Query 033270
Match_columns 123
No_of_seqs 257 out of 1170
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_U RPL35, 60S ribosomal pr 100.0 6.2E-59 2.1E-63 340.3 12.9 123 1-123 2-124 (124)
2 3u5e_h 60S ribosomal protein L 100.0 4.4E-57 1.5E-61 329.0 12.6 120 1-123 1-120 (120)
3 2zkr_v 60S ribosomal protein L 100.0 5.4E-58 1.9E-62 334.9 7.8 123 1-123 1-123 (123)
4 3iz5_c 60S ribosomal protein L 100.0 2E-57 6.9E-62 332.3 5.7 120 3-123 5-124 (124)
5 1vq8_V 50S ribosomal protein L 99.9 3.3E-27 1.1E-31 157.6 7.5 68 1-68 1-68 (71)
6 3j21_W 50S ribosomal protein L 99.9 4.5E-25 1.5E-29 147.7 10.3 70 4-73 1-70 (72)
7 3jyw_X 60S ribosomal protein L 99.9 8.8E-27 3E-31 161.0 1.5 72 2-76 1-72 (86)
8 1r73_A TM1492, 50S ribosomal p 99.9 3.9E-25 1.3E-29 145.7 6.5 63 4-67 1-63 (66)
9 2zjr_V 50S ribosomal protein L 99.9 8.4E-25 2.9E-29 144.4 5.9 63 4-67 1-63 (67)
10 3v2d_2 50S ribosomal protein L 99.9 1.3E-24 4.4E-29 145.5 6.9 65 3-68 7-71 (72)
11 3r8s_Y 50S ribosomal protein L 99.9 8.6E-25 2.9E-29 142.9 4.1 61 4-65 1-61 (63)
12 3bbo_Z Ribosomal protein L29; 99.9 7.8E-23 2.7E-27 156.0 5.5 76 1-77 60-137 (173)
13 3twe_A Alpha4H; unknown functi 76.3 3.2 0.00011 22.1 3.1 23 14-36 3-25 (27)
14 3s9g_A Protein hexim1; cyclin 61.1 23 0.00078 24.6 5.7 51 6-59 24-79 (104)
15 3okq_A BUD site selection prot 56.2 48 0.0016 24.1 7.0 51 14-64 23-73 (141)
16 2l5g_A GPS2 protein, G protein 41.6 23 0.00078 20.5 2.6 25 11-35 7-31 (38)
17 2r2v_A GCN4 leucine zipper; co 41.2 34 0.0012 19.3 3.3 27 5-32 2-28 (34)
18 2bzb_A Conserved domain protei 38.8 34 0.0012 21.3 3.4 55 12-83 1-55 (62)
19 2oa5_A Hypothetical protein BQ 37.5 95 0.0032 21.7 5.9 43 11-53 7-50 (110)
20 2hv8_D RAB11 family-interactin 35.1 35 0.0012 21.7 3.0 22 6-27 17-38 (64)
21 2c0s_A Conserved domain protei 34.5 43 0.0015 21.0 3.4 23 12-34 1-23 (64)
22 3viq_B Mating-type switching p 32.2 1.1E+02 0.0038 20.3 6.7 43 14-63 10-52 (85)
23 3ni0_A Bone marrow stromal ant 30.1 79 0.0027 21.7 4.4 27 13-39 68-94 (99)
24 1t2k_D Cyclic-AMP-dependent tr 26.5 81 0.0028 18.9 3.6 20 14-33 38-57 (61)
25 2xzm_I RPS16E; ribosome, trans 25.8 71 0.0024 23.1 3.7 46 37-84 72-124 (145)
26 3zyl_A Phosphatidylinositol-bi 24.4 1.3E+02 0.0046 23.2 5.4 66 8-73 162-230 (271)
27 3tso_C RAB11 family-interactin 24.2 74 0.0025 20.8 3.2 25 7-31 9-33 (75)
28 2xdj_A Uncharacterized protein 24.1 74 0.0025 20.8 3.3 25 12-36 20-44 (83)
29 1htn_A Tetranectin; plasminoge 23.1 41 0.0014 23.5 2.0 31 4-34 14-44 (182)
30 1ci6_A Transcription factor AT 22.6 89 0.003 19.1 3.3 16 16-31 27-42 (63)
31 2jo8_A Serine/threonine-protei 21.6 1.1E+02 0.0038 18.5 3.5 30 6-35 4-37 (51)
32 1zme_C Proline utilization tra 21.2 99 0.0034 18.1 3.3 20 14-33 46-65 (70)
33 2hjq_A Hypothetical protein YQ 21.0 1.4E+02 0.0049 20.7 4.3 41 6-62 59-99 (111)
34 2lxm_B Charged multivesicular 20.1 1E+02 0.0035 19.1 3.1 19 11-29 19-37 (57)
35 3zym_A Phosphatidylinositol-bi 20.1 1.9E+02 0.0064 22.8 5.5 66 8-73 162-230 (310)
No 1
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=100.00 E-value=6.2e-59 Score=340.30 Aligned_cols=123 Identities=43% Similarity=0.693 Sum_probs=121.5
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033270 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk~~p 80 (123)
|++|+++|||++|.+||.++|++|+.|||+||||++|||+++|||+|+.||++||||+||++|++.+++|+||+|++|+|
T Consensus 2 ~~~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P 81 (124)
T 4a17_U 2 DKSVRVFKLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQFKGKSLKP 81 (124)
T ss_dssp CCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CcccCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033270 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 82 ~dlr~kktra~rr~Lt~~e~~~kt~k~~~k~~~fp~rk~avka 124 (124)
T 4a17_U 82 LDIRVKKTRAIRRKLTKKQREAVLVKTQKKLNNFGLRKFALKA 124 (124)
T ss_dssp TTTSCCSCHHHHHSCCHHHHHCCCHHHHHHHHHTCCCCCCCCC
T ss_pred cccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 9999999999999999999999999999999999999999997
No 2
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=100.00 E-value=4.4e-57 Score=328.96 Aligned_cols=120 Identities=59% Similarity=0.783 Sum_probs=117.5
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033270 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk~~p 80 (123)
|+.|+++||+++|.+||.++|++|+.|||+||||++|| ++ ||+|+.||++||||+||+||++.+++|+||+|++|+|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-ql--~~~Ir~vRR~IARi~Tvl~er~~~~lr~~yk~kk~~p 77 (120)
T 3u5e_h 1 MAGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQREAVRQLYKGKKYQP 77 (120)
T ss_dssp -CCCCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTS-SC--CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred CCcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999 56 9999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033270 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 78 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~avka 120 (120)
T 3u5e_h 78 KDLRAKKTRALRRALTKFEASQVTEKQRKKQIAFPQRKYAIKA 120 (120)
T ss_dssp TTTSCCSCHHHHSSCCSHHHHCCCHHHHHHHHHSCCCCEEECC
T ss_pred cccCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 9999999999999999999999999999999999999999997
No 3
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.4e-58 Score=334.93 Aligned_cols=123 Identities=63% Similarity=0.950 Sum_probs=60.3
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 033270 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLP 80 (123)
Q Consensus 1 M~~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk~~p 80 (123)
|++|+++|||++|.+||.++|.+|+.|||+||||++|||+++|||+|+.||++||||+||++|++.+++++||+|++|+|
T Consensus 1 Ma~mK~~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~yk~kk~~p 80 (123)
T 2zkr_v 1 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKP 80 (123)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999999999999999999999999779999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033270 81 LDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 81 ~dlr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
+|||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 81 ~dlr~k~tra~rr~Lt~~~~~~kt~k~~~k~~~~p~rk~a~ka 123 (123)
T 2zkr_v 81 LDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYAVKA 123 (123)
T ss_dssp -------------------------------------------
T ss_pred cccchHHHHHHHHHcCHHHHhhccHHHHHHHHhCchhhhhccC
Confidence 9999999999999999999999999999999999999999997
No 4
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=100.00 E-value=2e-57 Score=332.30 Aligned_cols=120 Identities=56% Similarity=0.762 Sum_probs=119.1
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 033270 3 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLD 82 (123)
Q Consensus 3 ~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk~~p~d 82 (123)
+|+++||+++|.+||.++|++|+.|||+||||++|| +++|||+|+.||++||||+||++|++.+++|+||+|++|+|+|
T Consensus 5 ~mKa~ELR~~s~eEL~~~L~eLK~ELf~LRfq~atg-qlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~yk~kk~~P~d 83 (124)
T 3iz5_c 5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVAS-SGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLD 83 (124)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSSH
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence 799999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHhhcChHHhhhhhHHHHHHHhhCCcchhhhcC
Q 033270 83 LRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 123 (123)
Q Consensus 83 lr~kktra~rr~Lt~~~~~~kt~k~~~k~~~~p~r~~a~ka 123 (123)
||||+||||||+||+||+|++|.||++++.+||.|+|||||
T Consensus 84 lr~kktra~rr~Lt~~e~~~kt~k~~~k~~~~p~rk~avka 124 (124)
T 3iz5_c 84 LRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIKA 124 (124)
T ss_dssp HHHHHCSHHHHHTCSCCHHHHTCSSSCSSCSCCCSHHHHCC
T ss_pred cCchHHHHHHHHcCHHHHhhhhHHHHHHHHhCCchheeecC
Confidence 99999999999999999999999999999999999999997
No 5
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.94 E-value=3.3e-27 Score=157.60 Aligned_cols=68 Identities=31% Similarity=0.476 Sum_probs=63.7
Q ss_pred CCCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 033270 1 MARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (123)
Q Consensus 1 M~~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~ 68 (123)
|++|+++|||++|.+||.++|.+|+.|||+|||+++|||+++|||+|+.|||+||||+||++|++.++
T Consensus 1 Ma~mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~~~~ 68 (71)
T 1vq8_V 1 MTVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQ 68 (71)
T ss_dssp -CCSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999997799999999999999999999999998654
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.92 E-value=4.5e-25 Score=147.69 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=66.1
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033270 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAY 73 (123)
Q Consensus 4 mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y 73 (123)
|+++|||++|.+||.++|.+++.|||+||||++||++++|||+|+.+||+||||+||++|++.+..+...
T Consensus 1 MK~~elr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~~~ 70 (72)
T 3j21_W 1 MKPSEIREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREREKGKV 70 (72)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999944999999999999999999999999998877654
No 7
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.92 E-value=8.8e-27 Score=160.95 Aligned_cols=72 Identities=56% Similarity=0.586 Sum_probs=69.2
Q ss_pred CCCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 033270 2 ARVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNK 76 (123)
Q Consensus 2 ~~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~k 76 (123)
++||++|||++|.+||.++|.+|+.|||+||||++|| ++ ||+|+.|||+||||+||++|++.+++|++|+..
T Consensus 1 ~~MKa~ELR~~S~eEL~~~L~eLK~ELf~LRfq~atg-ql--p~rIr~vRRdIARikTvl~er~~~~lr~~y~~~ 72 (86)
T 3jyw_X 1 AGVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSR-PS--LPKIKTVRKSIACVLTVINEQQAAAAAAAAAAA 72 (86)
T ss_dssp CCSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTC-CC--HHHHTCCSTTTHHHHTTTTHHHHHHHSSCCCSS
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999 66 999999999999999999999999999999864
No 8
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.91 E-value=3.9e-25 Score=145.67 Aligned_cols=63 Identities=29% Similarity=0.408 Sum_probs=60.7
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 033270 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (123)
Q Consensus 4 mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~ 67 (123)
||++|||++|.+||.++|.+++.|||+||||++|| +++|||+|+.|||+||||+||++|++.+
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMG-QLKNTSLIKLTKRDIARIKTILRERELG 63 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHcc-CccCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999999999997 9999999999999999999999999863
No 9
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.91 E-value=8.4e-25 Score=144.44 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=60.7
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Q 033270 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKA 67 (123)
Q Consensus 4 mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~ 67 (123)
||++|||++|.+||.++|.+++.|||+|||+++|| +++|||+|+.|||+||||+||++|++.+
T Consensus 1 Mk~~elr~~s~~EL~~~l~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAG-QLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999997 9999999999999999999999998764
No 10
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.91 E-value=1.3e-24 Score=145.46 Aligned_cols=65 Identities=29% Similarity=0.409 Sum_probs=61.4
Q ss_pred CCChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 033270 3 RVKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAA 68 (123)
Q Consensus 3 ~mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~ 68 (123)
.||++|||++|.+||.++|.+++.|||+||||++|| +++||++|+.|||+||||+||++|++.+.
T Consensus 7 ~mK~~elr~~s~eEL~~~L~elk~ELf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~~~~ 71 (72)
T 3v2d_2 7 RKQLEEARKLSPVELEKLVREKKRELMELRFQASIG-QLSQNHKIRDLKRQIARLLTVLNEKRRQN 71 (72)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCTTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999999999999999999 78999999999999999999999998643
No 11
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.90 E-value=8.6e-25 Score=142.87 Aligned_cols=61 Identities=33% Similarity=0.408 Sum_probs=59.2
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHH
Q 033270 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQ 65 (123)
Q Consensus 4 mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq 65 (123)
||++|||++|.+||.++|.+++.|||+|||++++| +++||++|+.+||+||||+||++|++
T Consensus 1 MK~~elr~~s~~EL~~~l~elk~Elf~LR~q~atg-ql~n~~~ir~vRr~IARi~Tvl~er~ 61 (63)
T 3r8s_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASG-QLQQSHLLKQVRRDVARVKTLLNEKA 61 (63)
T ss_dssp CCGGGTTSCHHHHHHHHHHHHTHHHHHHHHHHHTT-CCSCGGGTHHHHHHHHHHHHTTTSST
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999998 89999999999999999999999875
No 12
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.87 E-value=7.8e-23 Score=156.05 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=61.7
Q ss_pred CCC--CChHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 033270 1 MAR--VKVHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKK 77 (123)
Q Consensus 1 M~~--mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk 77 (123)
|++ +++.|||++|.+||.++|.+|+.|||+||||++|| +++||++|+.+||+||||+||+||+++++.-..+...+
T Consensus 60 MAK~~~Ka~ELR~lS~eEL~ekL~eLKkELFnLRfQkATG-QLeNpsrIR~VRRdIARIkTVLrErel~~~~~kr~SRk 137 (173)
T 3bbo_Z 60 MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSAR-NEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRK 137 (173)
T ss_dssp --CCSSCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHHHHHHHSCC-----------
T ss_pred cccccCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 566 89999999999999999999999999999999999 79999999999999999999999999877655544433
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=76.35 E-value=3.2 Score=22.08 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033270 14 KTDLLNQLKDLKAELALLRVAKV 36 (123)
Q Consensus 14 ~eEL~~qL~eLK~EL~~LR~qk~ 36 (123)
.+||-++|++|...|-.||-.-.
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999988886543
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=61.08 E-value=23 Score=24.61 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=38.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHCCCCCccchhHHHHHHHHHHHH
Q 033270 6 VHELRTKSKTDLLNQLKDLKAELALL-----RVAKVTGGAPNKLSKIKVVRLSIAQVLT 59 (123)
Q Consensus 6 a~ELR~~s~eEL~~qL~eLK~EL~~L-----R~qk~tgg~~~k~~kIr~vRK~IARvlT 59 (123)
+.-|.+||+.||..+-.+|...+.++ |++.... . -.++|+.+=-.|-|+-+
T Consensus 24 ~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~-~--~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 24 TESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESK-R--LDARVRELELELDRLRA 79 (104)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--chhhHHHHHHHHHHHHH
Confidence 34588999999999999999999888 5555533 1 24788888888877654
No 15
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=56.17 E-value=48 Score=24.13 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHH
Q 033270 14 KTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQK 64 (123)
Q Consensus 14 ~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ek 64 (123)
.+.|...+++|..-.-.||---+..|.-+.|..+..|.++|..+.+-|+.-
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m 73 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKL 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888878889999999999999999888764
No 16
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.62 E-value=23 Score=20.46 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Q 033270 11 TKSKTDLLNQLKDLKAELALLRVAK 35 (123)
Q Consensus 11 ~~s~eEL~~qL~eLK~EL~~LR~qk 35 (123)
.||.+|..+||..+..+|.+|+-.+
T Consensus 7 ~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 7 RMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887544
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=41.23 E-value=34 Score=19.29 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=18.4
Q ss_pred ChHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 033270 5 KVHELRTKSKTDLLNQLKDLKAELALLR 32 (123)
Q Consensus 5 Ka~ELR~~s~eEL~~qL~eLK~EL~~LR 32 (123)
+...|-++ .|||..+..+|..|+..|+
T Consensus 2 RMnQledK-vEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADK-LEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 34455553 7888888888888876654
No 18
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=38.79 E-value=34 Score=21.33 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 033270 12 KSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDL 83 (123)
Q Consensus 12 ~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ekq~~~lr~~y~~kk~~p~dl 83 (123)
|+.++|..+|++.+.+|..+-... | +..|. ||--..++..+-..|-..++.+..|
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k~--G--l~~~~-------------vI~~SQeLD~LIn~Y~k~~~~~~~~ 55 (62)
T 2bzb_A 1 MEMGQLKNKIENKKKELIQLVARH--G--LDHDK-------------VLLFSRDLDKLINKFMNVKDKVHKL 55 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH--H--CCHHH-------------HHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHc--C--CCCHH-------------HHHHHHHHHHHHHHHHHHhcccchh
Confidence 567899999999999999997654 4 33332 2333455666666666655554433
No 19
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=37.46 E-value=95 Score=21.67 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CccchhHHHHHH
Q 033270 11 TKSKTDLLNQLKDLKAELALLRVAKVTGGAP-NKLSKIKVVRLS 53 (123)
Q Consensus 11 ~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~-~k~~kIr~vRK~ 53 (123)
++|.|||.++|..|+-|=..|+-+-..||+. +++..+-.--|+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKe 50 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRE 50 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHH
Confidence 7899999999999999999998765544444 444444444443
No 20
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=35.11 E-value=35 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=16.9
Q ss_pred hHHHhcCCHHHHHHHHHHHHHH
Q 033270 6 VHELRTKSKTDLLNQLKDLKAE 27 (123)
Q Consensus 6 a~ELR~~s~eEL~~qL~eLK~E 27 (123)
+.++-++|.+||.+.+.+.+..
T Consensus 17 Aae~~~~s~deL~~~l~eqee~ 38 (64)
T 2hv8_D 17 AAEISSVSRDELMEAIQKQEEI 38 (64)
T ss_dssp HTTCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999888765553
No 21
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=34.51 E-value=43 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 033270 12 KSKTDLLNQLKDLKAELALLRVA 34 (123)
Q Consensus 12 ~s~eEL~~qL~eLK~EL~~LR~q 34 (123)
|..++|..+|++.+.+|..+-..
T Consensus 1 M~~~~L~~~IE~kR~eL~~l~~k 23 (64)
T 2c0s_A 1 MNVTKLNDRIEAKKKELIYLVEK 23 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999743
No 22
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.22 E-value=1.1e+02 Score=20.29 Aligned_cols=43 Identities=14% Similarity=0.039 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHH
Q 033270 14 KTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQ 63 (123)
Q Consensus 14 ~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~e 63 (123)
.++|..++..|..++..++ + .+.++.--..+.+.|..+. ..|+
T Consensus 10 i~~L~~q~~~L~~ei~~~~-----a-~L~~~~~~~~~~~hI~~Lh-~YNe 52 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDAL-----A-KLKNRDAKQTVQKHIDLLH-TYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----H-TCSSSCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----H-HhccCCHHHHHHHHHHHHH-HHhH
Confidence 4444555555555544443 2 3445555556777776544 4554
No 23
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.08 E-value=79 Score=21.69 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC
Q 033270 13 SKTDLLNQLKDLKAELALLRVAKVTGG 39 (123)
Q Consensus 13 s~eEL~~qL~eLK~EL~~LR~qk~tgg 39 (123)
-.+||..+|..|..+|-+.+.++-++.
T Consensus 68 ~v~elqgEI~~Lnq~Lqda~~~~~~~~ 94 (99)
T 3ni0_A 68 RIKELENEVTKLNQELENLRIQKETSS 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 378999999999999999999998763
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.50 E-value=81 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033270 14 KTDLLNQLKDLKAELALLRV 33 (123)
Q Consensus 14 ~eEL~~qL~eLK~EL~~LR~ 33 (123)
.++|..++..|..|+..|+.
T Consensus 38 n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 38 NGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555553
No 25
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=25.80 E-value=71 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=34.8
Q ss_pred HCCCCCccchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHh--CCCCCCCCCC
Q 033270 37 TGGAPNKLSKIKVVRLSIAQVLTVI-----SQKQKAALREAYK--NKKFLPLDLR 84 (123)
Q Consensus 37 tgg~~~k~~kIr~vRK~IARvlTVl-----~ekq~~~lr~~y~--~kk~~p~dlr 84 (123)
.|| .-.++...+|-.|||.|..+ ++..+..|++.|. +..++--|-|
T Consensus 72 ~GG--G~sgQA~AiR~aIArAL~~~~~k~~d~~~r~~Lk~~l~~ydrglLtrD~R 124 (145)
T 2xzm_I 72 RGS--GYTSQVYAIRQALSKGIVAYHAKYVDENSKREIKEQLMQYDRSLLVADPR 124 (145)
T ss_dssp CCS--SHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCSTTTSCBCC
T ss_pred EcC--CeecHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHhhcCCCcCcCCCc
Confidence 455 34589999999999999999 7777888888865 3355555655
No 26
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=24.41 E-value=1.3e+02 Score=23.25 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033270 8 ELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKI---KVVRLSIAQVLTVISQKQKAALREAY 73 (123)
Q Consensus 8 ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kI---r~vRK~IARvlTVl~ekq~~~lr~~y 73 (123)
-+++++.++|..++..+...|+.|=--..+|+.++|.-.+ .-+=++.=.+...+|+--..=+..||
T Consensus 162 ~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ff 230 (271)
T 3zyl_A 162 VMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230 (271)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999888763333445455554333 34446777888888887776666666
No 27
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=24.24 E-value=74 Score=20.80 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH
Q 033270 7 HELRTKSKTDLLNQLKDLKAELALL 31 (123)
Q Consensus 7 ~ELR~~s~eEL~~qL~eLK~EL~~L 31 (123)
....++|.+||.+.+..++.+|..-
T Consensus 9 a~y~~ltreELi~l~lk~~~~l~~k 33 (75)
T 3tso_C 9 AGYRSLTYEEVLQELVKHKELLRRK 33 (75)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999887653
No 28
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.06 E-value=74 Score=20.80 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 033270 12 KSKTDLLNQLKDLKAELALLRVAKV 36 (123)
Q Consensus 12 ~s~eEL~~qL~eLK~EL~~LR~qk~ 36 (123)
-+.-||..+|++++.|+..||-+--
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467899999999999999986644
No 29
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=23.13 E-value=41 Score=23.50 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=15.7
Q ss_pred CChHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 033270 4 VKVHELRTKSKTDLLNQLKDLKAELALLRVA 34 (123)
Q Consensus 4 mKa~ELR~~s~eEL~~qL~eLK~EL~~LR~q 34 (123)
.+..+-.....++|..+|+.|..+|..|.-.
T Consensus 14 ~~~~~~~~~~~~~L~~~~~~l~~~l~~l~~~ 44 (182)
T 1htn_A 14 AKKDVVNTKMFEELKSRLDTLSQEVALLKEQ 44 (182)
T ss_dssp -------------CHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566889999999999999888754
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.61 E-value=89 Score=19.08 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 033270 16 DLLNQLKDLKAELALL 31 (123)
Q Consensus 16 EL~~qL~eLK~EL~~L 31 (123)
+|..++.+|..+=..|
T Consensus 27 ~le~~~~~L~~~N~~L 42 (63)
T 1ci6_A 27 ALTGECKELEKKNEAL 42 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444433333
No 31
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=21.57 E-value=1.1e+02 Score=18.49 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=19.7
Q ss_pred hHHHhcCCHHHHHHHHHHHHH----HHHHHHHHH
Q 033270 6 VHELRTKSKTDLLNQLKDLKA----ELALLRVAK 35 (123)
Q Consensus 6 a~ELR~~s~eEL~~qL~eLK~----EL~~LR~qk 35 (123)
..=|.++|.+||...+..|-. |+-.||...
T Consensus 4 f~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY 37 (51)
T 2jo8_A 4 YEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKY 37 (51)
T ss_dssp CGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhCCHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 344788999999988866543 444455443
No 32
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.20 E-value=99 Score=18.12 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033270 14 KTDLLNQLKDLKAELALLRV 33 (123)
Q Consensus 14 ~eEL~~qL~eLK~EL~~LR~ 33 (123)
.++|..++.+|...|..|+-
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888899999988888764
No 33
>2hjq_A Hypothetical protein YQBF; two-domain, structure, BSU26130, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.140.3.2 d.344.1.1
Probab=21.02 E-value=1.4e+02 Score=20.67 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=31.5
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHH
Q 033270 6 VHELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVIS 62 (123)
Q Consensus 6 a~ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kIr~vRK~IARvlTVl~ 62 (123)
-++|.+||++|-..=|.+| | .+|+.++..--.||=||-.|.
T Consensus 59 Es~LK~m~Kaeqe~iI~~L-------------G---~~~~d~KNe~ERIa~ILe~~~ 99 (111)
T 2hjq_A 59 ESELKGMNKAEHESIISNL-------------G---RNPSDFKNADERIAYILKQID 99 (111)
T ss_dssp HHHHHTCCHHHHHHHHHHH-------------T---CCTTSCCSHHHHHHHHHHHHT
T ss_pred HHHHhhhhhhhHHHHHHHh-------------C---CCchhhcChhHHHHHHHHHcc
Confidence 4789999999877666554 6 467888888889998886653
No 34
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=20.09 E-value=1e+02 Score=19.06 Aligned_cols=19 Identities=32% Similarity=0.352 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 033270 11 TKSKTDLLNQLKDLKAELA 29 (123)
Q Consensus 11 ~~s~eEL~~qL~eLK~EL~ 29 (123)
+.+.+||..+|+.|..|..
T Consensus 19 diDEdEL~aELe~LeqE~~ 37 (57)
T 2lxm_B 19 ELDEDDLEAELDALGDELL 37 (57)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 4788999999999999874
No 35
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=20.08 E-value=1.9e+02 Score=22.79 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccchh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033270 8 ELRTKSKTDLLNQLKDLKAELALLRVAKVTGGAPNKLSKI---KVVRLSIAQVLTVISQKQKAALREAY 73 (123)
Q Consensus 8 ELR~~s~eEL~~qL~eLK~EL~~LR~qk~tgg~~~k~~kI---r~vRK~IARvlTVl~ekq~~~lr~~y 73 (123)
-+++++.++|..++..+...++.+=--..+|+..+|.-.+ .-+=++.=.+...+|+--..=+..||
T Consensus 162 ~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ff 230 (310)
T 3zym_A 162 VMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYF 230 (310)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999888763323344444554333 33336666677777775544444444
Done!