Query 033262
Match_columns 123
No_of_seqs 114 out of 138
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 19:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba3_A NIKA; dimer, bacterial 86.2 1.5 5.1E-05 25.8 4.6 37 57-93 13-49 (51)
2 2k9i_A Plasmid PRN1, complete 71.9 6.8 0.00023 22.5 4.2 39 57-95 7-45 (55)
3 1h3o_B Transcription initiatio 65.4 3.4 0.00012 27.3 2.0 30 65-94 5-37 (76)
4 1p94_A Plasmid partition prote 41.3 26 0.0009 22.7 3.3 41 55-95 30-70 (76)
5 2zcw_A TTHA1359, transcription 39.6 25 0.00086 24.3 3.2 35 60-97 141-175 (202)
6 3nxa_A Protein S100-A16; S100 35.7 26 0.00087 22.8 2.6 12 66-77 31-42 (100)
7 3ryp_A Catabolite gene activat 35.1 30 0.001 23.8 3.0 33 62-97 164-196 (210)
8 1vp7_A Exodeoxyribonuclease VI 34.8 31 0.0011 23.7 3.0 28 67-94 35-62 (100)
9 3e6c_C CPRK, cyclic nucleotide 34.8 25 0.00087 25.2 2.7 37 58-97 170-206 (250)
10 3d0s_A Transcriptional regulat 34.3 26 0.00089 24.5 2.6 36 59-97 171-206 (227)
11 2oz6_A Virulence factor regula 33.8 33 0.0011 23.5 3.0 33 62-97 161-193 (207)
12 2fmy_A COOA, carbon monoxide o 33.6 25 0.00086 24.6 2.5 37 58-97 160-196 (220)
13 2an7_A Protein PARD; bacterial 33.2 38 0.0013 22.8 3.1 37 60-96 2-38 (83)
14 3iwz_A CAP-like, catabolite ac 32.8 35 0.0012 23.7 3.1 33 62-97 184-216 (230)
15 1ft9_A Carbon monoxide oxidati 31.9 23 0.00078 24.9 2.0 36 59-97 157-192 (222)
16 3la7_A Global nitrogen regulat 31.2 25 0.00084 25.3 2.1 36 59-97 187-222 (243)
17 3b02_A Transcriptional regulat 30.9 28 0.00096 24.0 2.3 33 62-97 136-168 (195)
18 5pal_A Parvalbumin; calcium-bi 30.7 48 0.0016 20.4 3.2 27 66-92 6-33 (109)
19 3nso_A Protein S100-A3; EF-han 29.8 31 0.0011 22.7 2.3 13 65-77 28-40 (101)
20 4drw_A Protein S100-A10/annexi 29.2 39 0.0013 23.1 2.8 12 66-77 31-42 (121)
21 1rwy_A Parvalbumin alpha; EF-h 29.1 56 0.0019 20.0 3.3 27 66-92 6-33 (109)
22 3fs7_A Parvalbumin, thymic; ca 29.1 53 0.0018 20.2 3.2 28 65-92 6-34 (109)
23 3kcc_A Catabolite gene activat 28.7 41 0.0014 24.5 3.0 33 62-97 214-246 (260)
24 1rro_A RAT oncomodulin; calciu 28.5 55 0.0019 20.1 3.2 27 66-92 6-33 (108)
25 2kyc_A Parvalbumin-3, parvalbu 28.3 58 0.002 20.0 3.3 27 66-92 6-33 (108)
26 1zyb_A Transcription regulator 27.8 44 0.0015 23.7 2.9 34 61-97 182-215 (232)
27 2cpg_A REPA protein, transcrip 26.5 83 0.0028 17.0 3.7 36 60-95 3-38 (45)
28 1q3j_A ALO3; peptide, knottin, 24.9 20 0.00068 20.6 0.5 6 1-6 14-19 (36)
29 1dkc_A PAFP-S, antifungal pept 24.5 21 0.00072 20.8 0.5 6 1-6 16-21 (38)
30 2k5j_A Uncharacterized protein 24.0 99 0.0034 19.6 3.9 36 59-94 9-44 (80)
31 1bu3_A Calcium-binding protein 23.8 76 0.0026 19.4 3.2 28 65-92 6-34 (109)
32 2pvb_A Protein (parvalbumin); 23.7 76 0.0026 19.4 3.2 27 66-92 6-33 (108)
33 4ev0_A Transcription regulator 23.6 44 0.0015 23.0 2.2 34 61-97 159-192 (216)
34 2bgc_A PRFA; bacterial infecti 23.4 47 0.0016 23.6 2.4 35 60-97 163-199 (238)
35 2lma_A THP5 peptide; CD4+, imm 23.4 10 0.00034 20.2 -0.9 7 112-118 1-7 (26)
36 2kax_A Protein S100-A5; EF-han 23.4 1.2E+02 0.004 18.6 4.1 13 65-77 28-40 (92)
37 1pva_A Parvalbumin; calcium bi 23.1 81 0.0028 19.3 3.2 27 66-92 7-34 (110)
38 1iq3_A Ralbp1-interacting prot 22.2 88 0.003 20.4 3.4 27 66-92 53-82 (110)
39 2gau_A Transcriptional regulat 21.1 27 0.00091 24.6 0.6 36 59-97 174-209 (232)
40 3fx3_A Cyclic nucleotide-bindi 21.1 33 0.0011 24.2 1.1 37 58-97 171-207 (237)
41 3e97_A Transcriptional regulat 20.9 41 0.0014 23.5 1.6 35 60-97 170-204 (231)
42 1wjx_A Small protein B, SSRA-b 20.9 33 0.0011 24.5 1.1 27 58-84 72-98 (122)
43 1dml_A DNA polymerase processi 20.8 57 0.0019 26.8 2.6 15 62-76 176-190 (319)
44 3dv8_A Transcriptional regulat 20.3 46 0.0016 22.9 1.8 33 62-97 166-198 (220)
No 1
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=86.18 E-value=1.5 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=31.1
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHH
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLI 93 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~ 93 (123)
.....|.|+||-+|.+.|-.+....|+++.+.+..+.
T Consensus 13 ~r~~~i~vRlt~eE~~~l~~~A~~~g~s~SeyiR~~~ 49 (51)
T 2ba3_A 13 QKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYIRNAA 49 (51)
T ss_dssp CCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceeEEEEECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4577899999999999999988777889988877653
No 2
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=71.90 E-value=6.8 Score=22.54 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
...++|-|+|+...+++|-......|.|..+++.+.+..
T Consensus 7 ~~~~~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~ 45 (55)
T 2k9i_A 7 LNGIKLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKE 45 (55)
T ss_dssp TCCEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccceEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 457889999999998888776655678988888776554
No 3
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=65.40 E-value=3.4 Score=27.28 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=22.3
Q ss_pred EEeHHHHHHHHhccCCCC---CcHHHHHHHHHh
Q 033262 65 KITKKQLEELLGKADVKG---LSVQQVLAHLIN 94 (123)
Q Consensus 65 vITKqEL~~LL~k~~~~g---~slEqvL~~L~~ 94 (123)
++||+.|++|+.+.+.+. ..+|++|.+|..
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lAD 37 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIAD 37 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 579999999999886543 346777776644
No 4
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=41.31 E-value=26 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 55 SAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 55 ~~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
......|+.|.|+...=++|=..+...|.|+-|||.+|+..
T Consensus 30 ~~~~~~Rlti~i~~~lh~rlK~~Aa~~g~Smsdvvreli~~ 70 (76)
T 1p94_A 30 SSGKIKRVNVNFDEEKHTRFKAACARKGTSITDVVNQLVDN 70 (76)
T ss_dssp STTCEEECCEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccCceeEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45578999999997544444333333479999999998764
No 5
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=39.61 E-value=25 Score=24.29 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=27.4
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
..+.+.||+++|..+|.-. ..++--+|..|.+.++
T Consensus 141 ~~~~~~~t~~~lA~~lg~s---r~tvsR~l~~L~~~g~ 175 (202)
T 2zcw_A 141 GKVVLKATHDELAAAVGSV---RETVTKVIGELAREGY 175 (202)
T ss_dssp TEEEEECCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred cEEccCCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 4688999999999999543 4567778888888764
No 6
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Probab=35.74 E-value=26 Score=22.84 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=8.1
Q ss_pred EeHHHHHHHHhc
Q 033262 66 ITKKQLEELLGK 77 (123)
Q Consensus 66 ITKqEL~~LL~k 77 (123)
||++||+.+|..
T Consensus 31 Is~~EL~~~l~~ 42 (100)
T 3nxa_A 31 ISKSSFREMLQK 42 (100)
T ss_dssp BCHHHHHHHHHH
T ss_pred EcHHHHHHHHHH
Confidence 677777777654
No 7
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=35.11 E-value=30 Score=23.77 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=25.9
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.+.+|+++|..+|.-. ..++--+|..|.+.|.
T Consensus 164 ~~~~~t~~~iA~~lg~s---r~tvsR~l~~L~~~g~ 196 (210)
T 3ryp_A 164 MQIKITRQEIGQIVGCS---RETVGRILKMLEDQNL 196 (210)
T ss_dssp EEEECCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred eEeccCHHHHHHHhCCc---HHHHHHHHHHHHHCCc
Confidence 77889999999999433 4567778888888774
No 8
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=34.83 E-value=31 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=22.8
Q ss_pred eHHHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 67 TKKQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 67 TKqEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
.-++|++++.+...+.++||+.|....+
T Consensus 35 al~eLEeIV~~LE~gel~LEesl~lyee 62 (100)
T 1vp7_A 35 ALAELESLVSAMENGTLPLEQSLSAYRR 62 (100)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3578999999998889999998875543
No 9
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=34.80 E-value=25 Score=25.21 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=28.0
Q ss_pred CceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 58 SSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 58 ~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
....+.+.+|+++|..+|.-. ..++--+|..|.+.|+
T Consensus 170 ~~~~i~~~~t~~~iA~~lG~s---r~tvsR~l~~L~~~g~ 206 (250)
T 3e6c_C 170 DTYEITMPLSQKSIGEITGVH---HVTVSRVLASLKRENI 206 (250)
T ss_dssp TEEEEECCCCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred CCcEecCCCCHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 456788899999999999433 3466777888877764
No 10
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=34.26 E-value=26 Score=24.54 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=27.5
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
...+.+.||+++|..+|.-. ..++--+|..|.+.++
T Consensus 171 ~~~i~~~~t~~~lA~~lg~s---r~tvsR~l~~l~~~g~ 206 (227)
T 3d0s_A 171 ALRVTHDLTQEEIAQLVGAS---RETVNKALADFAHRGW 206 (227)
T ss_dssp EEEEECCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred ceEEcCCCCHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 45688889999999999433 3567778888888764
No 11
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.75 E-value=33 Score=23.49 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=26.1
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.+.+|+++|..+|.-. ..++--+|..|.+.|.
T Consensus 161 ~~~~~t~~~lA~~lg~s---r~tvsR~l~~l~~~g~ 193 (207)
T 2oz6_A 161 MQIKITRQEIGRIVGCS---REMVGRVLKSLEEQGL 193 (207)
T ss_dssp EEEECCHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred eecccCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 77889999999999443 4567778888888774
No 12
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=33.58 E-value=25 Score=24.56 Aligned_cols=37 Identities=11% Similarity=0.362 Sum_probs=28.5
Q ss_pred CceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 58 SSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 58 ~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+...+.+.+|+++|..+|.-. ..++--+|..|.+.++
T Consensus 160 ~~~~~~~~~t~~~lA~~lg~s---r~tvsR~l~~l~~~g~ 196 (220)
T 2fmy_A 160 QGIKLELGLNTEEIALMLGTT---RQTVSVLLNDFKKMGI 196 (220)
T ss_dssp TEEEEECSSCHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred CcEEEeccCCHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 346788999999999999433 3567778888888774
No 13
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=33.17 E-value=38 Score=22.76 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=25.6
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhcc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVN 96 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~ 96 (123)
.|+.|.|+.++=++|=.-....|.|+.|++.++..-+
T Consensus 2 SrLTIrLpd~qH~rLKalAa~qG~SInqli~E~lf~~ 38 (83)
T 2an7_A 2 SRLTIDMTDQQHQSLKALAALQGKTIKQYALERLFPG 38 (83)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTSCHHHHHHHHTSCC
T ss_pred ceeeEeCCHHHHHHHHHHHHHcCCcHHHHHHHHcccC
Confidence 4789999998765554333334788888888775543
No 14
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.75 E-value=35 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=25.7
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.|.||+++|..+|.-. ..+|--+|..|.+.|+
T Consensus 184 ~~~~lt~~~lA~~lg~s---r~tvsR~l~~L~~~g~ 216 (230)
T 3iwz_A 184 TQLRVSRQELARLVGCS---REMAGRVLKKLQADGL 216 (230)
T ss_dssp EEEECCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred eecCCCHHHHHHHhCCc---HHHHHHHHHHHHHCCC
Confidence 67889999999999433 4567778888888774
No 15
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=31.95 E-value=23 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=27.9
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
...+.+.+|+++|..+|.-. ..++--+|..|.+.++
T Consensus 157 ~~~~~~~~t~~~lA~~lG~s---r~tvsR~l~~L~~~g~ 192 (222)
T 1ft9_A 157 GVIVSVDFTVEEIANLIGSS---RQTTSTALNSLIKEGY 192 (222)
T ss_dssp CCCCEECCCHHHHHHHHCSC---HHHHHHHHHHHHHTTS
T ss_pred cEEEeccCCHHHHHHHhCCc---HHHHHHHHHHHHHCCc
Confidence 35688999999999999433 3467778888888774
No 16
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=31.15 E-value=25 Score=25.32 Aligned_cols=36 Identities=19% Similarity=0.453 Sum_probs=28.1
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
...+.+.+|+++|..+|.-. ..+|--+|..|.+.++
T Consensus 187 ~~~i~~~lt~~~lA~~lG~s---r~tvsR~l~~L~~~Gl 222 (243)
T 3la7_A 187 GITIDLKLSHQAIAEAIGST---RVTVTRLLGDLREKKM 222 (243)
T ss_dssp SEEECSCCCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred CeEEeccCCHHHHHHHHCCc---HHHHHHHHHHHHHCCC
Confidence 46788899999999999533 4567778888888774
No 17
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=30.89 E-value=28 Score=23.96 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.9
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.+.+|+++|..+|.-. ..++--+|..|.+.++
T Consensus 136 ~~~~~t~~~lA~~lg~s---r~tvsR~l~~L~~~g~ 168 (195)
T 3b02_A 136 IYVTVSHEEIADATASI---RESVSKVLADLRREGL 168 (195)
T ss_dssp EEEECCHHHHHHTTTSC---HHHHHHHHHHHHHHTS
T ss_pred eeccCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 88999999999999433 3466778888887764
No 18
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=30.69 E-value=48 Score=20.39 Aligned_cols=27 Identities=0% Similarity=0.114 Sum_probs=19.5
Q ss_pred EeHHHHHHHHhccCC-CCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKADV-KGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~~-~g~slEqvL~~L 92 (123)
+|++|+++|+...+. +.+++++.+..+
T Consensus 6 ~s~~ei~~~~~~~d~~g~i~~~eF~~~~ 33 (109)
T 5pal_A 6 LKADDINKAISAFKDPGTFDYKRFFHLV 33 (109)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCcHHHHHHHH
Confidence 678888888876643 447888877755
No 19
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=29.80 E-value=31 Score=22.73 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=8.0
Q ss_pred EEeHHHHHHHHhc
Q 033262 65 KITKKQLEELLGK 77 (123)
Q Consensus 65 vITKqEL~~LL~k 77 (123)
.||++||+.+|..
T Consensus 28 ~Is~~EL~~~l~~ 40 (101)
T 3nso_A 28 KLCQAELKELLQK 40 (101)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 3666666666653
No 20
>4drw_A Protein S100-A10/annexin A2 chimeric protein; atypical EF-hand, heteropentameric complex, membrane repair; 3.50A {Homo sapiens}
Probab=29.24 E-value=39 Score=23.14 Aligned_cols=12 Identities=42% Similarity=0.620 Sum_probs=9.5
Q ss_pred EeHHHHHHHHhc
Q 033262 66 ITKKQLEELLGK 77 (123)
Q Consensus 66 ITKqEL~~LL~k 77 (123)
||++||+.+|.+
T Consensus 31 Is~~EL~~~l~~ 42 (121)
T 4drw_A 31 LTKEDLRVLMEK 42 (121)
T ss_dssp CCHHHHHHHTTT
T ss_pred EcHHHHHHHHHH
Confidence 888888888764
No 21
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=29.09 E-value=56 Score=19.99 Aligned_cols=27 Identities=4% Similarity=0.293 Sum_probs=17.6
Q ss_pred EeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
+|++|+++|+...+ .+.+++++.+..+
T Consensus 6 ~t~~e~~~~~~~~d~~g~i~~~eF~~~~ 33 (109)
T 1rwy_A 6 LSAEDIKKAIGAFTAADSFDHKKFFQMV 33 (109)
T ss_dssp SCHHHHHHHHHTTCSTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCcEeHHHHHHHH
Confidence 57777887777654 2346777766644
No 22
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=29.09 E-value=53 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 65 KITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 65 vITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
.+|++|+++|+...+ .+.+++++.+..+
T Consensus 6 ~~~~~ei~~~~~~~D~~g~i~~~eF~~~~ 34 (109)
T 3fs7_A 6 ILSAKDIESALSSCQAADSFNYKSFFSTV 34 (109)
T ss_dssp TSCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCCcCcHHHHHHHH
Confidence 368889999998765 3447888887755
No 23
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=28.73 E-value=41 Score=24.48 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=26.0
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.|.||+++|..+|.-. ..++--+|..|.+.++
T Consensus 214 ~~l~lt~~~lA~~lG~s---r~tvsR~l~~L~~~Gl 246 (260)
T 3kcc_A 214 MQIKITRQEIGQIVGCS---RETVGRILKMLEDQNL 246 (260)
T ss_dssp EEEECCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred eeecCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 77889999999999443 4567778888888774
No 24
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=28.52 E-value=55 Score=20.06 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=19.7
Q ss_pred EeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
+|++|+++|+...+ .+.+++++.+..+
T Consensus 6 ~t~~e~~~~~~~~d~~g~i~~~eF~~~~ 33 (108)
T 1rro_A 6 LSAEDIAAALQECQDPDTFEPQKFFQTS 33 (108)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHccCCCCcCHHHHHHHH
Confidence 57888999888764 3447888877655
No 25
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=28.34 E-value=58 Score=19.95 Aligned_cols=27 Identities=7% Similarity=0.190 Sum_probs=21.2
Q ss_pred EeHHHHHHHHhccCC-CCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKADV-KGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~~-~g~slEqvL~~L 92 (123)
+|++|+++|+...+. +.+++++.+..+
T Consensus 6 ~~~~e~~~l~~~~d~~g~i~~~eF~~~~ 33 (108)
T 2kyc_A 6 LSPSDIAAALRDCQAPDSFSPKKFFQIS 33 (108)
T ss_dssp SCHHHHHHHHTTSCSTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCcCCHHHHHHHH
Confidence 689999999987653 448899988765
No 26
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=27.84 E-value=44 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.9
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
.+.+.+|+++|..+|.-. ..++--+|..|.+.++
T Consensus 182 ~~~~~~t~~~lA~~lG~s---r~tvsR~l~~l~~~gl 215 (232)
T 1zyb_A 182 EKTFKVKMDDLARCLDDT---RLNISKTLNELQDNGL 215 (232)
T ss_dssp CEEEECCHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred eEEecCCHHHHHHHhCCC---hhHHHHHHHHHHHCCC
Confidence 688999999999999433 3467778888888774
No 27
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=26.51 E-value=83 Score=16.99 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.1
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINV 95 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~ 95 (123)
.||.|.|....+++|=......|.|-.+++.+.+..
T Consensus 3 ~ritv~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~ 38 (45)
T 2cpg_A 3 KRLTITLSESVLENLEKMAREMGLSKSAMISVALEN 38 (45)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899998888777665544467888888766554
No 28
>1q3j_A ALO3; peptide, knottin, cystine-knot, antifungal protein; NMR {Synthetic} SCOP: g.3.4.2
Probab=24.88 E-value=20 Score=20.64 Aligned_cols=6 Identities=50% Similarity=1.088 Sum_probs=5.0
Q ss_pred CCCccc
Q 033262 1 MGNCIR 6 (123)
Q Consensus 1 MGNC~~ 6 (123)
||||+-
T Consensus 14 ~g~CcS 19 (36)
T 1q3j_A 14 QGNCCS 19 (36)
T ss_dssp SCCCTT
T ss_pred Cccccc
Confidence 899985
No 29
>1dkc_A PAFP-S, antifungal peptide; three-strands beta sheet, antifungal protein; NMR {Phytolacca americana} SCOP: g.3.4.2
Probab=24.47 E-value=21 Score=20.77 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=5.0
Q ss_pred CCCccc
Q 033262 1 MGNCIR 6 (123)
Q Consensus 1 MGNC~~ 6 (123)
||||+-
T Consensus 16 ~g~CcS 21 (38)
T 1dkc_A 16 PPYCCS 21 (38)
T ss_dssp CCCCSS
T ss_pred Cccccc
Confidence 899985
No 30
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=24.02 E-value=99 Score=19.59 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=27.1
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHh
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLIN 94 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~ 94 (123)
..||-|.|....+++|=.-....|.|-.+++.+.+.
T Consensus 9 m~risI~Lpdel~~~Ld~la~~~g~srselireAi~ 44 (80)
T 2k5j_A 9 MGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD 44 (80)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 568999999988888776554456788888776554
No 31
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=23.76 E-value=76 Score=19.41 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 65 KITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 65 vITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
.+|++|+++|+...+ .+.+++++.+..+
T Consensus 6 ~~~~~e~~~~~~~~d~~g~i~~~eF~~~~ 34 (109)
T 1bu3_A 6 ILADADVAAALKACEAADSFNYKAFFAKV 34 (109)
T ss_dssp SSCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCcCcHHHHHHHH
Confidence 367888888887664 2447788777654
No 32
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=23.73 E-value=76 Score=19.37 Aligned_cols=27 Identities=7% Similarity=0.258 Sum_probs=19.2
Q ss_pred EeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
+|++|+++|+...+ .+.+++++.+..+
T Consensus 6 ~~~~e~~~l~~~~d~~g~i~~~eF~~~~ 33 (108)
T 2pvb_A 6 LKDADVAAALAACSAADSFKHKEFFAKV 33 (108)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCcHHHHHHHH
Confidence 57888888887765 2447888877655
No 33
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.59 E-value=44 Score=22.97 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.4
Q ss_pred EEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 61 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 61 rVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
.+.+.+|+++|..+|.-. ..++--+|.+|.+.|.
T Consensus 159 ~~~~~~t~~~lA~~lg~s---r~tvsR~l~~l~~~g~ 192 (216)
T 4ev0_A 159 GPLFQIRHHELAALAGTS---RETVSRVLHALAEEGV 192 (216)
T ss_dssp CSEEECCHHHHHHHHTSC---HHHHHHHHHHHHHTTS
T ss_pred ccCCCCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 367889999999999433 3567778888888774
No 34
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=23.38 E-value=47 Score=23.61 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.8
Q ss_pred eEEEE-EEeHHHHHHHHhccCCCC-CcHHHHHHHHHhccc
Q 033262 60 TEIKI-KITKKQLEELLGKADVKG-LSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKI-vITKqEL~~LL~k~~~~g-~slEqvL~~L~~~~~ 97 (123)
..+.+ .+|+++|..+|.-. . .+|--+|..|.+.++
T Consensus 163 ~~i~~~~~t~~~lA~~lG~s---r~etvsR~l~~l~~~gl 199 (238)
T 2bgc_A 163 IKITLDNLTMQELGYSSGIA---HSSAVSRIISKLKQEKV 199 (238)
T ss_dssp EEECCSCCCHHHHHHHTTCC---CHHHHHHHHHHHHHTTS
T ss_pred eEEEeccCCHHHHHHHhCCC---hHHHHHHHHHHHHHCCC
Confidence 46778 89999999999543 4 378888999988774
No 35
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=23.37 E-value=10 Score=20.16 Aligned_cols=7 Identities=71% Similarity=1.545 Sum_probs=5.6
Q ss_pred CCCCCCC
Q 033262 112 WRPALQS 118 (123)
Q Consensus 112 WrPaLeS 118 (123)
|||-||+
T Consensus 1 wrpylqt 7 (26)
T 2lma_A 1 WRPYLQT 7 (26)
T ss_dssp CCTTHHH
T ss_pred CCccccc
Confidence 9998874
No 36
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A
Probab=23.36 E-value=1.2e+02 Score=18.64 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=9.4
Q ss_pred EEeHHHHHHHHhc
Q 033262 65 KITKKQLEELLGK 77 (123)
Q Consensus 65 vITKqEL~~LL~k 77 (123)
.||++||+.+|..
T Consensus 28 ~I~~~El~~~l~~ 40 (92)
T 2kax_A 28 TLSRKELKELIKK 40 (92)
T ss_dssp EEEHHHHHHHHHH
T ss_pred eeCHHHHHHHHHH
Confidence 4777888777764
No 37
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=23.08 E-value=81 Score=19.26 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=19.1
Q ss_pred EeHHHHHHHHhccC-CCCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKAD-VKGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~-~~g~slEqvL~~L 92 (123)
+|++||++|+...+ .+.+++++.+..+
T Consensus 7 ~t~~e~~~~~~~~d~~g~i~~~ef~~~~ 34 (110)
T 1pva_A 7 LKADDIKKALDAVKAEGSFNHKKFFALV 34 (110)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCcCcHHHHHHHH
Confidence 67888888887664 3447777777654
No 38
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.23 E-value=88 Score=20.45 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=16.4
Q ss_pred EeHHHHHHHHhccCC---CCCcHHHHHHHH
Q 033262 66 ITKKQLEELLGKADV---KGLSVQQVLAHL 92 (123)
Q Consensus 66 ITKqEL~~LL~k~~~---~g~slEqvL~~L 92 (123)
+|..+|++|+...+. +.+++++.+..+
T Consensus 53 l~~~el~~i~~~~D~d~dG~I~~~EF~~~m 82 (110)
T 1iq3_A 53 LSIPELSYIWELSDADCDGALTLPEFCAAF 82 (110)
T ss_dssp CSSCCHHHHHHHHCSSSCSEEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCcHHHHHHHH
Confidence 456666666665432 347888876654
No 39
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=21.12 E-value=27 Score=24.58 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=27.2
Q ss_pred ceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 59 STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 59 ~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
...+.+.+|+++|..+|.-. ..++--+|..|.+.|+
T Consensus 174 ~~~~~~~~t~~~lA~~lg~s---r~tvsR~l~~l~~~g~ 209 (232)
T 2gau_A 174 GATLSIYLSREELATLSNMT---VSNAIRTLSTFVSERM 209 (232)
T ss_dssp SSBBSCCCCHHHHHHHTTSC---HHHHHHHHHHHHHTTS
T ss_pred CcEEEcccCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 34577889999999999433 4567778888888764
No 40
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=21.07 E-value=33 Score=24.16 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=26.5
Q ss_pred CceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 58 SSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 58 ~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+...+.|.+|+++|..+|.-. ..+|--+|..|.+.|+
T Consensus 171 ~~~~~~l~~t~~~iA~~lg~s---r~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 171 GACEVTLPYDKMLIAGRLGMK---PESLSRAFSRLKAAGV 207 (237)
T ss_dssp ---EEECCSCTHHHHHHTTCC---HHHHHHHHHHHGGGTE
T ss_pred CCeEEEecCCHHHHHHHhCCC---HHHHHHHHHHHHHCCe
Confidence 455688889999999999433 3467778888888775
No 41
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=20.86 E-value=41 Score=23.55 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=27.0
Q ss_pred eEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 60 TEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 60 vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
..+.+.+|+++|..+|.-. ..++--+|..|.+.+.
T Consensus 170 ~~~~~~~t~~~iA~~lg~s---r~tvsR~l~~L~~~g~ 204 (231)
T 3e97_A 170 QPEVLPLGTQDIMARTSSS---RETVSRVLKRLEAHNI 204 (231)
T ss_dssp STTEECCCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred ceEecCCCHHHHHHHhCCc---HHHHHHHHHHHHHCCc
Confidence 4578889999999999433 3567778888888774
No 42
>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: b.111.1.1 PDB: 3iz4_B 2czj_A*
Probab=20.86 E-value=33 Score=24.48 Aligned_cols=27 Identities=37% Similarity=0.617 Sum_probs=21.8
Q ss_pred CceEEEEEEeHHHHHHHHhccCCCCCc
Q 033262 58 SSTEIKIKITKKQLEELLGKADVKGLS 84 (123)
Q Consensus 58 ~~vrVKIvITKqEL~~LL~k~~~~g~s 84 (123)
..+.=|+.+.|+|+.+|..+...+|.+
T Consensus 72 p~R~RKLLLhk~EI~kL~~~v~~~G~T 98 (122)
T 1wjx_A 72 PRRKRKLLLHKHELRRLLGKVEQKGLT 98 (122)
T ss_dssp TTCCEEEECCHHHHHHHTTTSSCTTEE
T ss_pred CCchhhhCcCHHHHHHHHHHHhcCCeE
Confidence 445679999999999999988766644
No 43
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=20.79 E-value=57 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=14.3
Q ss_pred EEEEEeHHHHHHHHh
Q 033262 62 IKIKITKKQLEELLG 76 (123)
Q Consensus 62 VKIvITKqEL~~LL~ 76 (123)
|.|.+||.||.++|+
T Consensus 176 vtl~LsK~QL~Kil~ 190 (319)
T 1dml_A 176 VQLRLTRPQLTKVLN 190 (319)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHH
Confidence 889999999999988
No 44
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.34 E-value=46 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=25.4
Q ss_pred EEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhccc
Q 033262 62 IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV 97 (123)
Q Consensus 62 VKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~ 97 (123)
+.+.+|+++|..+|.-. ..++--+|..|.+.|+
T Consensus 166 ~~~~~t~~~lA~~lg~s---r~tvsR~l~~L~~~g~ 198 (220)
T 3dv8_A 166 NELKITHETIANHLGSH---REVITRMLRYFQVEGL 198 (220)
T ss_dssp SEECCCHHHHHHHHTCC---HHHHHHHHHHHHHTTS
T ss_pred ceecCCHHHHHHHhCCC---HHHHHHHHHHHHHCCC
Confidence 56789999999999433 3567778888888764
Done!