BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033269
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction
          Resolvase
 pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction
          Resolvase
          Length = 150

 Score = 33.5 bits (75), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 35 LGILGLDVGNKYIGVSLFKRHGNEVEPL--TKFDRAKAD---QELPQLIEKHKVLGMVVN 89
          L ILGLD+G K +GV+L    G   + +   K + A+ D     L +LI+ + +  +V+ 
Sbjct: 3  LRILGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLG 62

Query: 90 MPKEHHEHV 98
           PK  +  V
Sbjct: 63 FPKNXNGTV 71


>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
 pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
 pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
           Diphosphate From Bacillus Anthracis
 pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
           Diphosphate From Bacillus Anthracis
          Length = 690

 Score = 28.9 bits (63), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 56  GNEVEPLTK-FDRAKADQELPQLIEKHKVLG 85
           GN++E + K  + AKAD++ P LIE    +G
Sbjct: 244 GNDIEAIAKAIEEAKADEKRPTLIEVRTTIG 274


>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
           Cytidylytransferase From Streptococcus Pneumoniae (Licc)
 pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
           Cytidylytransferase From Streptococcus Pneumoniae (Licc)
 pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
           Cytidylytransferase From Streptococcus Pneumoniae (Licc)
 pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
           Cytidylytransferase From Streptococcus Pneumoniae (Licc)
          Length = 254

 Score = 27.7 bits (60), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 63  TKFDRAKADQELPQLIEKHKVLGMVV-----NMPKEHHEHVSSFIEQLDGNEIY 111
             F  A   +++   I+K  V G  V     NM K++ + +  ++E+L+GN IY
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIY 235


>pdb|3EZ0|A Chain A, Crystal Structure Of Protein Of Unknown Function With
           Ferritin-Like Fold (Yp_832262.1) From Arthrobacter Sp.
           Fb24 At 2.33 A Resolution
 pdb|3EZ0|B Chain B, Crystal Structure Of Protein Of Unknown Function With
           Ferritin-Like Fold (Yp_832262.1) From Arthrobacter Sp.
           Fb24 At 2.33 A Resolution
 pdb|3EZ0|C Chain C, Crystal Structure Of Protein Of Unknown Function With
           Ferritin-Like Fold (Yp_832262.1) From Arthrobacter Sp.
           Fb24 At 2.33 A Resolution
 pdb|3EZ0|D Chain D, Crystal Structure Of Protein Of Unknown Function With
           Ferritin-Like Fold (Yp_832262.1) From Arthrobacter Sp.
           Fb24 At 2.33 A Resolution
          Length = 225

 Score = 26.9 bits (58), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 62  LTKFDRAKADQELPQLIEKHKVLGMVVNMPKEHHEHVSSFIEQLDGNEIYRGLPF 116
           L+ F+R  AD      +    VLG +  +   H+E VS+ +E    +     LPF
Sbjct: 28  LSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAXGIDAEDAXLPF 82


>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
           Cytidylytransferase From Streptococcus Pneumoniae (Licc)
          Length = 254

 Score = 25.0 bits (53), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 63  TKFDRAKADQELPQLIEKHKVLGMVV-----NMPKEHHEHVSSFIEQLDGNEIY 111
             F  A   +++   I+K  V G  V     N  K++ + +  ++E+L+GN IY
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNXVKDNIKELDVYVEELEGNSIY 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.142    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,117,477
Number of Sequences: 62578
Number of extensions: 168213
Number of successful extensions: 481
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)