BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033269
MQKLDYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVE
PLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPFCYFQ
KTK

High Scoring Gene Products

Symbol, full name Information P value
CHY_0542
Putative Holliday junction resolvase
protein from Carboxydothermus hydrogenoformans Z-2901 0.00021
CHY_0542
conserved hypothetical protein TIGR00250
protein from Carboxydothermus hydrogenoformans Z-2901 0.00021

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033269
        (123 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q3AEN4 - symbol:CHY_0542 "Putative Holliday jun...    90  0.00021   1
TIGR_CMR|CHY_0542 - symbol:CHY_0542 "conserved hypothetic...    90  0.00021   1


>UNIPROTKB|Q3AEN4 [details] [associations]
            symbol:CHY_0542 "Putative Holliday junction resolvase"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR005227 InterPro:IPR006641
            InterPro:IPR012337 Pfam:PF03652 SMART:SM00732 GO:GO:0005737
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006281 GO:GO:0003676
            GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004518
            eggNOG:COG0816 HOGENOM:HOG000016953 KO:K07447 Gene3D:3.30.420.140
            HAMAP:MF_00651 TIGRFAMs:TIGR00250 OMA:KNMNGTV RefSeq:YP_359400.1
            ProteinModelPortal:Q3AEN4 STRING:Q3AEN4 GeneID:3727317
            KEGG:chy:CHY_0542 PATRIC:21274231
            BioCyc:CHYD246194:GJCN-543-MONOMER Uniprot:Q3AEN4
        Length = 138

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:    37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK 92
             +LGLDVG+K IGV+L    G   + LT   R   K D +E+ ++I+ H V  +V+  P+
Sbjct:     3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61


>TIGR_CMR|CHY_0542 [details] [associations]
            symbol:CHY_0542 "conserved hypothetical protein TIGR00250"
            species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR005227 InterPro:IPR006641
            InterPro:IPR012337 Pfam:PF03652 SMART:SM00732 GO:GO:0005737
            EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006281 GO:GO:0003676
            GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004518
            eggNOG:COG0816 HOGENOM:HOG000016953 KO:K07447 Gene3D:3.30.420.140
            HAMAP:MF_00651 TIGRFAMs:TIGR00250 OMA:KNMNGTV RefSeq:YP_359400.1
            ProteinModelPortal:Q3AEN4 STRING:Q3AEN4 GeneID:3727317
            KEGG:chy:CHY_0542 PATRIC:21274231
            BioCyc:CHYD246194:GJCN-543-MONOMER Uniprot:Q3AEN4
        Length = 138

 Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:    37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK 92
             +LGLDVG+K IGV+L    G   + LT   R   K D +E+ ++I+ H V  +V+  P+
Sbjct:     3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.142   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 22  0.36    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  127 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.42u 0.17s 12.59t   Elapsed:  00:00:01
  Total cpu time:  12.42u 0.17s 12.59t   Elapsed:  00:00:01
  Start:  Fri May 10 21:11:58 2013   End:  Fri May 10 21:11:59 2013

Back to top