Query 033265
Match_columns 123
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ank_A Transthyretin; hormone 28.0 12 0.00042 27.7 -0.1 17 1-17 1-17 (147)
2 3b1j_C CP12; alpha/beta fold, 9.8 1.3E+02 0.0045 16.2 1.3 14 102-115 2-15 (26)
3 2jz3_A Suppressor of cytokine 7.2 3E+02 0.01 15.7 2.2 30 74-112 4-34 (40)
4 2knp_A Mcocc-1; disulfide-rich 6.8 59 0.002 18.7 -1.0 11 87-98 18-28 (33)
5 3l32_A Phosphoprotein; antipar 6.7 2E+02 0.0067 17.7 1.3 20 31-54 15-34 (45)
6 2ljo_A Non-specific lipid-tran 6.3 2.9E+02 0.0098 18.3 2.1 19 67-85 17-36 (93)
7 2q22_A Uncharacterized protein 5.6 3.4E+02 0.012 19.8 2.3 42 62-106 42-91 (139)
8 2ebo_A Ebola virus envelope gl 5.0 47 0.0016 22.2 -2.5 9 73-81 47-56 (74)
9 2rr9_C Putative uncharacterize 5.0 3.5E+02 0.012 16.6 1.7 12 79-91 34-45 (46)
10 2yrt_A Chord containing protei 4.9 1.6E+02 0.0056 19.5 0.1 11 50-60 57-67 (75)
No 1
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=28.04 E-value=12 Score=27.67 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHH
Q 033265 1 MALKNLFLIILFLITSL 17 (123)
Q Consensus 1 ma~~~~fl~~~~~~~~l 17 (123)
||++++||+.+..++++
T Consensus 1 m~~~~~~l~~la~l~~~ 17 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFV 17 (147)
T ss_dssp -----------------
T ss_pred CchHHHHHHHHHHHHhh
Confidence 89888888875555543
No 2
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=9.79 E-value=1.3e+02 Score=16.17 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=9.7
Q ss_pred CccchHHhhhhhcC
Q 033265 102 QQSNIFLSYCRAIS 115 (123)
Q Consensus 102 ~e~~~LkgyC~~~~ 115 (123)
++++.|..||+...
T Consensus 2 ~~~t~lE~yC~enP 15 (26)
T 3b1j_C 2 ETEPFFGDYCSENP 15 (26)
T ss_dssp --CTTHHHHHHHCT
T ss_pred CcccHHHHHHHHCC
Confidence 45778999998753
No 3
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=7.18 E-value=3e+02 Score=15.71 Aligned_cols=30 Identities=3% Similarity=-0.030 Sum_probs=20.6
Q ss_pred ccc-chHHHHHhhhcCCCCCCCCCCCCCCCccchHHhhhh
Q 033265 74 VAP-CCGAIETVTRKCAWPSTLPWFGYTPQQSNIFLSYCR 112 (123)
Q Consensus 74 IGp-CC~AI~~I~~~C~WP~M~~~~gFtp~e~~~LkgyC~ 112 (123)
+-. |-.+|+... +|.+ ..++. |+.||+|..
T Consensus 4 LQHLCR~~I~~~~-~~~~----~~LpL----P~~Lk~yL~ 34 (40)
T 2jz3_A 4 LQHLCRKTVNGHL-DSYE----KVTQL----PGPIREFLD 34 (40)
T ss_pred HHHHHHHHHHHHc-CCCc----ccCCC----CHHHHHHHH
Confidence 346 889999987 7723 33344 678999874
No 4
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=6.83 E-value=59 Score=18.67 Aligned_cols=11 Identities=45% Similarity=1.407 Sum_probs=7.4
Q ss_pred cCCCCCCCCCCC
Q 033265 87 KCAWPSTLPWFG 98 (123)
Q Consensus 87 ~C~WP~M~~~~g 98 (123)
+| ||..-|-+|
T Consensus 18 rc-wptvtpgvg 28 (33)
T 2knp_A 18 RC-WPTVTPGVG 28 (33)
T ss_dssp CE-EECSSTTEE
T ss_pred ee-ccccCCCee
Confidence 68 887766443
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=6.72 E-value=2e+02 Score=17.70 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=15.8
Q ss_pred chhhhhhcCCCCCCchhhhhhhhh
Q 033265 31 GLGARLQASGWPGGQFNECLKAYQ 54 (123)
Q Consensus 31 ~l~~Rl~~~~~~gg~~~~CWssL~ 54 (123)
-+..|++. |+++-|=||.+.
T Consensus 15 qiVrkmKt----Ge~FfKiWS~~~ 34 (45)
T 3l32_A 15 QIVRQMRS----GERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHTT----TCCHHHHHHHHH
T ss_pred HHHHHHHc----cccHHHHHHHHH
Confidence 46778885 488999999874
No 6
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=6.34 E-value=2.9e+02 Score=18.26 Aligned_cols=19 Identities=32% Similarity=0.969 Sum_probs=13.8
Q ss_pred HHhccccccc-chHHHHHhh
Q 033265 67 FFTGMANVAP-CCGAIETVT 85 (123)
Q Consensus 67 flnG~~~IGp-CC~AI~~I~ 85 (123)
|++|.....+ ||..++.+.
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCchhhHHHHHH
Confidence 4566556666 999998874
No 7
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=5.64 E-value=3.4e+02 Score=19.80 Aligned_cols=42 Identities=7% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHHHHHhccc-ccccch-------HHHHHhhhcCCCCCCCCCCCCCCCccch
Q 033265 62 VIYQFFFTGMA-NVAPCC-------GAIETVTRKCAWPSTLPWFGYTPQQSNI 106 (123)
Q Consensus 62 EI~~fflnG~~-~IGpCC-------~AI~~I~~~C~WP~M~~~~gFtp~e~~~ 106 (123)
|+.....+-.. .||-|= .|.+.+.+..+||.|... +++++++
T Consensus 42 aL~~~~~~sd~~~lGIcA~s~~~a~~ALr~~~~alg~~~~~~~---~~~~GpV 91 (139)
T 2q22_A 42 ALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDL---PVVEGPV 91 (139)
T ss_dssp HHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTTCCCC-CC---CCCSSSE
T ss_pred HHHHHHhhCCcEEEEeecCCHHHHHHHHHHHHHHhCCCccccC---CCCCCCE
Confidence 44444333333 677642 577888999999988754 5555554
No 8
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=5.05 E-value=47 Score=22.23 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=6.4
Q ss_pred cccc-chHHH
Q 033265 73 NVAP-CCGAI 81 (123)
Q Consensus 73 ~IGp-CC~AI 81 (123)
-+|| ||-.+
T Consensus 47 ilgpdc~i~~ 56 (74)
T 2ebo_A 47 ILGPDCAIEP 56 (74)
T ss_dssp HHGGGGGCCC
T ss_pred ecCCccccCH
Confidence 5799 99543
No 9
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=5.03 E-value=3.5e+02 Score=16.56 Aligned_cols=12 Identities=33% Similarity=0.579 Sum_probs=8.9
Q ss_pred HHHHHhhhcCCCC
Q 033265 79 GAIETVTRKCAWP 91 (123)
Q Consensus 79 ~AI~~I~~~C~WP 91 (123)
|||-.--+.| ||
T Consensus 34 KAIaESLn~~-~~ 45 (46)
T 2rr9_C 34 KAIAESLNSC-RP 45 (46)
T ss_dssp HHHHHHHHCC-SC
T ss_pred HHHHHHHHhc-cC
Confidence 6777777777 76
No 10
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=4.91 E-value=1.6e+02 Score=19.49 Aligned_cols=11 Identities=9% Similarity=0.546 Sum_probs=9.2
Q ss_pred hhhhhcCcchH
Q 033265 50 LKAYQELNKCS 60 (123)
Q Consensus 50 WssL~~l~gC~ 60 (123)
|+..++++||+
T Consensus 57 F~~Fl~i~GCt 67 (75)
T 2yrt_A 57 FSDFLSIVGCT 67 (75)
T ss_dssp HHHHTTCCCSS
T ss_pred HHHhccCCCcc
Confidence 77888999985
Done!