consensus 1 ~fa~~Fv~~Y~t~~~~~~~~~r~~~L~~y~~~ 32 (232)
T PF12642_consen 1 SFAQDFVKEYLTKSDDEAPEEREARLAPYLTS 32 (232)
T ss_dssp HHHHHHHHHHT--B-TTGHHHHHHHHTTTS-H
T ss_pred CHHHHHHHHHcCCCCccChHHHHHHHHHHhcc
Confidence 358999999999 555567889999865
No 33
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=38.38 E-value=21 Score=30.80 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhccChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEEE
Q 033259 5 SVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSG 84 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~G 84 (123)
.++.....+||..+----..++++-.+ |.++...-...|.-.+.++| +.|.|..+++-.+ |-|+.++|
T Consensus 74 ~la~~l~~~~~r~~p~m~~av~~~l~d-----~~~~~~~~~~~~~v~f~nlp---~~~~irdlra~~i----G~Lv~isG 141 (764)
T KOG0480|consen 74 NLATALEENYYRVLPCMCRAVHKVLKD-----WSTNSGALVKKIYVRFYNLP---TRHKIRDLRAARI----GKLVRISG 141 (764)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHc-----ccccccccceeEEEEEeccc---cccccccccHhhh----cceEEEEE
Confidence 345555566666654323444443333 44444444445555666777 3477777766554 57888999
Q ss_pred EEEECCC
Q 033259 85 NLQLAGE 91 (123)
Q Consensus 85 ~~~~~~~ 91 (123)
+|..-..
T Consensus 142 tVvRts~ 148 (764)
T KOG0480|consen 142 TVVRTSP 148 (764)
T ss_pred EEEEeec
Confidence 8886554
No 34
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=37.24 E-value=38 Score=17.99 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHHhhccCh
Q 033259 2 DPDSVAKAFVEHYYTTFDANR 22 (123)
Q Consensus 2 ~~~~i~~~Fv~~YY~~l~~~r 22 (123)
+.+.-|+.|+..+|.-+--.+
T Consensus 4 evd~rAe~FI~~f~~qlrlqr 24 (38)
T PF05553_consen 4 EVDRRAEEFIAKFREQLRLQR 24 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999886543
No 35
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=36.61 E-value=21 Score=27.02 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=43.3
Q ss_pred HHHhhccChhhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEEEEEEECC
Q 033259 14 YYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAG 90 (123)
Q Consensus 14 YY~~l~~~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~~~~ 90 (123)
||..-.+++.-+..-|...+-+.++|-.+.|.+ ++..|.-.+..+|..+|.+-- .+-++ =.++|++...+
T Consensus 57 ~~~~~~kn~~~~~~s~~~~~~~Lr~G~qF~G~Q-----is~~~~~~v~v~i~~Vdl~~k-d~~sl-~~l~G~l~i~~ 126 (272)
T COG5073 57 YYMIRHKNKRRLFSSYTRRSGFLRNGAQFGGVQ-----ISGYPPLTVEVNIDTVDLPKK-DDYSL-PHLCGTLNIQN 126 (272)
T ss_pred cceecccCceEeeeeccchhhhccCccccccEe-----ccCCcceEEEEEEEEEecccc-ccccc-cceeeEEEEec
Confidence 333333444444455555556667777777766 556664467778888888663 23333 77888888754
No 36
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=35.93 E-value=24 Score=25.06 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=19.9
Q ss_pred hhhhccccCCCEEEEcCcccccHHHHHHHHhc
Q 033259 23 TGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (123)
Q Consensus 23 ~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~ 54 (123)
-.|-++|+|+|.+|+.+-. .++..+.|.+
T Consensus 138 ~~~~~~y~~~a~~s~~~~~---~~~~~~~l~~ 166 (171)
T PRK00945 138 ITIDRYYHPNADMSFPNLS---KEEYLEYLDE 166 (171)
T ss_pred EEecCCcCCCCceecCCCC---HHHHHHHHHH
Confidence 4566999999999997653 4444444443
No 37
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=33.94 E-value=28 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=21.0
Q ss_pred ChhhhhccccCCCEEEEcCcccccHHHHHHHHhc
Q 033259 21 NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (123)
Q Consensus 21 ~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~ 54 (123)
..-.|-++|+|+|.+|+..-. .++..+.|.+
T Consensus 128 ~~i~l~~~y~pnA~~Sf~n~~---~~~~~~~l~~ 158 (162)
T TIGR00315 128 VTIAIDKYYQPNADYSFPNLS---KDEYLDYLRK 158 (162)
T ss_pred EEEEecCCCCCCCceeccccC---HHHHHHHHHH
Confidence 344566999999999996543 4555555543
No 38
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=33.10 E-value=1.2e+02 Score=18.48 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHHHHHHhhcc-ChhhhhccccCCCE
Q 033259 10 FVEHYYTTFDA-NRTGLANLYQEGSM 34 (123)
Q Consensus 10 Fv~~YY~~l~~-~r~~l~~~Y~~~s~ 34 (123)
-++.||..+.+ +-+....+..++..
T Consensus 12 ~v~~f~~al~~gd~~~a~~~~~~~~~ 37 (111)
T PF12870_consen 12 VVKNFFDALKNGDYEKAYAYLSPESR 37 (111)
T ss_dssp HHHHHHHHHCTT-HHHHHHTB--TT-
T ss_pred HHHHHHHHHHcCCHHHHHHhhCcccc
Confidence 36677777765 66777776666544
No 39
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=32.72 E-value=1.1e+02 Score=22.86 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcc-ChhhhhccccCCCEEEEcC--------cccccHHHHHHHHhcCCCc---eeeEEeeEeeeee
Q 033259 7 AKAFVEHYYTTFDA-NRTGLANLYQEGSMLTFEG--------QKIQGSQNIVAKLTSLPFQ---QCQHSITTVDCQP 71 (123)
Q Consensus 7 ~~~Fv~~YY~~l~~-~r~~l~~~Y~~~s~~~~~g--------~~~~G~~~I~~~l~~lp~~---~~~~~i~s~d~q~ 71 (123)
....+..|-..+.. +.+.|..+-++++.+.-+| .++.|.+.|...+..+.-. ........++.+|
T Consensus 166 ~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~~~vnG~p 242 (281)
T TIGR02957 166 SRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDPVDVNGQP 242 (281)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEEEEECCCc
Confidence 45788888888876 7899999999999998653 3689999999987654310 2233444455555
No 40
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.69 E-value=13 Score=25.26 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=27.9
Q ss_pred ChhhhhccccCCCEEEEcCcccccHHHHHHHHhc
Q 033259 21 NRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTS 54 (123)
Q Consensus 21 ~r~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~ 54 (123)
+|..+.--|.++|...-....++|+++|.+.|..
T Consensus 29 dp~kv~layt~ds~wrnraef~~gre~i~~fl~r 62 (154)
T COG3558 29 DPAKVALAYTEDSFWRNRAEFFQGREKIQEFLTR 62 (154)
T ss_pred ChhheeeeeccchhhhhHHHHHccHHHHHHHHHh
Confidence 6888888999998765556678999999998864
No 41
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=32.20 E-value=77 Score=17.99 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEE
Q 033259 45 SQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVS 83 (123)
Q Consensus 45 ~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~ 83 (123)
.+++.+.+.++| .|.++..... ..+.+.|.|.
T Consensus 36 ~~~~~~~l~~~p------~V~~v~V~r~-~P~~l~I~V~ 67 (69)
T PF08478_consen 36 LKKIEQRLEKLP------WVKSVSVSRR-FPNTLEIKVK 67 (69)
T ss_dssp HHHHHHCCCCTT------TEEEEEEEEE-TTTEEEEEEE
T ss_pred HHHHHHHHHcCC------CEEEEEEEEe-CCCEEEEEEE
Confidence 467777777778 5666666666 5667877764
No 42
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=31.25 E-value=1.2e+02 Score=19.76 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=27.5
Q ss_pred ccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEE
Q 033259 41 KIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLV 80 (123)
Q Consensus 41 ~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI 80 (123)
.....+.|.+.|.++. .|-+.+..+++.. +++++|
T Consensus 64 ~p~~~e~i~~ql~KlG--~T~F~~~~i~i~~---~~~lFl 98 (122)
T PF12392_consen 64 RPLDEERIRKQLSKLG--NTPFELENIEIDL---DEGLFL 98 (122)
T ss_pred CccCHHHHHHHHHhhC--CCcEEEEEEEEEc---CCCEEE
Confidence 4457799999999999 8999999998873 344544
No 43
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=30.69 E-value=25 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhccChhhh--hccccC
Q 033259 6 VAKAFVEHYYTTFDANRTGL--ANLYQE 31 (123)
Q Consensus 6 i~~~Fv~~YY~~l~~~r~~l--~~~Y~~ 31 (123)
|...|+..||..++++|+-. .+.|-+
T Consensus 57 Is~~FlDEFY~ILn~nR~y~s~YK~~L~ 84 (163)
T PF07341_consen 57 ISPGFLDEFYEILNQNREYSSLYKYYLP 84 (163)
T ss_pred cCHhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56789999999999988543 344443
No 44
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=29.38 E-value=1.3e+02 Score=18.44 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=16.9
Q ss_pred EEEEEEEEEECCCCcceeeEEEEEee
Q 033259 79 LVFVSGNLQLAGEQHALKFSQMFHLM 104 (123)
Q Consensus 79 lI~V~G~~~~~~~~~~~~F~qtFvL~ 104 (123)
.++|+|+-+.........|+++|.|-
T Consensus 32 ~L~I~ger~~~~~~~~g~F~R~~~LP 57 (81)
T cd06479 32 QIEVHAEKLASDGTVMNTFTHKCQLP 57 (81)
T ss_pred EEEEEEEEeccCCCEEEEEEEEEECC
Confidence 55667876533322247899999883
No 45
>PRK01151 rps17E 30S ribosomal protein S17e; Validated
Probab=25.64 E-value=72 Score=18.60 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhccC
Q 033259 4 DSVAKAFVEHYYTTFDAN 21 (123)
Q Consensus 4 ~~i~~~Fv~~YY~~l~~~ 21 (123)
..+|+..++.||..|..|
T Consensus 9 Kr~a~~lieky~~~ft~D 26 (58)
T PRK01151 9 KRTAEELLEKYPDLFTTD 26 (58)
T ss_pred HHHHHHHHHHhHHHhccc
Confidence 468999999999999765
No 46
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=25.26 E-value=1.6e+02 Score=23.85 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=27.6
Q ss_pred HHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEEEEEEEEECC
Q 033259 48 IVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLAG 90 (123)
Q Consensus 48 I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~~~~ 90 (123)
+.+...++...++...|.+.|. + ..+++-++|+|+-...+
T Consensus 237 v~~~a~~~~~~~v~v~iNt~D~-~--~~~~~YLTvtGTSAE~G 276 (396)
T PF01941_consen 237 VEDYAAKYTDRDVEVHINTADD-P--EEGGVYLTVTGTSAEMG 276 (396)
T ss_pred HHHHHHHhcCCceEEEEECCCC-C--CCCcEEEEeceeecccc
Confidence 3334444455577778888882 2 46889999999988754
No 47
>PF07029 CryBP1: CryBP1 protein; InterPro: IPR009751 This family consists of several CryBP1 like proteins from Bacillus thuringiensis and Paenibacillus popilliae. Members of this family are thought to be involved in the overall toxicity of the bacteria to their hosts [,].
Probab=23.58 E-value=2.7e+02 Score=19.70 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=20.3
Q ss_pred eEEeeEeeeeeeCCCCcEEEEEEEEEEE
Q 033259 61 QHSITTVDCQPSGPAGGMLVFVSGNLQL 88 (123)
Q Consensus 61 ~~~i~s~d~q~~~~~~~ilI~V~G~~~~ 88 (123)
...+..++.+|...+.+=+|.++|.|++
T Consensus 131 ~V~v~dl~v~p~~e~~c~~vkitG~F~f 158 (161)
T PF07029_consen 131 NVVVCDLQVKPIQEDDCQFVKITGKFQF 158 (161)
T ss_pred EEEEEEeEEEEcccCCceEEEEEEEEEE
Confidence 3456677888874456688999998875
No 48
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=22.49 E-value=3.8e+02 Score=21.28 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhccCh-hhhhccccCCCEEEEcCcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCc---EEEEE
Q 033259 7 AKAFVEHYYTTFDANR-TGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGG---MLVFV 82 (123)
Q Consensus 7 ~~~Fv~~YY~~l~~~r-~~l~~~Y~~~s~~~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~---ilI~V 82 (123)
+..|.+.||..+...= ..+..||-..=++...|... ..|.+.. + .+-..|++++--++ .++. .+|+-
T Consensus 172 ~~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~~~---R~viDf~---~--~~y~~Vk~I~Le~i-~~n~~~P~iiT~ 242 (334)
T PF05941_consen 172 DTIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGVSR---RNVIDFY---K--KEYVCVKSIELEQI-GDNRFLPKIITK 242 (334)
T ss_pred CcccchhHHHHHHHHHHhhhhcccceeEEEEecCcch---hhhhhhc---c--cceEEEEEEEEEEe-cCCeeeeEEEee
Confidence 3568899999998743 33355665544677777432 2344432 2 44557888888777 4443 35666
Q ss_pred EEEEE-ECCCC---cceeeEEEEEeeeCCCCcEEEEce
Q 033259 83 SGNLQ-LAGEQ---HALKFSQMFHLMPTPQGSFYVLND 116 (123)
Q Consensus 83 ~G~~~-~~~~~---~~~~F~qtFvL~~~~~~~y~I~nD 116 (123)
.|..- ..+-. ..+-+.-+||..+.. +.+.|+.|
T Consensus 243 ~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk-~~~~iL~d 279 (334)
T PF05941_consen 243 SGDRVLVRDVDHLIRSRARVGSFVVVKKK-KNFLILVD 279 (334)
T ss_pred cCCEEEEcchhHHhHhhhccceEEEEEEe-ceEEEEcc
Confidence 66554 44322 146677888888776 77777754
No 49
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=21.57 E-value=1.6e+02 Score=18.49 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=18.2
Q ss_pred EEEEEEEEEECC-C--CcceeeEEEEEeee
Q 033259 79 LVFVSGNLQLAG-E--QHALKFSQMFHLMP 105 (123)
Q Consensus 79 lI~V~G~~~~~~-~--~~~~~F~qtFvL~~ 105 (123)
.|+|+|.-.... + -..+.|+|+|.|-.
T Consensus 39 ~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~ 68 (91)
T cd06480 39 FVEVSGKHEEQQKEGGIVSKNFTKKIQLPP 68 (91)
T ss_pred EEEEEEEECcccCCCCEEEEEEEEEEECCC
Confidence 477888766542 2 12588999999853
No 50
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=21.19 E-value=41 Score=17.62 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.8
Q ss_pred HHHHHHHHhhccCh
Q 033259 9 AFVEHYYTTFDANR 22 (123)
Q Consensus 9 ~Fv~~YY~~l~~~r 22 (123)
+|...||+.|.+.|
T Consensus 24 ~F~a~yF~~L~~~R 37 (38)
T PF02197_consen 24 QFAADYFEKLEKQR 37 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 68888988886654
No 51
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=20.69 E-value=1.9e+02 Score=17.76 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=35.0
Q ss_pred cCcccccHHHHHHHHhcCCCceeeEEeeEeeeeee-C-CCCcEEEEEEEEEEECCC
Q 033259 38 EGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPS-G-PAGGMLVFVSGNLQLAGE 91 (123)
Q Consensus 38 ~g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~-~-~~~~ilI~V~G~~~~~~~ 91 (123)
.+|...|.+.+.+.|.+-| .. +|.-++|+.. + -.......|.|.+..+..
T Consensus 9 ~~Nl~~g~~~~~~~Le~~p--~~--~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t 60 (78)
T PF07293_consen 9 VSNLASGTDQVYEKLEKDP--DI--DVIEYGCLSYCGPCAKKPFALVNGEIVAAET 60 (78)
T ss_pred ccCchhhhHHHHHHHhcCC--Cc--cEEEcChhhhCcCCCCCccEEECCEEEecCC
Confidence 4567789999999999877 33 5555666544 1 134577889999887764
No 52
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=20.57 E-value=75 Score=22.48 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=10.9
Q ss_pred hhhhccccCCCEEEEcCcc
Q 033259 23 TGLANLYQEGSMLTFEGQK 41 (123)
Q Consensus 23 ~~l~~~Y~~~s~~~~~g~~ 41 (123)
-.+.++|++||.+|+.+..
T Consensus 135 ~~~~~~yhpnA~~Sf~n~~ 153 (167)
T PF02552_consen 135 ISCDRYYHPNADMSFPNLS 153 (167)
T ss_dssp EE-SSS--TTSSEEE---G
T ss_pred EEeccccCCCcceecCCCC
Confidence 4567999999999997643
No 53
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=20.56 E-value=1.9e+02 Score=17.80 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=15.4
Q ss_pred EEEEEEEEEEC--CCC-cceeeEEEEEee
Q 033259 79 LVFVSGNLQLA--GEQ-HALKFSQMFHLM 104 (123)
Q Consensus 79 lI~V~G~~~~~--~~~-~~~~F~qtFvL~ 104 (123)
.++|+|.-... +.+ ..+.|+++|.|-
T Consensus 31 ~L~I~ge~~~~~~~~~~~~r~F~R~~~LP 59 (83)
T cd06477 31 WLLIKGQHGVRMDEHGFISRSFTRQYQLP 59 (83)
T ss_pred EEEEEEEEccccCCCCEEEEEEEEEEECC
Confidence 34566665432 111 246999999884
No 54
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=20.52 E-value=2.8e+02 Score=18.72 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhcc-ChhhhhccccC-CCEEEEc-CcccccHHHHHHHHhcCCCceeeEEeeEeeeeeeCCCCcEEEE
Q 033259 5 SVAKAFVEHYYTTFDA-NRTGLANLYQE-GSMLTFE-GQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLVF 81 (123)
Q Consensus 5 ~i~~~Fv~~YY~~l~~-~r~~l~~~Y~~-~s~~~~~-g~~~~G~~~I~~~l~~lp~~~~~~~i~s~d~q~~~~~~~ilI~ 81 (123)
++...| ..|...|.. +-+.|-.++.+ ...+.++ +....|.++|...-..-|-..-.-.+...-.... ..+ + -+
T Consensus 11 ev~aaf-~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~-G~d-~-A~ 86 (125)
T PF11533_consen 11 EVTAAF-DRYERALMANDVDALDALFWDDPRTVRYGAGENLYGHDAIRAFRAARPGGGPARTLERTVITTF-GRD-F-AT 86 (125)
T ss_dssp HHHHHH-HHHHHHHHCT-HHHHHHCB--STT-EEEETTEEEESHHHHHHHHHHS--TTTT-EEEEEEEEEE-TTT-E-EE
T ss_pred HHHHHH-HHHHHHHhhCCHHHHHHHhccCCceEEECCCccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEe-cCc-e-EE
Confidence 455555 456666654 56888876654 5677777 6788999999988766542211223444444444 222 2 24
Q ss_pred EEEEEEECCCCcceeeEEEEEeeeCCCCcEEEEceeEEee
Q 033259 82 VSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLN 121 (123)
Q Consensus 82 V~G~~~~~~~~~~~~F~qtFvL~~~~~~~y~I~nD~fr~~ 121 (123)
|+=.+...+.+..-+=+||.+-. + ++|.|+.=.-.++
T Consensus 87 v~tef~r~~~~~~GRQsQtWvr~--~-~gWrIvaAHVS~~ 123 (125)
T PF11533_consen 87 VSTEFRRDGSGRIGRQSQTWVRF--P-DGWRIVAAHVSLM 123 (125)
T ss_dssp EEEEEEETTECCEEEEEEEEEEE--T-TEEEEEEEEEEEE
T ss_pred EEEEEEECCCCceeEeEEEEEEC--C-CCEEEEEEEEeec
Confidence 44467776654344456776554 3 5899987555443
No 55
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.01 E-value=1.9e+02 Score=19.99 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred ccccHHHHHHHHhcC-C------CceeeEEeeEeeeeeeCCCCcEEEEEEEEEEEC
Q 033259 41 KIQGSQNIVAKLTSL-P------FQQCQHSITTVDCQPSGPAGGMLVFVSGNLQLA 89 (123)
Q Consensus 41 ~~~G~~~I~~~l~~l-p------~~~~~~~i~s~d~q~~~~~~~ilI~V~G~~~~~ 89 (123)
...|.++|.+.+.+. . -.+.++.+....|.-. -+.+=.++|.|.+..+
T Consensus 87 ~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~-C~~aP~~~in~~~~~~ 141 (156)
T PRK05988 87 QAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGL-CACSPAAMLDGEVHGR 141 (156)
T ss_pred hcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCc-cCCCCeEEECCEEeCC
Confidence 356888888888652 1 1244566666666443 3556677777776543
Done!