Query 033267
Match_columns 123
No_of_seqs 239 out of 1165
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_U RPL35, 60S ribosomal pr 100.0 5.2E-59 1.8E-63 340.6 13.2 123 1-123 2-124 (124)
2 3u5e_h 60S ribosomal protein L 100.0 3.7E-57 1.2E-61 329.3 12.8 120 1-123 1-120 (120)
3 2zkr_v 60S ribosomal protein L 100.0 4.7E-58 1.6E-62 335.2 8.0 123 1-123 1-123 (123)
4 3iz5_c 60S ribosomal protein L 100.0 1.6E-57 5.5E-62 332.7 5.7 120 3-123 5-124 (124)
5 1vq8_V 50S ribosomal protein L 99.9 4.4E-27 1.5E-31 157.0 7.7 68 1-68 1-68 (71)
6 3j21_W 50S ribosomal protein L 99.9 4.5E-25 1.5E-29 147.7 10.5 71 4-74 1-71 (72)
7 3jyw_X 60S ribosomal protein L 99.9 1.1E-26 3.8E-31 160.4 1.2 72 2-76 1-72 (86)
8 1r73_A TM1492, 50S ribosomal p 99.9 4.2E-25 1.4E-29 145.5 6.7 63 4-67 1-63 (66)
9 3v2d_2 50S ribosomal protein L 99.9 1.5E-24 5.1E-29 145.1 7.0 64 3-67 7-70 (72)
10 2zjr_V 50S ribosomal protein L 99.9 9.4E-25 3.2E-29 144.2 5.9 63 4-67 1-63 (67)
11 3r8s_Y 50S ribosomal protein L 99.9 9.5E-25 3.2E-29 142.6 3.7 61 4-65 1-61 (63)
12 3bbo_Z Ribosomal protein L29; 99.9 8.4E-23 2.9E-27 155.8 5.7 76 1-77 60-137 (173)
13 3twe_A Alpha4H; unknown functi 74.8 3.7 0.00013 21.8 3.1 23 14-36 3-25 (27)
14 3okq_A BUD site selection prot 57.1 50 0.0017 24.0 7.3 52 14-65 23-74 (141)
15 2l5g_A GPS2 protein, G protein 46.3 14 0.00048 21.4 2.2 25 11-35 7-31 (38)
16 3s9g_A Protein hexim1; cyclin 45.8 72 0.0025 22.1 7.5 50 7-59 25-79 (104)
17 2r2v_A GCN4 leucine zipper; co 43.3 32 0.0011 19.4 3.4 27 5-32 2-28 (34)
18 2oa5_A Hypothetical protein BQ 42.5 21 0.00072 25.1 3.1 43 11-53 7-50 (110)
19 2c0s_A Conserved domain protei 35.3 40 0.0014 21.1 3.4 23 12-34 1-23 (64)
20 2hv8_D RAB11 family-interactin 34.5 34 0.0011 21.7 2.9 22 6-27 17-38 (64)
21 1t2k_D Cyclic-AMP-dependent tr 28.4 71 0.0024 19.1 3.6 20 14-33 38-57 (61)
22 3ni0_A Bone marrow stromal ant 28.4 73 0.0025 21.8 4.0 25 14-38 69-93 (99)
23 3viq_B Mating-type switching p 28.2 1.3E+02 0.0045 19.9 6.8 43 14-63 10-52 (85)
24 3zyl_A Phosphatidylinositol-bi 26.5 1.2E+02 0.0039 23.6 5.4 66 8-73 162-230 (271)
25 2xzm_I RPS16E; ribosome, trans 25.5 77 0.0026 22.9 3.9 46 37-84 72-124 (145)
26 3tso_C RAB11 family-interactin 24.3 73 0.0025 20.8 3.2 43 7-61 9-51 (75)
27 2xdj_A Uncharacterized protein 23.4 66 0.0023 21.0 2.9 25 12-36 20-44 (83)
28 3zym_A Phosphatidylinositol-bi 23.3 1.6E+02 0.0054 23.2 5.7 66 8-73 162-230 (310)
29 2jo8_A Serine/threonine-protei 23.0 87 0.003 19.0 3.2 29 6-34 4-36 (51)
30 1ci6_A Transcription factor AT 22.9 87 0.003 19.1 3.3 16 16-31 27-42 (63)
31 1htn_A Tetranectin; plasminoge 22.5 43 0.0015 23.4 2.0 30 5-34 15-44 (182)
32 1zme_C Proline utilization tra 21.7 95 0.0033 18.2 3.3 20 14-33 46-65 (70)
33 3bhp_A UPF0291 protein YNZC; N 21.2 1.4E+02 0.0047 18.6 3.9 21 10-31 20-40 (60)
34 1dd4_C 50S ribosomal protein L 20.3 1E+02 0.0036 17.5 3.0 21 7-27 8-28 (40)
35 1hjb_A Ccaat/enhancer binding 20.3 97 0.0033 20.4 3.3 23 13-35 51-73 (87)
36 2yxy_A Hypothetical conserved 20.0 82 0.0028 22.2 3.0 40 9-55 11-50 (115)
37 1uo4_A General control protein 20.0 1.3E+02 0.0044 16.8 3.3 24 8-32 5-28 (34)
38 3sja_C Golgi to ER traffic pro 20.0 1.8E+02 0.006 18.4 7.2 50 17-66 4-53 (65)
No 1
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=100.00 E-value=5.2e-59 Score=340.59 Aligned_cols=123 Identities=41% Similarity=0.682 Sum_probs=121.5
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033267 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~kk~~p 80 (123)
|+.|+++||+++|.+||.++|++++.|||+||||++|||+++|||+|+.||+|||||+||++|++.+++|+||+|++|+|
T Consensus 2 ~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P 81 (124)
T 4a17_U 2 DKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKP 81 (124)
T ss_dssp CCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CcccCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033267 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 82 ~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~fp~rk~avka 124 (124)
T 4a17_U 82 LDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRKFALKA 124 (124)
T ss_dssp TTTSCCSCHHHHHSCCHHHHHCCCHHHHHHHHHTCCCCCCCCC
T ss_pred cccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 9999999999999999999999999999999999999999997
No 2
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=100.00 E-value=3.7e-57 Score=329.29 Aligned_cols=120 Identities=57% Similarity=0.765 Sum_probs=117.5
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033267 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~kk~~p 80 (123)
|+.|+++||+++|.+||.++|++++.|||+||||++|| ++ ||+|+.||+|||||+||++|++.+++|+||+|++|+|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-ql--~~~Ir~vRR~IARi~Tvl~er~~~~lr~~yk~kk~~p 77 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQP 77 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTS-SC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999 55 9999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033267 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 78 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~avka 120 (120)
T 3u5e_h 78 KDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIKA 120 (120)
T ss_dssp TTTSCCSCHHHHSSCCSHHHHCCCHHHHHHHHHSCCCCEEECC
T ss_pred cccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 9999999999999999999999999999999999999999997
No 3
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.7e-58 Score=335.17 Aligned_cols=123 Identities=63% Similarity=0.942 Sum_probs=60.3
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033267 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~kk~~p 80 (123)
|+.|+++||+++|.+||.++|.+++.|||+||||++|||+++|||+|+.||++||||+||++|++.+++++||+|++|+|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~yk~kk~~p 80 (123)
T 2zkr_v 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKP 80 (123)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999779999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033267 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 81 ~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k~~~~p~rk~a~ka 123 (123)
T 2zkr_v 81 LDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123 (123)
T ss_dssp -------------------------------------------
T ss_pred cccchHHHHHHHHHcCHHHHhhccHHHHHHHHhCchhhhhccC
Confidence 9999999999999999999999999999999999999999997
No 4
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=100.00 E-value=1.6e-57 Score=332.75 Aligned_cols=120 Identities=56% Similarity=0.756 Sum_probs=119.0
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 033267 3 RIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLD 82 (123)
Q Consensus 3 ~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~kk~~p~d 82 (123)
+|+++||+++|.+||.++|++++.|||+||||++|| +++|||+|+.||++||||+||++|++.+++|+||+|++|+|+|
T Consensus 5 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-qlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P~d 83 (124)
T 3iz5_c 5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVAS-SGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLD 83 (124)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSSH
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence 799999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033267 83 LRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 83 lr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 84 lr~kktra~rr~Lt~~e~~~kt~k~~~k~~~~p~rk~avka 124 (124)
T 3iz5_c 84 LRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIKA 124 (124)
T ss_dssp HHHHHCSHHHHHTCSCCHHHHTCSSSCSSCSCCCSHHHHCC
T ss_pred cCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 99999999999999999999999999999999999999997
No 5
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.94 E-value=4.4e-27 Score=156.98 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=63.6
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 033267 1 MARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (123)
Q Consensus 1 M~~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~ 68 (123)
|++|+++|||++|.+||.++|.+++.|||+|||+++|||+++|||+|+.|||+||||+||++|++.++
T Consensus 1 Ma~mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~ 68 (71)
T 1vq8_V 1 MTVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ 68 (71)
T ss_dssp -CCSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999997799999999999999999999999998653
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=4.5e-25 Score=147.66 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=66.5
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033267 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYK 74 (123)
Q Consensus 4 ~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~ 74 (123)
|+++|||++|.+||.++|.+++.|||+||||++||++++|||+|+.+||+||||+||++|++.+..+...+
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~~~~ 71 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKVK 71 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 78999999999999999999999999999999999549999999999999999999999999988776543
No 7
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.92 E-value=1.1e-26 Score=160.37 Aligned_cols=72 Identities=51% Similarity=0.555 Sum_probs=69.1
Q ss_pred CCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 033267 2 ARIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNK 76 (123)
Q Consensus 2 ~~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~k 76 (123)
++||++|||++|.+||.++|.+++.|||+||||++|| ++ ||+|+.|||+||||+||++|++.+++|++|+..
T Consensus 1 ~~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRfq~atg-ql--p~rIr~vRRdIARikTvl~er~~~~lr~~y~~~ 72 (86)
T 3jyw_X 1 AGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQAAAAAAAAAAA 72 (86)
T ss_dssp CCSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTC-CC--HHHHTCCSTTTHHHHTTTTHHHHHHHSSCCCSS
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999 56 999999999999999999999999999999864
No 8
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.91 E-value=4.2e-25 Score=145.48 Aligned_cols=63 Identities=30% Similarity=0.409 Sum_probs=60.6
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 033267 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (123)
Q Consensus 4 ~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~ 67 (123)
|+++|||++|.+||.++|.+++.|||+||||++|| +++|||+|+.|||+||||+||++|++.+
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMG-QLKNTSLIKLTKRDIARIKTILRERELG 63 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHcc-CccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999997 9999999999999999999999999863
No 9
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.91 E-value=1.5e-24 Score=145.11 Aligned_cols=64 Identities=33% Similarity=0.445 Sum_probs=61.3
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 033267 3 RIKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (123)
Q Consensus 3 ~~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~ 67 (123)
.|+++|||++|.+||.++|.+++.|||+||||++|| +++||++|+.|||+||||+||++|++.+
T Consensus 7 ~mK~~elr~~s~eEL~~~L~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 7 RKQLEEARKLSPVELEKLVREKKRELMELRFQASIG-QLSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999999 7899999999999999999999999864
No 10
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.91 E-value=9.4e-25 Score=144.16 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=60.6
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 033267 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (123)
Q Consensus 4 ~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~ 67 (123)
|+++|||++|.+||.++|.+++.|||+|||+++|| +++|||+|+.|||+||||+||++|++.+
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAG-QLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999997 8999999999999999999999998764
No 11
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.90 E-value=9.5e-25 Score=142.63 Aligned_cols=61 Identities=33% Similarity=0.406 Sum_probs=59.2
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033267 4 IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65 (123)
Q Consensus 4 ~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~ 65 (123)
||++|||++|.+||.++|.+++.|||+|||+++|| +++||++|+.|||+||||+||++|++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~ 61 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASG-QLQQSHLLKQVRRDVARVKTLLNEKA 61 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHHHHHTT-CCSCGGGTHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999998 89999999999999999999999875
No 12
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.87 E-value=8.4e-23 Score=155.83 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=61.6
Q ss_pred CCC--CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 033267 1 MAR--IKVHELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKK 77 (123)
Q Consensus 1 M~~--~Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~~~lr~~y~~kk 77 (123)
|++ +++.|||++|.+||.++|.+|+.|||+||||++|| +++||++|+.|||+||||+||++|+++++.-..+...+
T Consensus 60 MAK~~~Ka~ELR~lS~eEL~ekL~eLKkELFnLRfQkATG-QLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk 137 (173)
T 3bbo_Z 60 MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSAR-NEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRK 137 (173)
T ss_dssp --CCSSCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred cccccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 566 89999999999999999999999999999999999 69999999999999999999999999877655544443
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=74.79 E-value=3.7 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033267 14 KVDLLNQLKELKAELALLRVAKV 36 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~qk~ 36 (123)
.+||-++|++|...|-.||-.--
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999998888886543
No 14
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=57.08 E-value=50 Score=23.99 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 033267 14 KVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~ 65 (123)
.+.|...+++|..-.-.||-.-+..|.-+.|..+..|.++|..+-+-|+.-+
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~ 74 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQ 74 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888777888888888788999999999999999999887654
No 15
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.31 E-value=14 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=19.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 033267 11 QKSKVDLLNQLKELKAELALLRVAK 35 (123)
Q Consensus 11 ~~s~eEL~~qL~eLk~EL~~LR~qk 35 (123)
.||.+|..+|+..+..+|.+|+-.+
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887544
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=45.85 E-value=72 Score=22.06 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHcCCCCcchhhHHHHHHHHHHHH
Q 033267 7 HELRQKSKVDLLNQLKELKAELALL-----RVAKVTGGAPNKLSKIKVVRLSIAQVLT 59 (123)
Q Consensus 7 ~eLR~~s~eEL~~qL~eLk~EL~~L-----R~qk~tgg~~~k~~kIr~vRK~IARilT 59 (123)
.-|.+||++||..+-.+|...+.++ |++.... . -.++|+.+=-.|-|+-+
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~-~--~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESK-R--LDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--chhhHHHHHHHHHHHHH
Confidence 4588999999999999999999887 5555533 1 14788888888877654
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=43.31 E-value=32 Score=19.36 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=18.7
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 033267 5 KVHELRQKSKVDLLNQLKELKAELALLR 32 (123)
Q Consensus 5 Ka~eLR~~s~eEL~~qL~eLk~EL~~LR 32 (123)
+.+.|-++ .|||..+..++..|+..|+
T Consensus 2 RMnQledK-vEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADK-LEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 34555553 7888888888888877654
No 18
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=42.46 E-value=21 Score=25.05 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CcchhhHHHHHH
Q 033267 11 QKSKVDLLNQLKELKAELALLRVAKVTGGAP-NKLSKIKVVRLS 53 (123)
Q Consensus 11 ~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~-~k~~kIr~vRK~ 53 (123)
++|.|||.++|..|+-|=..|+-+-..||+. +++.-+..--|+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKe 50 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRE 50 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHH
Confidence 7899999999999999999998765443344 445555444443
No 19
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=35.30 E-value=40 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 033267 12 KSKVDLLNQLKELKAELALLRVA 34 (123)
Q Consensus 12 ~s~eEL~~qL~eLk~EL~~LR~q 34 (123)
|..++|..+|++.+.+|..+-..
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k 23 (64)
T 2c0s_A 1 MNVTKLNDRIEAKKKELIYLVEK 23 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999743
No 20
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=34.54 E-value=34 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=16.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHHH
Q 033267 6 VHELRQKSKVDLLNQLKELKAE 27 (123)
Q Consensus 6 a~eLR~~s~eEL~~qL~eLk~E 27 (123)
+.++-++|.+||.+.+.+.+..
T Consensus 17 Aae~~~~s~deL~~~l~eqee~ 38 (64)
T 2hv8_D 17 AAEISSVSRDELMEAIQKQEEI 38 (64)
T ss_dssp HTTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3567889999999888765543
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.42 E-value=71 Score=19.14 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033267 14 KVDLLNQLKELKAELALLRV 33 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~ 33 (123)
.++|..++..|+.|+..|+.
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654
No 22
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.41 E-value=73 Score=21.85 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 033267 14 KVDLLNQLKELKAELALLRVAKVTG 38 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~qk~tg 38 (123)
.+||..+|..|..+|-+.+.++-++
T Consensus 69 v~elqgEI~~Lnq~Lqda~~~~~~~ 93 (99)
T 3ni0_A 69 IKELENEVTKLNQELENLRIQKETS 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999876
No 23
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.19 E-value=1.3e+02 Score=19.90 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHH
Q 033267 14 KVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~e 63 (123)
.++|..++..|..++..++- .+.++.--..+.+.|..+. ..|+
T Consensus 10 i~~L~~q~~~L~~ei~~~~a------~L~~~~~~~~~~~hI~~Lh-~YNe 52 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALA------KLKNRDAKQTVQKHIDLLH-TYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TCSSSCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HhccCCHHHHHHHHHHHHH-HHhH
Confidence 45555555555555555432 3444444556677776543 3444
No 24
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=26.48 E-value=1.2e+02 Score=23.61 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033267 8 ELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIK---VVRLSIAQVLTVISQKQKAALREAY 73 (123)
Q Consensus 8 eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr---~vRK~IARilTVl~ek~~~~lr~~y 73 (123)
-+++++.++|.+++..+...|+.|=--..+|+..+|.-.+- -+=++.=.|...+|+--..-+..||
T Consensus 162 ~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ff 230 (271)
T 3zyl_A 162 VMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230 (271)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999998887643344454555544433 3346777788888886666666665
No 25
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=25.47 E-value=77 Score=22.93 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=34.8
Q ss_pred HcCCCCcchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHh--CCCCCCCCCC
Q 033267 37 TGGAPNKLSKIKVVRLSIAQVLTVI-----SQKQKAALREAYK--NKKFLPLDLR 84 (123)
Q Consensus 37 tgg~~~k~~kIr~vRK~IARilTVl-----~ek~~~~lr~~y~--~kk~~p~dlr 84 (123)
.||- -.++...+|-.|||.|..+ ++..+..|++.|. +..++--|-|
T Consensus 72 ~GGG--~sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R 124 (145)
T 2xzm_I 72 RGSG--YTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPR 124 (145)
T ss_dssp CCSS--HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCC
T ss_pred EcCC--eecHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCc
Confidence 4543 4589999999999999999 7777888888865 3355655655
No 26
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=24.30 E-value=73 Score=20.83 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHH
Q 033267 7 HELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61 (123)
Q Consensus 7 ~eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl 61 (123)
....++|.+||.+.+..++.+|..- -.+|+.+---|-.+|--+
T Consensus 9 a~y~~ltreELi~l~lk~~~~l~~k------------~~~v~eLEdYID~LLvRV 51 (75)
T 3tso_C 9 AGYRSLTYEEVLQELVKHKELLRRK------------DTHIRELEDYIDNLLVRV 51 (75)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999887653 234555555555555433
No 27
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=23.43 E-value=66 Score=21.04 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 033267 12 KSKVDLLNQLKELKAELALLRVAKV 36 (123)
Q Consensus 12 ~s~eEL~~qL~eLk~EL~~LR~qk~ 36 (123)
-+.-||..+|++++.|+..||-+--
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3567899999999999999986543
No 28
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=23.26 E-value=1.6e+02 Score=23.21 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=41.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 033267 8 ELRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKV---VRLSIAQVLTVISQKQKAALREAY 73 (123)
Q Consensus 8 eLR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~---vRK~IARilTVl~ek~~~~lr~~y 73 (123)
-+++++.++|..++..+...++.|=--..+|+..+|.-.+-. +=++.=.|...+|+--..-+..||
T Consensus 162 ~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ff 230 (310)
T 3zym_A 162 VMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230 (310)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999988877432334444555444433 335666666667664444444443
No 29
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.01 E-value=87 Score=18.99 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=19.1
Q ss_pred hHHHhcCCHHHHHHHHHHHHH----HHHHHHHH
Q 033267 6 VHELRQKSKVDLLNQLKELKA----ELALLRVA 34 (123)
Q Consensus 6 a~eLR~~s~eEL~~qL~eLk~----EL~~LR~q 34 (123)
..-|.++|.+||...+..|-. |+-.||..
T Consensus 4 f~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~R 36 (51)
T 2jo8_A 4 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQK 36 (51)
T ss_dssp CGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhCCHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 344788999999988866544 44444443
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.85 E-value=87 Score=19.11 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 033267 16 DLLNQLKELKAELALL 31 (123)
Q Consensus 16 EL~~qL~eLk~EL~~L 31 (123)
+|..++.+|..+=..|
T Consensus 27 ~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 27 ALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 31
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=22.52 E-value=43 Score=23.40 Aligned_cols=30 Identities=30% Similarity=0.339 Sum_probs=15.7
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 033267 5 KVHELRQKSKVDLLNQLKELKAELALLRVA 34 (123)
Q Consensus 5 Ka~eLR~~s~eEL~~qL~eLk~EL~~LR~q 34 (123)
+..+-.....++|..+|+.|..+|..|.-.
T Consensus 15 ~~~~~~~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 15 KKDVVNTKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp ------------CHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566889999999999999888754
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.74 E-value=95 Score=18.20 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033267 14 KVDLLNQLKELKAELALLRV 33 (123)
Q Consensus 14 ~eEL~~qL~eLk~EL~~LR~ 33 (123)
.++|..++.+|...|..|+-
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888899999888888764
No 33
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=21.18 E-value=1.4e+02 Score=18.60 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=16.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHH
Q 033267 10 RQKSKVDLLNQLKELKAELALL 31 (123)
Q Consensus 10 R~~s~eEL~~qL~eLk~EL~~L 31 (123)
.++|.+|..+| ..|++|+.+-
T Consensus 20 ~gLT~eEk~EQ-~~LR~eYl~~ 40 (60)
T 3bhp_A 20 GVITEEEKAEQ-QKLRQEYLKG 40 (60)
T ss_dssp TCCCHHHHHHH-HHHHHHHHHH
T ss_pred cCCCHHHHHHH-HHHHHHHHHH
Confidence 68889998887 7788887654
No 34
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.33 E-value=1e+02 Score=17.49 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 033267 7 HELRQKSKVDLLNQLKELKAE 27 (123)
Q Consensus 7 ~eLR~~s~eEL~~qL~eLk~E 27 (123)
.+|.+||.-|+.+....++.+
T Consensus 8 e~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 8 EAIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHH
Confidence 568899998888888777765
No 35
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.26 E-value=97 Score=20.44 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 033267 13 SKVDLLNQLKELKAELALLRVAK 35 (123)
Q Consensus 13 s~eEL~~qL~eLk~EL~~LR~qk 35 (123)
..+.|..+++.|+.|+..|+---
T Consensus 51 EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 51 ENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776443
No 36
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=20.05 E-value=82 Score=22.16 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHH
Q 033267 9 LRQKSKVDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIA 55 (123)
Q Consensus 9 LR~~s~eEL~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IA 55 (123)
..+||.+||..++..|+.+--.-. -.| ..+.+-++.+.|+
T Consensus 11 ySeMS~~EL~~EI~~L~ekarKAE---q~G----~~nE~aV~erK~~ 50 (115)
T 2yxy_A 11 YSEMTKEELQQEIAMLTEKARKAE---QMG----MVNEYAVYERKIA 50 (115)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH---HHT----CHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHH---HcC----CccHHHHHHHHHH
Confidence 568999999999999987643322 223 3455555555443
No 37
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=20.05 E-value=1.3e+02 Score=16.83 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=17.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH
Q 033267 8 ELRQKSKVDLLNQLKELKAELALLR 32 (123)
Q Consensus 8 eLR~~s~eEL~~qL~eLk~EL~~LR 32 (123)
.|-++ .|||.....+|..|...|+
T Consensus 5 QLEdK-VEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDK-GEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhHHHHHHHHHHH
Confidence 34443 6788888888888887765
No 38
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=20.01 E-value=1.8e+02 Score=18.39 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 033267 17 LLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQK 66 (123)
Q Consensus 17 L~~qL~eLk~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARilTVl~ek~~ 66 (123)
+..+...|+.|+..|+-....-.+-+..++--.++|.+-.+..-|.....
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888887766554778999999999999999988776543
Done!