BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033262
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80325|RNS7_PYRPY Ribonuclease S-7 OS=Pyrus pyrifolia PE=1 SV=1
Length = 226
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 60 TEIKIKITKKQ-LEELLGKADVKGLSVQQVLAHLINVNVSSSNDR 103
T I + IT+KQ + E+L KA ++ L +Q+ L H+ N +S+N++
Sbjct: 133 TVINMYITQKQNVSEILSKAKIEPLGIQRPLVHIENAIRNSTNNK 177
>sp|P32635|G3P1_AGABI Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus
GN=gpd1 PE=3 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 8 QHQPS-MQWAGDDWGA--VVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASSTEIKI 64
+ +P+ ++WA D GA +VES +TEE +E L G KV IT+P S + + +
Sbjct: 77 EREPANIKWA--DCGAEYIVESTGVFKTEELAKEHLKGGAKKV-VITAPGSGVPTYVVGV 133
Query: 65 KITKKQLEELLGKADVKGLSVQQVLAHLIN 94
+ K +E++ + VLA +IN
Sbjct: 134 NLDKYDPKEVVISNASCTTNCLAVLAKVIN 163
>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain
M41) GN=1a PE=1 SV=1
Length = 3953
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 14 QWAGDDWGAVVESASNHRTEEAKQEGLLL 42
+++GD WG V+ A+NH E Q G+ L
Sbjct: 2826 KFSGDQWGDVLNLANNHEFEVVTQNGVTL 2854
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus
(strain M41) GN=rep PE=1 SV=1
Length = 6631
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 14 QWAGDDWGAVVESASNHRTEEAKQEGLLL 42
+++GD WG V+ A+NH E Q G+ L
Sbjct: 2826 KFSGDQWGDVLNLANNHEFEVVTQNGVTL 2854
>sp|B0TQA0|TRUB_SHEHH tRNA pseudouridine synthase B OS=Shewanella halifaxensis (strain
HAW-EB4) GN=truB PE=3 SV=1
Length = 315
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 66 ITKKQLEELLGKADVKGLSVQQVLAHLI 93
++ KQLEEL+ KAD + LS+ +VL L+
Sbjct: 213 VSLKQLEELVTKADAESLSLSEVLDPLL 240
>sp|A8H738|TRUB_SHEPA tRNA pseudouridine synthase B OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=truB PE=3 SV=1
Length = 315
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 66 ITKKQLEELLGKADVKGLSVQQVLAHLI 93
++ KQLEEL+ KAD + L++ +VL L+
Sbjct: 213 VSLKQLEELVAKADAESLTLSEVLDPLL 240
>sp|Q0JNL7|CALM3_ORYSJ Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1
Length = 149
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 33 EEAKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKG 82
EE K+ + D+ GFI++ T + K+T +++EE++ +ADV G
Sbjct: 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDG 133
>sp|P27164|CALM3_PETHY Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2
Length = 184
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 33 EEAKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHL 92
EE K+ + D+ GFI++ T + K+T ++++E++ +ADV G Q
Sbjct: 84 EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDG-DGQINYEEF 142
Query: 93 INVNVSSSNDRYHETNQRS 111
+ V +++ R E ++RS
Sbjct: 143 VKVMMANRRRRRIEESKRS 161
>sp|Q10366|PIK1_SCHPO Phosphatidylinositol 4-kinase pik1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pik1 PE=1 SV=1
Length = 851
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 35 AKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLIN 94
++ +L+ GD G I + T+A S IK +TK+ E L + + G +V + + I
Sbjct: 615 VRRMKILVTGDNSGLIETITNAISVHSIKKNLTKQLREAELAQGKIAGKNVVTLKDYFIK 674
Query: 95 VNVSSSNDRYHE 106
++ RY +
Sbjct: 675 QFGDPNSSRYRQ 686
>sp|Q73B97|LEUD_BACC1 3-isopropylmalate dehydratase small subunit OS=Bacillus cereus
(strain ATCC 10987) GN=leuD PE=3 SV=1
Length = 193
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 66 ITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPAL 116
+ K++ E L K D + +Q+ +L N +++S R+H T ++ W+ L
Sbjct: 120 VMDKEMREKLAKTDAR----EQIEVNLENEVITTSTHRFHFTIEKMWKEKL 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,661,917
Number of Sequences: 539616
Number of extensions: 1495868
Number of successful extensions: 4078
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 57
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)