BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033270
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
Length = 123
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/123 (93%), Positives = 119/123 (96%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR+KVHELR K+K +LLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1 MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
ISQKQK ALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQ SLKTEREKK+EMYFPMRKYA
Sbjct: 61 ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120
Query: 121 IKV 123
IKV
Sbjct: 121 IKV 123
>sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2
SV=1
Length = 123
Score = 221 bits (564), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/123 (91%), Positives = 118/123 (95%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR+KVHELR KSKTDL NQLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
ISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120
Query: 121 IKV 123
IKV
Sbjct: 121 IKV 123
>sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis thaliana GN=RPL35A PE=1
SV=1
Length = 123
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/123 (91%), Positives = 118/123 (95%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR+KVHELR KSK+DL NQLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 121 IKV 123
IKV
Sbjct: 121 IKV 123
>sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2
SV=1
Length = 123
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/123 (90%), Positives = 116/123 (94%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR+KVHELR KSK DL QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
ISQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK+EMYFP+RKYA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 121 IKV 123
IKV
Sbjct: 121 IKV 123
>sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis thaliana GN=RPL35C PE=1
SV=1
Length = 123
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/123 (88%), Positives = 116/123 (94%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR+KVHELR KSK+DL QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
SQKQK+ALREAYKNKK LPLDLRPKKTRAIRRRLTKHQASLKTEREKK++MYFP+RKYA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120
Query: 121 IKV 123
IKV
Sbjct: 121 IKV 123
>sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicus GN=Rpl35 PE=1 SV=3
Length = 123
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 101/122 (82%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+ LKT++++++E +P+RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1
Length = 123
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 101/122 (82%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRLTKH+ LKT++++++E +P+RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLTKHEEKLKTKKQQRKERLYPLRKYA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus GN=RPL35 PE=2 SV=3
Length = 123
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 102/122 (83%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL+DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E +P+RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q98TF7|RL35_CHICK 60S ribosomal protein L35 OS=Gallus gallus GN=RPL35 PE=2 SV=3
Length = 123
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/122 (64%), Positives = 101/122 (82%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E +P+RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPVRKYA 120
Query: 121 IK 122
IK
Sbjct: 121 IK 122
>sp|P42766|RL35_HUMAN 60S ribosomal protein L35 OS=Homo sapiens GN=RPL35 PE=1 SV=2
Length = 123
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/122 (63%), Positives = 101/122 (82%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E +P+RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q29361|RL35_PIG 60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=2 SV=3
Length = 123
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 102/122 (83%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL+DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLEDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ +LKT++++++E +P+RK+A
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus hannah GN=RPL35 PE=2 SV=3
Length = 123
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 99/123 (80%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ LKT++++++E +P RKYA
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEEGLKTKKQQRKERLYPPRKYA 120
Query: 121 IKV 123
+K
Sbjct: 121 VKA 123
>sp|Q6UZF7|RL35_HIPCM 60S ribosomal protein L35 OS=Hippocampus comes GN=rpl35 PE=2 SV=3
Length = 123
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 101/122 (82%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKNELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ SL+T++++++++ + +RK+A
Sbjct: 61 ITQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q6PBC1|RL35_XENTR 60S ribosomal protein L35 OS=Xenopus tropicalis GN=rpl35 PE=2 SV=3
Length = 123
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 98/122 (80%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRA+RRRL KH+ L+T+++++++ F RK+A
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRALRRRLNKHEEGLRTKKQQRKDRLFSARKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q8JHJ1|RL35_DANRE 60S ribosomal protein L35 OS=Danio rerio GN=rpl35 PE=2 SV=3
Length = 123
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 98/122 (80%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRPKKTRAIRR+LTKH+ +L T++ +++ + +RK+A
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPKKTRAIRRQLTKHEENLMTKKMQRKSRLYSIRKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q90YT4|RL35_ICTPU 60S ribosomal protein L35 OS=Ictalurus punctatus GN=rpl35 PE=2 SV=3
Length = 123
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/122 (60%), Positives = 96/122 (78%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL + DLK EL+ LRVAKVTGGA +KLSKI+VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKHVDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRP+KTRAIRR+LTKH+ L T++ ++R + MRK+A
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPRKTRAIRRQLTKHEQGLMTKKMQRRSRLYSMRKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|Q5DVH6|RL35_PLAFE 60S ribosomal protein L35 OS=Platichthys flesus GN=rpl35 PE=2 SV=3
Length = 123
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 99/122 (81%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA++K +LR K K +LL QL DLK E + LRVAKVTGGA +KL+KI VVR SIA+VLTV
Sbjct: 1 MAKIKARDLRGKKKEELLKQLDDLKNEPSQLRVAKVTGGAASKLTKICVVRKSIARVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ YK KK+ PLDLRP+KTRA+RRRL KH+ SL+T++++++++ + +RK+A
Sbjct: 61 INQTQKENLRKFYKGKKYKPLDLRPRKTRALRRRLNKHEESLRTKKQQRKDLLYSIRKFA 120
Query: 121 IK 122
+K
Sbjct: 121 VK 122
>sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl35 PE=1 SV=1
Length = 122
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 92/120 (76%)
Query: 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
+K ELR +S+ +L QL++L+ ELA LRV K+ GG+ +KLSKIK R IA++LTVI++
Sbjct: 3 LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62
Query: 64 KQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123
+ A REAYKNKK++PLDLR KKTRAIRR LT ++ S KT ++ K+E YFP+RKYA+K
Sbjct: 63 SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKERYFPLRKYALKA 122
>sp|P0CX85|RL35B_YEAST 60S ribosomal protein L35-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL35B PE=1 SV=1
Length = 120
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 92/122 (75%), Gaps = 3/122 (2%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA VK +ELRTKSK L +QL DLK ELA L+V K++ + L KIK VR SIA VLTV
Sbjct: 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTV 57
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS TE+++K+++ FP RKYA
Sbjct: 58 INEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYA 117
Query: 121 IK 122
IK
Sbjct: 118 IK 119
>sp|P0CX84|RL35A_YEAST 60S ribosomal protein L35-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL35A PE=1 SV=1
Length = 120
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 92/122 (75%), Gaps = 3/122 (2%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA VK +ELRTKSK L +QL DLK ELA L+V K++ + L KIK VR SIA VLTV
Sbjct: 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRPS---LPKIKTVRKSIACVLTV 57
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+++Q+ A+R+ YK KK+ P DLR KKTRA+RR LTK +AS TE+++K+++ FP RKYA
Sbjct: 58 INEQQREAVRQLYKGKKYQPKDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYA 117
Query: 121 IK 122
IK
Sbjct: 118 IK 119
>sp|Q8L805|RL35_WHEAT 60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1
Length = 124
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 85/122 (69%), Gaps = 1/122 (0%)
Query: 2 ARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61
+VK EL KSK DL QL +LK EL LR+ KV +KL++I +R SIA+VLTVI
Sbjct: 4 GKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSG-SKLNRIHDIRKSIARVLTVI 62
Query: 62 SQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 121
+ KQ+A LR YKNKK+ PLDLR K+TRAIRRRL+ + S E+ KKR ++FP RK+AI
Sbjct: 63 NAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAI 122
Query: 122 KV 123
K
Sbjct: 123 KA 124
>sp|P34662|RL35_CAEEL 60S ribosomal protein L35 OS=Caenorhabditis elegans GN=rpl-35 PE=3
SV=1
Length = 123
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 89/123 (72%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
M ++K LR + K L +L + K ELA LRV+KVTGGA +KLSKI+VVR +IA++LTV
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
I+Q QK LR+ Y + K+ P+DLR KKTRAIRRRLT H+ SL++ +++ + +RK+A
Sbjct: 61 INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFA 120
Query: 121 IKV 123
+K
Sbjct: 121 VKA 123
>sp|Q54J23|RL35_DICDI 60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3
SV=1
Length = 126
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 2/122 (1%)
Query: 3 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVIS 62
+ K ELRTK+KT LL LK+L+ EL+ LRVA+V P+KL+KI VR +IA+VLTV +
Sbjct: 4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFN 63
Query: 63 QKQKAALREAY--KNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
Q QK LR Y K+ +P DLR KKTRAIRRRLT Q+ + T R K FP R +A
Sbjct: 64 QTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFA 123
Query: 121 IK 122
+K
Sbjct: 124 VK 125
>sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1
Length = 123
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 86/123 (69%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
M ++KV+ELR K+ +LL QL+DLK E A +RV KVT + +KLS+I V+R +IA+VLTV
Sbjct: 1 MEKIKVYELRNKTDAELLKQLEDLKQEYASMRVQKVTVTSTSKLSQIGVIRKAIAKVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
+Q+++ R+ Y +PL++RPK TRA RR LT Q LKT +++K+ FP RKYA
Sbjct: 61 YNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYA 120
Query: 121 IKV 123
+ V
Sbjct: 121 LLV 123
>sp|P0DJ51|RL35_TETTS 60S ribosomal protein L35 OS=Tetrahymena thermophila (strain SB210)
GN=RPL35 PE=1 SV=1
Length = 124
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 85/119 (71%)
Query: 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
V+V +LRT+++ L+ +L L+ EL+ LR+AK+ GG NKL +I +VR +IA+ LT+I++
Sbjct: 5 VRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINE 64
Query: 64 KQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 122
K++ A+++ +K K PLD+R KKTRAIRR+LTK Q + +K+ F +RK+A+K
Sbjct: 65 KRRQAVKDQFKGKSLKPLDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRKFALK 123
>sp|Q4N756|RL35_THEPA 60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1
Length = 123
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 83/123 (67%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
M +++V ELR KS +LL L DLK ELA RV+KVT +KLSKI +VR ++A+VLTV
Sbjct: 1 MEKLRVFELREKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
+Q++K R+ YK PL+LRPK TRA R+ LT Q ++KT +E+KR P RKYA
Sbjct: 61 YNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYA 120
Query: 121 IKV 123
+ V
Sbjct: 121 LLV 123
>sp|Q2VA69|RL36_THELE 60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2
SV=1
Length = 123
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 82/121 (67%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
M +++V ELR KS +LL L DLK ELA RV+KVT +KLSKI +VR ++A+VLTV
Sbjct: 1 MEKLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTV 60
Query: 61 ISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYA 120
+Q++K R+ YK PL+LRPK TRA R+ LT Q ++KT +E+KR P RKYA
Sbjct: 61 YNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYA 120
Query: 121 I 121
+
Sbjct: 121 L 121
>sp|Q4UIF8|RL35_THEAN 60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1
Length = 142
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 81/119 (68%)
Query: 3 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVIS 62
+++V ELR KS +LL L DLK ELA RV+KVT +KLSKI +VR ++A+VLTV +
Sbjct: 22 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYN 81
Query: 63 QKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 121
Q++K R+ YK PL+LRPK TRA R+ LT Q ++KT +E+KR P RKYA+
Sbjct: 82 QRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140
>sp|A6VGZ1|RL29_METM7 50S ribosomal protein L29P OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rpl29p PE=3 SV=1
Length = 71
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA +K E+R S ++ ++ +LK EL V K TGGAP+ KI ++ +IA++LT+
Sbjct: 1 MAILKASEIRELSAEEMKGKIAELKRELMKEGVNKSTGGAPSNPGKISEIKRTIARILTI 60
Query: 61 ISQKQKAA 68
+++K+ A
Sbjct: 61 MNEKEAQA 68
>sp|A4FWB5|RL29_METM5 50S ribosomal protein L29P OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rpl29p PE=3 SV=1
Length = 71
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA +K E+R S ++ ++ +LK EL V K TGGAP+ KI ++ +IA++LT+
Sbjct: 1 MAILKASEIRELSAEEMKGKIAELKRELMKEGVNKSTGGAPSNPGKISEIKRTIARILTI 60
Query: 61 ISQKQKAA 68
+++K+ A
Sbjct: 61 MNEKEAQA 68
>sp|Q0SQF2|RL29_CLOPS 50S ribosomal protein L29 OS=Clostridium perfringens (strain
SM101 / Type A) GN=rpmC PE=3 SV=1
Length = 69
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELRT + DL+ +L DLKAEL LR TG N + +I+ V+ SIAQ+ T+I ++
Sbjct: 5 ELKELRTSNPQDLIKKLGDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTIIREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|Q8XHT1|RL29_CLOPE 50S ribosomal protein L29 OS=Clostridium perfringens (strain 13 /
Type A) GN=rpmC PE=3 SV=1
Length = 69
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELRT + DL+ +L DLKAEL LR TG N + +I+ V+ SIAQ+ T+I ++
Sbjct: 5 ELKELRTSNPQDLIKKLGDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTIIREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|Q0TMQ4|RL29_CLOP1 50S ribosomal protein L29 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=rpmC PE=3 SV=1
Length = 69
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELRT + DL+ +L DLKAEL LR TG N + +I+ V+ SIAQ+ T+I ++
Sbjct: 5 ELKELRTSNPQDLIKKLGDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTIIREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|P54035|RL29_METJA 50S ribosomal protein L29P OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl29p PE=3 SV=1
Length = 70
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA ++ ELR S +L +L +LK EL R +K GAP+ +++ +R +IA++LT+
Sbjct: 1 MAILRADELRGMSMEELKEKLVELKRELLKERASKAVAGAPSNPGRMREIRRTIARILTI 60
Query: 61 ISQKQK 66
+++K++
Sbjct: 61 MNEKKR 66
>sp|Q0W1Y2|RL29_UNCMA 50S ribosomal protein L29P OS=Uncultured methanogenic archaeon
RC-I GN=rpl29p PE=3 SV=1
Length = 71
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA ++ E+R S +L QLKDL+ +L TGGAP +I+ +R +IA++LT+
Sbjct: 1 MAILRAKEIRGMSDKELDKQLKDLRNDLLKQHAISATGGAPENPGRIRELRRTIARILTI 60
>sp|Q7U4J2|RL29_SYNPX 50S ribosomal protein L29 OS=Synechococcus sp. (strain WH8102)
GN=rpmC PE=3 SV=1
Length = 69
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MAR E+R S TD+ Q+ L+ EL LR + T N + K VR+ +AQ++TV
Sbjct: 1 MARPNAAEVRQLSDTDITEQINGLRRELFQLRFQQATRQLANT-HRFKEVRIKLAQLMTV 59
Query: 61 ISQKQKAA 68
S++Q++A
Sbjct: 60 QSERQRSA 67
>sp|Q6LXE6|RL29_METMP 50S ribosomal protein L29P OS=Methanococcus maripaludis (strain
S2 / LL) GN=rpl29p PE=3 SV=1
Length = 71
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA +K E+R S ++ ++ +LK EL V K TGGAP+ KI + +IA++LT+
Sbjct: 1 MAILKASEIRELSVEEMKGKIAELKRELMKEGVNKSTGGAPSNPGKISETKRTIARILTI 60
Query: 61 ISQKQKAA 68
+ +K+ A
Sbjct: 61 MKEKEAQA 68
>sp|A9KJI6|RL29_CLOPH 50S ribosomal protein L29 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rpmC PE=3 SV=1
Length = 69
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 6 VHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65
V EL+ KS T+L L K EL LR T N S+IK VR +IA++ TVISQK
Sbjct: 7 VEELQAKSTTELNETLVAAKKELFNLRFQNATNQLDN-TSRIKDVRKNIARIQTVISQKA 65
Query: 66 KAA 68
KAA
Sbjct: 66 KAA 68
>sp|Q8SQQ7|RL352_ENCCU 60S ribosomal protein L35-2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL35C PE=1 SV=1
Length = 122
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 23 DLKAELALLRVAKVTG--GAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKF-- 78
++KAELA LR K +G GA + IK + ++A+ LTV +K L EAY+
Sbjct: 22 EIKAELAALRQKKNSGDVGA----NDIKTAKKNLARALTVRREKILEELVEAYRGTPVSK 77
Query: 79 LPLDLRPKKTRAIRRRLTKHQ 99
LP +LRPK R+ RR LTK Q
Sbjct: 78 LPKELRPKLNRSKRRALTKTQ 98
>sp|Q98PZ0|RL29_MYCPU 50S ribosomal protein L29 OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=rpmC PE=3 SV=1
Length = 65
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
+K ++ K +L + DLKAEL LR TG ++ KIK+VR IA+VLT +SQ
Sbjct: 1 MKFKDINVKPVAELEQMVNDLKAELFTLRFQNSTG-QLDQTHKIKMVRQDIAKVLTALSQ 59
Query: 64 KQKAA 68
K + A
Sbjct: 60 KNRGA 64
>sp|A6UWU4|RL29_META3 50S ribosomal protein L29P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl29p PE=3 SV=1
Length = 65
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 43/65 (66%)
Query: 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
MA ++ E+R S ++L ++L ++K EL K TGGAP+ K+K ++ ++A++ T+
Sbjct: 1 MAILRASEIREMSASELNDKLVEIKKELMKENSNKATGGAPSNPGKVKELKRTVARIKTI 60
Query: 61 ISQKQ 65
+++K+
Sbjct: 61 MNEKK 65
>sp|Q18CG9|RL29_CLOD6 50S ribosomal protein L29 OS=Clostridium difficile (strain 630)
GN=rpmC PE=3 SV=1
Length = 67
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
+K ELR + +L+N+L D K+EL LR TG N ++IK V+ IA+V TV+++
Sbjct: 1 MKAKELRDLTSEELMNKLNDFKSELFSLRFQLATGQLENT-ARIKFVKKDIAKVKTVLAE 59
Query: 64 KQ 65
++
Sbjct: 60 RK 61
>sp|Q8ST62|RL351_ENCCU 60S ribosomal protein L35-1 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL35A PE=1 SV=1
Length = 122
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 23 DLKAELALLRVAKVTG--GAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKF-- 78
++KA+LA LR K +G GA + IK + ++A+ LTV +K L EAY+
Sbjct: 22 EIKADLAALRQKKNSGDVGA----NDIKTAKKNLARALTVRREKILEELVEAYRGTPVSK 77
Query: 79 LPLDLRPKKTRAIRRRLTKHQ 99
LP +LRPK R+ RR LTK Q
Sbjct: 78 LPKELRPKLNRSKRRALTKTQ 98
>sp|Q97EI6|RL29_CLOAB 50S ribosomal protein L29 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rpmC PE=3 SV=1
Length = 67
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63
+K ELR K+ +L QL DLK EL LR TG N + +IK V+ SIAQ+ T++ +
Sbjct: 1 MKAKELREKAPEELNLQLNDLKTELFTLRFQLATGQLENPM-RIKEVKKSIAQIKTILRE 59
Query: 64 KQ 65
++
Sbjct: 60 EE 61
>sp|B2UYB8|RL29_CLOBA 50S ribosomal protein L29 OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=rpmC PE=3 SV=1
Length = 70
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR+ + DL +L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ +
Sbjct: 5 ELKELRSSNPQDLTVKLGDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILRED 63
Query: 65 QKAALRE 71
+ AL +
Sbjct: 64 EMRALEQ 70
>sp|B1KSL7|RL29_CLOBM 50S ribosomal protein L29 OS=Clostridium botulinum (strain Loch
Maree / Type A3) GN=rpmC PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR S +L ++L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ ++
Sbjct: 5 ELQELRKSSPQELQSKLNDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|A7GJ66|RL29_CLOBL 50S ribosomal protein L29 OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=rpmC PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR S +L ++L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ ++
Sbjct: 5 ELQELRKSSPQELQSKLNDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|B1IGE6|RL29_CLOBK 50S ribosomal protein L29 OS=Clostridium botulinum (strain Okra /
Type B1) GN=rpmC PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR S +L ++L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ ++
Sbjct: 5 ELQELRKSSPQELQSKLNDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|C1FMU3|RL29_CLOBJ 50S ribosomal protein L29 OS=Clostridium botulinum (strain Kyoto
/ Type A2) GN=rpmC PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR S +L ++L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ ++
Sbjct: 5 ELQELRKSSPQELQSKLNDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
>sp|A5I7J8|RL29_CLOBH 50S ribosomal protein L29 OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=rpmC PE=3 SV=1
Length = 70
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 5 KVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64
++ ELR S +L ++L DLKAEL LR TG N + +I+ V+ SIAQ+ T++ ++
Sbjct: 5 ELQELRKSSPQELQSKLNDLKAELFNLRFQLATGQLENPM-RIREVKKSIAQIKTILREE 63
Query: 65 Q 65
+
Sbjct: 64 E 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,253,798
Number of Sequences: 539616
Number of extensions: 1114523
Number of successful extensions: 5212
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 5056
Number of HSP's gapped (non-prelim): 428
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)