Query 033262
Match_columns 123
No_of_seqs 114 out of 138
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 11:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 99.1 1.2E-10 2.7E-15 85.3 4.2 60 55-121 122-181 (181)
2 PF01402 RHH_1: Ribbon-helix-h 78.7 4.4 9.4E-05 23.0 3.6 35 61-95 1-35 (39)
3 PF09274 ParG: ParG; InterPro 73.2 10 0.00023 26.1 4.8 45 51-95 26-70 (76)
4 PF13545 HTH_Crp_2: Crp-like h 72.6 6.2 0.00014 24.9 3.5 38 57-97 20-57 (76)
5 TIGR03853 matur_matur probable 59.6 15 0.00032 25.4 3.4 31 66-96 18-58 (77)
6 PF05595 DUF771: Domain of unk 53.3 22 0.00048 24.4 3.5 30 63-92 3-33 (91)
7 PF00325 Crp: Bacterial regula 51.2 19 0.00041 20.7 2.4 13 64-76 1-13 (32)
8 TIGR03697 NtcA_cyano global ni 49.1 18 0.00038 26.3 2.6 37 58-97 136-172 (193)
9 PF01023 S_100: S-100/ICaBP ty 47.3 15 0.00033 22.2 1.7 14 65-78 24-37 (44)
10 PF03847 TFIID_20kDa: Transcri 47.0 20 0.00043 23.8 2.4 28 67-94 1-31 (68)
11 PF10078 DUF2316: Uncharacteri 46.2 15 0.00033 25.8 1.8 25 65-92 9-33 (89)
12 PF10678 DUF2492: Protein of u 45.5 36 0.00078 23.5 3.5 31 66-96 20-60 (78)
13 PRK13918 CRP/FNR family transc 44.2 29 0.00063 25.5 3.2 34 61-97 145-178 (202)
14 PHA01623 hypothetical protein 43.3 59 0.0013 20.6 4.1 42 54-95 8-49 (56)
15 smart00419 HTH_CRP helix_turn_ 43.0 41 0.0009 18.9 3.1 35 60-97 3-37 (48)
16 PRK13877 conjugal transfer rel 41.8 54 0.0012 23.8 4.2 38 57-94 8-45 (114)
17 PF13833 EF-hand_8: EF-hand do 40.0 78 0.0017 18.5 4.2 23 65-87 4-26 (54)
18 cd05023 S-100A11 S-100A11: S-1 38.9 26 0.00056 23.8 2.0 14 65-78 27-40 (89)
19 PF02282 Herpes_UL42: DNA poly 37.3 19 0.0004 27.6 1.2 17 62-78 1-17 (156)
20 PHA02843 hypothetical protein; 34.4 17 0.00036 24.4 0.5 7 1-7 1-7 (73)
21 COG1722 XseB Exonuclease VII s 33.8 51 0.0011 22.7 2.8 28 67-94 15-42 (81)
22 cd05026 S-100Z S-100Z: S-100Z 32.9 39 0.00084 22.8 2.2 13 65-77 28-40 (93)
23 PRK11675 LexA regulated protei 32.9 88 0.0019 22.1 4.0 40 56-95 47-86 (90)
24 PF08681 DUF1778: Protein of u 32.2 71 0.0015 21.3 3.3 31 61-91 1-31 (80)
25 PRK11753 DNA-binding transcrip 31.9 40 0.00086 24.8 2.2 33 62-97 165-197 (211)
26 PRK14068 exodeoxyribonuclease 29.6 74 0.0016 21.6 3.0 25 69-93 13-37 (76)
27 PRK00977 exodeoxyribonuclease 29.6 71 0.0015 21.7 3.0 25 69-93 17-41 (80)
28 PRK09391 fixK transcriptional 29.2 69 0.0015 24.5 3.2 35 60-97 174-208 (230)
29 cd05024 S-100A10 S-100A10: A s 28.9 41 0.00089 23.6 1.7 14 65-78 23-36 (91)
30 PRK14066 exodeoxyribonuclease 27.9 85 0.0018 21.2 3.1 24 69-92 11-34 (75)
31 PF02609 Exonuc_VII_S: Exonucl 27.7 74 0.0016 19.6 2.6 26 69-94 6-31 (53)
32 COG1393 ArsC Arsenate reductas 27.4 59 0.0013 23.4 2.4 14 66-79 38-51 (117)
33 TIGR01639 P_fal_TIGR01639 Plas 27.1 82 0.0018 20.1 2.8 25 65-90 9-33 (61)
34 PRK14063 exodeoxyribonuclease 27.1 89 0.0019 21.0 3.1 24 69-92 12-35 (76)
35 TIGR01280 xseB exodeoxyribonuc 26.9 93 0.002 20.4 3.1 25 69-93 8-32 (67)
36 TIGR01610 phage_O_Nterm phage 26.8 46 0.001 22.7 1.7 34 61-97 43-76 (95)
37 PRK11161 fumarate/nitrate redu 26.7 70 0.0015 24.1 2.9 35 60-97 179-213 (235)
38 cd07981 TAF12 TATA Binding Pro 26.3 68 0.0015 21.0 2.4 16 65-80 1-16 (72)
39 PF03484 B5: tRNA synthetase B 26.1 1.7E+02 0.0038 18.6 4.3 32 62-97 2-33 (70)
40 PF10723 RepB-RCR_reg: Replica 26.1 1.3E+02 0.0029 20.6 3.9 39 57-95 39-77 (84)
41 PF12244 DUF3606: Protein of u 25.6 90 0.0019 19.8 2.8 26 64-92 30-55 (57)
42 PF13202 EF-hand_5: EF hand; P 25.3 73 0.0016 16.7 2.0 11 65-75 15-25 (25)
43 KOG3856 Uncharacterized conser 25.1 53 0.0011 24.9 1.8 25 66-94 14-38 (135)
44 COG4628 Uncharacterized conser 24.9 90 0.002 23.5 3.0 30 66-95 1-30 (136)
45 PRK14064 exodeoxyribonuclease 24.9 1E+02 0.0023 20.7 3.1 24 69-92 13-36 (75)
46 PF13758 Prefoldin_3: Prefoldi 24.7 1.1E+02 0.0023 22.1 3.3 29 65-93 46-74 (99)
47 cd03034 ArsC_ArsC Arsenate Red 24.3 80 0.0017 22.0 2.6 15 65-79 35-49 (112)
48 PF09340 NuA4: Histone acetylt 23.6 52 0.0011 22.3 1.5 11 68-78 1-11 (80)
49 PRK14070 exodeoxyribonuclease 23.2 1.2E+02 0.0025 20.3 3.1 24 69-92 2-25 (69)
50 PRK14069 exodeoxyribonuclease 23.1 1.1E+02 0.0024 21.7 3.1 24 69-92 15-38 (95)
51 PF08586 Rsc14: RSC complex, R 23.1 49 0.0011 24.0 1.3 17 62-78 17-33 (101)
52 smart00874 B5 tRNA synthetase 23.0 2E+02 0.0043 17.9 4.1 31 63-97 3-33 (71)
53 PRK14067 exodeoxyribonuclease 22.8 1.2E+02 0.0025 20.8 3.1 25 69-93 14-38 (80)
54 PF03962 Mnd1: Mnd1 family; I 22.7 89 0.0019 24.2 2.8 33 65-97 11-44 (188)
55 PF02406 MmoB_DmpM: MmoB/DmpM 22.2 1E+02 0.0022 21.3 2.7 29 58-90 35-67 (87)
56 PRK09392 ftrB transcriptional 21.8 1.7E+02 0.0037 22.1 4.1 36 59-97 167-202 (236)
57 PF12872 OST-HTH: OST-HTH/LOTU 21.5 72 0.0016 20.0 1.7 51 68-121 7-59 (74)
58 TIGR02010 IscR iron-sulfur clu 21.1 87 0.0019 22.4 2.3 12 85-96 42-53 (135)
59 PRK13858 type IV secretion sys 20.4 2.2E+02 0.0048 21.8 4.4 39 57-95 22-60 (147)
60 PF00036 EF-hand_1: EF hand; 20.3 1E+02 0.0023 16.7 2.0 13 65-77 16-28 (29)
61 PF11410 Antifungal_pept: Anti 20.1 38 0.00081 20.3 0.2 6 1-6 14-19 (36)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=99.07 E-value=1.2e-10 Score=85.26 Aligned_cols=60 Identities=38% Similarity=0.581 Sum_probs=41.8
Q ss_pred CCCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCC
Q 033262 55 SAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPE 121 (123)
Q Consensus 55 ~~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~~~~~~~~~~~~~~~WrPaLeSIPE 121 (123)
..+++++|||+|+|+||+++|... +.++++.++....... ..+...+.++|||+||||||
T Consensus 122 ~~~g~~rvki~isk~el~~~l~~~-----s~~~~~~~~~~~~~~~--~~~~~~~~~~WrP~LesI~E 181 (181)
T PF14009_consen 122 SNGGVVRVKIVISKEELEELLSEG-----SDEEMLSESCRRPRRR--SSRRGSRSRSWRPALESIPE 181 (181)
T ss_pred ccCcccccccccCHHHHHHHHhcc-----ccchhhhhhhcccccc--ccccCCCCCCccCCCCCcCc
Confidence 356788999999999999999754 4455555544332110 11234567899999999998
No 2
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=78.66 E-value=4.4 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=27.2
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
||.|.|+..+.+.|=.-....|.|..+++..+...
T Consensus 1 Riti~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~ 35 (39)
T PF01402_consen 1 RITIRLPDELYERLDELAKELGRSRSELIREAIRE 35 (39)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHH
T ss_pred CeEEEeCHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 68899998887777665555579999998887653
No 3
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=73.19 E-value=10 Score=26.06 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=31.2
Q ss_pred cCCCCCCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 51 TSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 51 ~~~~~~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
.++..++..+||.|-|....=.+|=..+-..|.++-|||.+|+..
T Consensus 26 ~a~~~s~k~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid~ 70 (76)
T PF09274_consen 26 NAPKPSEKTKRVTVNIDEELHRRFKAACAKQGTSISDVVRELIDK 70 (76)
T ss_dssp STTTTTTTEEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred hCcCCccceEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334566789999999987766666555545689999999999865
No 4
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=72.63 E-value=6.2 Score=24.93 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=30.7
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
.+...+.+-+|+++|..++.-. ..++..+|..|.+.+.
T Consensus 20 ~~~~~~~~~lt~~~iA~~~g~s---r~tv~r~l~~l~~~g~ 57 (76)
T PF13545_consen 20 GDGIRIPLPLTQEEIADMLGVS---RETVSRILKRLKDEGI 57 (76)
T ss_dssp TTEEEEEEESSHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred CCCceEEecCCHHHHHHHHCCC---HHHHHHHHHHHHHCCC
Confidence 3567789999999999999543 4678889999988874
No 5
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=59.62 E-value=15 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=26.1
Q ss_pred EeHHHHHHHHhcc----------CCCCCcHHHHHHHHHhcc
Q 033262 66 ITKKQLEELLGKA----------DVKGLSVQQVLAHLINVN 96 (123)
Q Consensus 66 ITKqEL~~LL~k~----------~~~g~slEqvL~~L~~~~ 96 (123)
+||++|+..+.+. ...+++++++|.-|..++
T Consensus 18 ~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 18 YTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred cCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 6999999999865 246799999999998876
No 6
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=53.28 E-value=22 Score=24.41 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=23.9
Q ss_pred EEEEeHHHHHHHHhccCCCC-CcHHHHHHHH
Q 033262 63 KIKITKKQLEELLGKADVKG-LSVQQVLAHL 92 (123)
Q Consensus 63 KIvITKqEL~~LL~k~~~~g-~slEqvL~~L 92 (123)
+|.|+|.|+++|..+...+. -++.++...+
T Consensus 3 ~vii~k~ey~el~~~~~~~~~W~~~dl~k~~ 33 (91)
T PF05595_consen 3 KVIIDKEEYEELKKKDLEGKWWDMKDLRKRT 33 (91)
T ss_pred eEEeeHHHHHHHHHHhhccceeeHHHHHHHH
Confidence 68999999999998775443 4888887766
No 7
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=51.22 E-value=19 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=9.6
Q ss_pred EEEeHHHHHHHHh
Q 033262 64 IKITKKQLEELLG 76 (123)
Q Consensus 64 IvITKqEL~~LL~ 76 (123)
|.||++|+..+|.
T Consensus 1 l~mtr~diA~~lG 13 (32)
T PF00325_consen 1 LPMTRQDIADYLG 13 (32)
T ss_dssp EE--HHHHHHHHT
T ss_pred CCcCHHHHHHHhC
Confidence 6799999999994
No 8
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=49.11 E-value=18 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.438 Sum_probs=28.6
Q ss_pred CceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 58 SSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 58 ~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+...+.+.+|++||..+|.-. ..++-.+|+.|.+.++
T Consensus 136 ~~~~~~~~~t~~~iA~~lG~t---retvsR~l~~l~~~g~ 172 (193)
T TIGR03697 136 RGVTIDLRLSHQAIAEAIGST---RVTITRLLGDLRKKKL 172 (193)
T ss_pred CeEEecCCCCHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 345678889999999999533 4567788888888774
No 9
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=47.30 E-value=15 Score=22.21 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=12.0
Q ss_pred EEeHHHHHHHHhcc
Q 033262 65 KITKKQLEELLGKA 78 (123)
Q Consensus 65 vITKqEL~~LL~k~ 78 (123)
.|+|.||++||.+.
T Consensus 24 ~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 24 TLSKKELKELLEKE 37 (44)
T ss_dssp SEEHHHHHHHHHHH
T ss_pred eEcHHHHHHHHHHH
Confidence 48999999999764
No 10
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=46.97 E-value=20 Score=23.78 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=18.6
Q ss_pred eHHHHHHHHhccCCCC---CcHHHHHHHHHh
Q 033262 67 TKKQLEELLGKADVKG---LSVQQVLAHLIN 94 (123)
Q Consensus 67 TKqEL~~LL~k~~~~g---~slEqvL~~L~~ 94 (123)
||+.|++|+.+.+.+. ..+|++|.+|..
T Consensus 1 ~K~~l~~Lv~~iDp~~~ld~~vee~Ll~lad 31 (68)
T PF03847_consen 1 SKRKLQELVKQIDPNEKLDPDVEELLLELAD 31 (68)
T ss_dssp -HHHHHHHHHCC-SS----HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7999999999886532 346777766644
No 11
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=46.19 E-value=15 Score=25.84 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEeHHHHHHHHhccCCCCCcHHHHHHHH
Q 033262 65 KITKKQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 65 vITKqEL~~LL~k~~~~g~slEqvL~~L 92 (123)
+.||+||++=.... |++++++...|
T Consensus 9 ~~T~~ELq~nf~~~---~ls~~~ia~dL 33 (89)
T PF10078_consen 9 RATRQELQANFELS---GLSLEQIAADL 33 (89)
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHh
Confidence 36888888877766 56666666665
No 12
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=45.53 E-value=36 Score=23.46 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.5
Q ss_pred EeHHHHHHHHhcc----------CCCCCcHHHHHHHHHhcc
Q 033262 66 ITKKQLEELLGKA----------DVKGLSVQQVLAHLINVN 96 (123)
Q Consensus 66 ITKqEL~~LL~k~----------~~~g~slEqvL~~L~~~~ 96 (123)
+||++|.+.+... ...+.+++++|.-|..++
T Consensus 20 ~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 20 YTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 6999999999755 346799999999887775
No 13
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=44.24 E-value=29 Score=25.45 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.1
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
.+.+.||++||..+|.-. ..+|--+|.+|.+.++
T Consensus 145 ~~~~~~t~~~iA~~lG~t---retvsR~l~~l~~~g~ 178 (202)
T PRK13918 145 ETMIYATHDELAAAVGSV---RETVTKVIGELSREGY 178 (202)
T ss_pred eEEecCCHHHHHHHhCcc---HHHHHHHHHHHHHCCC
Confidence 678899999999999543 4567778888888774
No 14
>PHA01623 hypothetical protein
Probab=43.34 E-value=59 Score=20.64 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=31.1
Q ss_pred CCCCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 54 TSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 54 ~~~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
......+|+.|+|.+.-+++|-.-....+.+.-+++.+.++.
T Consensus 8 ~~~~k~~r~sVrldeel~~~Ld~y~~~~g~~rSe~IreAI~~ 49 (56)
T PHA01623 8 TEKKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQAIEEAIKE 49 (56)
T ss_pred hhhccceeEEEEeCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334578999999999999888765555567777777766553
No 15
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=42.99 E-value=41 Score=18.91 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=27.7
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+++-+.+|.++|.+++.-. ..++...|..|...+.
T Consensus 3 ~~~~~~~s~~~la~~l~~s---~~tv~~~l~~L~~~g~ 37 (48)
T smart00419 3 IRVRLPLTRQEIAELLGLT---RETVSRTLKRLEKEGL 37 (48)
T ss_pred ceEEeccCHHHHHHHHCCC---HHHHHHHHHHHHHCCC
Confidence 4577889999999999543 4577888898888774
No 16
>PRK13877 conjugal transfer relaxosome component TraJ; Provisional
Probab=41.78 E-value=54 Score=23.83 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
.....|+|++|-+|.+.+-.+...-|+|+.+.|..+.-
T Consensus 8 KR~~~I~vrvt~eE~~~I~~kA~~AGlS~SeYLR~~aL 45 (114)
T PRK13877 8 KRGRHLRVPVLPDEKAEIEANAAAAGLSVARYLRDVGQ 45 (114)
T ss_pred ccCceeEEEeCHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35566999999999999999887777888887776644
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=40.01 E-value=78 Score=18.50 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=13.1
Q ss_pred EEeHHHHHHHHhccCCCCCcHHH
Q 033262 65 KITKKQLEELLGKADVKGLSVQQ 87 (123)
Q Consensus 65 vITKqEL~~LL~k~~~~g~slEq 87 (123)
.||+++|..+|...+.+..+-++
T Consensus 4 ~i~~~~~~~~l~~~g~~~~s~~e 26 (54)
T PF13833_consen 4 KITREEFRRALSKLGIKDLSEEE 26 (54)
T ss_dssp EEEHHHHHHHHHHTTSSSSCHHH
T ss_pred EECHHHHHHHHHHhCCCCCCHHH
Confidence 47777777777544322245444
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=38.88 E-value=26 Score=23.83 Aligned_cols=14 Identities=7% Similarity=0.370 Sum_probs=10.9
Q ss_pred EEeHHHHHHHHhcc
Q 033262 65 KITKKQLEELLGKA 78 (123)
Q Consensus 65 vITKqEL~~LL~k~ 78 (123)
.|||+||+.||.+.
T Consensus 27 ~Ls~~Elk~ll~~e 40 (89)
T cd05023 27 QLSKTEFLSFMNTE 40 (89)
T ss_pred eECHHHHHHHHHHh
Confidence 47888888888765
No 19
>PF02282 Herpes_UL42: DNA polymerase processivity factor (UL42); InterPro: IPR003202 The DNA polymerase processivity factor (UL42) of Human herpesvirus 1 (HHV-1) forms a heterodimer with UL30 to create the viral DNA polymerase complex. UL42 functions to increase the processivity of polymerisation and makes little contribution to the catalytic activity of the polymerase.; GO: 0003677 DNA binding, 0006260 DNA replication; PDB: 1DML_G.
Probab=37.26 E-value=19 Score=27.63 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=15.3
Q ss_pred EEEEEeHHHHHHHHhcc
Q 033262 62 IKIKITKKQLEELLGKA 78 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~ 78 (123)
|+|+++|+||.+|++-.
T Consensus 1 v~~~L~~~QL~kil~~~ 17 (156)
T PF02282_consen 1 VRLVLSKPQLNKILAVA 17 (156)
T ss_dssp EEEEEECCHHHHHHHCC
T ss_pred CEEEEcHHHHHHHHHhh
Confidence 68999999999999865
No 20
>PHA02843 hypothetical protein; Provisional
Probab=34.44 E-value=17 Score=24.37 Aligned_cols=7 Identities=71% Similarity=1.412 Sum_probs=6.4
Q ss_pred CCCcccC
Q 033262 1 MGNCIRH 7 (123)
Q Consensus 1 MGNC~~~ 7 (123)
||||-|.
T Consensus 1 mgncsrk 7 (73)
T PHA02843 1 MGNCSRK 7 (73)
T ss_pred CCccchh
Confidence 9999987
No 21
>COG1722 XseB Exonuclease VII small subunit [DNA replication, recombination, and repair]
Probab=33.81 E-value=51 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.3
Q ss_pred eHHHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 67 TKKQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 67 TKqEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
..+||++++.+...|..+||+.|....+
T Consensus 15 ~l~eLE~IV~~LE~Gel~Le~sl~~~er 42 (81)
T COG1722 15 ALAELEEIVESLESGELPLEEALKEFER 42 (81)
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 3689999999998888999998876654
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=32.94 E-value=39 Score=22.82 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=9.9
Q ss_pred EEeHHHHHHHHhc
Q 033262 65 KITKKQLEELLGK 77 (123)
Q Consensus 65 vITKqEL~~LL~k 77 (123)
.||++||+.+|.+
T Consensus 28 ~Is~~EL~~ll~~ 40 (93)
T cd05026 28 KLSKGELKELLQR 40 (93)
T ss_pred EECHHHHHHHHHH
Confidence 4788888888855
No 23
>PRK11675 LexA regulated protein; Provisional
Probab=32.94 E-value=88 Score=22.11 Aligned_cols=40 Identities=10% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 56 AASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 56 ~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
+.|-.+|.|+|+-.-.+.|-.-+...+++--+++...+..
T Consensus 47 ~~glKRveVKldedl~ekL~eyAe~~nitRSElIr~~I~k 86 (90)
T PRK11675 47 VRGLKRVELKLNADLVDALNELAEARNISRSELIEEILMK 86 (90)
T ss_pred HcCceeEEEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4588899999999999988776666788888887776654
No 24
>PF08681 DUF1778: Protein of unknown function (DUF1778); InterPro: IPR014795 This entry is represented by Vibrio phage ICP1, Orf50. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA. ; PDB: 1Y9B_A.
Probab=32.16 E-value=71 Score=21.28 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHH
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAH 91 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~ 91 (123)
||.|++|.++.+-|-......|.++-+.+..
T Consensus 1 Ri~iR~~~e~k~li~~AA~~~G~sls~Fi~~ 31 (80)
T PF08681_consen 1 RIEIRVTPEEKELIERAAALSGVSLSDFILS 31 (80)
T ss_dssp EEEEE--HHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred CeeEecCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7899999988877776666667888875543
No 25
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=31.88 E-value=40 Score=24.81 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=26.2
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.+.+|++||..+|.-. ..++..+|..|...++
T Consensus 165 ~~~~~t~~~lA~~lG~t---r~tvsR~l~~l~~~gi 197 (211)
T PRK11753 165 MQIKITRQEIGRIVGCS---REMVGRVLKMLEDQGL 197 (211)
T ss_pred eecCCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 67889999999999533 4567788888888774
No 26
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.61 E-value=74 Score=21.55 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
++|++++.+...+.++|++.+....
T Consensus 13 ~~Le~IV~~LE~gdl~Leesl~lye 37 (76)
T PRK14068 13 QELEQIVQKLDNETVSLEESLDLYQ 37 (76)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5899999999888899999877543
No 27
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=29.58 E-value=71 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
++|++++.+...+.++|++.+....
T Consensus 17 ~~LEeIv~~LE~~~l~Lees~~lye 41 (80)
T PRK00977 17 AELEEIVTRLESGDLPLEESLAAFE 41 (80)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 6899999999888899998876543
No 28
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=29.17 E-value=69 Score=24.54 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=27.2
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
..+.|.+|++||..+|.-. ..++--+|..|.+.|+
T Consensus 174 ~~i~i~lt~~~IA~~lGis---retlsR~L~~L~~~Gl 208 (230)
T PRK09391 174 GMMALPMSRRDIADYLGLT---IETVSRALSQLQDRGL 208 (230)
T ss_pred CEEEecCCHHHHHHHHCCC---HHHHHHHHHHHHHCCc
Confidence 3578889999999999433 4567778888888774
No 29
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=28.86 E-value=41 Score=23.60 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=12.1
Q ss_pred EEeHHHHHHHHhcc
Q 033262 65 KITKKQLEELLGKA 78 (123)
Q Consensus 65 vITKqEL~~LL~k~ 78 (123)
.|+|.||++||.+.
T Consensus 23 tLsk~Elk~Ll~~E 36 (91)
T cd05024 23 YLNRDDLQKLMEKE 36 (91)
T ss_pred cCCHHHHHHHHHHH
Confidence 59999999999754
No 30
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.90 E-value=85 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L 92 (123)
++|++++.+...+.++|++.+...
T Consensus 11 ~~LE~IV~~LE~g~l~Leesl~ly 34 (75)
T PRK14066 11 KKLEEVVKKLEGGELSLDDSLKAF 34 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 579999999888889999887654
No 31
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.68 E-value=74 Score=19.58 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
++|++++.+...+.++|++.+.....
T Consensus 6 ~~Le~Iv~~Le~~~~sLdes~~lyee 31 (53)
T PF02609_consen 6 ERLEEIVEKLESGELSLDESLKLYEE 31 (53)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57899999888888999998875433
No 32
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.36 E-value=59 Score=23.40 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=12.5
Q ss_pred EeHHHHHHHHhccC
Q 033262 66 ITKKQLEELLGKAD 79 (123)
Q Consensus 66 ITKqEL~~LL~k~~ 79 (123)
+|+.+|.++|++.+
T Consensus 38 ~s~~eL~~~l~~~g 51 (117)
T COG1393 38 PSREELKKILSKLG 51 (117)
T ss_pred CCHHHHHHHHHHcC
Confidence 89999999998873
No 33
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=27.13 E-value=82 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEeHHHHHHHHhccCCCCCcHHHHHH
Q 033262 65 KITKKQLEELLGKADVKGLSVQQVLA 90 (123)
Q Consensus 65 vITKqEL~~LL~k~~~~g~slEqvL~ 90 (123)
.+|++||.++|...+ +-++.++|..
T Consensus 9 ~lTeEEl~~~i~~L~-~~~~~~dm~~ 33 (61)
T TIGR01639 9 KLSKEELNELINSLD-EIPNRNDMLI 33 (61)
T ss_pred HccHHHHHHHHHhhc-CCCCHHHHHH
Confidence 489999999998873 3467777654
No 34
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.13 E-value=89 Score=21.04 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.7
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L 92 (123)
++|++++.+...+.++|++.+...
T Consensus 12 ~~LE~Iv~~LE~~~l~Leesl~ly 35 (76)
T PRK14063 12 SQLEHLVSKLEQGDVPLEEAISYF 35 (76)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 579999999888889999877644
No 35
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=26.95 E-value=93 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=20.5
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
.+|++++.+...+.++|++.+....
T Consensus 8 ~~Le~Iv~~LE~~~l~Leesl~lye 32 (67)
T TIGR01280 8 SELEQIVQKLESGDLALEEALNLFE 32 (67)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5799999998888899999876543
No 36
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=26.83 E-value=46 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.4
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+..+.||.+||.+++.-. ..++-.+|..|..++.
T Consensus 43 ~~~~~is~~eLa~~~g~s---r~tVsr~L~~Le~~Gl 76 (95)
T TIGR01610 43 KKQDRVTATVIAELTGLS---RTHVSDAIKSLARRRI 76 (95)
T ss_pred ccCCccCHHHHHHHHCcC---HHHHHHHHHHHHHCCC
Confidence 378889999999999655 4678899999998875
No 37
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=26.69 E-value=70 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.368 Sum_probs=26.7
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
..+.|.||.++|..+|.-. ..+|--+|..|.+.+.
T Consensus 179 ~~~~~~lt~~~iA~~lG~s---r~tvsR~l~~l~~~g~ 213 (235)
T PRK11161 179 REFRLTMTRGDIGNYLGLT---VETISRLLGRFQKSGM 213 (235)
T ss_pred ceeEccccHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 3678899999999999433 4566777888887764
No 38
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=26.29 E-value=68 Score=21.00 Aligned_cols=16 Identities=44% Similarity=0.627 Sum_probs=13.3
Q ss_pred EEeHHHHHHHHhccCC
Q 033262 65 KITKKQLEELLGKADV 80 (123)
Q Consensus 65 vITKqEL~~LL~k~~~ 80 (123)
+++|+.|.+||.+.+.
T Consensus 1 i~~k~~l~~lv~~id~ 16 (72)
T cd07981 1 ILTKRKLQELLKEIDP 16 (72)
T ss_pred CCcHHHHHHHHHhhCC
Confidence 4789999999988864
No 39
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=26.08 E-value=1.7e+02 Score=18.63 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=24.0
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
.+|.++.+.+.++|... .+.+++..-|.+.+.
T Consensus 2 ~~i~~~~~~i~~~lG~~----i~~~~i~~~L~~lg~ 33 (70)
T PF03484_consen 2 KKITLSLDKINKLLGID----ISPEEIIKILKRLGF 33 (70)
T ss_dssp EEEEEEHHHHHHHHTS-------HHHHHHHHHHTT-
T ss_pred eEEEecHHHHHHHhCCC----CCHHHHHHHHHHCCC
Confidence 57899999999999764 788888888877763
No 40
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=26.08 E-value=1.3e+02 Score=20.58 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
.+-.+|+|.|+-.--+.|..-+...|++--+||..|+..
T Consensus 39 ~t~k~i~v~I~~~~K~~L~~lc~~~GlTQae~IE~LI~~ 77 (84)
T PF10723_consen 39 ETHKRINVFIPNELKERLEELCKEQGLTQAEMIERLIKS 77 (84)
T ss_dssp --EEEEEEEEEHHHHHHHHHHHHHS---HHHHHHHHHHH
T ss_pred hhcCeeEEEECHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345689999986544444444455689999999988765
No 41
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=25.57 E-value=90 Score=19.77 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEeHHHHHHHHhccCCCCCcHHHHHHHH
Q 033262 64 IKITKKQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 64 IvITKqEL~~LL~k~~~~g~slEqvL~~L 92 (123)
+-+|.+||++.+.+. |.+...|-..|
T Consensus 30 ~gvt~~~L~~AV~~v---G~~~~~V~~~L 55 (57)
T PF12244_consen 30 FGVTEEQLREAVRAV---GNSRAAVRAYL 55 (57)
T ss_pred HCcCHHHHHHHHHHH---CcCHHHHHHHH
Confidence 447889999999887 56776665544
No 42
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=25.35 E-value=73 Score=16.68 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=8.7
Q ss_pred EEeHHHHHHHH
Q 033262 65 KITKKQLEELL 75 (123)
Q Consensus 65 vITKqEL~~LL 75 (123)
.||.+|+++|+
T Consensus 15 ~is~~E~~~~~ 25 (25)
T PF13202_consen 15 KISFEEFQRLV 25 (25)
T ss_dssp EEEHHHHHHHH
T ss_pred cCCHHHHHHHC
Confidence 48889988875
No 43
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.12 E-value=53 Score=24.88 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=17.0
Q ss_pred EeHHHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 66 ITKKQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 66 ITKqEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
=||.||++||.+. .-+|+-|.-|.+
T Consensus 14 ~~kaEL~elikkr----qe~eetl~nLe~ 38 (135)
T KOG3856|consen 14 DTKAELAELIKKR----QELEETLANLER 38 (135)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4899999999877 234555554543
No 44
>COG4628 Uncharacterized conserved protein [Function unknown]
Probab=24.91 E-value=90 Score=23.49 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred EeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 66 ITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 66 ITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
+|-+|--+++.+..-+|+++|++|.+|...
T Consensus 1 m~~~er~e~~~~nPLHGltLE~llt~Lvd~ 30 (136)
T COG4628 1 MTDQERIELQKNNPLHGLTLETLLTELVDF 30 (136)
T ss_pred CchHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 355666666666556899999999999764
No 45
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.87 E-value=1e+02 Score=20.69 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L 92 (123)
++|++++.+...+.++|++.+...
T Consensus 13 ~~LE~IV~~LE~~~l~Leesl~~y 36 (75)
T PRK14064 13 AELETIVEALENGSASLEDSLDMY 36 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 579999998888889999887654
No 46
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=24.72 E-value=1.1e+02 Score=22.05 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.7
Q ss_pred EEeHHHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 65 KITKKQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 65 vITKqEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
.+|.+|++.+|.....--.+.+|++..|-
T Consensus 46 lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 46 LVTEKEIKEILGEGQGITRTREQVVDVLS 74 (99)
T ss_pred cccHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 58999999999886533378899988663
No 47
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=24.27 E-value=80 Score=21.99 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=12.7
Q ss_pred EEeHHHHHHHHhccC
Q 033262 65 KITKKQLEELLGKAD 79 (123)
Q Consensus 65 vITKqEL~~LL~k~~ 79 (123)
-+|+.||..+|.+.+
T Consensus 35 ~~t~~el~~~l~~~~ 49 (112)
T cd03034 35 PPTAAELRELLAKLG 49 (112)
T ss_pred CcCHHHHHHHHHHcC
Confidence 389999999998773
No 48
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.63 E-value=52 Score=22.32 Aligned_cols=11 Identities=64% Similarity=0.809 Sum_probs=9.1
Q ss_pred HHHHHHHHhcc
Q 033262 68 KKQLEELLGKA 78 (123)
Q Consensus 68 KqEL~~LL~k~ 78 (123)
|++|++||.+.
T Consensus 1 k~~L~~l~~~k 11 (80)
T PF09340_consen 1 KKELKELLQKK 11 (80)
T ss_pred CHHHHHHHHHH
Confidence 67899999876
No 49
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.17 E-value=1.2e+02 Score=20.28 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=19.4
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L 92 (123)
++|++++.+...+.++|++.+...
T Consensus 2 ~~LEeIV~~LE~gel~Leesl~ly 25 (69)
T PRK14070 2 KELEEIVNRLENEDLPLEESIKLF 25 (69)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 478999998888888998877644
No 50
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.15 E-value=1.1e+02 Score=21.75 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=19.5
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHL 92 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L 92 (123)
++|++++.+...+.++||+.+...
T Consensus 15 ~~LEeIV~~LEsgdl~LEesl~ly 38 (95)
T PRK14069 15 RELEQIAEKLERQDFSLEESLKAY 38 (95)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Confidence 579999998888889998877644
No 51
>PF08586 Rsc14: RSC complex, Rsc14/Ldb7 subunit; InterPro: IPR013895 RSC is an ATP-dependent chromatin remodelling complex found in yeast. The RSC components Rsc7/Npl6 and Rsc14/Ldb7 interact physically and/or functionally with Rsc3, Rsc30, and Htl1 to form a module important for a broad range of RSC functions [].
Probab=23.13 E-value=49 Score=23.98 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.6
Q ss_pred EEEEEeHHHHHHHHhcc
Q 033262 62 IKIKITKKQLEELLGKA 78 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~ 78 (123)
=+|++|++||++|..+.
T Consensus 17 ~~Vtfs~~eL~eLt~~~ 33 (101)
T PF08586_consen 17 HQVTFSQEELQELTKQE 33 (101)
T ss_pred cccccCHHHHHHHHhch
Confidence 36899999999999765
No 52
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=22.98 E-value=2e+02 Score=17.89 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=24.4
Q ss_pred EEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 63 KIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 63 KIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+|.++.+.+.++|... ++.+++..-|.+.+.
T Consensus 3 ~i~~~~~~i~~llG~~----i~~~ei~~~L~~lg~ 33 (71)
T smart00874 3 TITLRRERINRLLGLD----LSAEEIEEILKRLGF 33 (71)
T ss_pred EEEecHHHHHHHHCCC----CCHHHHHHHHHHCCC
Confidence 5788999999999764 677888887777763
No 53
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.80 E-value=1.2e+02 Score=20.76 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 69 KQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 69 qEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
++|++++.+...+.++|++.+....
T Consensus 14 ~~LEeIV~~LE~~~l~Lees~~lye 38 (80)
T PRK14067 14 ARLQEIVDALEGGDLPLEESVALYK 38 (80)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5799999988888899998776543
No 54
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.71 E-value=89 Score=24.23 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=27.0
Q ss_pred EEeHHHHHHHHhc-cCCCCCcHHHHHHHHHhccc
Q 033262 65 KITKKQLEELLGK-ADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 65 vITKqEL~~LL~k-~~~~g~slEqvL~~L~~~~~ 97 (123)
+-|=+||+.++.+ .+....+|.++|..|+.-+.
T Consensus 11 ~y~lKELEK~~pK~~gI~~~~VKdvlq~LvDDgl 44 (188)
T PF03962_consen 11 FYTLKELEKLAPKEKGIVSMSVKDVLQSLVDDGL 44 (188)
T ss_pred cccHHHHHHHcccccCCchhhHHHHHHHHhcccc
Confidence 3577899999998 45566889999999998764
No 55
>PF02406 MmoB_DmpM: MmoB/DmpM family ; InterPro: IPR003454 This family consists of monooxygenase components such as MmoB methane monooxygenase (1.14.13.25 from EC) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilises intermediates required for the activation of dioxygen []. Also found in this family is DmpM or Phenol hydroxylase (1.14.13.7 from EC) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase []. Phenol hydroxylase catabolises phenol and some of its methylated derivatives in the first step of phenol biodegradation, and is required for growth on phenol. The multicomponent enzyme is made up of P0, P1, P2, P3, P4 and P5 polypeptides.; GO: 0004497 monooxygenase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2INN_L 2INP_L 1CKV_A 3Q3M_H 3GE3_E 1G11_A 2BF2_B 3I5J_E 3Q3O_E 3I63_E ....
Probab=22.15 E-value=1e+02 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=21.3
Q ss_pred CceEE----EEEEeHHHHHHHHhccCCCCCcHHHHHH
Q 033262 58 SSTEI----KIKITKKQLEELLGKADVKGLSVQQVLA 90 (123)
Q Consensus 58 ~~vrV----KIvITKqEL~~LL~k~~~~g~slEqvL~ 90 (123)
+-+|| +|+|++.+|++.|.+. ..+.++.-
T Consensus 35 a~vrI~a~g~l~i~~~tiee~LGr~----~~~~el~v 67 (87)
T PF02406_consen 35 AYVRIDAPGRLVIRRETIEEALGRP----FDLQELEV 67 (87)
T ss_dssp SEEEEEESSEEEEEHHHHHHHCTST----CHHHHHHH
T ss_pred CEEEEecCCeEEEEHHHHHHHhCCC----CcHHHHhh
Confidence 44555 6899999999999775 56665543
No 56
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=21.82 E-value=1.7e+02 Score=22.06 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.9
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
...+.|-+|+++|..+|.-. ..++--+|.+|.+.++
T Consensus 167 ~~~~~i~~t~~~iA~~lG~t---retvsR~l~~L~~~gl 202 (236)
T PRK09392 167 ADVVTLPYEKRVLASYLGMT---PENLSRAFAALASHGV 202 (236)
T ss_pred CcEEEeeCCHHHHHHHhCCC---hhHHHHHHHHHHhCCe
Confidence 44688889999999999443 4567778888888774
No 57
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=21.47 E-value=72 Score=19.95 Aligned_cols=51 Identities=24% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHh-ccC-CCCCcHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCC
Q 033262 68 KKQLEELLG-KAD-VKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPE 121 (123)
Q Consensus 68 KqEL~~LL~-k~~-~~g~slEqvL~~L~~~~~~~~~~~~~~~~~~~WrPaLeSIPE 121 (123)
+++|.++|. ..+ .+++++.++-..+.+.- ..-.. ..-....++.-|+++|+
T Consensus 7 ~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~-~~f~~--~~yG~~~l~~ll~~~~~ 59 (74)
T PF12872_consen 7 KKLLRELLESQKGEDGWVSLSQLGQEYKKKY-PDFDP--RDYGFSSLSELLESLPD 59 (74)
T ss_dssp HHHHHHHHHHTCTTTSSEEHHHHHHHHHHHH-TT--T--CCTTSSSHHHHHHT-TT
T ss_pred HHHHHHHHHhCcCCCceEEHHHHHHHHHHHC-CCCCc--cccCCCcHHHHHHhCCC
Confidence 678888883 333 23588998888886654 11111 12345678888877775
No 58
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=21.11 E-value=87 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcc
Q 033262 85 VQQVLAHLINVN 96 (123)
Q Consensus 85 lEqvL~~L~~~~ 96 (123)
++++|..|.+.+
T Consensus 42 l~kil~~L~~~g 53 (135)
T TIGR02010 42 LEQLFAKLRKAG 53 (135)
T ss_pred HHHHHHHHHHCC
Confidence 444444444444
No 59
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=20.44 E-value=2.2e+02 Score=21.83 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=31.8
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
.+-..|++++|-.|...|..+...-|+|+-+.+.++...
T Consensus 22 ~~~kvVsvRLTe~Ey~~L~~rA~~aGlS~SEfIRqAi~~ 60 (147)
T PRK13858 22 EGFKVVSTRLRSAEYESFSAQARLLGLSDSMAIRVAVRR 60 (147)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 355669999999999999998877778888888777654
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=20.26 E-value=1e+02 Score=16.70 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=10.6
Q ss_pred EEeHHHHHHHHhc
Q 033262 65 KITKKQLEELLGK 77 (123)
Q Consensus 65 vITKqEL~~LL~k 77 (123)
.|+.+|+..+|.+
T Consensus 16 ~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 16 KIDFEEFKEMMKK 28 (29)
T ss_dssp EEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh
Confidence 4889999998864
No 61
>PF11410 Antifungal_pept: Antifungal peptide; InterPro: IPR024206 This peptide has six cysteines involved in three disulphide bonds. The presence of a 'disulphide through disulphide knot' structurally defines this protein as a knottin: the peptide contains a global fold which involves a cysteine-knotted three-stranded antiparallel beta-sheet along with a flexible loop and four beta-reverse turns. It also has an amphiphilic character which is the main structural basis of its biological function []. The peptides in this entry belong to the AMP family. ; PDB: 1DKC_A 1Q3J_A.
Probab=20.13 E-value=38 Score=20.30 Aligned_cols=6 Identities=67% Similarity=1.381 Sum_probs=2.1
Q ss_pred CCCccc
Q 033262 1 MGNCIR 6 (123)
Q Consensus 1 MGNC~~ 6 (123)
||||+-
T Consensus 14 ~g~CcS 19 (36)
T PF11410_consen 14 MGNCCS 19 (36)
T ss_dssp S---TT
T ss_pred Cccccc
Confidence 788875
Done!