BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033262
MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST
EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP
EVN

High Scoring Gene Products

Symbol, full name Information P value
AT3G20340 protein from Arabidopsis thaliana 1.4e-09
AT4G21920 protein from Arabidopsis thaliana 3.0e-05
AT3G21680 protein from Arabidopsis thaliana 0.00042

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033262
        (123 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092384 - symbol:AT3G20340 "AT3G20340" species...   139  1.4e-09   1
TAIR|locus:2141682 - symbol:AT4G21920 "AT4G21920" species...    98  3.0e-05   1
TAIR|locus:2089945 - symbol:AT3G21680 "AT3G21680" species...    71  0.00042   2


>TAIR|locus:2092384 [details] [associations]
            symbol:AT3G20340 "AT3G20340" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006979 "response to oxidative stress"
            evidence=IMP] EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979
            EMBL:AB024036 EMBL:BT011597 EMBL:BT012235 IPI:IPI00523809
            RefSeq:NP_188669.1 UniGene:At.38253 EnsemblPlants:AT3G20340.1
            GeneID:821578 KEGG:ath:AT3G20340 TAIR:At3g20340 eggNOG:NOG331746
            HOGENOM:HOG000153107 InParanoid:Q9LTR0 OMA:RHESEMH PhylomeDB:Q9LTR0
            ProtClustDB:CLSN2915477 Genevestigator:Q9LTR0 Uniprot:Q9LTR0
        Length = 115

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 41/127 (32%), Positives = 58/127 (45%)

Query:     1 MGNCIRHQHQPSMQWAGDDWGAVV--ESASNHRTEEAKQEGLLLGGDKVGFITSPT-SAA 57
             MGNC+RH+ +  M WAG+DW   +  +   +H + +  ++G      K   +T  + S+ 
Sbjct:     1 MGNCLRHESE--MHWAGEDWDEFITEDEEDHHYSSKTTRDG------KPVIVTRDSKSSV 52

Query:    58 SSXXXXXXXXXXXXXXXXGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQ-RSWRPAL 116
              S                 K +V  L+ QQ       +N    N  Y E NQ R WRP L
Sbjct:    53 PSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILN----NRGYEEANQQRLWRPVL 108

Query:   117 QSIPEVN 123
             QSIPEVN
Sbjct:   109 QSIPEVN 115


>TAIR|locus:2141682 [details] [associations]
            symbol:AT4G21920 "AT4G21920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL161556 EMBL:AL021890 IPI:IPI00541641 PIR:T05474
            RefSeq:NP_193923.1 UniGene:At.49406 EnsemblPlants:AT4G21920.1
            GeneID:828281 KEGG:ath:AT4G21920 TAIR:At4g21920 eggNOG:NOG298044
            HOGENOM:HOG000238355 InParanoid:O49715 OMA:NCICVTE PhylomeDB:O49715
            ProtClustDB:CLSN2915929 Genevestigator:O49715 Uniprot:O49715
        Length = 129

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 34/130 (26%), Positives = 57/130 (43%)

Query:     1 MGNCIRHQHQPSMQWAGDDWGAVVESASNHRT---EEAKQEGLLLGGDKVGFITSPTSAA 57
             MGNCI    + +  W+GDD G+  +     R+    +   +G  L G+    +TS +S++
Sbjct:     1 MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSN-VTSTSSSS 59

Query:    58 SSXXXXXXXXXXXXXXXXGKADV--KGLSVQQVLAHLINVNVSSSN-DRYHETNQRS-WR 113
             SS                   ++  K L+ +++L+ LI              TN    W+
Sbjct:    60 SSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWK 119

Query:   114 PALQSIPEVN 123
             P LQSIPE++
Sbjct:   120 PVLQSIPEMD 129


>TAIR|locus:2089945 [details] [associations]
            symbol:AT3G21680 "AT3G21680" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AB019232 InterPro:IPR025322 Pfam:PF14009 IPI:IPI00538440
            RefSeq:NP_188805.1 UniGene:At.38010 EnsemblPlants:AT3G21680.1
            GeneID:821722 KEGG:ath:AT3G21680 TAIR:At3g21680 eggNOG:NOG307229
            HOGENOM:HOG000131704 InParanoid:Q3EB28 OMA:SIPESHY
            ProtClustDB:CLSN2915755 Genevestigator:Q3EB28 Uniprot:Q3EB28
        Length = 119

 Score = 71 (30.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query:    84 SVQQVLAHLI-----NVNVSSSNDRYHETNQRSWRPALQSIPE 121
             S+QQ L H++     N++++S  +   E    +WRP L+SIPE
Sbjct:    75 SIQQ-LVHVLKDSGRNISMASYEEDEKEEGDENWRPTLESIPE 116

 Score = 42 (19.8 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query:     1 MGNCIRHQH 9
             MGNC+RH +
Sbjct:     1 MGNCLRHDN 9


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       107   0.00091  102 3  11 23  0.37    31
                                                     29  0.40    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.00u 0.14s 9.14t   Elapsed:  00:00:00
  Total cpu time:  9.00u 0.14s 9.14t   Elapsed:  00:00:00
  Start:  Mon May 20 22:18:07 2013   End:  Mon May 20 22:18:07 2013

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