Query 033266
Match_columns 123
No_of_seqs 159 out of 1998
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 19:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-20 8E-25 113.0 9.3 66 58-123 17-82 (99)
2 3s8s_A Histone-lysine N-methyl 99.8 1.4E-19 4.9E-24 111.5 9.6 66 58-123 4-69 (110)
3 3s7r_A Heterogeneous nuclear r 99.8 6.3E-19 2.1E-23 103.9 9.0 67 56-122 7-73 (87)
4 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.6E-24 108.5 5.4 63 60-122 1-64 (91)
5 2lkz_A RNA-binding protein 5; 99.8 1.7E-19 5.9E-24 108.5 5.9 66 58-123 7-74 (95)
6 2dgp_A Bruno-like 4, RNA bindi 99.8 9.8E-19 3.4E-23 106.5 9.2 68 56-123 9-76 (106)
7 2la6_A RNA-binding protein FUS 99.8 2.3E-18 7.8E-23 103.8 10.4 68 56-123 9-84 (99)
8 1x5u_A Splicing factor 3B subu 99.8 1.7E-18 6E-23 105.3 9.9 68 56-123 11-78 (105)
9 2cqc_A Arginine/serine-rich sp 99.8 2.3E-18 7.9E-23 102.8 9.9 68 56-123 11-78 (95)
10 2cq0_A Eukaryotic translation 99.8 1.8E-18 6E-23 105.0 9.5 69 55-123 10-78 (103)
11 1x4h_A RNA-binding protein 28; 99.8 2.3E-18 7.7E-23 105.7 10.0 68 56-123 11-78 (111)
12 2div_A TRNA selenocysteine ass 99.8 1.9E-18 6.4E-23 104.1 9.4 67 57-123 6-73 (99)
13 1x4e_A RNA binding motif, sing 99.8 8.6E-19 2.9E-23 102.8 7.7 66 58-123 3-68 (85)
14 2dgs_A DAZ-associated protein 99.8 2.9E-18 1E-22 103.3 10.1 67 56-123 6-72 (99)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-18 7E-23 101.5 9.2 66 58-123 4-69 (87)
16 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 107.5 6.3 66 58-123 4-75 (100)
17 2dnm_A SRP46 splicing factor; 99.8 1.3E-18 4.3E-23 105.6 8.4 68 56-123 9-76 (103)
18 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.8E-18 6.1E-23 101.4 8.7 67 57-123 4-70 (85)
19 3p5t_L Cleavage and polyadenyl 99.8 5.4E-19 1.8E-23 105.0 6.4 63 61-123 2-66 (90)
20 2dgo_A Cytotoxic granule-assoc 99.8 4.5E-18 1.5E-22 105.1 10.8 68 56-123 11-78 (115)
21 1p27_B RNA-binding protein 8A; 99.8 2.9E-18 9.8E-23 104.5 9.8 67 57-123 20-86 (106)
22 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-18 4E-23 107.1 8.0 69 55-123 20-88 (109)
23 2e5h_A Zinc finger CCHC-type a 99.8 4.3E-18 1.5E-22 101.5 10.3 68 56-123 12-79 (94)
24 2dnh_A Bruno-like 5, RNA bindi 99.8 4.7E-18 1.6E-22 103.3 10.5 67 56-123 11-77 (105)
25 3md1_A Nuclear and cytoplasmic 99.8 2.9E-18 1E-22 100.0 9.2 63 61-123 2-64 (83)
26 2cpz_A CUG triplet repeat RNA- 99.8 3.7E-18 1.3E-22 105.5 10.1 68 56-123 21-88 (115)
27 2dnz_A Probable RNA-binding pr 99.8 3.8E-18 1.3E-22 102.0 9.7 66 58-123 3-68 (95)
28 1whw_A Hypothetical protein ri 99.8 3.3E-18 1.1E-22 103.0 9.4 67 57-123 5-71 (99)
29 2jrs_A RNA-binding protein 39; 99.8 3.9E-18 1.3E-22 104.6 9.8 68 56-123 22-89 (108)
30 2khc_A Testis-specific RNP-typ 99.8 4.6E-18 1.6E-22 105.5 10.0 68 56-123 36-103 (118)
31 2cqd_A RNA-binding region cont 99.8 4.6E-18 1.6E-22 105.2 9.9 68 56-123 13-80 (116)
32 1x5s_A Cold-inducible RNA-bind 99.8 4E-18 1.4E-22 103.2 9.3 68 56-123 8-75 (102)
33 2x1f_A MRNA 3'-END-processing 99.8 3.1E-18 1.1E-22 102.7 8.8 65 59-123 1-65 (96)
34 1s79_A Lupus LA protein; RRM, 99.8 2.7E-18 9.3E-23 104.6 8.5 63 57-120 8-70 (103)
35 2kxn_B Transformer-2 protein h 99.8 4.1E-18 1.4E-22 107.6 9.4 69 55-123 41-109 (129)
36 2cph_A RNA binding motif prote 99.8 5.8E-18 2E-22 103.2 9.7 67 56-122 11-78 (107)
37 2do4_A Squamous cell carcinoma 99.8 8.6E-18 2.9E-22 101.4 10.3 67 56-123 13-79 (100)
38 3n9u_C Cleavage and polyadenyl 99.8 3.7E-18 1.3E-22 111.1 9.1 66 58-123 53-120 (156)
39 2m2b_A RNA-binding protein 10; 99.8 2.2E-18 7.4E-23 109.0 7.7 67 56-123 19-87 (131)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.5E-18 8.6E-23 104.0 7.6 68 56-123 8-75 (102)
41 2dhg_A TRNA selenocysteine ass 99.8 7.1E-18 2.4E-22 102.4 9.6 66 57-123 6-72 (104)
42 1oo0_B CG8781-PA, drosophila Y 99.8 5.7E-18 1.9E-22 103.8 9.1 68 56-123 22-89 (110)
43 1u6f_A Tcubp1, RNA-binding pro 99.8 8.5E-18 2.9E-22 107.0 10.2 68 56-123 38-105 (139)
44 4f25_A Polyadenylate-binding p 99.8 4.1E-18 1.4E-22 105.5 8.5 62 60-123 5-66 (115)
45 1x5t_A Splicing factor 3B subu 99.7 3.9E-18 1.3E-22 102.1 7.6 65 59-123 4-69 (96)
46 2d9p_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 101.4 9.6 67 55-123 10-76 (103)
47 4f02_A Polyadenylate-binding p 99.7 7E-18 2.4E-22 114.4 9.4 67 57-123 12-78 (213)
48 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.6E-18 5.4E-23 99.8 5.3 63 61-123 1-63 (77)
49 2cqg_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.2E-22 100.4 10.2 66 56-121 11-76 (103)
50 2ywk_A Putative RNA-binding pr 99.7 9.5E-18 3.3E-22 100.2 8.7 67 56-123 12-78 (95)
51 2fy1_A RNA-binding motif prote 99.7 1E-17 3.5E-22 104.0 9.1 66 57-123 4-69 (116)
52 2cq4_A RNA binding motif prote 99.7 2.9E-18 9.8E-23 105.9 6.6 65 58-123 23-87 (114)
53 2cpf_A RNA binding motif prote 99.7 5.9E-18 2E-22 101.7 7.8 66 58-123 3-71 (98)
54 3ulh_A THO complex subunit 4; 99.7 1.5E-17 5.1E-22 101.4 9.7 67 56-123 25-91 (107)
55 2dh8_A DAZ-associated protein 99.7 1.4E-17 4.7E-22 101.3 9.3 66 56-121 12-77 (105)
56 1x5o_A RNA binding motif, sing 99.7 2.4E-17 8.1E-22 101.6 10.2 67 56-123 21-87 (114)
57 2cpe_A RNA-binding protein EWS 99.7 1E-17 3.5E-22 103.2 8.5 68 56-123 11-86 (113)
58 2dng_A Eukaryotic translation 99.7 2.1E-17 7.3E-22 100.2 9.8 65 57-123 12-76 (103)
59 3ex7_B RNA-binding protein 8A; 99.7 1.2E-17 4.1E-22 104.6 8.9 68 56-123 18-85 (126)
60 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.6E-22 101.2 8.9 65 57-123 12-77 (104)
61 2cqp_A RNA-binding protein 12; 99.7 7.6E-18 2.6E-22 101.2 7.6 67 57-123 12-78 (98)
62 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-17 7.5E-22 107.1 10.2 68 56-123 35-102 (156)
63 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.8E-17 6.2E-22 108.5 9.9 67 57-123 69-135 (165)
64 3ucg_A Polyadenylate-binding p 99.7 1.3E-17 4.5E-22 98.4 8.4 63 60-123 6-68 (89)
65 2do0_A HnRNP M, heterogeneous 99.7 2.6E-17 8.8E-22 101.4 10.0 67 56-123 11-77 (114)
66 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4E-17 1.4E-21 103.7 10.9 68 56-123 59-126 (140)
67 1sjq_A Polypyrimidine tract-bi 99.7 1.6E-17 5.6E-22 101.4 8.5 60 57-122 13-72 (105)
68 2krb_A Eukaryotic translation 99.7 1.1E-17 3.6E-22 97.5 7.1 61 61-123 2-68 (81)
69 2mss_A Protein (musashi1); RNA 99.7 6.6E-18 2.3E-22 96.8 6.2 59 62-120 1-59 (75)
70 2dgv_A HnRNP M, heterogeneous 99.7 3.9E-17 1.3E-21 97.0 9.6 65 57-123 5-69 (92)
71 2lea_A Serine/arginine-rich sp 99.7 6.1E-18 2.1E-22 107.6 6.4 68 56-123 43-110 (135)
72 2ek1_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 100.7 6.2 65 59-123 14-78 (95)
73 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.7E-22 101.0 7.5 65 59-123 7-71 (104)
74 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 4.1E-22 104.4 7.2 64 59-123 35-98 (124)
75 2kt5_A RNA and export factor-b 99.7 7.8E-17 2.7E-21 100.8 10.8 66 57-123 32-97 (124)
76 4a8x_A RNA-binding protein wit 99.7 1.8E-17 6.1E-22 97.6 7.4 65 59-123 3-68 (88)
77 2kn4_A Immunoglobulin G-bindin 99.7 3.7E-17 1.3E-21 106.0 9.6 67 57-123 67-133 (158)
78 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9.9E-18 3.4E-22 101.3 6.3 66 56-123 15-81 (100)
79 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.5E-17 2.2E-21 98.0 9.9 66 56-123 11-76 (103)
80 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 103.3 6.7 64 58-121 25-88 (116)
81 2cq3_A RNA-binding protein 9; 99.7 1.1E-16 3.8E-21 96.9 10.8 66 56-123 11-76 (103)
82 2nlw_A Eukaryotic translation 99.7 2.5E-17 8.4E-22 100.4 7.8 66 56-123 11-82 (105)
83 1wg5_A Heterogeneous nuclear r 99.7 4.5E-17 1.5E-21 99.1 9.0 64 57-121 12-76 (104)
84 2dis_A Unnamed protein product 99.7 2.4E-17 8.2E-22 100.8 7.8 65 58-122 6-72 (109)
85 3md3_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 108.5 6.3 68 56-123 83-150 (166)
86 2dgw_A Probable RNA-binding pr 99.7 8.9E-17 3E-21 95.3 9.7 64 57-123 7-70 (91)
87 2cpy_A RNA-binding protein 12; 99.7 2.5E-17 8.7E-22 101.8 7.3 65 56-121 11-76 (114)
88 1iqt_A AUF1, heterogeneous nuc 99.7 8.4E-18 2.9E-22 96.3 4.8 60 62-121 1-60 (75)
89 2dnl_A Cytoplasmic polyadenyla 99.7 2.5E-17 8.6E-22 101.8 7.0 64 58-122 6-72 (114)
90 1wez_A HnRNP H', FTP-3, hetero 99.7 3.3E-17 1.1E-21 99.5 7.4 62 57-120 12-73 (102)
91 1x4a_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 97.1 10.6 65 56-123 18-82 (109)
92 3q2s_C Cleavage and polyadenyl 99.7 2.4E-17 8.1E-22 113.3 7.5 65 59-123 67-133 (229)
93 2ad9_A Polypyrimidine tract-bi 99.7 5.4E-17 1.9E-21 101.1 8.4 61 56-122 27-87 (119)
94 2hgl_A HNRPF protein, heteroge 99.7 2.7E-17 9.2E-22 104.8 7.1 65 57-123 41-108 (136)
95 2ki2_A SS-DNA binding protein 99.7 9.4E-18 3.2E-22 99.3 4.7 62 61-123 2-63 (90)
96 2dnn_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 99.9 8.1 62 57-120 13-74 (109)
97 2err_A Ataxin-2-binding protei 99.7 4.9E-17 1.7E-21 99.8 7.9 68 54-123 23-90 (109)
98 2lmi_A GRSF-1, G-rich sequence 99.7 2.7E-17 9.1E-22 100.6 6.5 63 57-120 8-73 (107)
99 1wel_A RNA-binding protein 12; 99.7 2.3E-17 7.8E-22 103.3 6.3 66 57-123 22-87 (124)
100 2db1_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 101.4 7.3 63 57-120 14-79 (118)
101 2dgx_A KIAA0430 protein; RRM d 99.7 1E-16 3.4E-21 96.2 8.7 63 58-123 7-73 (96)
102 2cq1_A PTB-like protein L; RRM 99.7 1.1E-16 3.8E-21 97.1 8.7 61 56-122 11-71 (101)
103 2i2y_A Fusion protein consists 99.7 8.6E-18 2.9E-22 108.4 4.0 109 7-123 22-131 (150)
104 1x4d_A Matrin 3; structural ge 99.7 6.1E-17 2.1E-21 98.5 7.5 61 57-123 12-73 (102)
105 2hgm_A HNRPF protein, heteroge 99.7 6.3E-17 2.1E-21 101.9 7.3 64 57-122 39-104 (126)
106 2xs2_A Deleted in azoospermia- 99.7 1.6E-17 5.6E-22 100.5 4.5 62 58-120 7-68 (102)
107 3r27_A HnRNP L, heterogeneous 99.7 1.5E-16 5.1E-21 96.3 8.5 62 56-123 17-78 (100)
108 1l3k_A Heterogeneous nuclear r 99.7 1.6E-16 5.6E-21 105.5 9.1 66 56-121 9-74 (196)
109 1wex_A Hypothetical protein (r 99.7 2.5E-16 8.5E-21 96.0 9.1 60 57-122 12-71 (104)
110 2g4b_A Splicing factor U2AF 65 99.7 5.4E-17 1.8E-21 105.8 6.5 66 58-123 92-157 (172)
111 2dha_A FLJ20171 protein; RRM d 99.7 8.4E-17 2.9E-21 100.9 6.7 62 59-121 22-87 (123)
112 2cpi_A CCR4-NOT transcription 99.7 1.4E-16 4.7E-21 98.0 7.5 67 57-123 12-84 (111)
113 3nmr_A Cugbp ELAV-like family 99.7 2E-16 6.8E-21 103.2 8.6 65 59-123 2-68 (175)
114 3pgw_S U1-70K; protein-RNA com 99.7 2E-16 7E-21 117.6 9.7 75 49-123 91-165 (437)
115 2wbr_A GW182, gawky, LD47780P; 99.7 1.6E-16 5.5E-21 93.6 7.2 58 60-123 7-64 (89)
116 2yh0_A Splicing factor U2AF 65 99.7 4.9E-17 1.7E-21 108.2 5.5 66 58-123 112-177 (198)
117 1fxl_A Paraneoplastic encephal 99.7 4E-16 1.4E-20 100.9 9.3 64 60-123 2-65 (167)
118 1x4c_A Splicing factor, argini 99.7 5.8E-16 2E-20 94.7 9.4 59 58-123 13-71 (108)
119 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-17 1.1E-21 99.0 3.7 65 57-123 14-78 (101)
120 2cpx_A Hypothetical protein FL 99.7 6.9E-17 2.4E-21 99.6 5.2 68 56-123 21-88 (115)
121 2a3j_A U1 small nuclear ribonu 99.7 4.9E-16 1.7E-20 97.9 9.0 64 57-123 26-93 (127)
122 2fc9_A NCL protein; structure 99.7 4.5E-16 1.5E-20 93.9 8.3 64 56-123 11-74 (101)
123 2f3j_A RNA and export factor b 99.7 8.2E-16 2.8E-20 101.9 10.3 65 58-123 86-150 (177)
124 1why_A Hypothetical protein ri 99.7 8.6E-16 2.9E-20 92.1 9.5 62 56-123 13-74 (97)
125 3lqv_A PRE-mRNA branch site pr 99.7 7.1E-16 2.4E-20 95.1 9.3 64 57-123 5-68 (115)
126 2fc8_A NCL protein; structure 99.7 5.3E-16 1.8E-20 93.7 8.5 66 55-123 10-75 (102)
127 1x4f_A Matrin 3; structural ge 99.7 3E-16 1E-20 96.8 7.4 61 56-122 21-82 (112)
128 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-16 4.4E-21 103.6 5.9 67 57-123 86-152 (168)
129 2jvo_A Nucleolar protein 3; nu 99.7 5.6E-16 1.9E-20 94.9 8.3 62 54-123 25-86 (108)
130 1b7f_A Protein (SXL-lethal pro 99.7 3.9E-16 1.3E-20 101.3 8.1 65 59-123 2-66 (168)
131 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-15 3.7E-20 91.7 9.3 63 56-123 15-77 (97)
132 1fxl_A Paraneoplastic encephal 99.7 1.1E-16 3.7E-21 103.6 5.2 66 58-123 86-151 (167)
133 3nmr_A Cugbp ELAV-like family 99.7 1E-16 3.4E-21 104.6 5.1 65 58-123 93-157 (175)
134 2lcw_A RNA-binding protein FUS 99.5 1E-17 3.6E-22 103.7 0.0 67 57-123 4-78 (116)
135 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.6E-21 102.4 4.6 61 57-119 43-103 (139)
136 2j8a_A Histone-lysine N-methyl 99.6 2.7E-16 9.2E-21 98.6 6.2 60 61-120 3-74 (136)
137 2cjk_A Nuclear polyadenylated 99.6 4.1E-16 1.4E-20 101.2 7.3 63 59-121 2-64 (167)
138 2ytc_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.3E-20 88.4 9.3 60 57-122 9-68 (85)
139 2dnq_A RNA-binding protein 4B; 99.6 1.6E-15 5.6E-20 89.7 9.1 59 57-123 5-63 (90)
140 2jvr_A Nucleolar protein 3; RN 99.6 5.9E-16 2E-20 95.4 7.1 62 58-123 26-88 (111)
141 2xnq_A Nuclear polyadenylated 99.6 1.8E-15 6.1E-20 91.0 8.9 61 55-123 17-78 (97)
142 4f02_A Polyadenylate-binding p 99.6 4.3E-17 1.5E-21 110.5 1.9 62 60-123 103-164 (213)
143 2cpj_A Non-POU domain-containi 99.6 1.6E-15 5.4E-20 91.3 8.5 61 57-123 12-72 (99)
144 2la4_A Nuclear and cytoplasmic 99.6 1.9E-15 6.4E-20 91.2 8.8 59 59-123 26-84 (101)
145 2hvz_A Splicing factor, argini 99.6 7.5E-16 2.6E-20 92.9 6.8 58 61-123 1-58 (101)
146 2qfj_A FBP-interacting repress 99.6 1.5E-15 5E-20 102.3 9.0 64 60-123 28-91 (216)
147 2cq2_A Hypothetical protein LO 99.6 8.6E-16 3E-20 94.9 7.1 61 57-123 22-84 (114)
148 1x4g_A Nucleolysin TIAR; struc 99.6 1.8E-15 6E-20 92.6 8.3 60 58-123 23-82 (109)
149 2dgt_A RNA-binding protein 30; 99.6 2.9E-15 1E-19 88.9 9.1 60 56-123 6-65 (92)
150 1nu4_A U1A RNA binding domain; 99.6 4.5E-16 1.5E-20 93.1 5.5 64 57-123 5-72 (97)
151 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.4E-20 90.3 7.3 57 57-118 8-64 (89)
152 2voo_A Lupus LA protein; RNA-b 99.6 1.8E-15 6.2E-20 101.4 8.8 63 60-123 109-171 (193)
153 3md3_A Nuclear and cytoplasmic 99.6 1.2E-15 4.2E-20 98.5 7.5 62 61-123 1-62 (166)
154 2kvi_A Nuclear polyadenylated 99.6 2.7E-15 9.3E-20 89.8 8.2 59 57-123 7-66 (96)
155 3beg_B Splicing factor, argini 99.6 9.8E-16 3.3E-20 94.8 6.3 58 59-123 15-72 (115)
156 2qfj_A FBP-interacting repress 99.6 3.7E-15 1.3E-19 100.3 9.5 66 58-123 123-188 (216)
157 2e5g_A U6 snRNA-specific termi 99.6 6.5E-15 2.2E-19 87.8 9.1 59 59-123 7-65 (94)
158 1wf1_A RNA-binding protein RAL 99.6 5.7E-15 1.9E-19 90.4 9.1 58 58-123 25-83 (110)
159 1l3k_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 98.7 9.1 65 58-122 102-166 (196)
160 2dnp_A RNA-binding protein 14; 99.6 4.7E-15 1.6E-19 87.7 8.1 59 57-123 6-64 (90)
161 2dgu_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 89.4 8.6 58 58-123 9-66 (103)
162 1fjc_A Nucleolin RBD2, protein 99.6 1.4E-15 4.7E-20 90.9 5.7 62 57-123 13-74 (96)
163 1whx_A Hypothetical protein ri 99.6 2.9E-15 1E-19 92.1 7.2 59 59-123 9-67 (111)
164 3egn_A RNA-binding protein 40; 99.6 3.6E-16 1.2E-20 99.9 3.1 67 56-123 41-113 (143)
165 3sde_A Paraspeckle component 1 99.6 7.6E-16 2.6E-20 107.3 4.2 63 59-122 95-157 (261)
166 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-14 7.2E-19 86.3 9.9 59 57-123 12-72 (99)
167 3smz_A Protein raver-1, ribonu 99.6 1.5E-15 5.1E-20 106.5 5.3 65 59-123 94-158 (284)
168 1fje_B Nucleolin RBD12, protei 99.6 1.4E-15 4.7E-20 99.5 4.5 62 57-123 96-157 (175)
169 2cjk_A Nuclear polyadenylated 99.6 4.3E-15 1.5E-19 96.3 6.8 62 59-120 86-147 (167)
170 2e44_A Insulin-like growth fac 99.6 9.6E-15 3.3E-19 87.2 7.5 62 58-123 13-75 (96)
171 1wf0_A TDP-43, TAR DNA-binding 99.6 2.9E-15 1E-19 88.2 5.1 56 59-119 4-59 (88)
172 2cqh_A IGF-II mRNA-binding pro 99.6 4.1E-15 1.4E-19 88.4 5.8 60 57-123 5-65 (93)
173 3tyt_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 98.5 8.3 61 58-123 2-63 (205)
174 2hzc_A Splicing factor U2AF 65 99.6 1.2E-14 4.1E-19 85.2 7.2 59 58-123 4-73 (87)
175 1wg1_A KIAA1579 protein, homol 99.6 1.1E-14 3.6E-19 85.9 6.5 58 59-123 4-61 (88)
176 1sjr_A Polypyrimidine tract-bi 99.5 2.3E-14 8E-19 93.6 8.4 60 60-123 46-105 (164)
177 2e5i_A Heterogeneous nuclear r 99.5 9.6E-14 3.3E-18 87.0 10.8 57 61-123 26-83 (124)
178 3zzy_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 89.8 8.5 58 61-123 29-87 (130)
179 1x5p_A Negative elongation fac 99.5 6.2E-14 2.1E-18 83.9 9.5 59 57-123 12-70 (97)
180 3smz_A Protein raver-1, ribonu 99.5 2.6E-15 9E-20 105.2 3.6 66 57-123 181-247 (284)
181 3tyt_A Heterogeneous nuclear r 99.5 1.9E-14 6.7E-19 97.2 7.0 64 58-123 121-186 (205)
182 2ghp_A U4/U6 snRNA-associated 99.5 1.5E-15 5.3E-20 106.8 1.6 66 57-123 207-274 (292)
183 2adc_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 96.8 8.1 64 55-123 29-93 (229)
184 3pgw_A U1-A; protein-RNA compl 99.5 5E-14 1.7E-18 98.6 8.9 64 57-123 6-73 (282)
185 2pe8_A Splicing factor 45; RRM 99.5 3.3E-13 1.1E-17 82.2 9.1 66 58-123 6-77 (105)
186 2ghp_A U4/U6 snRNA-associated 99.5 2.4E-14 8.1E-19 100.7 4.0 64 59-123 116-180 (292)
187 2bz2_A Negative elongation fac 99.5 2E-13 7E-18 85.1 7.8 59 57-123 36-94 (121)
188 3u1l_A PRE-mRNA-splicing facto 99.5 1.5E-13 5.1E-18 94.8 7.8 61 57-123 131-200 (240)
189 1qm9_A Polypyrimidine tract-bi 99.5 7.8E-14 2.7E-18 92.9 5.3 61 58-123 118-179 (198)
190 2diu_A KIAA0430 protein; struc 99.4 5.1E-13 1.7E-17 79.5 7.9 55 59-123 7-67 (96)
191 1fje_B Nucleolin RBD12, protei 99.4 4.2E-14 1.4E-18 92.4 3.2 66 56-123 9-74 (175)
192 3tht_A Alkylated DNA repair pr 99.4 3.1E-13 1E-17 97.7 7.8 62 56-123 14-77 (345)
193 3pgw_A U1-A; protein-RNA compl 99.4 7.1E-13 2.4E-17 92.7 9.5 62 57-123 204-265 (282)
194 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.7E-18 91.3 5.9 59 60-123 3-62 (198)
195 2adc_A Polypyrimidine tract-bi 99.4 2.4E-13 8.3E-18 92.9 6.1 61 58-123 149-210 (229)
196 3sde_A Paraspeckle component 1 99.4 8.4E-13 2.9E-17 91.8 8.7 61 57-123 19-79 (261)
197 1jmt_A Splicing factor U2AF 35 99.3 6.6E-13 2.3E-17 80.7 3.2 58 65-123 20-89 (104)
198 2g4b_A Splicing factor U2AF 65 99.3 4.8E-12 1.6E-16 82.2 7.4 58 59-123 3-71 (172)
199 2dit_A HIV TAT specific factor 99.3 2.2E-11 7.7E-16 74.6 9.4 64 56-123 11-85 (112)
200 3v4m_A Splicing factor U2AF 65 99.3 8.3E-12 2.8E-16 76.0 7.0 66 58-123 3-80 (105)
201 2yh0_A Splicing factor U2AF 65 99.3 8.7E-12 3E-16 82.6 6.9 58 59-123 3-71 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 7E-11 2.4E-15 71.3 10.1 48 70-122 27-74 (100)
203 3ue2_A Poly(U)-binding-splicin 99.2 3.3E-11 1.1E-15 74.8 7.3 65 59-123 19-92 (118)
204 1owx_A Lupus LA protein, SS-B, 99.2 5.5E-11 1.9E-15 73.9 6.9 62 56-123 14-77 (121)
205 3s6e_A RNA-binding protein 39; 98.9 2.9E-09 1E-13 65.6 5.5 61 59-123 6-76 (114)
206 3dxb_A Thioredoxin N-terminall 98.5 1.8E-07 6.3E-12 63.2 6.6 52 72-123 141-196 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.5 2.1E-07 7.1E-12 54.8 5.6 58 57-123 4-69 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.4 6.6E-07 2.3E-11 52.9 4.8 59 56-123 11-78 (95)
209 1whv_A Poly(A)-specific ribonu 97.9 0.00014 4.6E-09 43.1 8.4 54 60-122 16-69 (100)
210 3ctr_A Poly(A)-specific ribonu 97.7 9.2E-05 3.1E-09 44.0 5.2 52 62-122 8-59 (101)
211 2l9w_A U4/U6 snRNA-associated- 97.6 0.00061 2.1E-08 41.3 8.1 59 58-122 19-82 (117)
212 1uw4_A UPF3X; nonsense mediate 97.2 0.0021 7.3E-08 37.6 7.2 62 61-122 2-65 (91)
213 2dhx_A Poly (ADP-ribose) polym 97.0 0.0059 2E-07 36.5 7.4 54 60-121 8-66 (104)
214 1wwh_A Nucleoporin 35, nucleop 96.7 0.0092 3.2E-07 36.6 7.0 58 58-122 22-79 (119)
215 3pq1_A Poly(A) RNA polymerase; 96.6 0.0015 5.2E-08 48.9 3.4 55 60-120 53-107 (464)
216 2l08_A Regulator of nonsense t 95.8 0.017 5.7E-07 34.1 4.4 62 60-121 9-72 (97)
217 4f25_A Polyadenylate-binding p 95.5 0.00048 1.6E-08 41.7 -3.2 58 9-76 56-113 (115)
218 1wey_A Calcipressin 1; structu 94.9 0.083 2.9E-06 31.5 5.6 57 60-122 5-66 (104)
219 3p3d_A Nucleoporin 53; structu 94.3 0.042 1.4E-06 34.2 3.3 61 61-122 8-82 (132)
220 3d45_A Poly(A)-specific ribonu 94.2 0.31 1.1E-05 36.8 8.6 54 60-122 440-493 (507)
221 2hvz_A Splicing factor, argini 92.8 0.0045 1.5E-07 36.1 -2.9 53 9-69 48-100 (101)
222 3uzu_A Ribosomal RNA small sub 35.5 13 0.00045 25.6 1.2 35 61-95 115-149 (279)
223 3fut_A Dimethyladenosine trans 34.9 42 0.0014 22.9 3.6 34 61-95 111-144 (271)
224 3fry_A Probable copper-exporti 28.6 65 0.0022 16.4 6.4 56 61-123 7-62 (73)
225 1qyr_A KSGA, high level kasuga 27.3 63 0.0022 21.7 3.5 30 62-91 92-121 (252)
226 3tqs_A Ribosomal RNA small sub 27.3 18 0.00063 24.4 0.8 33 63-95 99-131 (255)
227 3ftd_A Dimethyladenosine trans 27.2 54 0.0019 21.9 3.1 31 62-92 97-127 (249)
228 3h7h_B Transcription elongatio 26.5 53 0.0018 19.2 2.6 32 86-122 40-71 (106)
229 1i4w_A Mitochondrial replicati 25.8 50 0.0017 23.6 2.8 22 62-83 144-165 (353)
230 2q2k_A Hypothetical protein; p 25.6 18 0.00063 18.7 0.4 21 64-84 42-62 (70)
231 3mfb_A Uncharacterized protein 22.4 1.5E+02 0.0053 18.6 4.4 36 72-107 3-41 (157)
232 4eyt_A Telomerase associated p 20.8 1.3E+02 0.0045 17.2 8.0 56 59-122 11-66 (129)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=113.00 Aligned_cols=66 Identities=33% Similarity=0.522 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 456799999999999999999999999999999999999899999999999999999999999875
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=111.49 Aligned_cols=66 Identities=23% Similarity=0.262 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|++|++.||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 356799999999999999999999999999999999999899999999999999999999999876
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=6.3e-19 Score=103.86 Aligned_cols=67 Identities=27% Similarity=0.446 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 3456789999999999999999999999999999999999889999999999999999999999764
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=108.46 Aligned_cols=63 Identities=30% Similarity=0.536 Sum_probs=59.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
+++|||+|||+++++++|+++|++|| .|..+++++++.+|.++|||||+|.+.++|.+|++.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 35899999999999999999999999 7999999999989999999999999999999999865
No 5
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=108.48 Aligned_cols=66 Identities=26% Similarity=0.461 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC--eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGR--VKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..-.+|||+|||+++++++|+++|++||. +..+++++|+.+|+++|||||+|.+.++|.+|++.||
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ln 74 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQ 74 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhc
Confidence 34568999999999999999999999995 6789999999999999999999999999999998764
No 6
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=9.8e-19 Score=106.54 Aligned_cols=68 Identities=21% Similarity=0.434 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 45667899999999999999999999999999999999999899999999999999999999998775
No 7
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=103.84 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKN--------LRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4556789999999999999999999999999999 9999998899999999999999999999998775
No 8
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=105.27 Aligned_cols=68 Identities=32% Similarity=0.480 Sum_probs=63.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 45567899999999999999999999999999999999998899999999999999999999999875
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=102.83 Aligned_cols=68 Identities=37% Similarity=0.573 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++.++|||+|||+.+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 45667899999999999999999999999999999999998889999999999999999999999775
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=104.98 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 345667899999999999999999999999999999999998899999999999999999999999775
No 11
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=105.67 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+.+|.+||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 44567899999999999999999999999999999999999899999999999999999999999874
No 12
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=104.10 Aligned_cols=67 Identities=19% Similarity=0.483 Sum_probs=63.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCee-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVK-NLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|. .+.+++++.+|.++|||||+|.+.++|+.|++.||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 44578999999999999999999999999999 99999999899999999999999999999999775
No 13
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=102.84 Aligned_cols=66 Identities=20% Similarity=0.411 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 456799999999999999999999999999999999998899999999999999999999998764
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-18 Score=103.28 Aligned_cols=67 Identities=27% Similarity=0.531 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++ ||
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~ 72 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 72 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence 34567899999999999999999999999999999999998899999999999999999999998 54
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=101.50 Aligned_cols=66 Identities=33% Similarity=0.633 Sum_probs=61.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 456799999999999999999999999999999999998899999999999999999999999775
No 16
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=4.1e-19 Score=107.55 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCC------CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSH------FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~------~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+ ++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|++.||
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3467999999999 99999999999999999999999999889999999999999999999998875
No 17
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=105.62 Aligned_cols=68 Identities=35% Similarity=0.488 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|+.|++.||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 45567899999999999999999999999999999999998889999999999999999999999775
No 18
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.8e-18 Score=101.35 Aligned_cols=67 Identities=24% Similarity=0.460 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.+++++.++.++|||||+|.+.++|..|++.||
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 3456799999999999999999999999999999999998899999999999999999999998775
No 19
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=5.4e-19 Score=104.99 Aligned_cols=63 Identities=19% Similarity=0.511 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYG--RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+|||+|||+++++++|+++|++|| .|..+.++.++.+|+++|||||+|.+.++|++|++.||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 4799999999999999999999999 99999999999899999999999999999999998775
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.5e-18 Score=105.05 Aligned_cols=68 Identities=32% Similarity=0.614 Sum_probs=63.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.+++++.++.++|||||+|.+.++|+.|++.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 45567899999999999999999999999999999999998899999999999999999999999875
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=104.46 Aligned_cols=67 Identities=31% Similarity=0.482 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 4557899999999999999999999999999999999999899999999999999999999999765
No 22
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=107.11 Aligned_cols=69 Identities=29% Similarity=0.586 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+++++++|+++|.+||.|..+.+++++.+|.++|||||+|.+.++|..|++.+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 345567899999999999999999999999999999999998889999999999999999999998764
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=101.50 Aligned_cols=68 Identities=24% Similarity=0.427 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 34567899999999999999999999999999999999998889999999999999999999998775
No 24
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=4.7e-18 Score=103.33 Aligned_cols=67 Identities=25% Similarity=0.467 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~ 77 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALH 77 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999999998 89999999999999999999999775
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.9e-18 Score=99.98 Aligned_cols=63 Identities=29% Similarity=0.538 Sum_probs=60.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+++++++|+++|.+||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 589999999999999999999999999999999998899999999999999999999999775
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=3.7e-18 Score=105.48 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.+++++.++.++|||||+|.+.++|+.|++.||
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 44567899999999999999999999999999999999998899999999999999999999998875
No 27
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=101.96 Aligned_cols=66 Identities=32% Similarity=0.585 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.+++++.++.++|||||+|.+.++|..|++.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 356799999999999999999999999999999999998889999999999999999999999775
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=102.97 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 4456899999999999999999999999999999999998899999999999999999999998775
No 29
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=104.62 Aligned_cols=68 Identities=28% Similarity=0.519 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 89 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 45567899999999999999999999999999999999998899999999999999999999998765
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=4.6e-18 Score=105.46 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 45567899999999999999999999999999999999998899999999999999999999999875
No 31
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=105.21 Aligned_cols=68 Identities=29% Similarity=0.483 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.+++++.++.++|||||+|.+.++|++|++.||
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 45567899999999999999999999999999999999998899999999999999999999998765
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=103.17 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998899999999999999999999998775
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=3.1e-18 Score=102.68 Aligned_cols=65 Identities=29% Similarity=0.461 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 35799999999999999999999999999999999998899999999999999999999998765
No 34
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=104.60 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=59.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
..+.++|||+|||+++++++|+++|++||.|..+.+++++. |.++|||||+|.+.++|..|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH
Confidence 34467999999999999999999999999999999999985 9999999999999999999997
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=4.1e-18 Score=107.64 Aligned_cols=69 Identities=38% Similarity=0.576 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++.++|||+|||+++++++|+++|.+||.|..+.+++++.+|.++|||||+|.+.++|++|++.||
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 345667899999999999999999999999999999999998899999999999999999999999775
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=103.21 Aligned_cols=67 Identities=24% Similarity=0.543 Sum_probs=62.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRD-IVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.+ +.++.++|||||+|.+.++|..|++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 3456789999999999999999999999999999999998 779999999999999999999999987
No 37
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=101.39 Aligned_cols=67 Identities=28% Similarity=0.449 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 34557799999999999999999999999999999999998 99999999999999999999998775
No 38
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=111.11 Aligned_cols=66 Identities=26% Similarity=0.483 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYG--RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+++++++|+++|.+|| .|..+.++.|+.+|.++|||||+|.+.++|+.|++.||
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln 120 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 3567999999999999999999999999 99999999999999999999999999999999999875
No 39
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=109.01 Aligned_cols=67 Identities=21% Similarity=0.413 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKN--LRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....++|||+|||+++++++|+++|.+||.|.. +++++++.+|+++|||||+|.+. +|..|+..||
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~ 87 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQ 87 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhc
Confidence 4456789999999999999999999999999976 99999999999999999999999 9999999875
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=104.05 Aligned_cols=68 Identities=24% Similarity=0.465 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998899999999999999999999998775
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=102.37 Aligned_cols=66 Identities=33% Similarity=0.589 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhc-cCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSK-YGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+ ||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 72 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQ 72 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHcc
Confidence 455679999999999999999999999 9999999999998 99999999999999999999999775
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=5.7e-18 Score=103.84 Aligned_cols=68 Identities=34% Similarity=0.499 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+..||
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 34567899999999999999999999999999999999998899999999999999999999999765
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=106.99 Aligned_cols=68 Identities=25% Similarity=0.419 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....++|||+|||+++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|++.||
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 105 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLN 105 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 45567899999999999999999999999999999999999899999999999999999999999875
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=4.1e-18 Score=105.55 Aligned_cols=62 Identities=27% Similarity=0.506 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+|||+|||+++++++|+++|++||.|..+++++++ +.++|||||+|.+.++|+.|++.||
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcC
Confidence 4589999999999999999999999999999999985 4589999999999999999998875
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=102.10 Aligned_cols=65 Identities=28% Similarity=0.482 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNL-RLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+++++++|+++|.+||.|..+ .+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 46799999999999999999999999999999 999998899999999999999999999999775
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=101.37 Aligned_cols=67 Identities=22% Similarity=0.432 Sum_probs=62.0
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+.+++++|+++|.+||.|..+.++.+ +|.++|||||+|.+.++|..|++.||
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 34556789999999999999999999999999999999998 89999999999999999999999775
No 47
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=7e-18 Score=114.38 Aligned_cols=67 Identities=28% Similarity=0.525 Sum_probs=61.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|..|++.+|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~ 78 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhh
Confidence 4456799999999999999999999999999999999999899999999999999999999998775
No 48
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=99.79 Aligned_cols=63 Identities=30% Similarity=0.601 Sum_probs=59.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999999998889999999999999999999998765
No 49
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=100.45 Aligned_cols=66 Identities=23% Similarity=0.382 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 445667999999999999999999999999999999999988999999999999999999999974
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=100.19 Aligned_cols=67 Identities=21% Similarity=0.384 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998 59999999999999999999999765
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=103.97 Aligned_cols=66 Identities=29% Similarity=0.519 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++.++|||+|||+++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|+.|++.||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 4556799999999999999999999999999999999998 99999999999999999999999875
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=105.85 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+ .||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 34679999999999999999999999999999999999988999999999999999999999 664
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=101.71 Aligned_cols=66 Identities=26% Similarity=0.417 Sum_probs=60.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIV---TGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++. ++.++|||||+|.+.++|..|++.||
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 3567999999999999999999999999999999999876 55899999999999999999999875
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.5e-17 Score=101.40 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998 99999999999999999999999875
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=101.30 Aligned_cols=66 Identities=30% Similarity=0.498 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 456678999999999999999999999999999999999988999999999999999999999975
No 56
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=101.63 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 87 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFN 87 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998 99999999999999999999999775
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=103.16 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=63.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCee--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVK--------NLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|. .+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 345678999999999999999999999999998 69999998899999999999999999999999775
No 58
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.1e-17 Score=100.19 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=60.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+|| |..+.+++++.+|.++|||||+|.+.++|..|+ .||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 76 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 76 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC
Confidence 45578999999999999999999999996 999999999989999999999999999999999 664
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1.2e-17 Score=104.65 Aligned_cols=68 Identities=31% Similarity=0.464 Sum_probs=63.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+.+|.+||.|..+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34557899999999999999999999999999999999998899999999999999999999998775
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=101.24 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=60.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVT-GASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+|| |..+.+++++.+ |.++|||||+|.+.++|..|+ .||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 45568999999999999999999999999 999999999877 999999999999999999999 664
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.6e-18 Score=101.21 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+..++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|++.||
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4456799999999999999999999999999888888888899999999999999999999998875
No 62
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=2.2e-17 Score=107.07 Aligned_cols=68 Identities=28% Similarity=0.524 Sum_probs=63.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|++|++.||
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999999899999999999999999999999875
No 63
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=1.8e-17 Score=108.52 Aligned_cols=67 Identities=34% Similarity=0.519 Sum_probs=62.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|.++|||||+|.+.++|..||..||
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 135 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 135 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhC
Confidence 4456799999999999999999999999999999999998899999999999999999999999875
No 64
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=1.3e-17 Score=98.37 Aligned_cols=63 Identities=17% Similarity=0.459 Sum_probs=59.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+ .||
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC
Confidence 468999999999999999999999999999999999889999999999999999999999 664
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=101.41 Aligned_cols=67 Identities=28% Similarity=0.341 Sum_probs=62.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34557899999999999999999999999999999999998 79999999999999999999999775
No 66
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=103.72 Aligned_cols=68 Identities=24% Similarity=0.444 Sum_probs=63.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.+++++.+|.++|||||+|.+.++|.+|++.||
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998899999999999999999999998775
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=101.36 Aligned_cols=60 Identities=22% Similarity=0.357 Sum_probs=55.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|..|++.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHh
Confidence 445679999999999999999999999999999999875 689999999999999999865
No 68
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=97.47 Aligned_cols=61 Identities=21% Similarity=0.424 Sum_probs=56.5
Q ss_pred cEEEEcCCCCCC------cHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFT------SEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~------~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+.+ ++++|+++|++||.|..+.+++ .+|.++|||||+|.+.++|..|++.||
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~ln 68 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNAD 68 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhc
Confidence 689999999999 7899999999999999999873 489999999999999999999998775
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=6.6e-18 Score=96.81 Aligned_cols=59 Identities=31% Similarity=0.576 Sum_probs=56.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 58999999999999999999999999999999998899999999999999999999986
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=3.9e-17 Score=96.98 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.++++ +|.++|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 345679999999999999999999999999999999885 88999999999999999999999765
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=6.1e-18 Score=107.60 Aligned_cols=68 Identities=35% Similarity=0.517 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|++.||
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 110 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 110 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 44557899999999999999999999999999999999998899999999999999999999998765
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=7.4e-18 Score=100.68 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|++.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 35799999999999999999999999999988888888899999999999999999999999765
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=101.01 Aligned_cols=65 Identities=32% Similarity=0.515 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45799999999999999999999999999999999998899999999999999999999998775
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.2e-17 Score=104.41 Aligned_cols=64 Identities=20% Similarity=0.459 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|+ .||
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~ 98 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD 98 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC
Confidence 3579999999999999999999999999999999999889999999999999999999999 554
No 75
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=7.8e-17 Score=100.76 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=62.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+.+++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 4557899999999999999999999999999999999998 99999999999999999999999765
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=97.56 Aligned_cols=65 Identities=28% Similarity=0.524 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGA-SRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+||.|..+.++.++.++. ++|||||+|.+.++|..|++.||
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 356999999999999999999999999999999999886665 89999999999999999999775
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=3.7e-17 Score=105.98 Aligned_cols=67 Identities=36% Similarity=0.544 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 133 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 133 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 3457899999999999999999999999999999999998899999999999999999999999875
No 78
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=9.9e-18 Score=101.33 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDI-VTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....++|||+|||+++++++|+++|++|| |..+.+++++ .+|+++|||||+|.+.++|..|+ .||
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~ 81 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 81 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC
Confidence 455678999999999999999999999999 9999999998 58999999999999999999999 664
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-17 Score=97.98 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=59.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.+++++ +.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhC
Confidence 44567899999999999999999999999999999999985 3368999999999999999999775
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=103.29 Aligned_cols=64 Identities=28% Similarity=0.547 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 4468999999999999999999999999999999999988999999999999999999999975
No 81
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-16 Score=96.92 Aligned_cols=66 Identities=18% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.++.++. .++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhC
Confidence 445678999999999999999999999999999999999863 389999999999999999998765
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=100.43 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=59.7
Q ss_pred CCCCCcEEEEcCCCCCC------cHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFT------SEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~------~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....++|||+|||+.+ ++++|+.+|++||.|..+.+++ .+|.++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34457899999999999 7899999999999999999883 489999999999999999999999875
No 83
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=99.12 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKN-LRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
....++|||+|||+++++++|+++|.+||.|.. +.++.+ .+|+++|||||+|.+.++|..|++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh
Confidence 355679999999999999999999999999987 888888 5999999999999999999999975
No 84
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=100.81 Aligned_cols=65 Identities=23% Similarity=0.444 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGR-VKNLRLV-RDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
.+.++|||+|||+++++++|+++|.+||. |..+.++ .++.+|.++|||||+|.+.++|..|++.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 45679999999999999999999999998 9999998 78878999999999999999999999877
No 85
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.9e-18 Score=108.46 Aligned_cols=68 Identities=28% Similarity=0.510 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 34567899999999999999999999999999999999998899999999999999999999999775
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-17 Score=95.32 Aligned_cols=64 Identities=25% Similarity=0.510 Sum_probs=59.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+++++++|+++|.+| .|..+.++++ .+|+++|||||+|.+.++|..|++ ||
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~ 70 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN 70 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC
Confidence 4456799999999999999999999999 9999999999 599999999999999999999998 65
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=101.75 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=60.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCe-eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRV-KNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
...+.++|||+|||+++++++|+++|.+||.| ..+.+++++ +|+++|||||+|.+.++|+.||+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh
Confidence 34557899999999999999999999999999 889999998 999999999999999999999875
No 88
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=8.4e-18 Score=96.32 Aligned_cols=60 Identities=30% Similarity=0.583 Sum_probs=57.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 589999999999999999999999999999999988999999999999999999999975
No 89
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=101.76 Aligned_cols=64 Identities=22% Similarity=0.450 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHc
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVT---GASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...++|||+|||+++++++|+++|.+||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4467999999999999999999999999999 888888766 799999999999999999999876
No 90
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=99.52 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=57.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
....++|||+|||+++++++|+++|.+||. ..+.+++++ +|+++|||||+|.+.++|++||+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH
Confidence 445679999999999999999999999994 599999998 99999999999999999999995
No 91
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=97.11 Aligned_cols=65 Identities=25% Similarity=0.494 Sum_probs=58.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.|..+.+.. ++.++|||||+|.+.++|+.|++.||
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 345678999999999999999999999999999998865 45689999999999999999998775
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.4e-17 Score=113.31 Aligned_cols=65 Identities=18% Similarity=0.495 Sum_probs=60.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC--CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYG--RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+|| .|..|.|++++.+|+++|||||+|.+.++|++||+.||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 567999999999999999999999999 99999999999999999999999999999999998775
No 93
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=101.15 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHh
Confidence 4556789999999999999999999999999999999875 699999999999999999865
No 94
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=2.7e-17 Score=104.81 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGR---VKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|++||. |..+.+++++. |+++|||||+|.+.++|++|++ ||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~ 108 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD 108 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 445679999999999999999999999999 88999999985 9999999999999999999998 54
No 95
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=9.4e-18 Score=99.34 Aligned_cols=62 Identities=26% Similarity=0.504 Sum_probs=59.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.+ |..|+..||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 58999999999999999999999999999999999888999999999999999 999998875
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=99.88 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
..+.++|||+|||+++++++|+++|.+| .|..+.+++++ +|+++|||||+|.+.++|++||.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHh
Confidence 3446799999999999999999999999 89999999998 59999999999999999999994
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=99.76 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=61.0
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 54 KAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 54 ~~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....+.++|||+|||+++++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|..|++.||
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcC
Confidence 3345667899999999999999999999999999999999885 4589999999999999999999765
No 98
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=100.60 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGR---VKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
....++|||+|||+++++++|+++|.+||. |..+.+++++. |+++|||||+|.+.++|..|++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH
Confidence 456789999999999999999999999988 89999999985 9999999999999999999997
No 99
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=103.32 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=58.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|..||+ ||
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~ 87 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH 87 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence 4456899999999999999999999999999886566665699999999999999999999998 54
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=4.3e-17 Score=101.42 Aligned_cols=63 Identities=24% Similarity=0.308 Sum_probs=58.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC---eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGR---VKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
..+.++|||+|||+++++++|+++|.+||. |..+.+++++. |+++|||||+|.+.++|++||+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh
Confidence 445679999999999999999999999998 89999999984 9999999999999999999998
No 101
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=96.18 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLR----KAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+ ++|.+||.|..+.++.++.+ +|||||+|.+.++|+.|++.||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhC
Confidence 345799999999999999999 99999999999999998744 8899999999999999999875
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=97.14 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=55.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+.++|||+|||+.+++++|+.+|.+||.|..+.++++ +|||||+|.+.++|..|++.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 4456789999999999999999999999999999988764 689999999999999999865
No 103
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=8.6e-18 Score=108.35 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=75.6
Q ss_pred ceeeeccccCCc-ccCCCCCcccCCCChHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccC
Q 033266 7 NSVFYAGSYHPI-QAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYG 85 (123)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~g~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G 85 (123)
+.+.|.+++..+ ++..++| .+......... . ..................+.++|||+|||+++++++|+++|++||
T Consensus 22 ~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 22 DAATAEKVFKQYANDNGVDG-EWTYDDATKTF-T-VTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp SHHHHTTTHHHHHHHHTCCC-EEEEETTTTEE-E-EECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCCC-ceecccccCcc-c-cccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 445566666666 7777777 55322111000 0 000000011112233445678999999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 86 RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 86 ~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.|..+.++++ ++|||||+|.+.++|..|++.||
T Consensus 99 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 99 PLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp CEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHS
T ss_pred CEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcC
Confidence 9999999876 47999999999999999999775
No 104
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.1e-17 Score=98.45 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSH-FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~-~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++.++|||+|||+ .+++++|+.+|.+||.|..+.++++ +|||||+|.+.++|..|++.||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHc
Confidence 45678999999999 9999999999999999999999875 4799999999999999998763
No 105
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=6.3e-17 Score=101.85 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=58.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCee--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVK--NLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..+.++|||+|||+++++++|+++|++| .|. .+.+++++. |+++|||||+|.+.++|.+|++.+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHC
Confidence 4456799999999999999999999999 677 899999985 999999999999999999999754
No 106
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.6e-17 Score=100.48 Aligned_cols=62 Identities=32% Similarity=0.606 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
...++|||+|||+++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|+.|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 446799999999999999999999999999999999998 99999999999999999999987
No 107
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=96.27 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+++++|||+|||+++++++|+++|++||.|..+.+++. +|+|||+|.+.++|.+|++.||
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhc
Confidence 3456789999999999999999999999999999998753 6899999999999999998763
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.6e-16 Score=105.50 Aligned_cols=66 Identities=30% Similarity=0.514 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
...+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 345678999999999999999999999999999999999998999999999999999999999975
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=96.05 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|..|++.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 455679999999999999999999999999999988754 689999999999999999865
No 110
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=5.4e-17 Score=105.83 Aligned_cols=66 Identities=29% Similarity=0.558 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 157 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 346799999999999999999999999999999999998899999999999999999999999875
No 111
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.4e-17 Score=100.90 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCe----eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRV----KNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
+.++|||+|||+++++++|+++|++||.| ..+.+++++ +|+++|||||+|.+.++|++||+.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 45699999999999999999999999875 689999985 999999999999999999999975
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=98.00 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHhhccCCeeEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLR---KAMSKYGRVKNLRLVRDIVTG---ASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+ ++|.+||.|..+.+++++.++ .++|||||+|.+.++|+.|++.||
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 3456799999999999999999 999999999999999887644 566999999999999999999875
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=2e-16 Score=103.17 Aligned_cols=65 Identities=28% Similarity=0.452 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTG--ASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+++++++|+++|.+||.|..+.+++++.+| .++|||||+|.+.++|..|++.||
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999998776 899999999999999999998765
No 114
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=2e-16 Score=117.58 Aligned_cols=75 Identities=43% Similarity=0.748 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 49 PLGDPKAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 49 ~~~~~~~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+...+.....+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||..||
T Consensus 91 p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 91 PHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 444444455667899999999999999999999999999999999998899999999999999999999998876
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.6e-16 Score=93.60 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.-|||+||++.++|++|+++|.+||+|..+.+.. ++|||||+|.+.++|..|++.||
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln 64 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhc
Confidence 45899999999999999999999999999999865 58999999999999999999886
No 116
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=4.9e-17 Score=108.19 Aligned_cols=66 Identities=30% Similarity=0.595 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 177 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLN 177 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 567899999999999999999999999999999999998899999999999999999999999875
No 117
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=4e-16 Score=100.91 Aligned_cols=64 Identities=27% Similarity=0.523 Sum_probs=60.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 4699999999999999999999999999999999998899999999999999999999998764
No 118
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.8e-16 Score=94.69 Aligned_cols=59 Identities=25% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.|++.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHC
Confidence 44679999999999999999999999999999999876 799999999999999999875
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-17 Score=98.97 Aligned_cols=65 Identities=25% Similarity=0.436 Sum_probs=58.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|.. .++.++.+|.++|||||+|.+.++|..|++ ||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~ 78 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 78 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence 445789999999999999999999999999877 666666689999999999999999999998 64
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.9e-17 Score=99.60 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=56.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+++|.+||.|..+.+..+..+|.++|||||+|.+.++|..|++.||
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 88 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVN 88 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHST
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999998443222222278899999999999999999999875
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=97.90 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=56.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLR----KAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|..|++.||
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~ln 93 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQ 93 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHST
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHC
Confidence 4557799999999999998876 6999999999887753 68899999999999999999999875
No 122
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=93.93 Aligned_cols=64 Identities=25% Similarity=0.480 Sum_probs=56.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.| .++.+ .++.++|||||+|.+.++|+.|++.||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 34567899999999999999999999999976 56666 489999999999999999999999775
No 123
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=8.2e-16 Score=101.88 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=61.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+++|.+||.|..+.++.++ +|.++|||||+|.+.++|..|++.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~ln 150 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 150 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHST
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhC
Confidence 456899999999999999999999999999999999998 99999999999999999999999775
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=8.6e-16 Score=92.09 Aligned_cols=62 Identities=21% Similarity=0.460 Sum_probs=55.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|++.||
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHC
Confidence 3455689999999999999999999999999999988754 6899999999999999999775
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=7.1e-16 Score=95.09 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=57.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++.++|||+|||+.+++++|+.+|++||.|..+.++.+ +.++|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcC
Confidence 345679999999999999999999999999999999865 4558999999999999999999775
No 126
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=93.71 Aligned_cols=66 Identities=35% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+++++++|+++|.+|+ .+.++.++.++.++|||||+|.+.++|..|++.||
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 3456678999999999999999999999773 67788888899999999999999999999999775
No 127
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=96.83 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=55.3
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 56 IGDPHCTVFVGRLSHF-TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~-~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+.++|||+|||++ +++++|+++|.+||.|..+.+++. +|||||+|.+.++|..|++.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHh
Confidence 3556789999999998 999999999999999999998743 689999999999999999865
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=1.3e-16 Score=103.55 Aligned_cols=67 Identities=28% Similarity=0.503 Sum_probs=62.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 152 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 152 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3456799999999999999999999999999999999998899999999999999999999999875
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=5.6e-16 Score=94.94 Aligned_cols=62 Identities=23% Similarity=0.411 Sum_probs=54.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 54 KAIGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 54 ~~~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....+.++|||+|||+++++++|+++|.+||.|..+.++ +|||||+|.+.++|..|++.||
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~ 86 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVH 86 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHT
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcC
Confidence 3345667899999999999999999999999999999887 6899999999999999999775
No 130
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=3.9e-16 Score=101.27 Aligned_cols=65 Identities=29% Similarity=0.486 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 35799999999999999999999999999999999998899999999999999999999998764
No 131
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=91.70 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=55.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.....++|||+|||+++++++|+++|.+||.|. +.++. +.++|||||+|.+.++|+.|++.||
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhC
Confidence 345578999999999999999999999999986 56654 3578999999999999999998875
No 132
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=1.1e-16 Score=103.61 Aligned_cols=66 Identities=27% Similarity=0.480 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+.+|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999998899999999999999999999999875
No 133
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=1e-16 Score=104.60 Aligned_cols=65 Identities=28% Similarity=0.493 Sum_probs=61.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+++|++||.|..+.+++++ +|.++|||||+|.+.++|.+|++.||
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999997 79999999999999999999998875
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1e-17 Score=103.65 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=61.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKN--------LRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+++|.+||.|.. +.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 345679999999999999999999999999998 8899998889999999999999999999998765
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=1.1e-16 Score=102.39 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 119 (123)
....++|||+|||+++++++|+++|.+|| +..+.+++++ +|+++|||||+|.+.++|++||
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH
Confidence 34567999999999999999999999999 7799999998 5999999999999999999999
No 136
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.7e-16 Score=98.65 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=53.8
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH
Q 033266 61 CTVFVGRL----SHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYET----ERE----MRRAYE 120 (123)
Q Consensus 61 ~~l~v~~l----~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~----~~~----a~~al~ 120 (123)
..|||+|| |+.+++.+|+.+|++||+|.++.++.|+.||.++|||||+|.+ .++ |..|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 58999999 9999999999999999999999999999999999999999995 333 677766
No 137
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=4.1e-16 Score=101.16 Aligned_cols=63 Identities=35% Similarity=0.721 Sum_probs=60.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 457999999999999999999999999999999999988999999999999999999999975
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=88.38 Aligned_cols=60 Identities=23% Similarity=0.470 Sum_probs=55.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..+.++|||+|||+.+++++|+++|.+||.|..+.++++ +|||||+|.+.++|..|++.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHh
Confidence 345679999999999999999999999999999999864 689999999999999999876
No 139
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=89.67 Aligned_cols=59 Identities=22% Similarity=0.453 Sum_probs=54.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||.|..+.++ +|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~ 63 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLH 63 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhc
Confidence 4556899999999999999999999999999999887 5799999999999999998775
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.64 E-value=5.9e-16 Score=95.41 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+++++++|+++|.+|| .|..+.+.. +.++|||||+|.+.++|+.|++.||
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcC
Confidence 3467999999999999999999999999 899988753 2478999999999999999999875
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=1.8e-15 Score=90.95 Aligned_cols=61 Identities=20% Similarity=0.450 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSH-FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~-~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|..|++.||
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~ 78 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXES 78 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC
Confidence 3456678999999998 99999999999999999999883 6899999999999999999775
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=4.3e-17 Score=110.45 Aligned_cols=62 Identities=27% Similarity=0.497 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+|||+|||+.+++++|+++|.+||.|..+.++++. +.++|||||+|.+.++|.+|++.||
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 4689999999999999999999999999999999984 4579999999999999999999875
No 143
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=91.25 Aligned_cols=61 Identities=26% Similarity=0.437 Sum_probs=55.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+++|.+||.|..+.+.++ +|||||+|.+.++|..|++.||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhC
Confidence 455679999999999999999999999999999998754 6899999999999999998775
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.9e-15 Score=91.18 Aligned_cols=59 Identities=19% Similarity=0.457 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+||.|..+.+.+ ++|||||+|.+.++|..|++.||
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhC
Confidence 457999999999999999999999999999998873 47899999999999999998765
No 145
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=92.94 Aligned_cols=58 Identities=31% Similarity=0.566 Sum_probs=54.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|..|++.||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999999876 68999999999999999998763
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=1.5e-15 Score=102.27 Aligned_cols=64 Identities=34% Similarity=0.549 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.||
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 91 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc
Confidence 4699999999999999999999999999999999998899999999999999999999999764
No 147
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.6e-16 Score=94.95 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=54.4
Q ss_pred CCCCcEEEE--cCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFV--GRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v--~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++||| +||++++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|++.||
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~ln 84 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 345678999 78999999999999999999999987753 26899999999999999999886
No 148
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=92.59 Aligned_cols=60 Identities=23% Similarity=0.584 Sum_probs=55.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+.+|.+||.|..+.++.+ +|||||+|.+.++|..|++.||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcC
Confidence 44679999999999999999999999999999999876 6899999999999999998765
No 149
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=88.92 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=54.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|..|++.||
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence 455678999999999999999999999999999999874 399999999999999998775
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=4.5e-16 Score=93.15 Aligned_cols=64 Identities=22% Similarity=0.423 Sum_probs=57.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLR----KAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+ .+|++||.|..+.+++ +|.++|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 3456799999999999999999 9999999999998863 57788999999999999999998765
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=90.29 Aligned_cols=57 Identities=23% Similarity=0.455 Sum_probs=49.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 118 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~a 118 (123)
..+..+|||+|||+++++++|+++|++||.|..+.++++ ++|||||+|.+.++|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHH
Confidence 345679999999999999999999999999999999875 689999999999998853
No 152
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.8e-15 Score=101.45 Aligned_cols=63 Identities=19% Similarity=0.376 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++|||+|||+++++++|+++|++||.|..++++++. +|.++|||||+|.+.++|..|+..+|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999987 69999999999999999999998654
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-15 Score=98.51 Aligned_cols=62 Identities=26% Similarity=0.467 Sum_probs=57.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++|||+|||+++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|..|++.||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 589999999999999999999999999999999997 68899999999999999999998764
No 154
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.7e-15 Score=89.81 Aligned_cols=59 Identities=22% Similarity=0.515 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSH-FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~-~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++.++|||+|||+ .+++++|+++|.+||.|..+.+. +|||||+|.+.++|..|++.||
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC
Confidence 45678999999999 99999999999999999999884 6899999999999999999765
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=9.8e-16 Score=94.78 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+||.|..+.++.+ |||||+|.+.++|+.||+.||
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhC
Confidence 3579999999999999999999999999999998765 899999999999999999875
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=3.7e-15 Score=100.27 Aligned_cols=66 Identities=26% Similarity=0.543 Sum_probs=62.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.||
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 345799999999999999999999999999999999998899999999999999999999999875
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-15 Score=87.78 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=52.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+.+|.+||.|..+ +.++.+|. ||||+|.+.++|..|++ ||
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~ 65 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QS 65 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cC
Confidence 45699999999999999999999999999987 55555665 99999999999999998 64
No 158
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=5.7e-15 Score=90.44 Aligned_cols=58 Identities=34% Similarity=0.571 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHF-TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~-~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||++ +++++|+++|.+||.|..+.+ ++|||||+|.+.++|+.|++.||
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC
Confidence 34579999999999 999999999999999999988 46899999999999999998775
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=4.1e-15 Score=98.69 Aligned_cols=65 Identities=25% Similarity=0.471 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC
Confidence 34579999999999999999999999999999999999889999999999999999999999753
No 160
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=87.68 Aligned_cols=59 Identities=29% Similarity=0.466 Sum_probs=53.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+.+|.+||.|..+.+++ +||||+|.+.++|..|++.||
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhC
Confidence 45567999999999999999999999999999999874 399999999999999999775
No 161
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=5.6e-15 Score=89.45 Aligned_cols=58 Identities=24% Similarity=0.508 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+||.|..+.++ ++||||+|.+.++|..|++.||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC
Confidence 456799999999999999999999999999999886 3599999999999999999775
No 162
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=90.90 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=55.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+++|.+||.|..+ ..++.++|||||+|.+.++|..|++.||
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 4457899999999999999999999999987765 2378999999999999999999999775
No 163
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=92.10 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+.+++++|+++|.+||.|..+.++. .+|||||+|.+.++|..|++.||
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 357999999999999999999999999999998864 46899999999999999999875
No 164
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=3.6e-16 Score=99.92 Aligned_cols=67 Identities=21% Similarity=0.457 Sum_probs=56.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEE------EEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNL------RLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~------~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+.+++++|+.+|.+||.|..+ .+.. ..+|.++|||||+|.+.++|..|++.||
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 35567899999999999999999999999998764 1111 1378999999999999999999999875
No 165
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=7.6e-16 Score=107.27 Aligned_cols=63 Identities=32% Similarity=0.501 Sum_probs=59.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
+..+|||+|||+.+++++|+++|.+||.|..+.++.+. +|.++|||||+|.+.++|..|+..|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 35699999999999999999999999999999999995 9999999999999999999999987
No 166
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=86.26 Aligned_cols=59 Identities=24% Similarity=0.399 Sum_probs=52.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcc--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKY--GRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+++|.+| |.|..+.+. +|||||+|.+.++|..|++.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHS
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhC
Confidence 3456899999999999999999999999 889888764 5699999999999999999775
No 167
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=1.5e-15 Score=106.46 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+.+++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|..|++.||
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 45699999999999999999999999999999999998899999999999999999999998764
No 168
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=1.4e-15 Score=99.54 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.||
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 3456799999999999999999999999987765 3488999999999999999999999875
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=4.3e-15 Score=96.29 Aligned_cols=62 Identities=26% Similarity=0.509 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 35689999999999999999999999999999999998899999999999999999999997
No 170
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=87.20 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNL-RLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++|||+|||+++++++|+.+|.+||.|..+ .++.++.+| .|||+|.+.++|..|++.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhC
Confidence 346799999999999999999999999999999 488876443 39999999999999999775
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.9e-15 Score=88.22 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAY 119 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al 119 (123)
+.++|||+|||+++++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 4579999999999999999999999999999998765 6899999999999998653
No 172
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=88.37 Aligned_cols=60 Identities=27% Similarity=0.408 Sum_probs=52.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCC-eeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGR-VKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+++|.+||. |..+.+. ++|||||+|.+.++|..|++.||
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHcc
Confidence 345679999999999999999999999999 6655552 36899999999999999999875
No 173
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.56 E-value=1.1e-14 Score=98.46 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCC-CCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLS-HFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~-~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+||| +.+++++|+.+|++||.|.++++++++ +|||||+|.+.++|+.|++.||
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~ln 63 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLN 63 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 456799999999 899999999999999999999998753 7999999999999999999886
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=1.2e-14 Score=85.16 Aligned_cols=59 Identities=19% Similarity=0.399 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKY----G-------RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+++++++|+++|.+| | .|..+.+.++ +|||||+|.+.++|..|+ .||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC
Confidence 346799999999999999999999999 8 8999888754 689999999999999999 765
No 175
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=1.1e-14 Score=85.89 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+| .|..+.+. +++|||||+|.+.++|..|++.||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 61 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC
Confidence 35689999999999999999999999 99998884 468999999999999999999775
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=2.3e-14 Score=93.58 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
-.+|||+||++.+++++|+++|++||.|.++.+..+ .++|||||+|.+.++|..|++.||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHST
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhC
Confidence 357999999999999999999999999999998654 257899999999999999999886
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=9.6e-14 Score=86.99 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=51.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGY-AFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~al~~l~ 123 (123)
..|||+||++.+++++|+.+|++||.|..+.+... .|| |||+|.+.++|..|++.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~Ln 83 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALN 83 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 35789999999999999999999999999988652 276 9999999999999999886
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=3.1e-14 Score=89.80 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=52.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGY-AFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~-~fv~f~~~~~a~~al~~l~ 123 (123)
..|||+||++.+++++|+.+|++||.|.++.+..+. +|+ |||+|.+.++|..|++.||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~Ln 87 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLD 87 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcC
Confidence 478899999999999999999999999999887642 577 9999999999999999886
No 179
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.2e-14 Score=83.92 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=52.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|| ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|..|++.||
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 445689999996 89999999999999999999884 457899999999999999998875
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.6e-15 Score=105.20 Aligned_cols=66 Identities=24% Similarity=0.210 Sum_probs=61.0
Q ss_pred CCCCcEEEEcCCCCCC-cHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFT-SEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~-~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+.+ ++++|+++|++||.|..+.++.++ +|.++|+|||+|.+.++|..|++.||
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 3456799999999995 999999999999999999999987 89999999999999999999999875
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=1.9e-14 Score=97.19 Aligned_cols=64 Identities=6% Similarity=0.145 Sum_probs=58.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCe--eEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRV--KNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i--~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+.+++++|+++|++||.| ..+++..+. +..+|+|||+|.+.++|..|+..||
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~ln 186 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLN 186 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHT
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 456789999999999999999999999998 889988774 5567999999999999999999886
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.53 E-value=1.5e-15 Score=106.78 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHF-TSEDTLRKAMSKYGRVKNLRLVRDIV-TGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~-~~e~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+|||+. +++++|+++|.+||.|..+.++.++. +|.++|||||+|.+.++|..|+ .||
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 445689999999999 99999999999999999999999875 4999999999999999999999 775
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3.8e-14 Score=96.84 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=58.0
Q ss_pred CCCCCCcEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 55 AIGDPHCTVFVGRLSH-FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 55 ~~~~~~~~l~v~~l~~-~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....+.++|||+|||+ .+++++|+++|++||.|..+.+++++ +|||||+|.+.++|..|++.||
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~ 93 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLN 93 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 3456678999999999 99999999999999999999998875 7899999999999999998764
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=5e-14 Score=98.57 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=58.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLR----KAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+ ++|.+||.|..+.+.+ +|+++|||||+|.+.++|..|++.||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~ 73 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQ 73 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 4567899999999999999976 8999999999998875 78899999999999999999998775
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=3.3e-13 Score=82.25 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCCcEEEEcCCCC-----CCcHHHHHHHhhccCCeeEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSH-----FTSEDTLRKAMSKYGRVKNLRLVRDIVT-GASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~-----~~~e~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+++.|++.||.. +-++++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|++.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 4567899999963 2368999999999999999999998654 6889999999999999999999886
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=2.4e-14 Score=100.69 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+.+++++|+++|.+|| .|..+.++.++ .|.++|||||+|.+.++|..|++.||
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~ 180 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLN 180 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 467999999999999999999999999 99999999987 58899999999999999999999765
No 187
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=2e-13 Score=85.11 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|| ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|..|++.||
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 345789999995 69999999999999999999885 457899999999999999998775
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.5e-13 Score=94.83 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCCC---------cHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFT---------SEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~---------~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
....++|||+||+..+ ++++|+.+|++||.|..+.++.+ +|||||+|.+.++|+.|++.|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhC
Confidence 3457899999999998 79999999999999999999864 6999999999999999999875
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=7.8e-14 Score=92.93 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
++.++|||+|||+.+++++|+++|.+|| .|..+.+..+. +|+|||+|.+.++|..|++.||
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhc
Confidence 4578999999999999999999999999 99999986642 6899999999999999999875
No 190
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=5.1e-13 Score=79.47 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=47.7
Q ss_pred CCcE-EEEcCCCCCCcHHH----HHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCT-VFVGRLSHFTSEDT----LRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~-l~v~~l~~~~~e~~----l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+..+ |||+|||+.+++++ |+++|.+|| .|..+ +| |+|||.|.+.++|.+|++.||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~ 67 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRME 67 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhc
Confidence 3445 99999999999987 558999994 99887 34 999999999999999999885
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.44 E-value=4.2e-14 Score=92.39 Aligned_cols=66 Identities=24% Similarity=0.416 Sum_probs=55.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...+.++|||+|||+++++++|+++|.+||.+.. .++.+..+|.++|||||+|.+.++|..|++ ||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~ 74 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 74 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cC
Confidence 3456789999999999999999999999987665 334444578899999999999999999995 53
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.1e-13 Score=97.67 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=55.0
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGR--LSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~--l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++.+|||+| |++.++|++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.||
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 456678999998 588999999999999999999887643 46999999999999999999987
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.43 E-value=7.1e-13 Score=92.71 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=56.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|||||+|.+.++|..|++.||
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~ 265 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQ 265 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcC
Confidence 3456899999999999999999999999999999998654 5899999999999999999876
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=91.34 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 60 HCTVFVGRLSH-FTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 60 ~~~l~v~~l~~-~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++|||+|||+ .+++++|+++|++||.|..+.+++++ +|||||+|.+.++|..|++.||
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 46999999999 99999999999999999999998874 7899999999999999998764
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=2.4e-13 Score=92.86 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccC-CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYG-RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+.++|||+|||+.+++++|+++|.+|| .|..+.++.+ .+|||||+|.+.++|.+|++.||
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~ 210 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLH 210 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHC
Confidence 4468999999999999999999999999 9999998653 36899999999999999999875
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=8.4e-13 Score=91.81 Aligned_cols=61 Identities=25% Similarity=0.499 Sum_probs=55.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..+.++|||+|||+++++++|+.+|++||.|..+.+.++ +|||||+|.+.++|..|+..||
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELD 79 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcC
Confidence 355689999999999999999999999999999988654 6899999999999999998764
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=6.6e-13 Score=80.74 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=50.9
Q ss_pred EcCCCCCCcHHHHHHHh------------hccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 65 VGRLSHFTSEDTLRKAM------------SKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 65 v~~l~~~~~e~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.|||+.+++++|++.| ++||.|..+.+++++ +++++|||||+|.+.++|.+|++.||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHC
Confidence 56788888888777666 999999999999987 58899999999999999999999876
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=4.8e-12 Score=82.17 Aligned_cols=58 Identities=17% Similarity=0.371 Sum_probs=49.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcc----C-------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKY----G-------RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+.++|||+|||+++++++|+++|++| | .|..+.+. .++|||||+|.+.++|..|+ .||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~ 71 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFD 71 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhC
Confidence 45799999999999999999999999 6 56666554 34799999999999999999 554
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-11 Score=74.62 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCCCCcEEEEcCCCCCCc-----------HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHFTS-----------EDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~~~-----------e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
...++++|+|.||..... +++|+++|.+||.|..+.+ .++ .++|||||+|.+.++|..|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 344577999999954432 5899999999999999955 443 379999999999999999999876
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.30 E-value=8.3e-12 Score=75.97 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=55.0
Q ss_pred CCCcEEEEcCC--CCCCc--------HHHHHHHhhccCCeeEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHcC
Q 033266 58 DPHCTVFVGRL--SHFTS--------EDTLRKAMSKYGRVKNLRLVRDIVT--GASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 58 ~~~~~l~v~~l--~~~~~--------e~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+++.|.+.|+ |.+.. +++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 35668888887 33332 3689999999999999999988754 4689999999999999999999886
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.28 E-value=8.7e-12 Score=82.61 Aligned_cols=58 Identities=16% Similarity=0.312 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccC-----------CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYG-----------RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G-----------~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
..++|||+|||+++++++|+++|.+|| .|..+.+ +.++|||||+|.+.++|..|+ .||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~ 71 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFD 71 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-Hhc
Confidence 457999999999999999999999994 4454443 455899999999999999999 554
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=7e-11 Score=71.29 Aligned_cols=48 Identities=33% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 70 HFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 70 ~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|..|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc
Confidence 468999999999999999999987 357899999999999999999864
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=3.3e-11 Score=74.78 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCC--C---CcHHHHHHHhhccCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSH--F---TSEDTLRKAMSKYGRVKNLRLVRDIV----TGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~--~---~~e~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+++.|++.|+-. + --+++|++.|++||.|.++.+++++. ++.++|++||+|.+.++|.+|++.||
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 456899999832 2 23689999999999999999998864 35678999999999999999999886
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=5.5e-11 Score=73.93 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCCCCcEEEEcCCCCC-CcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHF-TSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYET-EREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~-~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~-~~~a~~al~~l~ 123 (123)
.-..++.|||+||++. +++++|+++|++||.|.+|.+.++.. .|||.|.+ ..+|..+++.||
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 3456789999999999 99999999999999999999988752 59999999 899999998874
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.89 E-value=2.9e-09 Score=65.55 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 59 PHCTVFVGRLSHFT----------SEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 59 ~~~~l~v~~l~~~~----------~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+++.|.+.|+=..- -+++|++.|++||.|.++.+.++. ++|++||+|.+.++|.+|++.||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhC
Confidence 35567777762211 136889999999999999987653 58999999999999999999886
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.54 E-value=1.8e-07 Score=63.21 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=45.7
Q ss_pred CcHHHHHHHhhccCCeeEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 72 TSEDTLRKAMSKYGRVKNLRLVRDIV----TGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 72 ~~e~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
-.+++|++.|++||.|.++.++++.. ++.++|++||+|.+.++|.+|++.||
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 45688999999999999999986643 45899999999999999999999886
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=2.1e-07 Score=54.76 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCCCcEEEEcCCCC----CCcH----HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 57 GDPHCTVFVGRLSH----FTSE----DTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 57 ~~~~~~l~v~~l~~----~~~e----~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
+++..+|+|.-.+. .... .+|...|.+||.|..++++.++ +||+|.+.++|.+|++ ||
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cC
Confidence 45566888877652 2323 5789999999999999998873 8999999999999997 64
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=6.6e-07 Score=52.91 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=47.6
Q ss_pred CCCCCcEEEEcCCCCC-----C-cH---HHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 56 IGDPHCTVFVGRLSHF-----T-SE---DTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 56 ~~~~~~~l~v~~l~~~-----~-~e---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.+++..+|+|.-++.. + .+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ ||
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 3566679999887643 2 21 4688999999999999999873 9999999999999998 54
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.91 E-value=0.00014 Score=43.15 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=46.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
.+.+++ ++|.++...+|..+|+.||. ..|+++.|- .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345666 99999999999999999995 457888874 9999999999999988754
No 210
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.68 E-value=9.2e-05 Score=43.98 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=44.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
.+++ ++|.++...+|..+|+.|| -..|+++.|- .||+.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4555 9999999999999999999 4568888874 8999999999999988754
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00061 Score=41.27 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=50.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcc-----CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKY-----GRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
+..++|-+-|||..++++.|+.+...+ |.+..+.+..|. +-|+|+|.+...|.+|.-.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL 82 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMIL 82 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhc
Confidence 345678888999999999999999999 999999888774 58999999999998876444
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.24 E-value=0.0021 Score=37.61 Aligned_cols=62 Identities=8% Similarity=0.161 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHc
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGA--SRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~al~~l 122 (123)
++|.|.+||+..+|+++.+.+.....+....++..+.+.. .-.-||+.|.+.+++....+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~ 65 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRF 65 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Confidence 4789999999999999999999888777666665543332 2356899999988877766543
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0059 Score=36.47 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhc---c--CCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSK---Y--GRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~---~--G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~ 121 (123)
..+|.|.|||+.+.++.|+-+|+. . |.|..+.... +-|+|+|.+...++..|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 468999999999999999999976 2 4566665532 4789999999999988864
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=0.0092 Score=36.57 Aligned_cols=58 Identities=12% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 58 DPHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 58 ~~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...+-|.|-+.|+... ..+-..|.+||.|.+..... ...+-.|.|.++.+|++||...
T Consensus 22 ~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kN 79 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKD 79 (119)
T ss_dssp GGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhC
Confidence 3466888889999964 55666799999999877521 2358899999999999999764
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.57 E-value=0.0015 Score=48.86 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYE 120 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~ 120 (123)
.+.|||. .|..+++.+|.++|++||.|..+.+-.+. | -|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4689997 79999999999999999999998766542 3 699999999998887653
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.79 E-value=0.017 Score=34.15 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=41.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHH
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGA--SRGYAFVEYETEREMRRAYEV 121 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~~fv~f~~~~~a~~al~~ 121 (123)
+-+|.|..||+..||+++.+.+...-.+....++..+.+-. .-.-|||.|.+.++...-.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~ 72 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR 72 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 34799999999999999887776654433322222221211 124689999999888776554
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.45 E-value=0.00048 Score=41.68 Aligned_cols=58 Identities=3% Similarity=-0.005 Sum_probs=15.8
Q ss_pred eeeccccCCcccCCCCCcccCCCChHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEcCCCCCCcHHH
Q 033266 9 VFYAGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLSHFTSEDT 76 (123)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~e~~ 76 (123)
++|.+++..+++..+.|+.|..... . .................+|||+|||+++|++.
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a--------~--~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRF--------K--SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEES--------S--CCCC----------------------------
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEC--------C--CccccccccccccCCCCceEeCCCCCCccccc
Confidence 3455666677787888887742210 0 00001111112233456899999999999764
No 218
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.93 E-value=0.083 Score=31.50 Aligned_cols=57 Identities=4% Similarity=-0.001 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCc-----HHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 60 HCTVFVGRLSHFTS-----EDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 60 ~~~l~v~~l~~~~~-----e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
.++|+|.||+.++- .+.++.+|.+|+.+....+.+. -.-..|.|.+.++|.+|-..|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~L 66 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRL 66 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHh
Confidence 45899999988662 2578999999998887666543 235679999999999887655
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.26 E-value=0.042 Score=34.18 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=40.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeE-EEEeec--------CC----CC-CcccEEEEEecCHHHHHHHHHHc
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKN-LRLVRD--------IV----TG-ASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~-~~~~~~--------~~----~g-~~~g~~fv~f~~~~~a~~al~~l 122 (123)
..|.|-+.|++.... +-..|++||.|.+ ....+. +. .+ ....+-.|.|.++.+|.+||...
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 467777998886654 4556999999876 211110 00 01 13467899999999999999764
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.24 E-value=0.31 Score=36.83 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 60 HCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 60 ~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
...++|+ +|..+...+|.+.|+.||. ..++++.+. .+||.|.+.+.+..++..+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 3456665 8889999999999999995 456776653 8999999999999988765
No 221
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=92.79 E-value=0.0045 Score=36.14 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=28.3
Q ss_pred eeeccccCCcccCCCCCcccCCCChHHHHHHhhccCCCCCCCCCCCCCCCCCcEEEEcCCC
Q 033266 9 VFYAGSYHPIQAGSIDGTDIHPHDNAICRALLCSSAGLYDPLGDPKAIGDPHCTVFVGRLS 69 (123)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 69 (123)
++|.+++..+++..+.|+.+.... +...........+........+||||||+
T Consensus 48 ~~a~~A~~~l~g~~~~g~~l~V~~--------a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 48 RDAEDAVRGLDGKVICGSRVRVEL--------STGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HHHHHHHHHHHHSCSSSCCCEEEE--------SSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred HHHHHHHHHHCCCeECCcEEEEEE--------ccCCCCcccCCCCCccccCCCceecCCCC
Confidence 345556666777778888774221 11111111222222233446789999997
No 222
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=35.49 E-value=13 Score=25.56 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRD 95 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~ 95 (123)
....|+|||+.++..-|..++.....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 35789999999999999999876555666555443
No 223
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.89 E-value=42 Score=22.91 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=26.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRD 95 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~ 95 (123)
..+.|+|+|+.++..-|..++.. +.+....++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 46789999999999999998877 66666555443
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.56 E-value=65 Score=16.41 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHcC
Q 033266 61 CTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVCG 123 (123)
Q Consensus 61 ~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l~ 123 (123)
.++.|.++.=..-...++..+.. ..+..+.+-.. .+-+.|.|.+.+....+++.++
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 46788888877778889999988 88887776443 2456677776666667776543
No 225
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.28 E-value=63 Score=21.66 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEE
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLR 91 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~ 91 (123)
.+.|+|+|+.++...+..++.....+..+.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 578999999999888877776433344433
No 226
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.26 E-value=18 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred EEEcCCCCCCcHHHHHHHhhccCCeeEEEEeec
Q 033266 63 VFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRD 95 (123)
Q Consensus 63 l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~ 95 (123)
..|+|+|+.++...|..++.....+....++..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 379999999999999999886656666555443
No 227
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=27.20 E-value=54 Score=21.90 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=22.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhccCCeeEEEE
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSKYGRVKNLRL 92 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~ 92 (123)
.+.|+|+|+.++..-|..++.....+....+
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~ 127 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVF 127 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEE
Confidence 4789999999999888888875443444333
No 228
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.50 E-value=53 Score=19.21 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred CeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 86 RVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 86 ~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
.|.++-.+. ..+||-|||=.+......|++.+
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTC
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhcc
Confidence 355554432 25899999999999999998754
No 229
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.79 E-value=50 Score=23.64 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=18.3
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc
Q 033266 62 TVFVGRLSHFTSEDTLRKAMSK 83 (123)
Q Consensus 62 ~l~v~~l~~~~~e~~l~~~f~~ 83 (123)
-..|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999998888777763
No 230
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.59 E-value=18 Score=18.68 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=16.8
Q ss_pred EEcCCCCCCcHHHHHHHhhcc
Q 033266 64 FVGRLSHFTSEDTLRKAMSKY 84 (123)
Q Consensus 64 ~v~~l~~~~~e~~l~~~f~~~ 84 (123)
|+.|+|..+....|++.+.+|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 567899999888888877665
No 231
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.36 E-value=1.5e+02 Score=18.64 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=25.7
Q ss_pred CcHHHHHHHhhccCCee---EEEEeecCCCCCcccEEEE
Q 033266 72 TSEDTLRKAMSKYGRVK---NLRLVRDIVTGASRGYAFV 107 (123)
Q Consensus 72 ~~e~~l~~~f~~~G~i~---~~~~~~~~~~g~~~g~~fv 107 (123)
.++++|+++=.+.|.+. +..+..+..+|..+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 37889999888888763 4555666337888888764
No 232
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.84 E-value=1.3e+02 Score=17.24 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhccCCeeEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHc
Q 033266 59 PHCTVFVGRLSHFTSEDTLRKAMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRAYEVC 122 (123)
Q Consensus 59 ~~~~l~v~~l~~~~~e~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~~fv~f~~~~~a~~al~~l 122 (123)
+.+-+-+-|+|..+-..++--.....|---.|..+. |.+.+.|.+.++...|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 456677789999998887766666666656666542 57899999999998888754
Done!