BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033269
(123 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 13/93 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFD---RAKADQELPQLIEKHKVLGMVVNMP-- 91
+LGLDVG++ IGV+L G PLT + R++A + +L+ +H+V G+VV +P
Sbjct: 6 LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGLPLT 65
Query: 92 -----KEHHEHVSSFIEQLDGNEIYRGLPFCYF 119
E SF ++L E GLP F
Sbjct: 66 LRGEIGPQAEQTRSFAQEL---ERQVGLPVMLF 95
>gi|357486677|ref|XP_003613626.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
gi|355514961|gb|AES96584.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
Length = 179
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 5 DYNHLVRLIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPL-- 62
DY + ++P L+ QCV + ++G++VG +Y+GV++ +E
Sbjct: 30 DYTAMKYMLPKQLY--------QCVCKALPGRVMGINVGTEYLGVAMSDLENKGLEDSRT 81
Query: 63 ------TKFDRAKAD----QELPQLIEKHKVLGMVV----------NMPKEHHEHVSSFI 102
K + K+D EL LI+++ V GMV+ +P E F+
Sbjct: 82 SLLRLNDKSGKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFV 141
Query: 103 EQLDGNEIYRGLPFCYF 119
++LD +++ + + YF
Sbjct: 142 QKLDKTDMFSDMNYTYF 158
>gi|345023313|ref|ZP_08786926.1| hypothetical protein OTW25_18723 [Ornithinibacillus scapharcae
TW25]
Length = 137
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLT--KFDRA---KADQELPQLIEKHKVLGMVVNMP 91
ILGLDVG+K IGV++ G + +T K+D AD EL Q+I++H + +++ +P
Sbjct: 3 ILGLDVGSKTIGVAISDELGWTAQGITTIKWDETDIKSADSELKQIIDEHNIEKVIIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|302398811|gb|ADL36700.1| GRF domain class transcription factor [Malus x domestica]
Length = 170
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+GV++ H PL+ R K++ + LI + ++G +V P
Sbjct: 24 LLGLDVGDKYVGVAVSDLHNKIASPLSVLLRKKSNIGLMAADFQSLISELSLVGFIVGYP 83
Query: 92 KEHHE------HVSSFIEQLDGNEIYRGLPFCYFQK 121
+ + V FI+ L GL + Y+ +
Sbjct: 84 FDRQKGTPDAVQVKLFIDDLSKTRKLEGLKYTYWDE 119
>gi|7635496|emb|CAB88667.1| hypothetical 19.6 kDa protein [Cicer arietinum]
Length = 171
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
++GLDVG+KY+G++L P + R K + + L+ K+ + G V+ +P
Sbjct: 24 LIGLDVGDKYVGLALSDFDNKIASPFSVLVRKKTNINLMAADFKSLVSKYSLKGFVIGLP 83
Query: 92 KEHH------EHVSSFIEQLDGNEIYRGLPFCYFQK 121
+ H V FI+ L ++ GL + Y+ +
Sbjct: 84 FDRHLVSSDAVKVKVFIDNLRRTNMFDGLKYTYWNE 119
>gi|255537457|ref|XP_002509795.1| conserved hypothetical protein [Ricinus communis]
gi|223549694|gb|EEF51182.1| conserved hypothetical protein [Ricinus communis]
Length = 168
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ RH PL+ R K++ +L LI + + G VV P
Sbjct: 22 LLGLDVGDKYVGLAISDRHNKIASPLSVLLRKKSNIDLVATDFQSLISELSLAGFVVGYP 81
Query: 92 KEHHE------HVSSFIEQLDGNEIYRGLPFCYFQK 121
+ HV FI+ L GL + ++ +
Sbjct: 82 FDRQRSTPDALHVKLFIDDLRKIGKLEGLKYTFWDE 117
>gi|388518895|gb|AFK47509.1| unknown [Medicago truncatula]
Length = 171
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP 91
++GLDVG+KY+G++L P + R K++ L LI K+ + G+V+ +P
Sbjct: 24 LMGLDVGDKYVGLALSDFDNKVASPFSVLVRKKSNASLMAADFKSLISKYSLKGLVIGVP 83
Query: 92 KEHH------EHVSSFIEQLDGNEIYRGLPFCYF 119
E++ V I+ L + GL + Y+
Sbjct: 84 FEYNLVSPDAVQVKVLIDNLRRTNMLEGLKYTYW 117
>gi|402298197|ref|ZP_10817907.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
gi|401726600|gb|EJS99821.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
Length = 138
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 13/85 (15%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMPK 92
LGLDVG K IGV+L G + L R++ D + + +L+++H+V +VV +PK
Sbjct: 4 LGLDVGTKTIGVALSDELGWTAQGLVTLKRSEDDLQSDIKSVSELVQEHEVTAIVVGLPK 63
Query: 93 EHH-------EHVSSFIEQLDGNEI 110
+ E +F +QL+ NEI
Sbjct: 64 NMNGTIGPSGEMCQAFAKQLE-NEI 87
>gi|357481619|ref|XP_003611095.1| Hypothetical protein MTR_5g010310 [Medicago truncatula]
gi|355512430|gb|AES94053.1| Hypothetical protein MTR_5g010310 [Medicago truncatula]
Length = 176
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP 91
++GLDVG+KY+G++L P + R K++ L LI K+ + G+V+ +P
Sbjct: 29 LMGLDVGDKYVGLALSDFDNKVASPFSVLVRKKSNASLMAADFKSLISKYSLKGLVIGVP 88
Query: 92 KEHH------EHVSSFIEQLDGNEIYRGLPFCYFQK 121
E++ V I+ L + GL + Y+ +
Sbjct: 89 FEYNLVSPDAVQVKVLIDNLRRTNMLEGLKYTYWNE 124
>gi|357486681|ref|XP_003613628.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
gi|355514963|gb|AES96586.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
gi|388518327|gb|AFK47225.1| unknown [Medicago truncatula]
Length = 146
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 30/130 (23%)
Query: 12 LIPSHLFKFCGRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPL--------T 63
++P L+ QCV + ++G++VG +Y+GV++ +E
Sbjct: 4 MLPKQLY--------QCVCKALPGRVMGINVGTEYLGVAMSDLENKGLEDSRTSLLRLND 55
Query: 64 KFDRAKAD----QELPQLIEKHKVLGMVV----------NMPKEHHEHVSSFIEQLDGNE 109
K + K+D EL LI+++ V GMV+ +P E F+++LD +
Sbjct: 56 KSGKPKSDAVLASELKDLIDRNNVKGMVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTD 115
Query: 110 IYRGLPFCYF 119
++ + + YF
Sbjct: 116 MFSDMNYTYF 125
>gi|290968330|ref|ZP_06559871.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
gi|290781605|gb|EFD94192.1| RNAse YqgF [Megasphaera genomosp. type_1 str. 28L]
Length = 143
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G+K IGV+ G + +T R A Q L L + +V MVV P+
Sbjct: 5 ILGLDIGSKTIGVACSDALGITAQGITTIQRKTAQDDWQRLQALATERRVTRMVVGRPRH 64
Query: 94 HHEHVSSFIEQLDGNEIY--RGLP---FCYF 119
+ S ++Q++ Y R +P F Y+
Sbjct: 65 MNGEDSENVKQIEAFITYLKRQMPAMEFVYW 95
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G+K+IGV++ G +PL R +A +++ LI+++ + +VV +PK
Sbjct: 8 ILGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGLPKN 67
Query: 94 -------HHEHVSSFIEQL 105
E V F E+L
Sbjct: 68 MNNTLGPQSEKVLKFSEKL 86
>gi|403070212|ref|ZP_10911544.1| hypothetical protein ONdio_11577 [Oceanobacillus sp. Ndiop]
Length = 127
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK-----ADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K IGV++ G + LT + + AD EL +IE H++ +V P
Sbjct: 3 IIGLDVGSKTIGVAVSDAFGWTAQGLTTINWDENEIDSADAELKSIIETHEIGKAIVGFP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|145332817|ref|NP_001078274.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
gi|26449955|dbj|BAC42098.1| unknown protein [Arabidopsis thaliana]
gi|332645487|gb|AEE79008.1| Polynucleotidyl transferase/ ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 170
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP- 91
LGLDVG+KY+G+++ PL+ R K++ +L L++ V G+VV P
Sbjct: 25 LGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPF 84
Query: 92 -----KEHHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
E V+ FIE+L E + + + Y+ +
Sbjct: 85 GKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDE 119
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1.1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPKE 93
ILG+DVGNK IGV+L G + +T R ++ EL +L EK++V +V +PK
Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62
Query: 94 -------HHEHVSSFIEQLDGN 108
E V F E + N
Sbjct: 63 MNGTIGFQSEKVLGFCEVIKQN 84
>gi|219362555|ref|NP_001136992.1| hypothetical protein [Zea mays]
gi|194697900|gb|ACF83034.1| unknown [Zea mays]
gi|414880350|tpg|DAA57481.1| TPA: hypothetical protein ZEAMMB73_010877 [Zea mays]
Length = 174
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 30 GENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVL 84
+N +LGLDVG+KY+GV++ PL+ R K + + L+ + +
Sbjct: 18 SKNKAARLLGLDVGSKYVGVAISDEKNRVAMPLSVLCRTKTNINLMADDFKTLVSMYSIA 77
Query: 85 GMVVNMP-KEHHEHVSSFIEQLDGNEIYRG-----LPFCYFQK 121
G VV P K + + +S I+ E+ + LP+ Y+ +
Sbjct: 78 GFVVGYPFKIYGQPCASAIQVSLAGELCKTGKLDDLPYAYWDE 120
>gi|337736898|ref|YP_004636345.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
gi|384458405|ref|YP_005670825.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|336291906|gb|AEI33040.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
Length = 135
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPKE 93
ILG+DVGNK IGV+L G + +T R ++ EL +L EK++V +V +PK
Sbjct: 3 ILGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKN 62
Query: 94 -------HHEHVSSFIEQLDGN 108
E V F E + N
Sbjct: 63 MNGTIGFQSEKVLGFCEVIKQN 84
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri
DSM 555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7.1|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198.1|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 41.2 bits (95), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPKE 93
ILGLD+GNK IGV+L G + +T R D +EL + +K+KV +V +PK
Sbjct: 3 ILGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPKN 62
Query: 94 HH 95
+
Sbjct: 63 MN 64
>gi|89054672|ref|YP_510123.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
gi|88864221|gb|ABD55098.1| Holliday junction resolvase YqgF [Jannaschia sp. CCS1]
Length = 145
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQELPQLIEKHKVLGMVVNMP 91
G++GLD+G K IGV+L R L R K AD L LI KH+V G+++ +P
Sbjct: 3 GLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADA-LAGLIAKHEVGGIILGLP 61
Query: 92 K 92
+
Sbjct: 62 R 62
>gi|222151503|ref|YP_002560659.1| hypothetical protein MCCL_1256 [Macrococcus caseolyticus
JCSC5402]
gi|222120628|dbj|BAH17963.1| conserved hypothetical protein [Macrococcus caseolyticus
JCSC5402]
Length = 139
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLT--KFDRAKAD---QELPQLIEKHKVLGMVVNMPK 92
+GLDVG+K IGV+L G + LT + D A D + L ++IE + V V+ +PK
Sbjct: 5 IGLDVGSKTIGVALSDAMGWTAQGLTTLRIDEANEDYGIEALKEIIETNNVTTAVIGLPK 64
Query: 93 EHHEHV 98
+ +
Sbjct: 65 NMNNTI 70
>gi|404370847|ref|ZP_10976164.1| putative Holliday junction resolvase [Clostridium sp. 7_2_43FAA]
gi|226913029|gb|EEH98230.1| putative Holliday junction resolvase [Clostridium sp. 7_2_43FAA]
Length = 138
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPK 92
ILGLDVG+K IGV++ G + +T R+K +Q E+ +L +++ V +V+ +PK
Sbjct: 3 ILGLDVGSKTIGVAISDPLGWTAQGITTIRRSKKEQDIEEIKKLCKEYSVETIVIGLPK 61
>gi|33865313|ref|NP_896872.1| hypothetical protein SYNW0779 [Synechococcus sp. WH 8102]
gi|62901007|sp|Q7U845.1|RUVX_SYNPX RecName: Full=Putative Holliday junction resolvase
gi|33632482|emb|CAE07294.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 157
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELP---QLIEKHKVLGMVVNMP 91
+L LDVG K IG++ G V P+ R + D +LP QL + +V G+VV +P
Sbjct: 7 VLSLDVGRKRIGLAGCDPLGITVTPIKALHRGRFDDDLPVLQQLCQDRRVQGLVVGLP 64
>gi|118597211|sp|Q28QB4.2|RUVX_JANSC RecName: Full=Putative Holliday junction resolvase
Length = 160
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQELPQLIEKHKVLGMVVNMP 91
G++GLD+G K IGV+L R L R K AD L LI KH+V G+++ +P
Sbjct: 18 GLIGLDLGTKTIGVALSDRLLTSASALETVKRKKFGVDADA-LAGLIAKHEVGGIILGLP 76
Query: 92 K 92
+
Sbjct: 77 R 77
>gi|335050194|ref|ZP_08543168.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 199-6]
gi|333757525|gb|EGL35085.1| RNAse H domain protein, YqgF family [Megasphaera sp. UPII 199-6]
Length = 143
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR--AKAD-QELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G+K IGV+ G + +T R AK D Q L L + V MVV P+
Sbjct: 5 ILGLDIGSKTIGVACSDALGITAQGITTIQRKTAKDDWQRLQALATERWVTRMVVGRPRH 64
Query: 94 HHEHVSSFIEQLDGNEIY--RGLP---FCYF 119
+ S ++Q++ Y R +P F Y+
Sbjct: 65 MNGEDSENVKQIEAFITYLKRQMPAMEFVYW 95
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLI---EKHKVLGMVVNMPKE 93
+LGLDVGNK IGV++ G + +T +R ++ ++ ++ V +VV +PK
Sbjct: 3 VLGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPKN 62
Query: 94 -------HHEHVSSFIEQLDGN 108
E V +F+E+L N
Sbjct: 63 MNGTLGPQSEKVMAFVEKLKKN 84
>gi|410668022|ref|YP_006920393.1| holliday junction resolvase [Thermacetogenium phaeum DSM 12270]
gi|409105769|gb|AFV11894.1| holliday junction resolvase [Thermacetogenium phaeum DSM 12270]
Length = 142
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELP---QLIEKHKVLGMVVNMPK- 92
+LG+D+G K IG+++ G + L +R A+ +L L+ ++ V +V+ P+
Sbjct: 3 VLGIDMGQKRIGIAISDEMGITAQALKTLERIGAEADLEAICSLVREYGVTEIVIGYPRN 62
Query: 93 ------EHHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
H E ++F +L G+P C++ +
Sbjct: 63 LNGTPGRHAEEYAAFGRELQKKS---GVPVCFWDE 94
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola potens JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
+LGLDVG K IGV++ + LT + + ELP++IE+ +V +VV +PK
Sbjct: 3 VLGLDVGTKRIGVAVSDPLRLTAQGLTVIKKGEELTELPRIIEQMEVSEIVVGLPK 58
>gi|282882848|ref|ZP_06291453.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300814171|ref|ZP_07094454.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|281297259|gb|EFA89750.1| putative Holliday junction resolvase [Peptoniphilus lacrimalis
315-B]
gi|300511828|gb|EFK39045.1| RNAse YqgF [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 147
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA---KADQELPQLIEKHKVLGMVVNMPKE 93
+LGLDVG K+IGV++ PL +R +A ++ LIEK+ V +VV +PK
Sbjct: 4 VLGLDVGEKWIGVAISDETFTIATPLETIERTSNKEAYDKIHDLIEKYDVKKIVVGLPKN 63
Query: 94 HH-------EHVSSFIEQL 105
+ + V F E+L
Sbjct: 64 MNNTLGPTCQMVQKFSEKL 82
>gi|15613832|ref|NP_242135.1| hypothetical protein BH1269 [Bacillus halodurans C-125]
gi|32130069|sp|Q9KDE4.1|RUVX_BACHD RecName: Full=Putative Holliday junction resolvase
gi|10173885|dbj|BAB04988.1| BH1269 [Bacillus halodurans C-125]
Length = 140
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE-----LPQLIEKHKVLGMVVNMPK 92
LGLDVG K IG+++ G + L + R+ A+++ + L+++H+V +V+ +PK
Sbjct: 4 LGLDVGTKTIGIAVSDALGWTAQGLETWRRSDANEQADFEHIASLVKEHEVTTIVIGLPK 63
>gi|408356433|ref|YP_006844964.1| Holliday junction resolvase [Amphibacillus xylanus NBRC 15112]
gi|407727204|dbj|BAM47202.1| putative Holliday junction resolvase [Amphibacillus xylanus NBRC
15112]
Length = 138
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKF-----DRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K IGV++ G + LT D A+Q + +I +++V +V+ +P
Sbjct: 3 VMGLDVGSKTIGVAISDAFGWTAQGLTTLKWNENDFTTANQSIAAIISEYEVSEIVIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|334341673|ref|YP_004546653.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
gi|334093027|gb|AEG61367.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
Length = 138
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE----LPQLIEKHKVLGMVVNMPK 92
I+GLDVG+K IGV+L G + L R QE L ++I ++ V ++V +PK
Sbjct: 3 IMGLDVGDKTIGVALSDPMGWTAQGLEVIRRKNDIQEDFQRLLEIIREYGVESILVGLPK 62
Query: 93 EHH-------EHVSSFIEQL 105
+ E V +F+EQL
Sbjct: 63 NMNGTIGPQGEKVQAFVEQL 82
>gi|23099462|ref|NP_692928.1| hypothetical protein OB2007 [Oceanobacillus iheyensis HTE831]
gi|32130032|sp|Q8EPT1.1|RUVX_OCEIH RecName: Full=Putative Holliday junction resolvase
gi|22777691|dbj|BAC13963.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 137
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K IGV++ + G + + D + AD+EL ++I +H++ ++ +P
Sbjct: 3 IIGLDVGSKTIGVAVSDALGWTAQGVKTIRWDENDLSSADEELEKIISEHEIGKAIIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|310658791|ref|YP_003936512.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
Length = 139
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEP---LTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
ILGLD+G+K IG+++ G +P LT+ +A E+ ++I+K + +VV +PK
Sbjct: 4 ILGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGLPK 62
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7.1|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG K IGV+L G + LT R A L +L+ ++ V +VV +P+
Sbjct: 3 IMGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRN 62
Query: 94 -------HHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
E V +F L GLP +F +
Sbjct: 63 MNGSLGPQAEAVRAFARHLQAEV---GLPVHFFDE 94
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4.1|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQL--IEKH-KVLGMVVNMPKE 93
I GLDVG K IGV+L G + L R +Q+L +L I +H V+ VV MP+
Sbjct: 3 IGGLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRN 62
Query: 94 -------HHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
E +F+E+L G+ GLP + +
Sbjct: 63 MNGTYGPRAELTRAFMERLAGHS---GLPVEAWDE 94
>gi|357235815|ref|ZP_09123158.1| Holliday junction resolvase-like protein [Streptococcus criceti
HS-6]
gi|356883797|gb|EHI73997.1| Holliday junction resolvase-like protein [Streptococcus criceti
HS-6]
Length = 139
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ F G E+ P+ + + L +L++++KV VV +P
Sbjct: 3 LMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEAKEEFGFERLEELVKQYKVEKFVVGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q+ G +I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQIYGKKIADLFGLPVEY 93
>gi|134298642|ref|YP_001112138.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
gi|172044263|sp|A4J2L0.1|RUVX_DESRM RecName: Full=Putative Holliday junction resolvase
gi|134051342|gb|ABO49313.1| Holliday junction resolvase YqgF [Desulfotomaculum reducens MI-1]
Length = 137
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IGV+L G + L R +++ L Q+I ++ V ++V MPK
Sbjct: 3 IMGLDVGDKTIGVALSDPLGWTAQGLEVIRRDTIEKDMNRLAQIISEYSVERILVGMPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ E V +FIE++
Sbjct: 63 MNGTVGSQGEKVLAFIEKV 81
>gi|375089055|ref|ZP_09735391.1| RNAse H-fold protein YqgF [Dolosigranulum pigrum ATCC 51524]
gi|374560856|gb|EHR32209.1| RNAse H-fold protein YqgF [Dolosigranulum pigrum ATCC 51524]
Length = 139
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G EV P+ + + L +L+++++V G V+ +P
Sbjct: 3 LMGLDVGSKTVGVAVSDLLGWTAQGVEVIPINEAKDQFGLERLTELVQEYQVDGFVLGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCYFQKTK 123
K + E Q+ G ++ GLP YFQ +
Sbjct: 63 KNMDGSIGPRAEAAQMYGEKLTDRFGLP-VYFQDER 97
>gi|383640959|ref|ZP_09953365.1| putative Holliday junction resolvase [Sphingomonas elodea ATCC
31461]
Length = 153
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL-----TKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG K IG +L + P +KF + KA L +LI +V+GMV+ +P
Sbjct: 19 LIGLDVGTKTIGTALCDAGWSFASPAQLIRRSKFTKDKA--ALAELIAAQQVVGMVIGLP 76
>gi|317970100|ref|ZP_07971490.1| putative Holliday junction resolvase [Synechococcus sp. CB0205]
Length = 167
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--AD-QELPQLIEKHKVLGMVVNMPKE 93
+L LDVG K IG++ G V+PL R + AD Q+L L+ + ++L +VV +P +
Sbjct: 9 VLSLDVGRKRIGLAGCDPLGLTVKPLPALHRGRYPADLQQLQALVRERRILALVVGLPLD 68
Query: 94 HHEHVSSFIE 103
+ ++ E
Sbjct: 69 AQQQPTAQAE 78
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE-----LPQLIEKHKVLGMVVN 89
+ +LGLDVG IGV++ G + L RAK D+E L ++I V +VV
Sbjct: 1 MKVLGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVG 60
Query: 90 MPKEHH 95
+PK +
Sbjct: 61 LPKNMN 66
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996.1|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IGV++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ + V F+E L
Sbjct: 63 MNGTLGPQGQKVMRFVEHL 81
>gi|357486679|ref|XP_003613627.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
gi|355514962|gb|AES96585.1| Hypothetical protein MTR_5g038850 [Medicago truncatula]
Length = 124
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPL--------TKFDRAKAD----QELPQLIEKHKVLG 85
+G++VG +Y+GV++ +E K + K+D EL LI+++ V G
Sbjct: 1 MGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKSGKPKSDAVLASELKDLIDRNNVKG 60
Query: 86 MVV----------NMPKEHHEHVSSFIEQLDGNEIYRGLPFCYF 119
MV+ +P E F+++LD +++ + + YF
Sbjct: 61 MVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMFSDMNYTYF 104
>gi|87241131|gb|ABD32989.1| hypothetical protein MtrDRAFT_AC149601g11v2 [Medicago truncatula]
Length = 125
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPL--------TKFDRAKAD----QELPQLIEKHKVLG 85
+G++VG +Y+GV++ +E K + K+D EL LI+++ V G
Sbjct: 1 MGINVGTEYLGVAMSDLENKGLEDSRTSLLRLNDKSGKPKSDAVLASELKDLIDRNNVKG 60
Query: 86 MVV----------NMPKEHHEHVSSFIEQLDGNEIYRGLPFCYF 119
MV+ +P E F+++LD +++ + + YF
Sbjct: 61 MVIGKLDLDELDSRLPSSDVEAAKEFVQKLDKTDMFSDMNYTYF 104
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392941102|ref|ZP_10306746.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392292852|gb|EIW01296.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
Length = 139
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IGV++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ + V F+E L
Sbjct: 63 MNGTLGPQGQKVVRFVEHL 81
>gi|381210441|ref|ZP_09917512.1| hypothetical protein LGrbi_10986 [Lentibacillus sp. Grbi]
Length = 138
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLT--KFDR---AKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K IGV++ G + LT K+D A AD++L +I + + V+ +P
Sbjct: 3 IIGLDVGSKTIGVAVSDPLGLTAQGLTTIKWDEQHIASADEQLKTIIREQSIGKAVIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|310829301|ref|YP_003961658.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
gi|308741035|gb|ADO38695.1| RNAse H-fold protein YqgF [Eubacterium limosum KIST612]
Length = 178
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELP---QLIEKHKVLGMVVNMPKE 93
+LGLDVG+KYIG+++ G + + R D +L ++E+ V +V +PK+
Sbjct: 42 LLGLDVGDKYIGIAVSDPLGITAQGYRTWKRGTRDDDLAFFTDVVEQFNVTTLVSGLPKD 101
Query: 94 HHEHVSSFIEQLDGNEIYRGLP---FCYFQKTK 123
++GNE + FC F K +
Sbjct: 102 -----------MEGNETAQARKTRNFCQFLKKR 123
>gi|260428035|ref|ZP_05782014.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260422527|gb|EEX15778.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 157
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMPK 92
+ GLD+G K IGV+L R PL R K Q+ +L+E + ++ G+V+ +P+
Sbjct: 18 ALAGLDLGTKTIGVALSDRLLTVATPLETVKRKKFTQDAARLVEILRQREIAGVVLGLPR 77
>gi|225426409|ref|XP_002269986.1| PREDICTED: putative Holliday junction resolvase [Vitis vinifera]
Length = 169
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ H PL+ R K++ +L LI + G +V P
Sbjct: 24 LLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYP 83
Query: 92 KEHHE------HVSSFIEQLDGNEIYRGLPFCYFQK 121
+V FI+ L G+ + Y+ +
Sbjct: 84 FNRQRSSPTAVNVKVFIDDLCKTGKLEGVRYTYWDE 119
>gi|410584336|ref|ZP_11321439.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM
13965]
gi|410504271|gb|EKP93782.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM
13965]
Length = 330
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMPK 92
LGLD+G++ IGV++ G PL R D+++ +++E +H G+VV P+
Sbjct: 4 LGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPR 61
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373.1|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL---PQLIEKHKVLGMVVNMPKE 93
++GLD+G++ IGV+L +G PL +R +++L ++I+++ V +V +PK
Sbjct: 3 LMGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPKT 62
Query: 94 -------HHEHVSSFIEQL 105
+ V SF+++L
Sbjct: 63 LSGQIGPQGDKVLSFLDKL 81
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
Length = 136
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMP 91
ILG+D GNK +G+++ G +PLT + + EL Q IEK+ V ++V MP
Sbjct: 3 ILGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMP 60
>gi|297742527|emb|CBI34676.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ H PL+ R K++ +L LI + G +V P
Sbjct: 79 LLGLDVGDKYVGLAVSDLHNKIASPLSVLLRKKSNIDLMATDFQSLISDLSLAGFIVGYP 138
Query: 92 KEHHE------HVSSFIEQLDGNEIYRGLPFCYF 119
+V FI+ L G+ + Y+
Sbjct: 139 FNRQRSSPTAVNVKVFIDDLCKTGKLEGVRYTYW 172
>gi|402815556|ref|ZP_10865148.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
gi|402506596|gb|EJW17119.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
Length = 138
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQL---IEKHKVLGMVVNMPKE 93
ILGLD G++ IGV++ G + L +R K + +L +L +++H V +V+ +PK
Sbjct: 3 ILGLDYGDRRIGVAISDAFGWTAQGLEVIERRKPEDDLKRLGDIVKEHGVEAIVLGLPKN 62
Query: 94 HHEHVS-------SFIEQL 105
+ V SF EQL
Sbjct: 63 MNGTVGPRGELSMSFAEQL 81
>gi|345017552|ref|YP_004819905.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032895|gb|AEM78621.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 139
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IGV++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ V F+E L
Sbjct: 63 MSGTLGPQGQKVVRFVEHL 81
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IG+++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ + V F+E L
Sbjct: 63 MNGTLGPQGQKVVRFVEHL 81
>gi|156743642|ref|YP_001433771.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
gi|156234970|gb|ABU59753.1| Holliday junction resolvase YqgF [Roseiflexus castenholzii DSM
13941]
Length = 146
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKF---DRAKADQELPQLIEKHKVLGMVVNMP 91
++ LDVG + IGV+L PLT RA A + + LI +H V +VV +P
Sbjct: 9 VMALDVGEQRIGVALSDPTRTLATPLTTIRAKPRATALKRIASLIREHDVAALVVGLP 66
>gi|297616549|ref|YP_003701708.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
DSM 12680]
gi|297144386|gb|ADI01143.1| Holliday junction resolvase YqgF [Syntrophothermus lipocalidus
DSM 12680]
Length = 144
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KADQE-LPQLIEKHKVLGMVVNMP 91
ILGLD G K IGV++ G +PLT R+ KAD E + Q+ E ++V +V+ +P
Sbjct: 3 ILGLDPGEKRIGVAISDALGITAQPLTSIQRSSLKADIEAIRQICETYQVEHIVLGLP 60
>gi|418966157|ref|ZP_13517906.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
gi|383340811|gb|EID19099.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
Length = 139
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 35 LGILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVN 89
+ I+GLDVG+K +GV++ F G E+ P+ + + L +LI+++KV VV
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELIQEYKVDKFVVG 60
Query: 90 MPK 92
+PK
Sbjct: 61 LPK 63
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IG+++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ + V F+E L
Sbjct: 63 MNGTLGPQGQKVVRFVEHL 81
>gi|148909523|gb|ABR17857.1| unknown [Picea sitchensis]
Length = 178
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 27 QCVGENAGLG---ILGLDVGNKYIGVSLFKRHGNEV-EPLTKFDRAKAD-----QELPQL 77
Q + +N LG +LG+DVG++Y+G+++ H NE+ P + R +++ +L +L
Sbjct: 11 QILFKNGKLGTGRLLGMDVGDRYVGLAV-SNHLNEIASPHSVLIRKQSNIDSITDKLQEL 69
Query: 78 IEKHKVLGMVVNMP-------KEHHEHVSSFIEQLDGNEIYRGLPFCYF 119
+ + ++G V+ P + V F+EQL + L + Y+
Sbjct: 70 VRRFSLVGFVIGYPLPLYHFQRSQAMQVKMFVEQLQKTGRFGCLNYTYW 118
>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
Length = 144
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELP---QLIEKHKVLGMVVNMPK 92
ILGLD+G+K IG++L G + LT RA ++L +L++K++V +V+ +P+
Sbjct: 3 ILGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPR 61
>gi|357136595|ref|XP_003569889.1| PREDICTED: putative Holliday junction resolvase-like
[Brachypodium distachyon]
Length = 175
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ PL+ R K + + L++K+ + G+VV P
Sbjct: 25 LLGLDVGSKYVGLAVSDHQNRIALPLSVLGRTKTNITLMADDFKTLVKKYSLAGLVVGYP 84
>gi|429765848|ref|ZP_19298128.1| RNAse H domain protein, YqgF family [Clostridium celatum DSM 1785]
gi|429185701|gb|EKY26675.1| RNAse H domain protein, YqgF family [Clostridium celatum DSM 1785]
Length = 139
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQ---LIEKHKVLGMVVNMPKE 93
ILGLDVG+K IGV+L G + +T R K +Q++ + + +++ V +V+ +PK
Sbjct: 3 ILGLDVGSKTIGVALSDPLGWTAQGITTIRRTKKEQDIEEVHKICKEYGVETIVIGLPKN 62
Query: 94 HHEHVSSFIEQL 105
+ + E++
Sbjct: 63 MNNTIGEAGERV 74
>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 144
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G E+ P+ + + + + QL++K++V G VV +P
Sbjct: 3 LMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLP 62
Query: 92 KEHHEHV 98
K + +
Sbjct: 63 KNMNNSL 69
>gi|148242101|ref|YP_001227258.1| putative Holliday junction resolvase [Synechococcus sp. RCC307]
gi|147850411|emb|CAK27905.1| Putative Holliday junction resolvase [Synechococcus sp. RCC307]
Length = 151
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQ---LIEKHKVLGMVVNMP 91
+L LDVG + IG++ G V PL R + Q+L Q L+E+ + L +VV +P
Sbjct: 12 VLALDVGRRRIGLAGCDPLGLSVTPLPALQRGRFHQDLEQLKPLVEQRRCLALVVGLP 69
>gi|357637629|ref|ZP_09135504.1| RNAse H domain protein, YqgF family [Streptococcus macacae NCTC
11558]
gi|357586083|gb|EHJ53286.1| RNAse H domain protein, YqgF family [Streptococcus macacae NCTC
11558]
Length = 139
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 35 LGILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVN 89
+ I+GLDVG+K +GV++ F G E+ + + Q L +L+EK++V VV
Sbjct: 1 MRIMGLDVGSKTVGVAVSDPLGFTAQGVEIIKIDEVKEKFGFQRLSELVEKYQVEKFVVG 60
Query: 90 MPKEHHEHVSSFIE 103
+PK + +E
Sbjct: 61 LPKNMNNSSGPRVE 74
>gi|7529715|emb|CAB86895.1| putative protein [Arabidopsis thaliana]
Length = 548
Score = 38.5 bits (88), Expect = 0.54, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP- 91
LGLDVG+KY+G+++ PL+ R K++ +L L++ V G+VV P
Sbjct: 403 LGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDFQNLVKAFSVSGLVVGYPF 462
Query: 92 -----KEHHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
E V+ FIE+L E + + + Y+ +
Sbjct: 463 GKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDE 497
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase-like protein [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase-like protein [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase-like protein [Streptococcus suis BM407]
gi|386577064|ref|YP_006073469.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|403060764|ref|YP_006648980.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
gi|167016513|sp|A4VYN8.1|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0.1|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|402808090|gb|AFQ99581.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
Length = 139
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L+E++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|300088456|ref|YP_003758978.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528189|gb|ADJ26657.1| Holliday junction resolvase YqgF [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 143
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK--ADQE-LPQLIEKHKVLGMVVNMPK 92
++GLDVG+K++GV+L G PLT +R D E + +L+ +H +V+ +P+
Sbjct: 5 VIGLDVGDKWVGVALSDPMGVIARPLTILERCDEITDAEAVVRLVGEHDAARVVIGLPR 63
>gi|339010649|ref|ZP_08643219.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|421875423|ref|ZP_16307015.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
gi|338772804|gb|EGP32337.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|372455631|emb|CCF16564.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
Length = 137
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPKE 93
ILGLDVG K IGV++ G + + R+ + + + + I ++V VV +PK
Sbjct: 3 ILGLDVGEKTIGVAISDELGWTAQGIETIRRSSKENDFGRIEEWIATYQVQAFVVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ E+ +F EQL
Sbjct: 63 MNGTIGPKGEYCQAFAEQL 81
>gi|417091713|ref|ZP_11956519.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
gi|353533019|gb|EHC02687.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
Length = 136
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 38 LGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
+GLDVG+K +GV++ F G E+ P+ + Q L +L+E++KV VV +PK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGFQRLTELVEQYKVDKFVVGLPK 60
Query: 93 EHHEHVSSFIE 103
+ +E
Sbjct: 61 NMNNTSGPRVE 71
>gi|297820018|ref|XP_002877892.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
gi|297323730|gb|EFH54151.1| hypothetical protein ARALYDRAFT_323835 [Arabidopsis lyrata subsp.
lyrata]
Length = 542
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMP- 91
LGLDVG+KY+G+++ PL+ R K + +L L++ V G+VV P
Sbjct: 397 LGLDVGDKYVGLAISDPSNMVASPLSVLLRKKTNIDLMATDFQNLVKAFSVSGLVVGYPF 456
Query: 92 -----KEHHEHVSSFIEQLDGNEIYRGLPFCYFQK 121
E V+ FIE+L E + + + Y+ +
Sbjct: 457 GKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDE 491
>gi|343526492|ref|ZP_08763442.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|423069752|ref|ZP_17058537.1| Holliday junction resolvase [Streptococcus intermedius F0395]
gi|343394443|gb|EGV06991.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|355363626|gb|EHG11362.1| Holliday junction resolvase [Streptococcus intermedius F0395]
Length = 139
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 35 LGILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVN 89
+ I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV VV
Sbjct: 1 MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELVQEYKVDKFVVG 60
Query: 90 MPK 92
+PK
Sbjct: 61 LPK 63
>gi|407774695|ref|ZP_11121992.1| Holliday junction resolvase YqgF [Thalassospira profundimaris
WP0211]
gi|407282177|gb|EKF07736.1| Holliday junction resolvase YqgF [Thalassospira profundimaris
WP0211]
Length = 174
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQL---IEKHKVLGMVVNMPKE 93
+LGLD+G K IGV+L P R K +++ QL I+K V G+++ P+E
Sbjct: 19 VLGLDLGTKTIGVALSDVGLQIASPYELISRKKFTRDIAQLSSIIDKQNVGGIIIGFPRE 78
Query: 94 HH-------EHVSSFIEQLDGNEIYRGLPFCYFQK 121
V +FI+++ E Y LP + +
Sbjct: 79 LDGSIGKACHRVYAFIDEM---EKYIDLPVLMWDE 110
>gi|257066431|ref|YP_003152687.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
gi|256798311|gb|ACV28966.1| Holliday junction resolvase YqgF [Anaerococcus prevotii DSM 20548]
Length = 139
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 37 ILGLDVGNKYIGVSLFKRH---GNEVEPLTKFDRAKADQE-LPQLIEKHKVLGMVVNMPK 92
I+GLDVGNK IGV+L N +E + K +A D E + QL+E++ V +VV +PK
Sbjct: 4 IMGLDVGNKTIGVALSDPMFLLSNALETI-KRKKASVDIERIKQLVEENDVNLIVVGLPK 62
Query: 93 EHHE-------HVSSFIE----QLDGNEIYRGLPFCYFQ 120
+ V SF++ Q+D +Y Q
Sbjct: 63 NMNNTIGPQAMRVISFVDLLKKQVDVEVVYEDERMTTIQ 101
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3.1|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IG+++ G + LT R+ K D + + Q+I +++V ++V +PK
Sbjct: 3 IMGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKN 62
Query: 94 -------HHEHVSSFIEQL 105
+ V F+E L
Sbjct: 63 LNGTLGPQGQKVVRFVEHL 81
>gi|313890363|ref|ZP_07823994.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|416852959|ref|ZP_11910104.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
LQ 940-04]
gi|313121206|gb|EFR44314.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
SPIN 20026]
gi|356740448|gb|EHI65680.1| RNAse H domain protein, YqgF family [Streptococcus pseudoporcinus
LQ 940-04]
Length = 139
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + ++A L +L+ ++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEANQAFGFDRLSELVAQYKVSQFVVGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|150390226|ref|YP_001320275.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
gi|149950088|gb|ABR48616.1| Holliday junction resolvase YqgF [Alkaliphilus metalliredigens
QYMF]
Length = 138
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG++ IG+++ G VE + + K Q L +LI +++V ++V +PK
Sbjct: 4 IIGLDVGDRTIGIAISDLMGWTAQGVETIQRISIKKDLQRLEELIAQYEVKKILVGLPKN 63
Query: 94 HH-------EHVSSFIEQLD 106
+ E V F+E+L+
Sbjct: 64 MNGTIGPQGEKVLLFVERLE 83
>gi|326514774|dbj|BAJ99748.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 199
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ + PL+ R K + + L+ + + G+VV P
Sbjct: 36 LLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNINLMADDFKTLVNNYSLAGLVVGYP 95
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD--QELPQLIEKHKVLGMVVNMPKE-- 93
LGLDVG+ IGV+ G PL +R D + + +L+++ G+VV +PK
Sbjct: 5 LGLDVGDVRIGVAKSDILGILATPLEVINRNDTDPVKRIKELLQQENTNGLVVGIPKSLD 64
Query: 94 -----HHEHVSSFIEQLDGN 108
E V+ FIE+L N
Sbjct: 65 GTVKRQVEKVNEFIEELKKN 84
>gi|315925437|ref|ZP_07921648.1| acyl-CoA dehydrogenase [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621338|gb|EFV01308.1| acyl-CoA dehydrogenase [Pseudoramibacter alactolyticus ATCC
23263]
Length = 381
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 22 GRVEKQCVGENAGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKH 81
G++ K + + A LG +G+++ Y G+ + G EV+ L + AKAD + +L+ H
Sbjct: 35 GKIPKAVIAQMAELGFMGINIPEAYGGIGM----GEEVKALVIEEIAKADASVAELLSVH 90
Query: 82 KVLGMVVN 89
+ ++N
Sbjct: 91 TLSSDIIN 98
>gi|326531638|dbj|BAJ97823.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 187
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ + PL+ R K + + L+ + + G+VV P
Sbjct: 24 LLGLDVGSKYVGLAVSDQQNRIALPLSVLGRTKTNINLMADDFKTLVNNYSLAGLVVGYP 83
>gi|359411307|ref|ZP_09203772.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
gi|357170191|gb|EHI98365.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
Length = 137
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPK 92
I+GLDVG+K IGV++ G + LT R +Q E+ + +++K +VV +PK
Sbjct: 3 IIGLDVGSKTIGVAVSDPLGFTAQGLTTIRRTNKEQDIKEIKKFCDEYKAEAIVVGLPK 61
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum
E3 str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|226725502|sp|B2V3W4.1|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 137
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK 92
ILGLD+G K IGV++ G + +T RA + +EL ++ +++KV +V+ +PK
Sbjct: 3 ILGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
>gi|312864393|ref|ZP_07724626.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
gi|311100114|gb|EFQ58325.1| RNAse H domain protein, YqgF family [Streptococcus downei F0415]
Length = 139
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVV 88
++GLD+G+K +GV++ F G E+ P+ + AK D Q L +L++++KV VV
Sbjct: 3 LMGLDIGSKTVGVAISDPLGFTAQGLEIIPI---NEAKEDFGFQRLGELVKQYKVEKFVV 59
Query: 89 NMPKEHHEHVSSFIE 103
+PK + +E
Sbjct: 60 GLPKNMNNTSGPRVE 74
>gi|125572132|gb|EAZ13647.1| hypothetical protein OsJ_03564 [Oryza sativa Japonica Group]
Length = 180
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ PL+ R K + + L+ K+ + G VV P
Sbjct: 24 LLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYP 83
>gi|115440129|ref|NP_001044344.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|57899566|dbj|BAD87145.1| unknown protein [Oryza sativa Japonica Group]
gi|113533875|dbj|BAF06258.1| Os01g0764700 [Oryza sativa Japonica Group]
gi|215701312|dbj|BAG92736.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 178
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ PL+ R K + + L+ K+ + G VV P
Sbjct: 24 LLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYP 83
>gi|86138500|ref|ZP_01057074.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
gi|85825025|gb|EAQ45226.1| hypothetical protein MED193_05331 [Roseobacter sp. MED193]
Length = 157
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK----ADQELPQLIEKHKVLGMVVNMP 91
+ GLD G+K +GV++ R G PL R K AD L ++++K ++ G+V+ +P
Sbjct: 18 ALAGLDFGDKTVGVAISDRMGTVATPLETIRRKKFTLDADH-LFEIVKKREIGGLVLGLP 76
Query: 92 K 92
+
Sbjct: 77 R 77
>gi|254474193|ref|ZP_05087584.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
gi|211956723|gb|EEA91932.1| conserved hypothetical protein TIGR00250 [Pseudovibrio sp. JE062]
Length = 165
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMP 91
++G+D+G K IG++L PL R K Q++ +L++ +H V G+V+ +P
Sbjct: 22 LIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLCHEHGVFGLVIGLP 79
>gi|125527821|gb|EAY75935.1| hypothetical protein OsI_03854 [Oryza sativa Indica Group]
Length = 180
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVNMP 91
+LGLDVG+KY+G+++ PL+ R K + + L+ K+ + G VV P
Sbjct: 24 LLGLDVGSKYVGLAVSDDKNRIALPLSVLSRTKTNISLMADDFVTLVSKYSLAGFVVGYP 83
>gi|315453492|ref|YP_004073762.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
gi|315132544|emb|CBY83172.1| Holliday junction resolvase [Helicobacter felis ATCC 49179]
Length = 127
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEP-LTKFDRAKADQELPQLIEKHKVLGMVVNMP---- 91
++G DVG K IG++L+ + P + + +R +A +L +E + +G+VV +P
Sbjct: 1 MVGCDVGLKRIGLALYTQETILPMPAILRHNRDQARHDLKIFLENKRAVGLVVGLPNACY 60
Query: 92 KEHHEHVSSFIEQLDGNEIY 111
+ V FIE LD I+
Sbjct: 61 TDTRARVQHFIEGLDFAPIF 80
>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
bathyomarinum JL354]
Length = 162
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 25 EKQCVGENA---------GLGILGLDVGNKYIGVSLFK---RHGNEVE--PLTKFDRAKA 70
++ VGE+A G ++GLD+G K IG+++ R + ++ P KF R +
Sbjct: 3 SRELVGESAAGLAETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDR- 61
Query: 71 DQELPQLIEKHKVLGMVVNMPK 92
EL +LIE + G+V+ +P+
Sbjct: 62 -DELRKLIEARSIRGIVIGLPR 82
>gi|315638454|ref|ZP_07893631.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
gi|315481445|gb|EFU72072.1| Holliday junction resolvase family protein [Campylobacter
upsaliensis JV21]
Length = 127
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKF---DRAKADQELPQLIEKHKVLGMVVNMPK-- 92
L LD+G K IG++L+ N PL +R +A E+ +LIE+H++ ++V +PK
Sbjct: 5 LALDLGLKRIGLALYVE--NIAMPLNAILRKNRNQAANEVRKLIEEHQISKLIVGLPKGG 62
Query: 93 ----EHHEHVSSFIEQL--DGNEIY 111
E + V FI L DG I+
Sbjct: 63 ASEVEMTKRVQHFISLLEFDGEVIF 87
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2.1|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str.
Eklund 17B]
Length = 137
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK 92
ILGLD+G K IGV++ G + +T RA + +EL ++ +++KV +V+ +PK
Sbjct: 3 ILGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPK 61
>gi|56963359|ref|YP_175090.1| holliday junction resolvase [Bacillus clausii KSM-K16]
gi|62900942|sp|Q5WHM6.1|RUVX_BACSK RecName: Full=Putative Holliday junction resolvase
gi|56909602|dbj|BAD64129.1| holliday junction resolvase [Bacillus clausii KSM-K16]
Length = 142
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-----QELPQLIEKHKVLGMVVN 89
+ +GLDVG K IGV++ G + L R++ D + L QLI+++ V +V+
Sbjct: 1 MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIG 60
Query: 90 MPKEHHEHV 98
PK + V
Sbjct: 61 YPKNMNGTV 69
>gi|393725079|ref|ZP_10345006.1| putative Holliday junction resolvase [Sphingomonas sp. PAMC
26605]
Length = 154
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPL-----TKFDRAKADQELPQLIEKHKVLGMV 87
AG ++GLDVG K IG +L + P TKF + KA L LI +V G+V
Sbjct: 15 AGGRLIGLDVGTKTIGTALCDAGWSFASPALLIRRTKFQKDKA--ALTDLITTQQVKGIV 72
Query: 88 VNMP 91
+ +P
Sbjct: 73 IGLP 76
>gi|340027802|ref|ZP_08663865.1| Holliday junction resolvase-like protein [Paracoccus sp. TRP]
Length = 155
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNMPK 92
I+GLD+G K IGV++ PLT R K Q L +++++ ++G+V+ +P+
Sbjct: 18 AIVGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTLDAQALLKIVDERALVGLVLGLPR 77
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA----KADQELPQLIEKHKVLGMVVNMPK 92
++GLDVG+K IGV+L G + L R K L +++++++V ++V +PK
Sbjct: 3 VMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62
Query: 93 EHH-------EHVSSFIEQL 105
+ E V +FIE+L
Sbjct: 63 NMNGTLGPQGEKVLAFIERL 82
>gi|333924397|ref|YP_004497977.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749958|gb|AEF95065.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 140
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA----KADQELPQLIEKHKVLGMVVNMPK 92
++GLDVG+K IGV+L G + L R K L +++++++V ++V +PK
Sbjct: 3 VMGLDVGDKTIGVALSDPLGWTAQALEVIRRGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62
Query: 93 EHH-------EHVSSFIEQL 105
+ E V +FIE+L
Sbjct: 63 NMNGTLGPQGEKVLAFIERL 82
>gi|414154590|ref|ZP_11410908.1| Holliday junction resolvase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453987|emb|CCO08812.1| Holliday junction resolvase [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 137
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPKE 93
I+GLDVG K IGV+L G + L R D++ L ++I+++ V ++V +PK
Sbjct: 3 IMGLDVGEKNIGVALSDPMGWTAQGLEVIRRQHNDKDFARLQEIIKEYGVEKILVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ E V +FIE+L
Sbjct: 63 MNDTLGPQGEKVLAFIEEL 81
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + R + L +L+ ++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGTMIAEKFGLPVDY 93
>gi|399888355|ref|ZP_10774232.1| Holliday junction resolvase-like protein [Clostridium arbusti
SL206]
Length = 135
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G++ IGV++ G + +T R +K EL +L +++ V +V +PK
Sbjct: 3 ILGLDIGDRTIGVAVSDPLGYTAQGITTIRRKNESKDIDELIKLCKEYNVDTIVSGLPKN 62
Query: 94 HHEHVSSFIEQLDGNEIYRGLPFCYFQKTK 123
+ + E++ L FC KTK
Sbjct: 63 MNGTIGPQSEKV--------LGFCEILKTK 84
>gi|422872481|ref|ZP_16918974.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRIAELFGLPVDY 93
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMP 91
+ I+GLD G++ IGV++ G + L +R K E + +L+++H+V +VV +P
Sbjct: 1 MKIMGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLP 60
Query: 92 K 92
K
Sbjct: 61 K 61
>gi|222153870|ref|YP_002563047.1| Holliday junction resolvase [Streptococcus uberis 0140J]
gi|254767528|sp|B9DW62.1|RUVX_STRU0 RecName: Full=Putative Holliday junction resolvase
gi|222114683|emb|CAR43762.1| putative Holliday junction resolvase [Streptococcus uberis 0140J]
Length = 139
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + + L +L+++++V VV +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKNSFGFERLSELVKQYQVDKFVVGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 38 LGLDVGNKYIGVS---LFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEH 94
+GLDVG+K IGV+ LF +E + + K Q L +I++H + +VV +PK
Sbjct: 5 MGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKNM 64
Query: 95 H-------EHVSSFIEQLDG 107
+ E V F E+L G
Sbjct: 65 NGTIGPQGEKVLEFNERLKG 84
>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
Length = 144
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
ILGLDVG++ +GV++ + G E+ P+ + ++ + +L+ K++ +G V+ +P
Sbjct: 4 ILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKELVAKYEPIGFVLGLP 63
Query: 92 KEHH 95
K +
Sbjct: 64 KNMN 67
>gi|422877505|ref|ZP_16923975.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRIAELFGLPVDY 93
>gi|421766517|ref|ZP_16203289.1| Putative Holliday junction resolvase [Lactococcus garvieae DCC43]
gi|407625027|gb|EKF51752.1| Putative Holliday junction resolvase [Lactococcus garvieae DCC43]
Length = 142
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL--TKFDRAKAD---QELPQLIEKHKVLGMVVNMP 91
ILGLDVG K +G+++ G +P+ K D D L +LIE++K +V+ +P
Sbjct: 5 ILGLDVGTKTVGIAVSDLLGMTAQPVETIKIDSDSGDFGFNRLAELIEEYKPSKIVLGLP 64
Query: 92 K 92
K
Sbjct: 65 K 65
>gi|254465560|ref|ZP_05078971.1| conserved hypothetical protein TIGR00250 [Rhodobacterales
bacterium Y4I]
gi|206686468|gb|EDZ46950.1| conserved hypothetical protein TIGR00250 [Rhodobacterales
bacterium Y4I]
Length = 157
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPK 92
++GLD+G K IGV++ R G PL R K + L ++I+ + G+++ +P+
Sbjct: 18 ALMGLDLGTKTIGVAVSDRIGAVATPLETVKRKKFSTDAARLLEIIQARDISGILLGLPR 77
>gi|374332118|ref|YP_005082302.1| Resolvase, holliday junction-type, YqgF-like protein
[Pseudovibrio sp. FO-BEG1]
gi|359344906|gb|AEV38280.1| Resolvase, holliday junction-type, YqgF-like protein
[Pseudovibrio sp. FO-BEG1]
Length = 165
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMP 91
++G+D+G K IG++L PL R K Q++ +L++ +H V G+V+ +P
Sbjct: 22 LIGIDLGTKTIGLALTDSGRQIASPLETIKRKKFTQDVERLLDLCHEHGVYGLVIGLP 79
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|386579043|ref|YP_006075448.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|386583196|ref|YP_006079599.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|386585264|ref|YP_006081666.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|386587342|ref|YP_006083743.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
gi|389855783|ref|YP_006358026.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|353735342|gb|AER16351.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|353737410|gb|AER18418.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|353739501|gb|AER20508.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|354984503|gb|AER43401.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
Length = 136
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 38 LGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
+GLDVG+K +GV++ F G E+ P+ + + L +L+E++KV VV +PK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60
Query: 93 EHHEHVSSFIE 103
+ +E
Sbjct: 61 NMNNTSGPRVE 71
>gi|395226726|ref|ZP_10405172.1| RNAse H-fold protein YqgF [Thiovulum sp. ES]
gi|394445017|gb|EJF06017.1| RNAse H-fold protein YqgF [Thiovulum sp. ES]
Length = 128
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFD---RAKADQELPQLIEKHKVLGMVVNMP 91
+ IL LD+G K IG+++ +GN PL + R +A +E+ ++++ K +VV +P
Sbjct: 1 MTILSLDIGLKRIGIAV--ANGNFATPLKAVERKNRKQASREVSAVLKEWKCEKIVVGLP 58
Query: 92 K-----EHHEHVSSFIEQLD--GNEIYRGLPFCYFQ 120
E S F+ LD G IY F F+
Sbjct: 59 NGGNSDEMFRRFSHFVSLLDFYGEVIYFDEDFSSFE 94
>gi|78187998|ref|YP_378336.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
gi|146325560|sp|Q3AUD8.1|RUVX_CHLCH RecName: Full=Putative Holliday junction resolvase
gi|78170197|gb|ABB27293.1| Holliday junction resolvase YqgF [Chlorobium chlorochromatii CaD3]
Length = 140
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHE 96
I+ +D G K IGV+ G +P+ DRA + L ++E +V +VV P H
Sbjct: 7 IVAIDYGTKRIGVAKSDPLGMFAQPIGTVDRAGLSKLLSPMVEAGEVQLVVVGYPLNRHG 66
Query: 97 HVSSFIEQLD 106
++ E +D
Sbjct: 67 EQTAMTEVID 76
>gi|392409867|ref|YP_006446474.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
gi|390623003|gb|AFM24210.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
Length = 143
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G+K IGV+L G VE +T D A + + E V +V+ +P
Sbjct: 3 ILGLDIGSKRIGVALSDELGYTAQGVETVTYTDPESAADRIQGIAESRNVTEIVIGIPYN 62
Query: 94 HH-------EHVSSFIEQL 105
+ +V FIE+L
Sbjct: 63 MNGTEGPQVRNVRDFIERL 81
>gi|366053753|ref|ZP_09451475.1| Holliday junction resolvase-like protein [Lactobacillus suebicus
KCTC 3549]
Length = 145
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV+L + G E+ P+ + + + +L++K++V G V+ +P
Sbjct: 3 LMGLDVGSKTVGVALSDPLGWTAQGVEIIPIDEENEEFGLSRVSELVKKNQVSGFVLGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|220907921|ref|YP_002483232.1| Holliday junction resolvase-like protein [Cyanothece sp. PCC
7425]
gi|219864532|gb|ACL44871.1| Holliday junction resolvase YqgF [Cyanothece sp. PCC 7425]
Length = 150
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQELPQLIEKHKVLGMVVNMP 91
+ LGLD+G K IG++ R G LT +R A+ Q+L Q++++ +V +VV +P
Sbjct: 2 ISALGLDLGEKRIGIAGCDRTGLIATGLTTLERRSFAEDMQQLDQIVQERQVEVLVVGLP 61
>gi|379735772|ref|YP_005329278.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
gi|378783579|emb|CCG03247.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
Length = 224
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQ---LIEKHKVLGMVVNMP 91
+LG+DVG +GV+L PL RAK+ +L Q L+ +H+V +VV P
Sbjct: 87 VLGIDVGTVRVGVALSDVTRTLASPLETLRRAKSRTDLDQLVALVAEHEVTEVVVGEP 144
>gi|365853721|ref|ZP_09393986.1| RNAse H domain protein, YqgF family [Lactobacillus parafarraginis
F0439]
gi|363711879|gb|EHL95585.1| RNAse H domain protein, YqgF family [Lactobacillus parafarraginis
F0439]
Length = 144
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G E+ + + D+ + +L++K++V G VV +P
Sbjct: 3 LMGLDVGSKTVGVAVSDALGWTSQGVEIIRINEDDQEFGLDRVAELVDKYQVDGFVVGLP 62
Query: 92 KEHHEHV 98
K + +
Sbjct: 63 KNMNNSL 69
>gi|365924473|ref|ZP_09447236.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420265361|ref|ZP_14767923.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394428193|gb|EJF00776.1| Holliday junction resolvase-like protein [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 145
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +G+++ + G E+ P+ + + + + +L++++++ G VV +P
Sbjct: 4 LMGLDVGSKTVGIAISDLLGWTAQGIEIIPIDEDNEEFGIERVKELVQQYEISGFVVGLP 63
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 64 KNMNNTSGPRVE 75
>gi|449911069|ref|ZP_21794988.1| Holliday junction resolvase-like protein [Streptococcus mutans
OMZ175]
gi|450132401|ref|ZP_21870031.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML8]
gi|449153178|gb|EMB56866.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML8]
gi|449258700|gb|EMC56264.1| Holliday junction resolvase-like protein [Streptococcus mutans
OMZ175]
Length = 139
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K IGV++ F G E+ P+ + FDR L L++ +KV
Sbjct: 3 IIGLDVGSKTIGVAVSDPLGFTAQGLEIIPINEAKGEFGFDR------LADLVKDYKVEK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|408789873|ref|ZP_11201514.1| Putative Holliday junction resolvase [Lactobacillus florum 2F]
gi|408520895|gb|EKK20917.1| Putative Holliday junction resolvase [Lactobacillus florum 2F]
Length = 140
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 35 LGILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVN 89
+ I+GLDVG+K +GV++ + G E+ P+ + D + +LI ++V +VV
Sbjct: 1 MKIMGLDVGSKTVGVAISDALGWTAQGIEIIPINEVDHQFGLDRVGELINDYQVSKVVVG 60
Query: 90 MPK 92
+PK
Sbjct: 61 LPK 63
>gi|403379208|ref|ZP_10921265.1| Holliday junction resolvase YqgF [Paenibacillus sp. JC66]
Length = 138
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKE 93
++GLD G+K IGV++ G VE + + +R + L +LI +H+V +VV +PK
Sbjct: 3 LMGLDYGDKTIGVAISDELGWTAQGVETIRRTNRKADMKRLGELIREHQVEEIVVGLPKN 62
Query: 94 HH-------EHVSSFIEQL 105
+ E F EQL
Sbjct: 63 MNGTIGPRGELSMEFAEQL 81
>gi|422822645|ref|ZP_16870838.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRIAELFGLPVDY 93
>gi|149913939|ref|ZP_01902471.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
gi|149812223|gb|EDM72054.1| hypothetical protein RAZWK3B_18088 [Roseobacter sp. AzwK-3b]
Length = 158
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMPK 92
I+GLD+G K IGV++ R + P R K + +L+E + +V G+V+ +P+
Sbjct: 19 IMGLDLGTKTIGVAISDRLLSVATPTETIKRKKFSVDAARLLEIATQREVAGLVLGLPR 77
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7.1|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRIAELFGLPVDY 93
>gi|149174656|ref|ZP_01853281.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
gi|148846350|gb|EDL60688.1| Holliday junction resolvase YqgF [Planctomyces maris DSM 8797]
Length = 162
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQ-------LIEKHKVLGMVVN 89
+LGLD G K +G+++ N PL ++R Q LPQ +I +++ G+VV
Sbjct: 21 LLGLDYGTKRVGIAISTFEQNIASPLDNYNR----QSLPQDQKHLLSIITEYRCKGLVVG 76
Query: 90 MP 91
+P
Sbjct: 77 LP 78
>gi|422861692|ref|ZP_16908332.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRIAELFGLPVDY 93
>gi|134300999|ref|YP_001114495.1| hypothetical protein Dred_3168 [Desulfotomaculum reducens MI-1]
gi|134053699|gb|ABO51670.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 600
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 22 GRVEKQCVGENAGLGILGLDVGNKYIGVSLFKR-HGNEVEPLTKFDRAK----ADQELPQ 76
G V +Q NA +GI GL++G + G L H V+PL+K R++ A+QELP+
Sbjct: 237 GPVMEQYRPSNARVGIRGLNIGRQKNGTLLINALHIFGVDPLSKESRSEARRLAEQELPR 296
Query: 77 LIEKHK 82
+I+ K
Sbjct: 297 IIDYMK 302
>gi|365157965|ref|ZP_09354208.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
gi|363622144|gb|EHL73315.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
Length = 138
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPL--TKFDRAKAD---QELPQLIEKHKVLGMVVNMPK 92
+GLDVG+K +GV++ G + + K D K D L +LIE ++V +VV +PK
Sbjct: 4 MGLDVGSKTVGVAISDELGWTAQGIETIKVDEEKGDLGFDRLKELIEDYQVDKIVVGLPK 63
Query: 93 EHHEHV 98
+ +
Sbjct: 64 NMNNTI 69
>gi|423014665|ref|ZP_17005386.1| lipopolysaccharide biosynthesis protein [Achromobacter xylosoxidans
AXX-A]
gi|338782281|gb|EGP46656.1| lipopolysaccharide biosynthesis protein [Achromobacter xylosoxidans
AXX-A]
Length = 630
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 67 RAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDG 107
R A +LP+LIE+H++ +++ +P + S +EQ++G
Sbjct: 198 RVHAPTDLPRLIERHQIQQLLIAIPSATPTQIRSIVEQVEG 238
>gi|374308670|ref|YP_005055101.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
Length = 140
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMPKE 93
IL LDVG++ IG+++ G +PL R K +++L +++E ++ + +V +PK
Sbjct: 6 ILALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLPKN 65
Query: 94 -------HHEHVSSFIEQL 105
E F+EQL
Sbjct: 66 MDGTVGFQGEKTMQFVEQL 84
>gi|335039185|ref|ZP_08532365.1| Holliday junction resolvase [Caldalkalibacillus thermarum TA2.A1]
gi|334180919|gb|EGL83504.1| Holliday junction resolvase [Caldalkalibacillus thermarum TA2.A1]
Length = 139
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG K IGVS+ + G EV T R A L +LI +++V ++V +P
Sbjct: 3 IMGLDVGQKTIGVSVSDELGWTAQGIEVIKRTDLQRDLA--RLEELIAEYQVGQIIVGLP 60
Query: 92 K 92
K
Sbjct: 61 K 61
>gi|254456227|ref|ZP_05069656.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083229|gb|EDZ60655.1| conserved hypothetical protein TIGR00250 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 151
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMP 91
++GLD+G+K IGVS+ + P ++ ++ EL ++IE++ + G+VV P
Sbjct: 17 LIGLDLGSKRIGVSICDEKQSIATPFKTINKTNTNELINELKKIIEEYDIKGIVVGNP 74
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 140
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK 92
ILGLD+G K IGV++ G + LT R + ++L ++ +++KV +V+ +PK
Sbjct: 4 ILGLDLGQKTIGVAISDPLGFTAQGLTTIRRGSKEKDIEDLKKICDEYKVETIVIGLPK 62
>gi|319940102|ref|ZP_08014456.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
gi|319810816|gb|EFW07143.1| crossover junction endodeoxyribonuclease [Streptococcus anginosus
1_2_62CV]
Length = 139
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ P+ + FDR L +L++++KV
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDR------LSELVKEYKVNK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|373470777|ref|ZP_09561878.1| RNAse H domain protein, YqgF family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371761799|gb|EHO50387.1| RNAse H domain protein, YqgF family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 143
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ------ELPQLIE----KHKVLGM 86
I+GLD G+K IGV++ G +P +R K ++ + +++E K V+G+
Sbjct: 7 IMGLDYGSKTIGVAISDSLGLTAQPFETIERDKENKLRRSLARIAKIVEENNIKEIVVGL 66
Query: 87 VVNMPKEHHEHVS---SFIEQL 105
+NM + +E V+ F+E+L
Sbjct: 67 PINMNGKSNERVALTMEFVEKL 88
>gi|149202250|ref|ZP_01879223.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
gi|149144348|gb|EDM32379.1| Holliday junction resolvase YqgF [Roseovarius sp. TM1035]
Length = 160
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNM 90
G I+GLD+G K IGV+L R + P R K + L Q++ +V G+++ +
Sbjct: 16 GRAIMGLDLGTKTIGVALSDRLWSVASPHETVKRVKFTDDAARLLQIVAGREVGGIILGL 75
Query: 91 PK 92
P+
Sbjct: 76 PR 77
>gi|315652510|ref|ZP_07905494.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Lachnoanaerobaculum saburreum DSM 3986]
gi|419719186|ref|ZP_14246473.1| RNAse H domain protein, YqgF family [Lachnoanaerobaculum saburreum
F0468]
gi|315485226|gb|EFU75624.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Lachnoanaerobaculum saburreum DSM 3986]
gi|383304704|gb|EIC96102.1| RNAse H domain protein, YqgF family [Lachnoanaerobaculum saburreum
F0468]
Length = 145
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ------ELPQLIE----KHKVLGM 86
I+GLD G+K IGV++ G +P +R+K ++ ++ +++E K V+G+
Sbjct: 7 IMGLDYGSKTIGVAISDSLGLTAQPFETIERSKENKLRRSLAKIAKIVEEKNIKKIVVGL 66
Query: 87 VVNMPKEHHEHVS---SFIEQL 105
VNM + VS F+E+L
Sbjct: 67 PVNMNGRRGKRVSLTLEFVEKL 88
>gi|194398342|ref|YP_002036896.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
G54]
gi|226695305|sp|B5E6E1.1|RUVX_STRP4 RecName: Full=Putative Holliday junction resolvase
gi|194358009|gb|ACF56457.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
Length = 139
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 21/97 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ + + FDR K +L++ +KV
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGXEIIQINEEQGQFGFDRVK------ELVDTYKVER 56
Query: 86 MVVNMPKEHHEHVSSFIE--QLDGNEI--YRGLPFCY 118
VV +PK + +E Q G ++ + GLP Y
Sbjct: 57 FVVGLPKNMNNTSGPRVEASQAYGAKLEEFFGLPVDY 93
>gi|56697209|ref|YP_167573.1| Holliday junction resolvase-like protein [Ruegeria pomeroyi
DSS-3]
gi|62900907|sp|Q5LQY2.1|RUVX_SILPO RecName: Full=Putative Holliday junction resolvase
gi|56678946|gb|AAV95612.1| conserved hypothetical protein TIGR00250 [Ruegeria pomeroyi
DSS-3]
Length = 154
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 36 GILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNMPK 92
+ GLD+G+K IGV++ R PL R K L ++E+ ++ G+V+ +P+
Sbjct: 18 ALAGLDLGDKTIGVAVSDRMRGVATPLETIRRKKFGLDASALLAIVEQREIAGIVLGLPR 77
>gi|294501347|ref|YP_003565047.1| putative Holliday junction resolvase [Bacillus megaterium QM
B1551]
gi|295706694|ref|YP_003599769.1| Holliday junction resolvase [Bacillus megaterium DSM 319]
gi|294351284|gb|ADE71613.1| putative Holliday junction resolvase [Bacillus megaterium QM
B1551]
gi|294804353|gb|ADF41419.1| putative Holliday junction resolvase [Bacillus megaterium DSM
319]
Length = 138
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE-----LPQLIEKHKVLGMVVNMP 91
+LGLDVG K IGV++ G + + A E L QLI+++ V +VV +P
Sbjct: 3 VLGLDVGTKTIGVAVSDEMGWTAQGIETIKIADEQMEQSYPRLQQLIDEYSVEKIVVGLP 62
Query: 92 KEHH 95
K +
Sbjct: 63 KNMN 66
>gi|290581344|ref|YP_003485736.1| hypothetical protein SmuNN2025_1818 [Streptococcus mutans NN2025]
gi|449969197|ref|ZP_21813072.1| hypothetical protein SMU41_01340 [Streptococcus mutans 2VS1]
gi|450030651|ref|ZP_21833342.1| hypothetical protein SMU61_06871 [Streptococcus mutans G123]
gi|450034411|ref|ZP_21834366.1| hypothetical protein SMU62_02149 [Streptococcus mutans M21]
gi|450058922|ref|ZP_21843285.1| hypothetical protein SMU69_07935 [Streptococcus mutans NLML4]
gi|450068250|ref|ZP_21847061.1| hypothetical protein SMU72_07684 [Streptococcus mutans NLML9]
gi|450092555|ref|ZP_21856060.1| hypothetical protein SMU78_03449 [Streptococcus mutans W6]
gi|450149187|ref|ZP_21876025.1| hypothetical protein SMU92_05261 [Streptococcus mutans 14D]
gi|450164000|ref|ZP_21881071.1| hypothetical protein SMU95_01375 [Streptococcus mutans B]
gi|254998243|dbj|BAH88844.1| hypothetical protein [Streptococcus mutans NN2025]
gi|449174317|gb|EMB76811.1| hypothetical protein SMU41_01340 [Streptococcus mutans 2VS1]
gi|449192603|gb|EMB94018.1| hypothetical protein SMU61_06871 [Streptococcus mutans G123]
gi|449196514|gb|EMB97779.1| hypothetical protein SMU62_02149 [Streptococcus mutans M21]
gi|449203577|gb|EMC04434.1| hypothetical protein SMU69_07935 [Streptococcus mutans NLML4]
gi|449207245|gb|EMC07923.1| hypothetical protein SMU72_07684 [Streptococcus mutans NLML9]
gi|449218108|gb|EMC18130.1| hypothetical protein SMU78_03449 [Streptococcus mutans W6]
gi|449234910|gb|EMC33896.1| hypothetical protein SMU92_05261 [Streptococcus mutans 14D]
gi|449242457|gb|EMC41043.1| hypothetical protein SMU95_01375 [Streptococcus mutans B]
Length = 139
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L L++ +KV VV +P
Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFERLADLVKDYKVEKFVVGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|336452787|ref|YP_004607253.1| hypothetical protein HBZC1_05550 [Helicobacter bizzozeronii CIII-1]
gi|421881939|ref|ZP_16313235.1| Putative Holliday junction resolvase YggF [Helicobacter
bizzozeronii CCUG 35545]
gi|335332814|emb|CCB79541.1| putative protein [Helicobacter bizzozeronii CIII-1]
gi|375315811|emb|CCF81231.1| Putative Holliday junction resolvase YggF [Helicobacter
bizzozeronii CCUG 35545]
Length = 135
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 37 ILGLDVGNKYIGVSLFKRHGN-EVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHH 95
+L D+G K IG++++ + +EP+ + +R +A Q+L L+E K ++V +P H+
Sbjct: 3 LLAADIGLKRIGLAMWVQGVILPLEPILRHNRQQASQQLQTLLELKKPDTLIVGLPDAHY 62
Query: 96 EHVSSFI 102
+ I
Sbjct: 63 TTTRARI 69
>gi|224053911|ref|XP_002298037.1| predicted protein [Populus trichocarpa]
gi|222845295|gb|EEE82842.1| predicted protein [Populus trichocarpa]
Length = 170
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL-----PQLIEKHKVLGMVVNMPK 92
LGLDVG+KY+G+++ PL+ R K++ EL LI + + G +V P
Sbjct: 25 LGLDVGDKYVGLAVSDPLNKIASPLSVLLRKKSNIELMATDFQSLISELSLGGFIVGYPF 84
Query: 93 EHHE------HVSSFIEQLDGNEIYRGLPFCYFQK 121
+ V F++ L G+ F Y+ +
Sbjct: 85 DRQRGAPDAVRVKLFVDDLCKTGKLEGVKFTYWDE 119
>gi|386581110|ref|YP_006077514.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
gi|353733256|gb|AER14266.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
Length = 136
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 38 LGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
+GLDVG+K +GV++ F G E+ P+ + + L +L+E++KV VV +PK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLEHLTELVEQYKVDKFVVGLPK 60
Query: 93 EHHEHVSSFIE 103
+ +E
Sbjct: 61 NMNNTSGPRVE 71
>gi|408907409|emb|CCM11493.1| Putative Holliday junction resolvase YggF [Helicobacter
heilmannii ASB1.4]
Length = 130
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 37 ILGLDVGNKYIGVSL-FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHH 95
I+ D+G K IG+++ + +EP+ + R +A EL L+E K +VV +P EH+
Sbjct: 2 IMACDIGLKRIGLAMGVQGVVLPLEPILRTSRKQASTELQALLESKKPSCLVVGLPPEHY 61
>gi|397906495|ref|ZP_10507295.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
gi|397160452|emb|CCJ34632.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
Length = 137
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK- 92
ILGLD+G K IG++L G + L +R K D +E+ ++I ++V +VV +PK
Sbjct: 3 ILGLDIGEKRIGIALSDPLGWIAQSLKTLERKSIKNDVEEIIKIINDYQVEKVVVGLPKN 62
Query: 93 ------EHHEHVSSFIEQL 105
E + V +F E+L
Sbjct: 63 MNGTLGESGQKVMNFCEKL 81
>gi|407769482|ref|ZP_11116857.1| putative Holliday junction resolvase [Thalassospira xiamenensis
M-5 = DSM 17429]
gi|407287404|gb|EKF12885.1| putative Holliday junction resolvase [Thalassospira xiamenensis
M-5 = DSM 17429]
Length = 176
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ---ELPQLIEKHKVLGMVVNMPKE 93
+LGLD+G K IGV+L P + R K + EL ++ K V G+++ P+E
Sbjct: 19 VLGLDLGTKTIGVALSDVGLQIASPYSLISRKKFTRDIAELSAIVTKQNVGGIIIGFPRE 78
>gi|300854403|ref|YP_003779387.1| Holliday junction resolvase [Clostridium ljungdahlii DSM 13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA---KADQELPQLIEKHKVLGMVVNMPKE 93
ILGLD+G++ IGV+L G + +T R K +EL + EK+ V +V +PK
Sbjct: 3 ILGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPKN 62
Query: 94 -------HHEHVSSF---IEQ 104
E V SF IEQ
Sbjct: 63 MNGTLGLQSEKVLSFCKVIEQ 83
>gi|450046188|ref|ZP_21838810.1| Holliday junction resolvase-like protein [Streptococcus mutans N34]
gi|449199220|gb|EMC00298.1| Holliday junction resolvase-like protein [Streptococcus mutans N34]
Length = 139
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ P+ + FDR L L++ +KV
Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDR------LADLVKDYKVEK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
Length = 127
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKF---DRAKADQELPQLIEKHKVLGMVVNMPK-- 92
L LD+G K IG++L+ N PL +R +A E+ +LI++H++ ++V +PK
Sbjct: 5 LALDLGLKRIGLALYVE--NIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLPKGG 62
Query: 93 ----EHHEHVSSFIEQL--DGNEIY 111
E + V FI L DG I+
Sbjct: 63 ASEVEMTKRVQHFISLLEFDGEVIF 87
>gi|24380413|ref|NP_722368.1| Holliday junction resolvase-like protein [Streptococcus mutans
UA159]
gi|387787003|ref|YP_006252099.1| Holliday junction resolvase-like protein [Streptococcus mutans
LJ23]
gi|397650608|ref|YP_006491135.1| Holliday junction resolvase-like protein [Streptococcus mutans
GS-5]
gi|449864671|ref|ZP_21778529.1| Holliday junction resolvase-like protein [Streptococcus mutans U2B]
gi|449869484|ref|ZP_21780131.1| Holliday junction resolvase-like protein [Streptococcus mutans
8ID3]
gi|449876171|ref|ZP_21782645.1| Holliday junction resolvase-like protein [Streptococcus mutans S1B]
gi|449883059|ref|ZP_21784918.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA38]
gi|449886740|ref|ZP_21786405.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA41]
gi|449893967|ref|ZP_21789022.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF12]
gi|449896281|ref|ZP_21789574.1| Holliday junction resolvase-like protein [Streptococcus mutans
R221]
gi|449904924|ref|ZP_21792924.1| Holliday junction resolvase-like protein [Streptococcus mutans
M230]
gi|449914221|ref|ZP_21795486.1| Holliday junction resolvase-like protein [Streptococcus mutans
15JP3]
gi|449919057|ref|ZP_21797693.1| Holliday junction resolvase-like protein [Streptococcus mutans
1SM1]
gi|449924897|ref|ZP_21799938.1| Holliday junction resolvase-like protein [Streptococcus mutans
4SM1]
gi|449932937|ref|ZP_21803042.1| Holliday junction resolvase-like protein [Streptococcus mutans
3SN1]
gi|449936530|ref|ZP_21804018.1| Holliday junction resolvase-like protein [Streptococcus mutans
2ST1]
gi|449943298|ref|ZP_21806356.1| Holliday junction resolvase-like protein [Streptococcus mutans
11A1]
gi|449947069|ref|ZP_21807180.1| Holliday junction resolvase-like protein [Streptococcus mutans
11SSST2]
gi|449955924|ref|ZP_21809340.1| Holliday junction resolvase-like protein [Streptococcus mutans
4VF1]
gi|449964609|ref|ZP_21811397.1| Holliday junction resolvase-like protein [Streptococcus mutans
15VF2]
gi|449973534|ref|ZP_21814774.1| Holliday junction resolvase-like protein [Streptococcus mutans
11VS1]
gi|449981691|ref|ZP_21817896.1| Holliday junction resolvase-like protein [Streptococcus mutans
5SM3]
gi|449983744|ref|ZP_21818615.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM2]
gi|449989450|ref|ZP_21821065.1| Holliday junction resolvase-like protein [Streptococcus mutans
NVAB]
gi|449994786|ref|ZP_21822713.1| Holliday junction resolvase-like protein [Streptococcus mutans A9]
gi|449999935|ref|ZP_21824810.1| Holliday junction resolvase-like protein [Streptococcus mutans N29]
gi|450005610|ref|ZP_21826771.1| Holliday junction resolvase-like protein [Streptococcus mutans
NMT4863]
gi|450010886|ref|ZP_21828848.1| Holliday junction resolvase-like protein [Streptococcus mutans A19]
gi|450023571|ref|ZP_21830686.1| Holliday junction resolvase-like protein [Streptococcus mutans
U138]
gi|450040390|ref|ZP_21836783.1| Holliday junction resolvase-like protein [Streptococcus mutans T4]
gi|450051779|ref|ZP_21841016.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM1]
gi|450062440|ref|ZP_21844325.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML5]
gi|450072830|ref|ZP_21848803.1| Holliday junction resolvase-like protein [Streptococcus mutans M2A]
gi|450076220|ref|ZP_21849757.1| Holliday junction resolvase-like protein [Streptococcus mutans
N3209]
gi|450081123|ref|ZP_21851528.1| Holliday junction resolvase-like protein [Streptococcus mutans N66]
gi|450088219|ref|ZP_21854698.1| Holliday junction resolvase-like protein [Streptococcus mutans
NV1996]
gi|450100385|ref|ZP_21858741.1| Holliday junction resolvase-like protein [Streptococcus mutans SF1]
gi|450106955|ref|ZP_21860768.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF14]
gi|450110650|ref|ZP_21862224.1| Holliday junction resolvase-like protein [Streptococcus mutans SM6]
gi|450116669|ref|ZP_21864609.1| Holliday junction resolvase-like protein [Streptococcus mutans ST1]
gi|450120886|ref|ZP_21865973.1| Holliday junction resolvase-like protein [Streptococcus mutans ST6]
gi|450127807|ref|ZP_21868752.1| Holliday junction resolvase-like protein [Streptococcus mutans U2A]
gi|450139704|ref|ZP_21872631.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML1]
gi|450144056|ref|ZP_21873805.1| Holliday junction resolvase-like protein [Streptococcus mutans
1ID3]
gi|450153992|ref|ZP_21877490.1| Holliday junction resolvase-like protein [Streptococcus mutans 21]
gi|450159286|ref|ZP_21879364.1| Holliday junction resolvase-like protein [Streptococcus mutans
66-2A]
gi|450171954|ref|ZP_21884310.1| Holliday junction resolvase-like protein [Streptococcus mutans SM4]
gi|450174699|ref|ZP_21884730.1| Holliday junction resolvase-like protein [Streptococcus mutans SM1]
gi|450181414|ref|ZP_21887822.1| Holliday junction resolvase-like protein [Streptococcus mutans 24]
gi|32130029|sp|Q8DRX8.1|RUVX_STRMU RecName: Full=Putative Holliday junction resolvase
gi|24378438|gb|AAN59674.1|AE015030_4 conserved hypothetical protein [Streptococcus mutans UA159]
gi|379133404|dbj|BAL70156.1| Holliday junction resolvase-like protein [Streptococcus mutans
LJ23]
gi|392604177|gb|AFM82341.1| Holliday junction resolvase-like protein [Streptococcus mutans
GS-5]
gi|449149461|gb|EMB53263.1| Holliday junction resolvase-like protein [Streptococcus mutans
11A1]
gi|449151262|gb|EMB55003.1| Holliday junction resolvase-like protein [Streptococcus mutans
1ID3]
gi|449158197|gb|EMB61619.1| Holliday junction resolvase-like protein [Streptococcus mutans
8ID3]
gi|449158377|gb|EMB61794.1| Holliday junction resolvase-like protein [Streptococcus mutans
15JP3]
gi|449159754|gb|EMB63066.1| Holliday junction resolvase-like protein [Streptococcus mutans
1SM1]
gi|449160784|gb|EMB64025.1| Holliday junction resolvase-like protein [Streptococcus mutans
3SN1]
gi|449162189|gb|EMB65341.1| Holliday junction resolvase-like protein [Streptococcus mutans
4SM1]
gi|449165500|gb|EMB68504.1| Holliday junction resolvase-like protein [Streptococcus mutans
2ST1]
gi|449169033|gb|EMB71822.1| Holliday junction resolvase-like protein [Streptococcus mutans
11SSST2]
gi|449170857|gb|EMB73547.1| Holliday junction resolvase-like protein [Streptococcus mutans
4VF1]
gi|449172333|gb|EMB74963.1| Holliday junction resolvase-like protein [Streptococcus mutans
15VF2]
gi|449175587|gb|EMB77993.1| Holliday junction resolvase-like protein [Streptococcus mutans
5SM3]
gi|449179463|gb|EMB81674.1| Holliday junction resolvase-like protein [Streptococcus mutans
11VS1]
gi|449181000|gb|EMB83132.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM2]
gi|449182564|gb|EMB84584.1| Holliday junction resolvase-like protein [Streptococcus mutans
NVAB]
gi|449184946|gb|EMB86855.1| Holliday junction resolvase-like protein [Streptococcus mutans A9]
gi|449186355|gb|EMB88190.1| Holliday junction resolvase-like protein [Streptococcus mutans N29]
gi|449188401|gb|EMB90113.1| Holliday junction resolvase-like protein [Streptococcus mutans
NMT4863]
gi|449189873|gb|EMB91493.1| Holliday junction resolvase-like protein [Streptococcus mutans A19]
gi|449193178|gb|EMB94569.1| Holliday junction resolvase-like protein [Streptococcus mutans
U138]
gi|449199031|gb|EMC00116.1| Holliday junction resolvase-like protein [Streptococcus mutans T4]
gi|449201593|gb|EMC02583.1| Holliday junction resolvase-like protein [Streptococcus mutans
NFSM1]
gi|449205780|gb|EMC06510.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML5]
gi|449210711|gb|EMC11146.1| Holliday junction resolvase-like protein [Streptococcus mutans M2A]
gi|449212804|gb|EMC13155.1| Holliday junction resolvase-like protein [Streptococcus mutans
N3209]
gi|449215600|gb|EMC15782.1| Holliday junction resolvase-like protein [Streptococcus mutans N66]
gi|449216768|gb|EMC16860.1| Holliday junction resolvase-like protein [Streptococcus mutans
NV1996]
gi|449220458|gb|EMC20328.1| Holliday junction resolvase-like protein [Streptococcus mutans SF1]
gi|449222648|gb|EMC22367.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF14]
gi|449224650|gb|EMC24276.1| Holliday junction resolvase-like protein [Streptococcus mutans SM6]
gi|449226773|gb|EMC26264.1| Holliday junction resolvase-like protein [Streptococcus mutans ST1]
gi|449229780|gb|EMC29075.1| Holliday junction resolvase-like protein [Streptococcus mutans ST6]
gi|449230222|gb|EMC29489.1| Holliday junction resolvase-like protein [Streptococcus mutans U2A]
gi|449232649|gb|EMC31752.1| Holliday junction resolvase-like protein [Streptococcus mutans
NLML1]
gi|449238263|gb|EMC37037.1| Holliday junction resolvase-like protein [Streptococcus mutans 21]
gi|449241403|gb|EMC40035.1| Holliday junction resolvase-like protein [Streptococcus mutans
66-2A]
gi|449243271|gb|EMC41716.1| Holliday junction resolvase-like protein [Streptococcus mutans SM4]
gi|449246538|gb|EMC44840.1| Holliday junction resolvase-like protein [Streptococcus mutans 24]
gi|449248155|gb|EMC46416.1| Holliday junction resolvase-like protein [Streptococcus mutans SM1]
gi|449250310|gb|EMC48376.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA38]
gi|449252979|gb|EMC50946.1| Holliday junction resolvase-like protein [Streptococcus mutans S1B]
gi|449253817|gb|EMC51755.1| Holliday junction resolvase-like protein [Streptococcus mutans
SA41]
gi|449255584|gb|EMC53432.1| Holliday junction resolvase-like protein [Streptococcus mutans
SF12]
gi|449258763|gb|EMC56323.1| Holliday junction resolvase-like protein [Streptococcus mutans
M230]
gi|449262464|gb|EMC59913.1| Holliday junction resolvase-like protein [Streptococcus mutans
R221]
gi|449264742|gb|EMC62077.1| Holliday junction resolvase-like protein [Streptococcus mutans U2B]
Length = 139
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ P+ + FDR L L++ +KV
Sbjct: 3 IIGLDVGSKTVGVAVSDPLGFTAQGLEIIPINEAKGEFGFDR------LADLVKDYKVEK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|78044200|ref|YP_359400.1| hypothetical protein CHY_0542 [Carboxydothermus hydrogenoformans
Z-2901]
gi|146325559|sp|Q3AEN4.1|RUVX_CARHZ RecName: Full=Putative Holliday junction resolvase
gi|77996315|gb|ABB15214.1| conserved hypothetical protein TIGR00250 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 138
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPK 92
+LGLDVG+K IGV+L G + LT R K D +E+ ++I+ H V +V+ P+
Sbjct: 3 VLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDLEEIKKIIDLHHVTEVVIGYPR 61
>gi|422880993|ref|ZP_16927449.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G + GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAELFGLPVDY 93
>gi|354582082|ref|ZP_09000984.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
gi|353199481|gb|EHB64943.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
Length = 137
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQEL---PQLIEKHKVLGMVVNMPK 92
I+GLD G++ IG++L G + L +R + EL +L+++H+V +VV +PK
Sbjct: 4 IMGLDYGDRRIGIALSDVFGWTAQGLEVVERRRDGSELNRIAELVKEHEVGEIVVGLPK 62
>gi|422853265|ref|ZP_16899929.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G + GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAELFGLPVDY 93
>gi|429204945|ref|ZP_19196226.1| Holliday junction resolvase-like protein [Lactobacillus
saerimneri 30a]
gi|428146807|gb|EKW99042.1| Holliday junction resolvase-like protein [Lactobacillus
saerimneri 30a]
Length = 146
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG++ +GV++ + G E+ P+ + ++ + +L++++ V+G+V+ +P
Sbjct: 4 LMGLDVGSRTVGVAISDELGWTAQGVEIVPINEDEQDFNITRIKELVDQYGVVGVVLGLP 63
Query: 92 KEHH 95
K +
Sbjct: 64 KNMN 67
>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
Malish 7]
gi|32130054|sp|Q92IG5.1|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
Length = 154
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL---TKFDRAKADQELPQLIEKHKVLGMVVNMP-- 91
++ +D GNK +G++L + + PL T+ ++ L +IEK+KV G+++ +P
Sbjct: 19 LIAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPID 78
Query: 92 -----KEHHEHVSSFIEQL 105
E V F E+L
Sbjct: 79 MSGAVTEQTNIVMKFAEEL 97
>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
Length = 135
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE-----LPQLIEKHKVLGMVVNMPK 92
+GLDVG+K +GV+L G + L ++ ++E + ++I++H+V +VV +PK
Sbjct: 1 MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDR---AKADQELPQLIEKHKVLGMVVNMPK 92
LGLD+G++ IGV++ G PL R A+ ++ L+ +H G+VV P+
Sbjct: 4 LGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPR 61
>gi|407473797|ref|YP_006788197.1| holliday junction resolvase [Clostridium acidurici 9a]
gi|407050305|gb|AFS78350.1| holliday junction resolvase [Clostridium acidurici 9a]
Length = 137
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRA--KAD-QELPQLIEKHKVLGMVVNMPKE 93
I+GLDVG+K IGV++ G + +T R K+D +EL ++E++ + +V+ +PK
Sbjct: 4 IMGLDVGDKTIGVAVSDPLGITSQGVTTIRRKGIKSDIEELKSIVEEYCIEKVVIGLPKN 63
Query: 94 HHEHV 98
+ +
Sbjct: 64 MNNTI 68
>gi|414156440|ref|ZP_11412742.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
gi|410870087|gb|EKS18046.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
Length = 139
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + + + L +L+ ++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLSELVAQYKVDRFVVGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q+ G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQVYGAMIAEKFGLPVDY 93
>gi|422824588|ref|ZP_16872775.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|422825332|ref|ZP_16873511.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|422850590|ref|ZP_16897260.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|422856681|ref|ZP_16903337.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|422857416|ref|ZP_16904066.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|422863609|ref|ZP_16910240.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|422866521|ref|ZP_16913146.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G + GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAELFGLPVDY 93
>gi|259501302|ref|ZP_05744204.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302190974|ref|ZP_07267228.1| Holliday junction resolvase-like protein [Lactobacillus iners
AB-1]
gi|309803606|ref|ZP_07697698.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|309805305|ref|ZP_07699356.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|309805981|ref|ZP_07700007.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|309807412|ref|ZP_07701375.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|309809657|ref|ZP_07703513.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|312870703|ref|ZP_07730810.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|312872863|ref|ZP_07732925.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|312873741|ref|ZP_07733786.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|312875199|ref|ZP_07735212.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|315653053|ref|ZP_07905981.1| crossover junction endodeoxyribonuclease [Lactobacillus iners
ATCC 55195]
gi|325911934|ref|ZP_08174337.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325913722|ref|ZP_08176083.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
60-B]
gi|329919583|ref|ZP_08276572.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|349612116|ref|ZP_08891343.1| Holliday junction resolvase [Lactobacillus sp. 7_1_47FAA]
gi|259167272|gb|EEW51767.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308164354|gb|EFO66609.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
11V1-d]
gi|308165381|gb|EFO67613.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
09V1-c]
gi|308167584|gb|EFO69737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
03V1-b]
gi|308169334|gb|EFO71389.1| RNAse H domain protein, YqgF family [Lactobacillus iners LactinV
01V1-a]
gi|308170017|gb|EFO72054.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
2503V10-D]
gi|311089306|gb|EFQ47737.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2053A-b]
gi|311090739|gb|EFQ49138.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2052A-d]
gi|311091597|gb|EFQ49979.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
2062A-h1]
gi|311093715|gb|EFQ52052.1| RNAse H domain protein, YqgF family [Lactobacillus iners LEAF
3008A-a]
gi|315489588|gb|EFU79222.1| crossover junction endodeoxyribonuclease [Lactobacillus iners
ATCC 55195]
gi|325476236|gb|EGC79399.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
143-D]
gi|325476922|gb|EGC80073.1| RNAse H domain protein, YqgF family [Lactobacillus iners UPII
60-B]
gi|328937388|gb|EGG33810.1| RNAse H domain protein, YqgF family [Lactobacillus iners SPIN
1401G]
gi|348609132|gb|EGY59093.1| Holliday junction resolvase [Lactobacillus sp. 7_1_47FAA]
Length = 143
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNM 90
+LGLDVG+K +GV++ G EVE + D +K + + + QL+ +++V G VV +
Sbjct: 3 LLGLDVGSKTVGVAVSDALGITAQEVETIP-IDESKYNFGMRRVKQLVREYEVSGFVVGL 61
Query: 91 PK 92
PK
Sbjct: 62 PK 63
>gi|322436322|ref|YP_004218534.1| Holliday junction resolvase YqgF [Granulicella tundricola MP5ACTX9]
gi|321164049|gb|ADW69754.1| Holliday junction resolvase YqgF [Granulicella tundricola MP5ACTX9]
Length = 143
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPKE 93
I+ LDVG IG++L G +PL R +++ L +LI KH+V +VV P
Sbjct: 6 IMALDVGKARIGIALTDPLGYTAQPLLTLWRKTRNEDARSLLRLIRKHEVTHLVVGNPLH 65
Query: 94 HHEHVSSF 101
+S F
Sbjct: 66 LSGDLSPF 73
>gi|422849926|ref|ZP_16896602.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G + GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVAELFGLPVDY 93
>gi|393718811|ref|ZP_10338738.1| putative Holliday junction resolvase [Sphingomonas echinoides
ATCC 14820]
Length = 154
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 33 AGLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVN 89
AG ++GLDVG K IG +L + P R K ++ L +LI +V G+V+
Sbjct: 15 AGGRLIGLDVGTKTIGTALCDAGWSFASPALLIRRTKFQKDKLALAELIAAQQVKGIVIG 74
Query: 90 MP 91
+P
Sbjct: 75 LP 76
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|422847739|ref|ZP_16894422.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|422879885|ref|ZP_16926350.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|422883127|ref|ZP_16929576.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|422929730|ref|ZP_16962671.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|422932697|ref|ZP_16965628.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|339614323|gb|EGQ19025.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|339618448|gb|EGQ23046.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
Length = 139
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ P+ + + L +L++++KV V+ +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G + GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGQRVSELFGLPVDY 93
>gi|366090390|ref|ZP_09456756.1| Holliday junction resolvase-like protein [Lactobacillus acidipiscis
KCTC 13900]
Length = 146
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 11/75 (14%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVE--PLTKFDRAKADQE------LPQLIEKHKVLGMVV 88
I+GLDVG+K +GV++ + G + + K D DQE + QL+ K++V V+
Sbjct: 4 IMGLDVGSKTVGVAVSDQLGWTAQGVEIIKIDE---DQEQFGLERVAQLVAKYEVTAFVL 60
Query: 89 NMPKEHHEHVSSFIE 103
+PK + + +E
Sbjct: 61 GLPKNMNNTLGPRVE 75
>gi|337282886|ref|YP_004622357.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|387880481|ref|YP_006310784.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
gi|419799237|ref|ZP_14324598.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|335370479|gb|AEH56429.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|385698440|gb|EIG28801.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|386793929|gb|AFJ26964.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
Length = 139
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + + + L +L+ ++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGTMIAEKFGLPVDY 93
>gi|354558118|ref|ZP_08977374.1| Holliday junction resolvase [Desulfitobacterium metallireducens
DSM 15288]
gi|353548843|gb|EHC18287.1| Holliday junction resolvase [Desulfitobacterium metallireducens
DSM 15288]
Length = 137
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD-QELPQLIEKHKVLGMVVNMPK 92
+ I+GLD G + IGV++ + + R+KA+ EL +LI+K++V +V+ PK
Sbjct: 1 MRIMGLDFGERTIGVAISDELLWTAQGIKTIRRSKAEIDELAELIDKYEVREIVLGYPK 59
>gi|403386929|ref|ZP_10928986.1| Holliday junction resolvase-like protein [Clostridium sp. JC122]
Length = 135
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPK- 92
ILGLDVG++ IGV++ G + +T R + EL ++ +++ V +V +PK
Sbjct: 3 ILGLDVGDRTIGVAISDPLGFTAQGITTIKRKGLEYDMNELMKICDEYSVEKIVSGLPKN 62
Query: 93 ------EHHEHVSSFIEQL 105
E E V F E+L
Sbjct: 63 MNGTVGEQGEKVKQFCEEL 81
>gi|418322677|ref|ZP_12933991.1| RNAse H domain protein, YqgF family [Staphylococcus pettenkoferi
VCU012]
gi|365231124|gb|EHM72183.1| RNAse H domain protein, YqgF family [Staphylococcus pettenkoferi
VCU012]
Length = 142
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLT--KFDRAKAD---QELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ G + L + D D ++L +I+K KV +++ +P
Sbjct: 6 IIGLDVGSKTVGVAISDLMGWTAQGLDTLRIDEENGDLGIEKLVDIIDKEKVGTVIIGLP 65
Query: 92 KEHHEHV 98
K + +
Sbjct: 66 KNMNNSI 72
>gi|170746909|ref|YP_001753169.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
gi|170653431|gb|ACB22486.1| Holliday junction resolvase YqgF [Methylobacterium radiotolerans
JCM 2831]
Length = 170
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNM 90
G ++G+D+G K IG++L PL R K Q L L +H V G+VV +
Sbjct: 16 GARLIGIDLGTKTIGLALSDLGRQIATPLETIRRVKFTPDAQRLAALCRQHAVGGLVVGL 75
Query: 91 P 91
P
Sbjct: 76 P 76
>gi|116493009|ref|YP_804744.1| Holliday junction resolvase-like protein [Pediococcus pentosaceus
ATCC 25745]
gi|421895100|ref|ZP_16325578.1| putative Holliday junction resolvase [Pediococcus pentosaceus
IE-3]
gi|122265527|sp|Q03ES0.1|RUVX_PEDPA RecName: Full=Putative Holliday junction resolvase
gi|116103159|gb|ABJ68302.1| RNase H-like ribonuclease [Pediococcus pentosaceus ATCC 25745]
gi|385272020|emb|CCG90950.1| putative Holliday junction resolvase [Pediococcus pentosaceus
IE-3]
Length = 146
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++G+DVG++ +G+S+ + G E+ P+ + + + + +L++++ V+G V+ +P
Sbjct: 3 LMGMDVGSRTVGISVSDQLGWTAQGVEIVPINEDEEIFGIERVKELVKEYDVVGFVLGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|332523405|ref|ZP_08399657.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
gi|332314669|gb|EGJ27654.1| RNAse H domain protein, YqgF family [Streptococcus porcinus str.
Jelinkova 176]
Length = 139
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + ++A L +L+ ++ V VV +P
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDNQAFGFDRLSELVAQYDVSQFVVGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|428775393|ref|YP_007167180.1| Holliday junction resolvase YqgF [Halothece sp. PCC 7418]
gi|428689672|gb|AFZ42966.1| Holliday junction resolvase YqgF [Halothece sp. PCC 7418]
Length = 156
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQLIE---KHKVLGMVVNMP 91
L +LGLD+G K IG++ G P+ +R ++ QLI+ K +V +V+ MP
Sbjct: 5 LSVLGLDIGKKRIGIAGCDGTGLIATPIMTLERTGFTDDVEQLIDLIAKREVTLLVIGMP 64
>gi|419776842|ref|ZP_14302761.1| RNAse H domain protein, YqgF family [Streptococcus intermedius
SK54]
gi|423071691|ref|ZP_17060464.1| Holliday junction resolvase [Streptococcus intermedius F0413]
gi|424788670|ref|ZP_18215420.1| hypothetical protein D593_1856 [Streptococcus intermedius BA1]
gi|355363465|gb|EHG11202.1| Holliday junction resolvase [Streptococcus intermedius F0413]
gi|383845527|gb|EID82930.1| RNAse H domain protein, YqgF family [Streptococcus intermedius
SK54]
gi|422112450|gb|EKU16237.1| hypothetical protein D593_1856 [Streptococcus intermedius BA1]
Length = 139
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 17/69 (24%)
Query: 35 LGILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKV 83
+ ++GLDVG+K +GV++ F G E+ P+ + FDR L +L+ ++KV
Sbjct: 1 MRMMGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKEEFGFDR------LSELVREYKV 54
Query: 84 LGMVVNMPK 92
VV +PK
Sbjct: 55 EKFVVGLPK 63
>gi|434391867|ref|YP_007126814.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
gi|428263708|gb|AFZ29654.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
Length = 165
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 14 PSHLFKFCGRVEKQCVGENAG----LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK 69
SHL R EN + LGLD+G K IGV+ G LT +R
Sbjct: 4 ASHLHVTSNRQTVDSAMENISRRRFISALGLDIGRKRIGVAGCDGTGLIASGLTTIERKS 63
Query: 70 ADQELPQ---LIEKHKVLGMVVNMP 91
D +L Q L+++ +V +VV +P
Sbjct: 64 FDLDLAQLKSLVQERRVQVLVVGLP 88
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 38 LGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQELPQ---LIEKHKVLGMVVNMPK 92
LG+DVG +GV++ G PL RA+ + +L + L+ +H+V ++V P+
Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPR 143
>gi|148543770|ref|YP_001271140.1| Holliday junction resolvase-like protein [Lactobacillus reuteri
DSM 20016]
gi|184153176|ref|YP_001841517.1| hypothetical protein LAR_0521 [Lactobacillus reuteri JCM 1112]
gi|194468335|ref|ZP_03074321.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227363250|ref|ZP_03847382.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227544202|ref|ZP_03974251.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|325682142|ref|ZP_08161660.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|338204118|ref|YP_004650263.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|423335903|ref|ZP_17313654.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
gi|167012733|sp|A5VIX9.1|RUVX_LACRD RecName: Full=Putative Holliday junction resolvase
gi|226731626|sp|B2G6F5.1|RUVX_LACRJ RecName: Full=Putative Holliday junction resolvase
gi|148530804|gb|ABQ82803.1| Holliday junction resolvase YqgF [Lactobacillus reuteri DSM
20016]
gi|154705538|gb|ABS84195.1| holliday junction resolvase-like protein [Lactobacillus reuteri]
gi|183224520|dbj|BAG25037.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|194453188|gb|EDX42086.1| Holliday junction resolvase YqgF [Lactobacillus reuteri 100-23]
gi|227071706|gb|EEI09997.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM2-3]
gi|227185838|gb|EEI65909.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
CF48-3A]
gi|324978786|gb|EGC15735.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
MM4-1A]
gi|336449358|gb|AEI57973.1| crossover junction endodeoxyribonuclease [Lactobacillus reuteri
SD2112]
gi|337729106|emb|CCC04229.1| conserved hypothetical protein [Lactobacillus reuteri ATCC 53608]
Length = 147
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +G+S+ + E+ P+ + + + +L++K +V G V+ +P
Sbjct: 3 LMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|15902220|ref|NP_357770.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
R6]
gi|116515819|ref|YP_815700.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
D39]
gi|148983593|ref|ZP_01816912.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|148987930|ref|ZP_01819393.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|148992772|ref|ZP_01822415.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|148996617|ref|ZP_01824335.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|149001702|ref|ZP_01826675.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|149005945|ref|ZP_01829674.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|149011064|ref|ZP_01832369.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|168483832|ref|ZP_02708784.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|168490343|ref|ZP_02714542.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|168492149|ref|ZP_02716292.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|168576377|ref|ZP_02722260.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|169834458|ref|YP_001693728.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Hungary19A-6]
gi|182683176|ref|YP_001834923.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CGSP14]
gi|225853803|ref|YP_002735315.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
JJA]
gi|225855961|ref|YP_002737472.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
P1031]
gi|225858051|ref|YP_002739561.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
70585]
gi|225860238|ref|YP_002741747.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|237649736|ref|ZP_04523988.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974]
gi|237821434|ref|ZP_04597279.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
CCRI 1974M2]
gi|298255974|ref|ZP_06979560.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
str. Canada MDR_19A]
gi|303255107|ref|ZP_07341183.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|303259248|ref|ZP_07345226.1| hypothetical protein CGSSp9vBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|303263331|ref|ZP_07349254.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|307066873|ref|YP_003875839.1| putative endonuclease [Streptococcus pneumoniae AP200]
gi|342163006|ref|YP_004767645.1| Holliday junction resolvase-like protein [Streptococcus
pseudopneumoniae IS7493]
gi|383938913|ref|ZP_09992110.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
SK674]
gi|418088002|ref|ZP_12725167.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47033]
gi|418104272|ref|ZP_12741332.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44500]
gi|418136265|ref|ZP_12773109.1| hypothetical protein SPAR24_0161 [Streptococcus pneumoniae GA11663]
gi|418147679|ref|ZP_12784446.1| hypothetical protein SPAR34_0169 [Streptococcus pneumoniae GA13856]
gi|418156439|ref|ZP_12793158.1| hypothetical protein SPAR41_0217 [Streptococcus pneumoniae GA16833]
gi|418172602|ref|ZP_12809216.1| hypothetical protein SPAR67_0203 [Streptococcus pneumoniae GA41277]
gi|418201515|ref|ZP_12837947.1| hypothetical protein SPAR115_0231 [Streptococcus pneumoniae
GA52306]
gi|418220144|ref|ZP_12846801.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47751]
gi|418228941|ref|ZP_12855552.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP01]
gi|418973593|ref|ZP_13521572.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|419485704|ref|ZP_14025471.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44128]
gi|419511659|ref|ZP_14051293.1| hypothetical protein SPAR149_0205 [Streptococcus pneumoniae
GA05578]
gi|419533646|ref|ZP_14073154.1| hypothetical protein SPAR46_0190 [Streptococcus pneumoniae GA17457]
gi|421205619|ref|ZP_15662686.1| hypothetical protein AMCSP20_000178 [Streptococcus pneumoniae
2090008]
gi|421306403|ref|ZP_15757050.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60132]
gi|421310903|ref|ZP_15761516.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58981]
gi|444390643|ref|ZP_21188558.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS70012]
gi|444392277|ref|ZP_21190014.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS81218]
gi|444404681|ref|ZP_21201627.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0009]
gi|444409096|ref|ZP_21205696.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0076]
gi|444414088|ref|ZP_21210394.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0199]
gi|444417585|ref|ZP_21213615.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0360]
gi|444421778|ref|ZP_21217448.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0446]
gi|32130028|sp|Q8DRE2.1|RUVX_STRR6 RecName: Full=Putative Holliday junction resolvase
gi|122279414|sp|Q04MP8.1|RUVX_STRP2 RecName: Full=Putative Holliday junction resolvase
gi|226695306|sp|B1I8I5.1|RUVX_STRPI RecName: Full=Putative Holliday junction resolvase
gi|226695307|sp|B2IS28.1|RUVX_STRPS RecName: Full=Putative Holliday junction resolvase
gi|254767527|sp|C1CAK0.1|RUVX_STRP7 RecName: Full=Putative Holliday junction resolvase
gi|254767529|sp|C1CBZ4.1|RUVX_STRZJ RecName: Full=Putative Holliday junction resolvase
gi|254767530|sp|C1CI84.1|RUVX_STRZP RecName: Full=Putative Holliday junction resolvase
gi|254767531|sp|C1CP75.1|RUVX_STRZT RecName: Full=Putative Holliday junction resolvase
gi|15457719|gb|AAK98980.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076395|gb|ABJ54115.1| conserved hypothetical protein TIGR00250 [Streptococcus pneumoniae
D39]
gi|147757192|gb|EDK64231.1| hypothetical protein CGSSp11BS70_07975 [Streptococcus pneumoniae
SP11-BS70]
gi|147760160|gb|EDK67149.1| anaerobic ribonucleoside triphosphate reductase [Streptococcus
pneumoniae SP14-BS69]
gi|147762301|gb|EDK69262.1| hypothetical protein CGSSp18BS74_07200 [Streptococcus pneumoniae
SP18-BS74]
gi|147764700|gb|EDK71630.1| hypothetical protein CGSSp19BS75_11428 [Streptococcus pneumoniae
SP19-BS75]
gi|147923740|gb|EDK74852.1| hypothetical protein CGSSp3BS71_05664 [Streptococcus pneumoniae
SP3-BS71]
gi|147926394|gb|EDK77467.1| hypothetical protein CGSSp6BS73_10471 [Streptococcus pneumoniae
SP6-BS73]
gi|147928498|gb|EDK79513.1| hypothetical protein CGSSp9BS68_03488 [Streptococcus pneumoniae
SP9-BS68]
gi|168996960|gb|ACA37572.1| conserved hypothetical protein [Streptococcus pneumoniae
Hungary19A-6]
gi|172042909|gb|EDT50955.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gi|182628510|gb|ACB89458.1| hypothetical protein SPCG_0206 [Streptococcus pneumoniae CGSP14]
gi|183571311|gb|EDT91839.1| conserved hypothetical protein [Streptococcus pneumoniae SP195]
gi|183573647|gb|EDT94175.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC0288-04]
gi|183577826|gb|EDT98354.1| conserved hypothetical protein [Streptococcus pneumoniae MLV-016]
gi|225721840|gb|ACO17694.1| conserved hypothetical protein [Streptococcus pneumoniae 70585]
gi|225722223|gb|ACO18076.1| conserved hypothetical protein [Streptococcus pneumoniae JJA]
gi|225725306|gb|ACO21158.1| conserved hypothetical protein [Streptococcus pneumoniae P1031]
gi|225727488|gb|ACO23339.1| conserved hypothetical protein [Streptococcus pneumoniae
Taiwan19F-14]
gi|302597937|gb|EFL65007.1| Holliday junction resolvase-like protein [Streptococcus pneumoniae
BS455]
gi|302639666|gb|EFL70123.1| hypothetical protein CGSSpBS293_02607 [Streptococcus pneumoniae
SP-BS293]
gi|302647104|gb|EFL77328.1| hypothetical protein CGSSpBS397_03156 [Streptococcus pneumoniae
BS397]
gi|306408410|gb|ADM83837.1| predicted endonuclease [Streptococcus pneumoniae AP200]
gi|341932888|gb|AEL09785.1| Holliday junction resolvase-like protein [Streptococcus
pseudopneumoniae IS7493]
gi|353755679|gb|EHD36282.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47033]
gi|353778706|gb|EHD59172.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44500]
gi|353813877|gb|EHD94104.1| hypothetical protein SPAR34_0169 [Streptococcus pneumoniae GA13856]
gi|353825716|gb|EHE05880.1| hypothetical protein SPAR41_0217 [Streptococcus pneumoniae GA16833]
gi|353839301|gb|EHE19375.1| hypothetical protein SPAR67_0203 [Streptococcus pneumoniae GA41277]
gi|353868991|gb|EHE48874.1| hypothetical protein SPAR115_0231 [Streptococcus pneumoniae
GA52306]
gi|353877941|gb|EHE57780.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA47751]
gi|353891379|gb|EHE71135.1| putative Holliday junction resolvase [Streptococcus pneumoniae
EU-NP01]
gi|353903323|gb|EHE78847.1| hypothetical protein SPAR24_0161 [Streptococcus pneumoniae GA11663]
gi|379568608|gb|EHZ33587.1| hypothetical protein SPAR46_0190 [Streptococcus pneumoniae GA17457]
gi|379588613|gb|EHZ53453.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA44128]
gi|379636129|gb|EIA00687.1| hypothetical protein SPAR149_0205 [Streptococcus pneumoniae
GA05578]
gi|383347662|gb|EID25637.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383714254|gb|EID70263.1| RNAse H domain protein, YqgF family [Streptococcus pseudopneumoniae
SK674]
gi|395578040|gb|EJG38568.1| hypothetical protein AMCSP20_000178 [Streptococcus pneumoniae
2090008]
gi|395910113|gb|EJH20987.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA60132]
gi|395913863|gb|EJH24712.1| putative Holliday junction resolvase [Streptococcus pneumoniae
GA58981]
gi|444257106|gb|ELU63444.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS70012]
gi|444263680|gb|ELU69831.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PCS81218]
gi|444276382|gb|ELU81944.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0009]
gi|444280309|gb|ELU85680.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0076]
gi|444283390|gb|ELU88588.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0199]
gi|444283501|gb|ELU88698.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0360]
gi|444288987|gb|ELU93875.1| RNAse H domain protein, YqgF family [Streptococcus pneumoniae
PNI0446]
Length = 139
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 21/97 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ + + FDR K +L++ +KV
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVK------ELVDTYKVER 56
Query: 86 MVVNMPKEHHEHVSSFIE--QLDGNEI--YRGLPFCY 118
VV +PK + +E Q G ++ + GLP Y
Sbjct: 57 FVVGLPKNMNNTSGPRVEASQAYGAKLEEFFGLPVDY 93
>gi|339448749|ref|ZP_08652305.1| Holliday junction resolvase-like protein [Lactobacillus
fructivorans KCTC 3543]
Length = 144
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G E+ + + ++ + +LI+K+ V G+V+ +P
Sbjct: 3 LMGLDVGSKTVGVAMSDALGWTSQGIEIVKINEDEKEFGLDRIGELIKKYDVNGVVIGLP 62
Query: 92 KEHHEHVSSFIE 103
K + +E
Sbjct: 63 KNMNNTSGPRVE 74
>gi|398818110|ref|ZP_10576709.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
gi|398028908|gb|EJL22411.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
Length = 138
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
++GLDVG+K IGV++ G VE + + + K L +L+ ++++ VV +PK
Sbjct: 4 LMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDLARLSELVSQYQIGAFVVGLPK 62
>gi|312870461|ref|ZP_07730581.1| RNAse H domain protein, YqgF family [Lactobacillus oris
PB013-T2-3]
gi|417885124|ref|ZP_12529283.1| RNAse H domain protein, YqgF family [Lactobacillus oris F0423]
gi|311094018|gb|EFQ52342.1| RNAse H domain protein, YqgF family [Lactobacillus oris
PB013-T2-3]
gi|341596420|gb|EGS39023.1| RNAse H domain protein, YqgF family [Lactobacillus oris F0423]
Length = 147
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
+LGLDVG+K +G+++ + E+ P+ + + + +L++K +V G V+ +P
Sbjct: 3 LLGLDVGSKTVGIAVSDPLGWTAQAVEIIPIDEDEEVFGLDRVAELVDKEQVAGFVLGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase [Paenibacillus polymyxa SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|392304268|emb|CCI70631.1| putative Holliday junction resolvase [Paenibacillus polymyxa M1]
Length = 138
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE---LPQLIEKHKVLGMVVNMPK 92
++GLD G++ IGV++ G + L +R D E + L+ +H++ +VV +PK
Sbjct: 3 VMGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPK 61
>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
gi|167012754|sp|A8GN18.1|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
Length = 154
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL---TKFDRAKADQELPQLIEKHKVLGMVVNMPKE 93
++ +D G+K +G++L + + PL T+ ++ L ++EK+KV G+V+ MP +
Sbjct: 19 LIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLSIVEKYKVCGVVIGMPID 78
Query: 94 HHEHVS 99
V+
Sbjct: 79 MSGAVT 84
>gi|335031276|ref|ZP_08524723.1| RNAse H domain protein, YqgF family [Streptococcus anginosus SK52 =
DSM 20563]
gi|333770098|gb|EGL47164.1| RNAse H domain protein, YqgF family [Streptococcus anginosus SK52 =
DSM 20563]
Length = 139
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ P+ + FDR L +L +++KV
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDR------LSELAKEYKVEK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 37 ILGLDVGNKYIGVSLFKRHG---NEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMPK 92
++GLDVG+K IGV++ G VE + + + K L +L+ ++++ VV +PK
Sbjct: 4 LMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPK 62
>gi|373465641|ref|ZP_09557096.1| RNAse H domain protein, YqgF family [Lactobacillus kisonensis
F0435]
gi|371759891|gb|EHO48598.1| RNAse H domain protein, YqgF family [Lactobacillus kisonensis
F0435]
Length = 144
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G E+ P+ + + + +L+ +++V G VV +P
Sbjct: 3 LMGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENEQFGLDRVAELVSQYEVNGFVVGLP 62
Query: 92 KEHHEHV 98
K + +
Sbjct: 63 KNMNNSL 69
>gi|377556918|ref|ZP_09786592.1| Putative Holliday junction resolvase [Lactobacillus gastricus
PS3]
gi|376166994|gb|EHS85861.1| Putative Holliday junction resolvase [Lactobacillus gastricus
PS3]
Length = 146
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
+LGLDVG+K +GV+ + E+ P+ + + + + +L+++ +V G V+ +P
Sbjct: 3 LLGLDVGSKTVGVAQSDPLGWTAQAVEIIPINETEEVFGLERIAELVKERQVAGFVIGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|253681805|ref|ZP_04862602.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|416352942|ref|ZP_11681424.1| Holliday junction resolvase-like protein [Clostridium botulinum C
str. Stockholm]
gi|253561517|gb|EES90969.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
gi|338195673|gb|EGO87925.1| Holliday junction resolvase-like protein [Clostridium botulinum C
str. Stockholm]
Length = 135
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVVNMPKE 93
ILGLDVGNK IGV++ G + +T R + + QE+ ++ ++K+ ++ +PK
Sbjct: 3 ILGLDVGNKTIGVAVSDPLGFTAQGITTVHRKELEEDIQEIDKICHEYKIELIISGLPKN 62
Query: 94 HHEHVSSFIEQLDGNEIYRGLPFCYFQKTK 123
+ + G + + L FC K K
Sbjct: 63 MNGTI--------GEQGEKVLEFCDVLKEK 84
>gi|417918129|ref|ZP_12561682.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
gi|342829120|gb|EGU63481.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
Length = 139
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ F G E+ + + + + L +L+ ++KV VV +P
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLP 62
Query: 92 KEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
K + +E Q G I GLP Y
Sbjct: 63 KNMNNTSGPRVEASQAYGAMISEKFGLPVDY 93
>gi|421490151|ref|ZP_15937525.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
gi|400373556|gb|EJP26484.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
Length = 136
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 17/77 (22%)
Query: 38 LGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLGM 86
+GLDVG+K +GV++ F G E+ P+ + FDR L +L++++KV
Sbjct: 1 MGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDR------LSELVKEYKVDKF 54
Query: 87 VVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 55 VVGLPKNMNNTSGPRVE 71
>gi|419767612|ref|ZP_14293762.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK579]
gi|383352976|gb|EID30606.1| RNAse H domain protein, YqgF family [Streptococcus mitis SK579]
Length = 139
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 21/97 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ + + FDR K +L++ +KV
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGQFGFDRVK------ELVDAYKVER 56
Query: 86 MVVNMPKEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
VV +PK + +E Q G ++ GLP Y
Sbjct: 57 FVVGLPKNMNNTSGPRVEASQAYGTKLEELFGLPVDY 93
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNMPKE 93
ILGLDVG+ +IGV++ +PL R A +++ ++I+++ V +VV +PK
Sbjct: 4 ILGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPKN 63
Query: 94 -------HHEHVSSFIEQL 105
E V F E+L
Sbjct: 64 MNNTIGPQSEKVIKFAEKL 82
>gi|399924175|ref|ZP_10781533.1| Holliday junction resolvase YqgF [Peptoniphilus rhinitidis 1-13]
Length = 138
Score = 34.7 bits (78), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNMPKE 93
+LGLDVG+ +IGV++ +PLT R A ++ +I+++ V +VV +PK
Sbjct: 4 VLGLDVGDVWIGVAISDPLMITAQPLTTIKRESNKIAYDKIHDIIKENNVEKVVVGLPKN 63
Query: 94 -------HHEHVSSFIEQL 105
E V F E+L
Sbjct: 64 MNNTIGPQSEKVIKFAEKL 82
>gi|392429478|ref|YP_006470492.1| Holliday junction resolvase-like protein [Streptococcus
intermedius JTH08]
gi|391758627|dbj|BAM24244.1| Holliday junction resolvase-like protein [Streptococcus
intermedius JTH08]
Length = 136
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 17/66 (25%)
Query: 38 LGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLGM 86
+GLDVG+K +GV++ F G E+ P+ + FDR L +L+ ++KV
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKEEFGFDR------LSELVREYKVEKF 54
Query: 87 VVNMPK 92
VV +PK
Sbjct: 55 VVGLPK 60
>gi|227432459|ref|ZP_03914446.1| crossover junction endodeoxyribonuclease [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227351780|gb|EEJ42019.1| crossover junction endodeoxyribonuclease [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 143
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
ILGLDVG++ +GVS+ + G E+ + + D+ L ++I++ G+V+ +P
Sbjct: 3 ILGLDVGSRTVGVSISDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGLP 62
Query: 92 KEHH 95
K +
Sbjct: 63 KNMN 66
>gi|359771810|ref|ZP_09275253.1| putative enoyl-CoA hydratase [Gordonia effusa NBRC 100432]
gi|359311057|dbj|GAB18031.1| putative enoyl-CoA hydratase [Gordonia effusa NBRC 100432]
Length = 273
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 72 QELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGN 108
Q L QL+E + + + ++H E VS+FIE+ DGN
Sbjct: 233 QSLDQLLEMSATMQAIAHHTEDHREAVSAFIERRDGN 269
>gi|118597223|sp|Q1JEI0.1|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVV 88
I+GLDVG+K +GV++ F G E+ K D KA+ L +L+++++V V+
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEI---IKIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 89 NMPKEHHEHVSSFIEQ--LDGNEIYR--GLPFCY 118
+PK + S ++ GN I GLP Y
Sbjct: 60 GLPKNMNNTNSPRVDASITYGNHIEHLFGLPVHY 93
>gi|220923238|ref|YP_002498540.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
gi|219947845|gb|ACL58237.1| Holliday junction resolvase YqgF [Methylobacterium nodulans ORS
2060]
Length = 163
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 34 GLGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAK---ADQELPQLIEKHKVLGMVVNM 90
G +LGLD+G K IG++L PL R K Q+L + +H V G+V+ +
Sbjct: 17 GARLLGLDLGTKTIGLALSDVGRRIASPLETIRRVKFTPDAQKLAGIARQHGVGGLVIGL 76
Query: 91 P 91
P
Sbjct: 77 P 77
>gi|315221498|ref|ZP_07863418.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
gi|315189332|gb|EFU23027.1| conserved hypothetical protein TIGR00250 [Streptococcus anginosus
F0211]
Length = 139
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ P+ + FDR L L++++KV
Sbjct: 3 IMGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDR------LNGLVQEYKVDK 56
Query: 86 MVVNMPKEHHEHVSSFIE 103
VV +PK + +E
Sbjct: 57 FVVGLPKNMNNTSGPRVE 74
>gi|405761610|ref|YP_006702206.1| regulatory protein Spx [Streptococcus pneumoniae SPNA45]
gi|404278500|emb|CCM09120.1| regulatory protein Spx [Streptococcus pneumoniae SPNA45]
Length = 228
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 21/104 (20%)
Query: 30 GENAGLGILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLI 78
G + + I+GLDVG+K +GV++ F G E+ + + FDR K +L+
Sbjct: 85 GVDLPMRIMGLDVGSKTVGVAISDPLGFTAQGLEIIQINEEQGKFGFDRVK------ELV 138
Query: 79 EKHKVLGMVVNMPKEHHEHVSSFIE--QLDGNEI--YRGLPFCY 118
+ +KV VV +PK + +E Q G ++ + GLP Y
Sbjct: 139 DTYKVERFVVGLPKNMNNTSGPRVEASQAYGAKLEEFFGLPVDY 182
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM
8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM
8271]
Length = 134
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQ-ELPQLIEKHKVLGMVVNMPK 92
++GLD+G K IGV++ +PL R++ +Q EL +I++++V +VV PK
Sbjct: 3 VMGLDLGEKTIGVAVSDLLMLTAQPLLVIKRSEKEQEELAGIIKEYEVDTIVVGYPK 59
>gi|406837048|ref|ZP_11096642.1| Holliday junction resolvase-like protein [Lactobacillus vini DSM
20605]
Length = 146
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
++GLDVG+K +GV++ + G E+ P+ + ++ + + L +K+++ G V+ +P
Sbjct: 5 LMGLDVGSKTVGVAVSDLLGWTAQGVEIIPIDEDNQQFGLERIKTLAKKYQIGGFVIGLP 64
Query: 92 KEHH 95
K +
Sbjct: 65 KNMN 68
>gi|381336151|ref|YP_005173926.1| Holliday junction resolvase-like protein [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356644117|gb|AET29960.1| Holliday junction resolvase-like protein [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 143
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKADQELPQLIEKHKVLGMVVNMP 91
ILGLDVG++ +GVS+ + G E+ + + D+ L ++I++ G+V+ +P
Sbjct: 3 ILGLDVGSRTVGVSVSDPMGWTAQGVEIIRINEDDKEFGIDRLGEIIKEKNATGVVLGLP 62
Query: 92 KEHH 95
K +
Sbjct: 63 KNMN 66
>gi|161506985|ref|YP_001576939.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
gi|172048187|sp|A8YTJ2.1|RUVX_LACH4 RecName: Full=Putative Holliday junction resolvase
gi|160347974|gb|ABX26648.1| putative DNA recombination protein [Lactobacillus helveticus DPC
4571]
Length = 142
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL--TKFDRAKAD---QELPQLIEKHKVLGMVVNMP 91
+LGLD+G+K +GVS+ G + L K D K + + L +L+ +++V G V+ +P
Sbjct: 3 LLGLDIGSKTVGVSVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGLP 62
Query: 92 K 92
K
Sbjct: 63 K 63
>gi|421147482|ref|ZP_15607169.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GB00112]
gi|401685836|gb|EJS81829.1| Holliday junction resolvase-like protein [Streptococcus agalactiae
GB00112]
Length = 139
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 21/97 (21%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTK------FDRAKADQELPQLIEKHKVLG 85
I+GLDVG+K +GV++ F G E+ + + FDR L +L++++KV
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDR------LAELVKEYKVDK 56
Query: 86 MVVNMPKEHHEHVSSFIE--QLDGNEIYR--GLPFCY 118
VV +PK + +E Q+ G++I LP Y
Sbjct: 57 FVVGLPKNMNNTSGPRVEASQVYGDKITELFNLPVEY 93
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01.1|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes
NZ131]
Length = 139
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVV 88
I+GLDVG+K +GV++ F G E+ K D KA+ L +L+++++V V+
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEI---IKIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 89 NMPK 92
+PK
Sbjct: 60 GLPK 63
>gi|402703765|ref|ZP_10851744.1| Holliday junction resolvase-like protein [Rickettsia helvetica
C9P9]
Length = 154
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL---TKFDRAKADQELPQLIEKHKVLGMVVNMP-- 91
++ +D G+K +G++L + + PL T+ ++ L +IEK+KV G+V+ +P
Sbjct: 19 LIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVVIGLPID 78
Query: 92 -----KEHHEHVSSFIEQL 105
E V F E+L
Sbjct: 79 MSGAVTEQTNIVMKFAEEL 97
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|417857668|ref|ZP_12502727.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
gi|54039589|sp|P67495.1|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3.1|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498.1|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0.1|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9.1|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0.1|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5.1|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|342179318|sp|P0DF52.1|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|342179319|sp|P0DF53.1|RUVX_STRPQ RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes
MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|387934623|gb|EIK42736.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
Length = 139
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 11/64 (17%)
Query: 37 ILGLDVGNKYIGVSL-----FKRHGNEVEPLTKFDRAKAD---QELPQLIEKHKVLGMVV 88
I+GLDVG+K +GV++ F G E+ K D KA+ L +L+++++V V+
Sbjct: 3 IMGLDVGSKTVGVAISDPLGFTAQGLEI---IKIDEEKAEFGFTRLEELVKQYQVEQFVI 59
Query: 89 NMPK 92
+PK
Sbjct: 60 GLPK 63
>gi|339634214|ref|YP_004725855.1| Holliday junction resolvase-like protein [Weissella koreensis
KACC 15510]
gi|420161851|ref|ZP_14668613.1| crossover junction endodeoxyribonuclease [Weissella koreensis
KCTC 3621]
gi|338854010|gb|AEJ23176.1| Holliday junction resolvase-like protein [Weissella koreensis
KACC 15510]
gi|394744858|gb|EJF33777.1| crossover junction endodeoxyribonuclease [Weissella koreensis
KCTC 3621]
Length = 152
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPLTKFDRAKADQE------LPQLIEKHKVLGMVV 88
+ I GLDVG+K +GV++ G + L + R D+E + +L+ KHK G ++
Sbjct: 1 MSIFGLDVGSKTVGVAVSDPMGWTAQGL-EIIRINEDEEEFGIERMKELVLKHKPTGFLL 59
Query: 89 NMPKEHHEHV 98
+PK + +
Sbjct: 60 GLPKNMNNSI 69
>gi|393200233|ref|YP_006462075.1| endonuclease [Solibacillus silvestris StLB046]
gi|406667420|ref|ZP_11075178.1| Putative Holliday junction resolvase [Bacillus isronensis B3W22]
gi|327439564|dbj|BAK15929.1| predicted endonuclease [Solibacillus silvestris StLB046]
gi|405384788|gb|EKB44229.1| Putative Holliday junction resolvase [Bacillus isronensis B3W22]
Length = 138
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL--TKFDRAKAD---QELPQLIEKHKVLGMVVNMP 91
I+GLDVG+K +GV++ G + + K D A + + + +L+++H V VV P
Sbjct: 3 IMGLDVGSKTVGVAISDALGWTAQGIETIKIDEAAGEFGIERINELVKEHNVTEFVVGYP 62
Query: 92 KEHHEHV 98
K + +
Sbjct: 63 KNMNNTI 69
>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 156
Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 37 ILGLDVGNKYIGVSLFKRHGNEVEPL---TKFDRAKADQELPQLIEKHKVLGMVVNMP-- 91
++ +D G+K +G++L + + PL T+ ++ L +IEK+KV G+V+ +P
Sbjct: 19 LIAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVVIGLPID 78
Query: 92 -----KEHHEHVSSFIEQL 105
E V F E+L
Sbjct: 79 MSGAVTEQTNIVMKFAEEL 97
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.142 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,071,195,863
Number of Sequences: 23463169
Number of extensions: 84936612
Number of successful extensions: 179881
Number of sequences better than 100.0: 287
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 179742
Number of HSP's gapped (non-prelim): 289
length of query: 123
length of database: 8,064,228,071
effective HSP length: 89
effective length of query: 34
effective length of database: 5,976,006,030
effective search space: 203184205020
effective search space used: 203184205020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)