BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033271
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
          Inhibiting Protein), A Leucine Rich Repeat Protein
          Involved In Plant Defense
          Length = 313

 Score = 34.7 bits (78), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 25 EGCLEQERSALLQLKHFFNDDHCLQNWVDDENYSDCCQ--WEGVECN-DT-TGRVIELDL 80
          E C  Q++ ALLQ+K    +   L +W+     +DCC   W GV C+ DT T RV  LDL
Sbjct: 1  ELCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 81 A 81
          +
Sbjct: 58 S 58


>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
           Complex With Unwound Dna
 pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
          Length = 702

 Score = 29.3 bits (64), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 11/49 (22%)

Query: 47  CLQNWVDDENYSDCCQWEGVECNDTTGRVIELDLALTRNWESAEWYMNA 95
           CL++W+++++  + C   G+   D           L R  E+AEW  NA
Sbjct: 566 CLKDWIEEKDEDEICAKYGIAPGD-----------LRRIVETAEWLSNA 603


>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
           Ef-Pyl From Methanosarcina Mazei
          Length = 370

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 71  TTGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121
           T+G V++       +WE      N S   PF+ ++ L   +N +A  +E E
Sbjct: 141 TSGTVLQ-------DWECISLNTNKSAKNPFEGVDELKARINEVAEKIEAE 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,951,844
Number of Sequences: 62578
Number of extensions: 146583
Number of successful extensions: 300
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 9
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)