Query 033265
Match_columns 123
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:49:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 7.8E-29 1.7E-33 184.0 8.8 72 45-122 44-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 1.9E-20 4.1E-25 123.0 2.5 64 48-112 1-70 (70)
3 PF07172 GRP: Glycine rich pro 95.5 0.012 2.6E-07 42.2 2.7 24 1-24 1-25 (95)
4 PLN00214 putative protein; Pro 85.6 2.2 4.9E-05 32.2 5.1 38 48-88 38-76 (115)
5 PF15240 Pro-rich: Proline-ric 48.7 12 0.00026 30.0 1.8 17 8-24 2-18 (179)
6 PF15284 PAGK: Phage-encoded v 46.5 16 0.00035 24.9 1.9 22 3-24 4-25 (61)
7 PF11471 Sugarporin_N: Maltopo 33.0 64 0.0014 21.3 3.1 10 28-37 26-35 (60)
8 COG3354 FlaG Putative archaeal 23.4 57 0.0012 25.8 1.8 24 1-24 1-24 (154)
9 cd04660 nsLTP_like nsLTP_like: 19.6 63 0.0014 21.2 1.2 16 73-88 23-39 (73)
10 cd03727 SOCS_ASB8 SOCS (suppre 19.4 77 0.0017 20.0 1.5 32 74-110 6-39 (43)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=7.8e-29 Score=183.99 Aligned_cols=72 Identities=28% Similarity=0.663 Sum_probs=66.3
Q ss_pred chhhhhhhhhcCcchHHHHHHHHHhccc-cccc-chHHHHHhhhcCCCCCCCCCCCCCCCccchHHhhhhhcCCCCCCCC
Q 033265 45 QFNECLKAYQELNKCSAVIYQFFFTGMA-NVAP-CCGAIETVTRKCAWPSTLPWFGYTPQQSNIFLSYCRAISPAPSPAQ 122 (123)
Q Consensus 45 ~~~~CWssL~~l~gC~~EI~~fflnG~~-~IGp-CC~AI~~I~~~C~WP~M~~~~gFtp~e~~~LkgyC~~~~pAp~pa~ 122 (123)
|+.||||||++++||+.||++++++||+ +||+ |||||++.+ || ||+| +.++|+| ++||++|+++..+++|.+
T Consensus 44 d~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nC-wP~~-P~~P~fP---p~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 44 DITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NC-IPKI-PFIPFFP---PMLKEQCSRVAGATPPIP 117 (118)
T ss_pred cHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-cc-ccCC-cCCCccc---hHHHHHHhcccCCCCCCC
Confidence 8999999999999999999999999999 9999 999999977 99 9996 8888876 699999999987777764
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.80 E-value=1.9e-20 Score=123.04 Aligned_cols=64 Identities=30% Similarity=0.754 Sum_probs=59.2
Q ss_pred hhhhhhhcCcchHHHHHHHHHhcc-ccccc-chHHHHHhhhcCCCCCCCCCCCCCCCccc----hHHhhhh
Q 033265 48 ECLKAYQELNKCSAVIYQFFFTGM-ANVAP-CCGAIETVTRKCAWPSTLPWFGYTPQQSN----IFLSYCR 112 (123)
Q Consensus 48 ~CWssL~~l~gC~~EI~~fflnG~-~~IGp-CC~AI~~I~~~C~WP~M~~~~gFtp~e~~----~LkgyC~ 112 (123)
|||+++.++++|+.||+.+|++|+ .+||+ ||++|+.++++| ||+|+..++++|.+++ .|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C-~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDC-HPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhH-HHHHHHHccCCCCccchhHHHHHhhcC
Confidence 699999999999999999999999 59999 999999999999 9997777777888888 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.54 E-value=0.012 Score=42.19 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=16.2
Q ss_pred CcchHHHHH-HHHHHHHHHHHhhcC
Q 033265 1 MALKNLFLI-ILFLITSLIANASAM 24 (123)
Q Consensus 1 ma~~~~fl~-~~~~~~~l~~~~~~~ 24 (123)
||+|+++|| ++|++++||++.++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 998885555 555666777765554
No 4
>PLN00214 putative protein; Provisional
Probab=85.63 E-value=2.2 Score=32.16 Aligned_cols=38 Identities=29% Similarity=0.728 Sum_probs=30.3
Q ss_pred hhhhhhhcCcchHHHHHHHHH-hcccccccchHHHHHhhhcC
Q 033265 48 ECLKAYQELNKCSAVIYQFFF-TGMANVAPCCGAIETVTRKC 88 (123)
Q Consensus 48 ~CWssL~~l~gC~~EI~~ffl-nG~~~IGpCC~AI~~I~~~C 88 (123)
.|-.-+. +.|..||+..++ ||.. ..+||+-|...+.+|
T Consensus 38 ~C~~Kmt--~KCa~EI~a~i~~N~t~-s~~CC~~LVk~GK~C 76 (115)
T PLN00214 38 TCLVKIT--PKCALDIIAVVFENGTL-IDPCCNDLVKEGKVC 76 (115)
T ss_pred HHHhhcc--HhhHHHHHHHHHcCCCC-chHHHHHHHHHhhHH
Confidence 4555444 679999999999 5544 555999999999999
No 5
>PF15240 Pro-rich: Proline-rich
Probab=48.66 E-value=12 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhhcC
Q 033265 8 LIILFLITSLIANASAM 24 (123)
Q Consensus 8 l~~~~~~~~l~~~~~~~ 24 (123)
|+|||+++||+.+++-+
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 56777777776665544
No 6
>PF15284 PAGK: Phage-encoded virulence factor
Probab=46.48 E-value=16 Score=24.90 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHHHHHHhhcC
Q 033265 3 LKNLFLIILFLITSLIANASAM 24 (123)
Q Consensus 3 ~~~~fl~~~~~~~~l~~~~~~~ 24 (123)
+|++||.++|+|.+..-+++++
T Consensus 4 ~ksifL~l~~~LsA~~FSasam 25 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASAM 25 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 6788888755555544444444
No 7
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.99 E-value=64 Score=21.35 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=7.2
Q ss_pred CCcchhhhhh
Q 033265 28 ASYGLGARLQ 37 (123)
Q Consensus 28 ~~~~l~~Rl~ 37 (123)
+..++.+||.
T Consensus 26 ~~ltiEqRLa 35 (60)
T PF11471_consen 26 APLTIEQRLA 35 (60)
T ss_pred ccCCHHHHHH
Confidence 4457888886
No 8
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.40 E-value=57 Score=25.81 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=17.9
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcC
Q 033265 1 MALKNLFLIILFLITSLIANASAM 24 (123)
Q Consensus 1 ma~~~~fl~~~~~~~~l~~~~~~~ 24 (123)
||+.-+.=+++|..++||++++|+
T Consensus 1 mAs~a~SeLV~FIaalLiaasvag 24 (154)
T COG3354 1 MASVASSELVMFIAALLIAASVAG 24 (154)
T ss_pred CCccchhHHHHHHHHHHHHHHHHH
Confidence 675555556777888888888877
No 9
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=19.58 E-value=63 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=13.0
Q ss_pred cccc-chHHHHHhhhcC
Q 033265 73 NVAP-CCGAIETVTRKC 88 (123)
Q Consensus 73 ~IGp-CC~AI~~I~~~C 88 (123)
.-.. ||.+|+.++..|
T Consensus 23 ~Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 23 PPSRECCAALRRADLPC 39 (73)
T ss_pred CCCHHHHHHHHcCCcCC
Confidence 3455 999999988778
No 10
>cd03727 SOCS_ASB8 SOCS (suppressors of cytokine signaling) box of ASB8-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB8 is highly transcribed in skeletal muscle and in lung carcinoma cell lines. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=19.44 E-value=77 Score=19.99 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=22.6
Q ss_pred ccc-chHHHHHhh-hcCCCCCCCCCCCCCCCccchHHhh
Q 033265 74 VAP-CCGAIETVT-RKCAWPSTLPWFGYTPQQSNIFLSY 110 (123)
Q Consensus 74 IGp-CC~AI~~I~-~~C~WP~M~~~~gFtp~e~~~Lkgy 110 (123)
+-. |..||+..- .+| -+.-.+.++. |..||+|
T Consensus 6 Lq~LcR~aiR~~lg~~~-l~~aI~~LpL----P~sLK~Y 39 (43)
T cd03727 6 LKALARYAVRRSLGVQY-LPEAVKQLPL----PRSVKEY 39 (43)
T ss_pred HHHHHHHHHHHHHhhhh-HHhhcccCCC----CHHHHHH
Confidence 345 899998765 454 4565677776 6789988
Done!