BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033266
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16560|U1SBP_HUMAN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo
sapiens GN=SNRNP35 PE=1 SV=1
Length = 246
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD PHD A+ RA+L Y P + IGDP T+FV RL+
Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVIGDPLLTLFVARLNLQ 61
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T ED L++ S+YG ++ LRLVRD+VTG S+GYAF+EY+ ER + +AY
Sbjct: 62 TKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 109
>sp|Q1LZH0|U1SBP_BOVIN U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos
taurus GN=SNRNP35 PE=2 SV=1
Length = 245
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+
Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YTP--NKGVTGDPLLTLFVARLNLQ 61
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T E+ L++ S+YG ++ LRLVRD+VTG S+GYAF+EY+ ER + +AY
Sbjct: 62 TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAY 109
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD+ PHD + RA+L Y P + GDP T+FV RL+
Sbjct: 7 AKVYDPLKAGSIDGTDVEPHDAGVWRAMLAR----YKP--NRGVCGDPDLTLFVARLNPQ 60
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T+E+ LR SK+G ++ LRLVRD+VTG S+ YAF+EY+ ER ++RA+
Sbjct: 61 TTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAW 108
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD PHD A+ RA+L Y P + GDPH T+FV RLS
Sbjct: 8 AKKYDPLKAGSIDGTDEEPHDRAVLRAMLSR----YVP--NKGVTGDPHLTLFVSRLSPQ 61
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T+E+ L++ S+YG +K +RLVRD +TG S+GYAF+EY+ E + +A+
Sbjct: 62 TTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAH 109
>sp|Q5U1W5|U1SBP_RAT U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus
norvegicus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+
Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNSQ 61
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T E+ L++ S+YG ++ LRLVRD+VTG S+GYAF+EY+ ER + +AY
Sbjct: 62 TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAY 109
>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
musculus GN=Snrnp35 PE=2 SV=1
Length = 244
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 12 AGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHF 71
A Y P++AGSIDGTD PHD A+ RA+L Y P + GDP T+FV RL+
Sbjct: 8 AKEYDPLKAGSIDGTDEDPHDRAVWRAMLAR----YVP--NKGVTGDPLLTLFVARLNLQ 61
Query: 72 TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
T E+ L++ S+YG ++ LRLVRD+VTG S+GYAF+EY+ ER + +AY
Sbjct: 62 TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAY 109
>sp|O13829|RU17_SCHPO U1 small nuclear ribonucleoprotein 70 kDa homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=usp101 PE=1 SV=1
Length = 261
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 14 SYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTS 73
YHP ++ + R L S ++DP D IGDP+ T+F+ RLS+ T
Sbjct: 53 QYHPTESLEEKRLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTK 112
Query: 74 EDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123
E + + ++YG ++ +R+VR+ VTG S GYAFV +E ER+++ AY+
Sbjct: 113 ESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASA 162
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 47 YDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAF 106
YDP DP A GDP+ T+FV RL++ +SE +++ YG +K + LV D +T +GYAF
Sbjct: 124 YDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183
Query: 107 VEYETEREMRRAYE 120
+EY R+M+ AY+
Sbjct: 184 IEYMHTRDMKAAYK 197
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYA
Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYA 147
Query: 106 FVEYETEREMRRAYE 120
F+EYE ER+M AY+
Sbjct: 148 FIEYEHERDMHSAYK 162
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYA
Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYA 147
Query: 106 FVEYETEREMRRAYE 120
F+EYE ER+M AY+
Sbjct: 148 FIEYEHERDMHSAYK 162
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
++DP DP A GD T+FV R+++ T+E LR+ YG +K + +V +G RGYA
Sbjct: 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYA 147
Query: 106 FVEYETEREMRRAYE 120
F+EYE ER+M AY+
Sbjct: 148 FIEYEHERDMHSAYK 162
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
++DP D A GD T+FV R+++ T+E LR+ YG +K + +V + +G RGYA
Sbjct: 88 IWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYA 147
Query: 106 FVEYETEREMRRAYE 120
F+EYE ER+M AY+
Sbjct: 148 FIEYEHERDMHSAYK 162
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 45 GLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGY 104
L+DP A DP T+F+ R+++ TSE LR+ YG +K + L+ D +G +GY
Sbjct: 86 ALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGY 145
Query: 105 AFVEYETEREMRRAYE 120
AF+EYE ER+M AY+
Sbjct: 146 AFIEYEHERDMHAAYK 161
>sp|P09406|RU17_XENLA U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDI---VTGASR 102
++DP D A GD T+FV R+++ T+E LR+ YG +K + +V + +G R
Sbjct: 88 IWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPR 147
Query: 103 GYAFVEYETEREMRRAYE 120
GYAF+EYE ER+M AY+
Sbjct: 148 GYAFIEYEHERDMHSAYK 165
>sp|Q55FQ0|RU17_DICDI U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium
discoideum GN=snrnp70 PE=3 SV=1
Length = 459
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 47 YDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASR-GYA 105
+DP + + GDP+ T+FV R+S+ T++ L ++G +K+L LV+D GYA
Sbjct: 85 WDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYA 144
Query: 106 FVEYETEREMRRAYE 120
F+E+E ER+M+ AY+
Sbjct: 145 FIEFERERDMKAAYK 159
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SNP1 PE=1
SV=1
Length = 300
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 39 LLCSSAGLYDPLGDPKAIG-DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIV 97
LL ++P DP DP+ T+F+GRL + E L+K K+G ++ +R+V+D +
Sbjct: 84 LLDRRLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKI 143
Query: 98 TGASRGYAFVEYETEREMRRAYEVCG 123
T S+GYAF+ ++ + A++ G
Sbjct: 144 TQKSKGYAFIVFKDPISSKMAFKEIG 169
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYE 110
C +F+G L+ T+ED LR+ KYG V +L++++D TG SRG+ F+ +E
Sbjct: 159 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 53 PKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETE 112
P+ D +FVG + + S++G + + +L+ D TG SRG+ FV Y++
Sbjct: 235 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 294
Query: 113 REMRR 117
+ R
Sbjct: 295 DAVDR 299
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122
+FVG +S+ T E LR+A SKYG V + +++ D TG SRG+AFV + + E A ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLD 95
Query: 123 G 123
G
Sbjct: 96 G 96
>sp|Q24207|BOULE_DROME Protein boule OS=Drosophila melanogaster GN=bol PE=2 SV=1
Length = 228
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 45 GLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGY 104
GL PL PK +FVG +S T+E L + S YG VK+ +++ D G S+GY
Sbjct: 17 GLETPLAAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGY 75
Query: 105 AFVEYETEREMRR 117
FV +ETE+E +R
Sbjct: 76 GFVTFETEQEAQR 88
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
L P G P A P T+FV LS T+E+TL+++ G V+ R+V D TG+S+G+
Sbjct: 560 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFG 616
Query: 106 FVEYETEREMRRAYE 120
FV++ +E + + A E
Sbjct: 617 FVDFNSEEDAKAAKE 631
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122
+F+G L+ S L+ A+S+ +L V D+ TG +R + +V++E+ ++ +A E+
Sbjct: 313 LFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGTNRKFGYVDFESAEDLEKALELT 371
Query: 123 G 123
G
Sbjct: 372 G 372
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121
T+ + LS+ +E+TL++ K +K V G S+GYAF+E+ + + + A
Sbjct: 490 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNS 545
Query: 122 C 122
C
Sbjct: 546 C 546
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
L P G P A P T+FV LS T+E+TL+++ G V+ R+V D TG+S+G+
Sbjct: 557 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFG 613
Query: 106 FVEYETEREMRRAYE 120
FV++ +E + + A E
Sbjct: 614 FVDFNSEEDAKAAKE 628
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122
+F+G L+ S L+ A+S+ KN V D+ TG +R + +V++E+ ++ +A E+
Sbjct: 310 LFIGNLNPNKSVAELKVAISE-PFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 368
Query: 123 G 123
G
Sbjct: 369 G 369
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121
T+ + LS+ +E+TL++ K +K V G S+GYAF+E+ + + + A
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNS 542
Query: 122 C 122
C
Sbjct: 543 C 543
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
L P G P A P T+FV LS T+E+TL+++ G V+ R+V D TG+S+G+
Sbjct: 559 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFG 615
Query: 106 FVEYETEREMRRAYE 120
FV++ +E + + A E
Sbjct: 616 FVDFNSEEDAKAAKE 630
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121
T+ + LS+ +E+TL++ K +K V G S+GYAF+E+ + + + A
Sbjct: 489 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNS 544
Query: 122 C 122
C
Sbjct: 545 C 545
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
L P G P A P T+FV LS T+E+TL+++ G V+ R+V D TG+S+G+
Sbjct: 558 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFG 614
Query: 106 FVEYETEREMRRAYE 120
FV++ +E + + A E
Sbjct: 615 FVDFNSEEDAKAAKE 629
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121
T+ + LS+ +E+TL++ K +K V G S+GYAF+E+ + + + A
Sbjct: 488 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNS 543
Query: 122 C 122
C
Sbjct: 544 C 544
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 46 LYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYA 105
L P G P A P T+FV LS T+E+TL+++ G V+ R+V D TG+S+G+
Sbjct: 557 LQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVR-ARIVTDRETGSSKGFG 613
Query: 106 FVEYETEREMRRAYE 120
FV++ +E + + A E
Sbjct: 614 FVDFNSEEDAKAAKE 628
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121
T+ + LS+ +E+TL++ K +K V G S+GYAF+E+ + + + A
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNS 542
Query: 122 C 122
C
Sbjct: 543 C 543
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 43 SAGLYDPLGDPKAIGDPH-------CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRD 95
+ G DPL +++ C V+VG + + EDT+R+A + +G +K++ + D
Sbjct: 61 TMGFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD 120
Query: 96 IVTGASRGYAFVEYETEREMRRAYE 120
VT +G+AFVEYE + A E
Sbjct: 121 SVTMKHKGFAFVEYEVPEAAQLALE 145
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYE 110
++V + S+D ++ +G++K+ L R+ TG +G+ F+EYE
Sbjct: 185 IYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYE 232
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG + + EDT+R+A + +G +K++ + D VT +G+AFVEYE + A E
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + S+D ++ +G++K+ L RD TG +GY F+EYE + + A
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 288
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG + + EDT+R+A + +G +K++ + D VT +G+AFVEYE + A E
Sbjct: 128 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 187
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + S+D ++ +G++K+ L RD TG +GY F+EYE + + A
Sbjct: 227 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 282
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG + + EDT+R+A + +G +K++ + D VT +G+AFVEYE + A E
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + S+D ++ +G++K+ L RD TG +GY F+EYE + + A
Sbjct: 233 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 288
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG + + EDT+R+A + +G +K++ + D VT +G+AFVEYE + A E
Sbjct: 129 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 188
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + S+D ++ +G++K+ L RD TG +GY F+EYE + + A
Sbjct: 228 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 283
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG + + EDT+R+A + +G +K++ + D VT +G+AFVEYE + A E
Sbjct: 100 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 159
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + S+D ++ +G++K+ L RD TG +GY F+EYE + + A
Sbjct: 199 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 254
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%)
Query: 64 FVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
FVG L+ T++++L +A S++G + + +++ D TG SRG+ FV ++ E+ MR A E
Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65
>sp|Q8WP23|BOLL_MACFA Protein boule-like OS=Macaca fascicularis GN=BOLL PE=2 SV=2
Length = 283
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
+FVG + T+E LRK S+YG VK +++V D G S+GY FV +ET+ + ++
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQK 88
>sp|Q924M5|BOLL_MOUSE Protein boule-like OS=Mus musculus GN=Boll PE=2 SV=2
Length = 281
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
+FVG + T+E+ LRK S+YG VK +++V D G S+GY F+ +ET+ + ++
Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFITFETQEDAQK 88
>sp|Q8N9W6|BOLL_HUMAN Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2
Length = 283
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRR 117
+FVG + T+E LRK S+YG VK +++V D G S+GY FV +ET+ + ++
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQK 88
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
C V+VG +S EDT+R A + +G +K++ + D +T +G+AFVEYE + A E
Sbjct: 130 CRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALE 189
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118
++V + SE+ ++ +G + +L + +GY F+EY ++ M A
Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEA 284
>sp|Q9CXG3|PPIL4_MOUSE Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4
PE=2 SV=2
Length = 492
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 42 SSAGLYDPLGD-PKA-IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTG 99
+ A L + +GD P A I P +FV +L+ T+++ L S++G +++ ++RD TG
Sbjct: 219 TQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTG 278
Query: 100 ASRGYAFVEYETEREMRRAY 119
S YAF+E+E E + +A+
Sbjct: 279 ESLCYAFIEFEKEEDCEKAF 298
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREM 115
+ D FVG L T + +L+ A SKYG V + +++ D TG SRG+ FV + ++ M
Sbjct: 1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAM 60
Query: 116 RRAYE 120
R+A E
Sbjct: 61 RQAIE 65
>sp|Q8WUA2|PPIL4_HUMAN Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4
PE=1 SV=1
Length = 492
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 42 SSAGLYDPLGD-PKA-IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTG 99
+ A L + +GD P A I P +FV +L+ T+++ L S++G +++ ++RD TG
Sbjct: 219 TQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTG 278
Query: 100 ASRGYAFVEYETEREMRRAY 119
S YAF+E+E E + +A+
Sbjct: 279 ESLCYAFIEFEKEEDCEKAF 298
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
H VFVG LS + + ++ A + +GR+ + R+V+D+ TG S+GY FV + + + A
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 120 EVCG 123
+ G
Sbjct: 165 QQMG 168
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119
H VFVG LS + + ++ A + +GR+ + R+V+D+ TG S+GY FV + + + A
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 120 EVCG 123
+ G
Sbjct: 165 QQMG 168
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETERE 114
A GD FVG L+ T + L A ++YG V + +++ D TG SRG+ FV ++ E+
Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKA 61
Query: 115 MRRAYE 120
M+ A E
Sbjct: 62 MKDAIE 67
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETERE 114
A D FVG L+ T+ +TL +A + +G+V + +++ D TG SRG+ FV + +E+
Sbjct: 2 AAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQS 61
Query: 115 MRRAYE 120
M A E
Sbjct: 62 MLDAIE 67
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEY 109
PH +F+G L ++ ++D +++ + +G+++ LV+D TG S+GYAF EY
Sbjct: 206 PH-KIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
>sp|Q06A98|SRSF2_PIG Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2
SV=1
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
>sp|Q6PDU1|SRSF2_RAT Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus
GN=Srsf2 PE=1 SV=3
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
>sp|Q62093|SRSF2_MOUSE Serine/arginine-rich splicing factor 2 OS=Mus musculus GN=Srsf2
PE=1 SV=4
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
>sp|Q01130|SRSF2_HUMAN Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2
PE=1 SV=4
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
>sp|Q3MHR5|SRSF2_BOVIN Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2
SV=3
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 64 FVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
FVG L+ T + L A S+YG V + +++ D TG SRG+ FV ++ E+ M+ A E
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes GN=SRSF2
PE=2 SV=3
Length = 221
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120
++ V L++ TS DTLR+ KYGRV ++ + RD T SRG+AFV + +R+ A +
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 121 VC 122
Sbjct: 74 AM 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,040,733
Number of Sequences: 539616
Number of extensions: 1851139
Number of successful extensions: 5018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 3865
Number of HSP's gapped (non-prelim): 1194
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)