Query 033271
Match_columns 123
No_of_seqs 203 out of 1167
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.5 5.4E-14 1.2E-18 115.0 8.6 84 28-120 27-111 (968)
2 PLN03150 hypothetical protein; 99.1 2.2E-10 4.8E-15 90.7 7.6 88 26-119 368-459 (623)
3 PF08263 LRRNT_2: Leucine rich 99.0 4.4E-10 9.5E-15 59.1 3.9 39 29-69 2-43 (43)
4 PLN03150 hypothetical protein; 97.6 4.5E-05 9.7E-10 60.8 2.6 42 75-121 468-509 (623)
5 PF12799 LRR_4: Leucine Rich r 97.6 6E-05 1.3E-09 39.5 2.1 36 74-115 2-37 (44)
6 PF00560 LRR_1: Leucine Rich R 97.5 5.5E-05 1.2E-09 33.7 1.0 18 103-121 1-18 (22)
7 PLN00113 leucine-rich repeat r 96.9 0.00069 1.5E-08 56.2 3.1 42 75-121 549-590 (968)
8 PF13855 LRR_8: Leucine rich r 96.9 0.0014 2.9E-08 36.4 2.9 36 74-114 26-61 (61)
9 PF13855 LRR_8: Leucine rich r 96.7 0.0014 3E-08 36.3 2.4 41 74-119 2-42 (61)
10 PF13504 LRR_7: Leucine rich r 96.1 0.0035 7.5E-08 26.1 1.1 14 102-115 1-14 (17)
11 PF13516 LRR_6: Leucine Rich r 95.1 0.011 2.4E-07 26.5 0.9 17 101-117 1-17 (24)
12 KOG4237 Extracellular matrix p 94.8 0.029 6.3E-07 42.8 3.0 41 74-119 68-108 (498)
13 smart00370 LRR Leucine-rich re 94.7 0.026 5.6E-07 25.7 1.7 16 101-116 1-16 (26)
14 smart00369 LRR_TYP Leucine-ric 94.7 0.026 5.6E-07 25.7 1.7 16 101-116 1-16 (26)
15 smart00365 LRR_SD22 Leucine-ri 93.4 0.066 1.4E-06 24.7 1.6 15 101-115 1-15 (26)
16 KOG0472 Leucine-rich repeat pr 93.4 0.046 9.9E-07 42.0 1.6 39 74-120 506-544 (565)
17 smart00368 LRR_RI Leucine rich 93.0 0.076 1.6E-06 24.8 1.5 14 102-115 2-15 (28)
18 PRK15387 E3 ubiquitin-protein 92.9 0.031 6.7E-07 46.1 0.2 26 95-120 438-463 (788)
19 KOG0472 Leucine-rich repeat pr 92.5 0.052 1.1E-06 41.7 0.8 40 72-117 251-290 (565)
20 PF14580 LRR_9: Leucine-rich r 90.2 0.31 6.8E-06 33.0 2.7 16 100-115 86-101 (175)
21 KOG0617 Ras suppressor protein 90.1 0.039 8.4E-07 37.9 -1.7 20 95-114 72-91 (264)
22 KOG2982 Uncharacterized conser 88.9 0.06 1.3E-06 39.9 -1.6 44 73-119 71-114 (418)
23 KOG1259 Nischarin, modulator o 88.6 0.3 6.5E-06 36.5 1.8 36 73-115 307-342 (490)
24 smart00364 LRR_BAC Leucine-ric 87.6 0.34 7.4E-06 22.4 1.0 15 102-116 2-16 (26)
25 KOG4579 Leucine-rich repeat (L 86.0 0.24 5.1E-06 32.9 0.0 22 95-116 93-114 (177)
26 KOG0617 Ras suppressor protein 85.9 0.25 5.3E-06 34.1 0.1 24 94-117 94-117 (264)
27 PLN03210 Resistant to P. syrin 85.7 0.86 1.9E-05 39.3 3.3 42 74-120 779-820 (1153)
28 PF14580 LRR_9: Leucine-rich r 84.6 1.1 2.4E-05 30.3 2.8 39 74-116 89-127 (175)
29 KOG0444 Cytoskeletal regulator 84.1 0.33 7.2E-06 39.7 0.1 36 74-115 223-258 (1255)
30 KOG0444 Cytoskeletal regulator 83.8 0.31 6.6E-06 39.9 -0.2 20 95-114 96-115 (1255)
31 PRK15387 E3 ubiquitin-protein 82.0 1.7 3.8E-05 36.1 3.4 14 103-116 343-356 (788)
32 KOG4658 Apoptotic ATPase [Sign 81.3 0.97 2.1E-05 38.1 1.8 21 95-115 588-608 (889)
33 PF07172 GRP: Glycine rich pro 76.7 2.7 5.9E-05 25.6 2.3 8 1-8 1-8 (95)
34 cd00116 LRR_RI Leucine-rich re 75.9 1.5 3.2E-05 31.5 1.3 19 98-116 217-235 (319)
35 PLN03210 Resistant to P. syrin 74.7 3.6 7.9E-05 35.6 3.4 24 96-119 675-698 (1153)
36 PRK15370 E3 ubiquitin-protein 74.7 3.3 7.2E-05 34.4 3.0 21 23-43 56-76 (754)
37 PRK15370 E3 ubiquitin-protein 74.0 3.5 7.6E-05 34.3 3.0 13 103-115 263-275 (754)
38 cd00116 LRR_RI Leucine-rich re 73.7 1.3 2.8E-05 31.8 0.5 19 98-116 132-151 (319)
39 KOG0618 Serine/threonine phosp 73.6 0.91 2E-05 38.4 -0.4 45 63-115 376-420 (1081)
40 KOG0532 Leucine-rich repeat (L 73.3 2.4 5.2E-05 34.3 1.8 37 74-116 212-248 (722)
41 KOG4194 Membrane glycoprotein 70.4 1.2 2.6E-05 36.2 -0.4 39 72-115 124-162 (873)
42 KOG0618 Serine/threonine phosp 69.0 1.3 2.9E-05 37.4 -0.4 37 73-115 91-127 (1081)
43 KOG0531 Protein phosphatase 1, 66.9 3.8 8.3E-05 31.2 1.7 38 74-117 96-133 (414)
44 KOG1859 Leucine-rich repeat pr 66.8 0.88 1.9E-05 37.8 -1.8 35 74-115 188-222 (1096)
45 KOG4237 Extracellular matrix p 66.4 2.8 6E-05 32.4 0.9 21 97-117 269-289 (498)
46 KOG1644 U2-associated snRNP A' 65.9 6.5 0.00014 27.7 2.5 34 75-115 44-77 (233)
47 KOG2739 Leucine-rich acidic nu 65.8 3.8 8.2E-05 29.6 1.4 15 101-115 90-104 (260)
48 smart00367 LRR_CC Leucine-rich 59.1 7.8 0.00017 17.2 1.4 13 101-113 1-13 (26)
49 COG4886 Leucine-rich repeat (L 57.8 4 8.7E-05 30.5 0.4 19 97-115 158-176 (394)
50 KOG3207 Beta-tubulin folding c 54.0 2.4 5.3E-05 33.0 -1.3 43 73-118 146-188 (505)
51 COG4886 Leucine-rich repeat (L 51.3 15 0.00032 27.5 2.5 40 75-121 257-296 (394)
52 KOG4194 Membrane glycoprotein 49.1 18 0.0004 29.7 2.8 18 97-114 216-233 (873)
53 COG5238 RNA1 Ran GTPase-activa 45.4 11 0.00023 28.1 0.9 24 98-121 88-111 (388)
54 cd01262 PH_PDK1 3-Phosphoinosi 34.7 24 0.00053 21.2 1.2 24 98-121 22-45 (89)
55 KOG1859 Leucine-rich repeat pr 34.6 6.3 0.00014 33.1 -1.7 20 98-117 250-269 (1096)
56 KOG4658 Apoptotic ATPase [Sign 34.5 15 0.00032 31.3 0.3 26 96-121 565-590 (889)
57 KOG3763 mRNA export factor TAP 30.0 27 0.00059 28.2 1.0 38 72-112 217-254 (585)
58 smart00446 LRRcap occurring C- 28.4 18 0.00039 16.6 -0.1 14 98-111 9-22 (26)
59 KOG1909 Ran GTPase-activating 28.1 20 0.00042 27.3 0.0 13 73-85 213-225 (382)
60 PF07151 DUF1391: Protein of u 27.3 46 0.00099 17.2 1.3 16 106-121 2-19 (49)
61 PF05984 Cytomega_UL20A: Cytom 25.0 1E+02 0.0022 18.4 2.6 15 5-19 3-17 (100)
62 PF13260 DUF4051: Protein of u 23.4 98 0.0021 16.4 2.1 16 28-43 29-44 (54)
63 PF14593 PH_3: PH domain; PDB: 23.4 44 0.00095 20.7 0.9 24 98-121 34-57 (104)
64 KOG0473 Leucine-rich repeat pr 20.9 5.6 0.00012 28.9 -3.8 13 73-85 42-54 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.51 E-value=5.4e-14 Score=115.04 Aligned_cols=84 Identities=29% Similarity=0.559 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCceeceeEecCCCCcEEEEEcCCCCcccccccccCCcCCcCCCCCcE
Q 033271 28 LEQERSALLQLKHFFN-DDHCLQNWVDDENYSDCCQWEGVECNDTTGRVIELDLALTRNWESAEWYMNASLFTPFQQLES 106 (123)
Q Consensus 28 ~~~~~~aL~~~k~~l~-~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~ 106 (123)
.+.|+.+|++||+.+. +...+.+|+ ...++|.|.||.|++ .++|+.|+|+++++ .|.+ +..+..+++|+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i--~~~~---~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNI--SGKI---SSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCc--cccC---ChHHhCCCCCCE
Confidence 4589999999999987 555678897 567899999999986 57899999999987 6655 556667777777
Q ss_pred EeCCCCeeeeecCC
Q 033271 107 LDLSLNNIAGCVEN 120 (123)
Q Consensus 107 LdLs~N~l~G~IP~ 120 (123)
|||++|+++|.||.
T Consensus 98 L~Ls~n~~~~~ip~ 111 (968)
T PLN00113 98 INLSNNQLSGPIPD 111 (968)
T ss_pred EECCCCccCCcCCh
Confidence 77777777777665
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.2e-10 Score=90.66 Aligned_cols=88 Identities=24% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceeceeEecCC--C--CcEEEEEcCCCCcccccccccCCcCCcCC
Q 033271 26 GCLEQERSALLQLKHFFNDDHCLQNWVDDENYSDCCQWEGVECNDT--T--GRVIELDLALTRNWESAEWYMNASLFTPF 101 (123)
Q Consensus 26 ~~~~~~~~aL~~~k~~l~~~~~l~~W~~~~~~~~~C~w~gv~C~~~--~--~~v~~l~L~~~~l~~~G~~~~~p~~l~~l 101 (123)
.+.+.|..+|..+|+.+.... ..+|.+++.....|.|.|+.|+.. . .+|+.|+|+++++ .|.+ |..++.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~-~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L--~g~i---p~~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL-RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL--RGFI---PNDISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc-cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCc--cccC---CHHHhCC
Confidence 455679999999999886221 137872111111227999999521 1 2488888888877 5554 4444444
Q ss_pred CCCcEEeCCCCeeeeecC
Q 033271 102 QQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 102 ~~L~~LdLs~N~l~G~IP 119 (123)
++|+.|+|++|+|+|.||
T Consensus 442 ~~L~~L~Ls~N~l~g~iP 459 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIP 459 (623)
T ss_pred CCCCEEECCCCcccCcCC
Confidence 444444444444444444
No 3
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.02 E-value=4.4e-10 Score=59.08 Aligned_cols=39 Identities=44% Similarity=0.881 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCC-C-CCCCCCCCCCCCC-CCCceeceeEec
Q 033271 29 EQERSALLQLKHFFN-D-DHCLQNWVDDENY-SDCCQWEGVECN 69 (123)
Q Consensus 29 ~~~~~aL~~~k~~l~-~-~~~l~~W~~~~~~-~~~C~w~gv~C~ 69 (123)
++|+++|++||+.+. + ...+.+|+ ... .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~--~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN--PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT----TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC--CcCCCCCeeeccEEeC
Confidence 579999999999998 3 47789998 232 789999999995
No 4
>PLN03150 hypothetical protein; Provisional
Probab=97.58 E-value=4.5e-05 Score=60.84 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
++.|+|++|++ .|.+ |..+++|++|++|||++|+|+|.||..
T Consensus 468 L~~LdLs~N~l--sg~i---P~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 468 LEVLDLSYNSF--NGSI---PESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred CCEEECCCCCC--CCCC---chHHhcCCCCCEEECcCCcccccCChH
Confidence 44445555544 4444 555666666666666666666666653
No 5
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=6e-05 Score=39.53 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.+..|+++++++ . .+ |+.+++|++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i--~-~l---~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQI--T-DL---PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS---S-SH---GGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCC--c-cc---CchHhCCCCCCEEEecCCCCC
Confidence 367889999976 3 34 566999999999999999987
No 6
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.46 E-value=5.5e-05 Score=33.75 Aligned_cols=18 Identities=44% Similarity=0.588 Sum_probs=16.5
Q ss_pred CCcEEeCCCCeeeeecCCC
Q 033271 103 QLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 103 ~L~~LdLs~N~l~G~IP~~ 121 (123)
+|++|||++|+|+ +||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 5899999999999 99986
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.94 E-value=0.00069 Score=56.19 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..++|++|++ .|.+ |..+..++.|++||+++|+++|.||..
T Consensus 549 L~~L~Ls~N~l--~~~~---p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 549 LSQLDLSQNQL--SGEI---PKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred CCEEECCCCcc--cccC---ChhHhcCcccCEEeccCCcceeeCCCc
Confidence 44455555554 4444 555666677777777777777777754
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.85 E-value=0.0014 Score=36.35 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l 114 (123)
++..|+++++.+ . .+.+..|..+++|++|++++|+|
T Consensus 26 ~L~~L~l~~N~l--~---~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 26 NLETLDLSNNNL--T---SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSSE--S---EEETTTTTTSTTESEEEETSSSB
T ss_pred CCCEeEccCCcc--C---ccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555544 1 11234455555555555555543
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.73 E-value=0.0014 Score=36.30 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
++..|+++++.+ . .+++..|..+++|++||+++|.++.--|
T Consensus 2 ~L~~L~l~~n~l--~---~i~~~~f~~l~~L~~L~l~~N~l~~i~~ 42 (61)
T PF13855_consen 2 NLESLDLSNNKL--T---EIPPDSFSNLPNLETLDLSNNNLTSIPP 42 (61)
T ss_dssp TESEEEETSSTE--S---EECTTTTTTGTTESEEEETSSSESEEET
T ss_pred cCcEEECCCCCC--C---ccCHHHHcCCCCCCEeEccCCccCccCH
Confidence 577899999876 2 2335678999999999999999975433
No 10
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.09 E-value=0.0035 Score=26.05 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=9.8
Q ss_pred CCCcEEeCCCCeee
Q 033271 102 QQLESLDLSLNNIA 115 (123)
Q Consensus 102 ~~L~~LdLs~N~l~ 115 (123)
++|+.|||++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 57999999999986
No 11
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.08 E-value=0.011 Score=26.51 Aligned_cols=17 Identities=47% Similarity=0.483 Sum_probs=12.2
Q ss_pred CCCCcEEeCCCCeeeee
Q 033271 101 FQQLESLDLSLNNIAGC 117 (123)
Q Consensus 101 l~~L~~LdLs~N~l~G~ 117 (123)
+++|++|||++|.+++.
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 47899999999998764
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.82 E-value=0.029 Score=42.81 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..++|+|..|++ . .+++..|..+.+|+.||||+|+++--=|
T Consensus 68 ~tveirLdqN~I--~---~iP~~aF~~l~~LRrLdLS~N~Is~I~p 108 (498)
T KOG4237|consen 68 ETVEIRLDQNQI--S---SIPPGAFKTLHRLRRLDLSKNNISFIAP 108 (498)
T ss_pred cceEEEeccCCc--c---cCChhhccchhhhceecccccchhhcCh
Confidence 578899998876 1 3446679999999999999999875433
No 13
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.73 E-value=0.026 Score=25.69 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.8
Q ss_pred CCCCcEEeCCCCeeee
Q 033271 101 FQQLESLDLSLNNIAG 116 (123)
Q Consensus 101 l~~L~~LdLs~N~l~G 116 (123)
|++|++|+|++|+++-
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 5789999999998863
No 14
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.73 E-value=0.026 Score=25.69 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=13.8
Q ss_pred CCCCcEEeCCCCeeee
Q 033271 101 FQQLESLDLSLNNIAG 116 (123)
Q Consensus 101 l~~L~~LdLs~N~l~G 116 (123)
|++|++|+|++|+++-
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 5789999999998863
No 15
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=93.45 E-value=0.066 Score=24.74 Aligned_cols=15 Identities=53% Similarity=0.711 Sum_probs=13.1
Q ss_pred CCCCcEEeCCCCeee
Q 033271 101 FQQLESLDLSLNNIA 115 (123)
Q Consensus 101 l~~L~~LdLs~N~l~ 115 (123)
+++|+.|+|++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 578999999999875
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.40 E-value=0.046 Score=42.01 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+++.+||.+|.+ ...|+.++++++|++|+|++|.|. .|.
T Consensus 506 nL~tLDL~nNdl------q~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 506 NLTTLDLQNNDL------QQIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred hcceeccCCCch------hhCChhhccccceeEEEecCCccC--CCH
Confidence 466777777754 223899999999999999999998 554
No 17
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.97 E-value=0.076 Score=24.78 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred CCCcEEeCCCCeee
Q 033271 102 QQLESLDLSLNNIA 115 (123)
Q Consensus 102 ~~L~~LdLs~N~l~ 115 (123)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999884
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=92.94 E-value=0.031 Score=46.08 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=22.6
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
|..++++++|+.|+|++|.|+|.+|.
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCchHHH
Confidence 66688899999999999999998664
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.48 E-value=0.052 Score=41.73 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 72 TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 72 ~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
-.++..+||..|.+ +--|.+++.|++|.+||+|+|.++|-
T Consensus 251 L~~l~vLDLRdNkl------ke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKL------KEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred cccceeeecccccc------ccCchHHHHhhhhhhhcccCCccccC
Confidence 35678889998876 22388999999999999999999984
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=90.18 E-value=0.31 Score=33.02 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=5.6
Q ss_pred CCCCCcEEeCCCCeee
Q 033271 100 PFQQLESLDLSLNNIA 115 (123)
Q Consensus 100 ~l~~L~~LdLs~N~l~ 115 (123)
.+++|+.|+|++|++.
T Consensus 86 ~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 86 NLPNLQELYLSNNKIS 101 (175)
T ss_dssp H-TT--EEE-TTS---
T ss_pred hCCcCCEEECcCCcCC
Confidence 3566666666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=90.12 E-value=0.039 Score=37.93 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=10.8
Q ss_pred CcCCcCCCCCcEEeCCCCee
Q 033271 95 ASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l 114 (123)
|..++.++.|+.|+++-|++
T Consensus 72 p~~issl~klr~lnvgmnrl 91 (264)
T KOG0617|consen 72 PTSISSLPKLRILNVGMNRL 91 (264)
T ss_pred Chhhhhchhhhheecchhhh
Confidence 44455555555555555554
No 22
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.06 Score=39.92 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.+|.++||.+|.+ ..|.-....+-+|++|++|+||.|.|+..|-
T Consensus 71 ~~v~elDL~~N~i---SdWseI~~ile~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 71 TDVKELDLTGNLI---SDWSEIGAILEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred hhhhhhhcccchh---ccHHHHHHHHhcCccceEeeccCCcCCCccc
Confidence 3577788877754 1121112346678899999999998887654
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=88.61 E-value=0.3 Score=36.48 Aligned_cols=36 Identities=31% Similarity=0.259 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
..|..++++.|++...| .+..|++|+.||||+|.|+
T Consensus 307 Pkir~L~lS~N~i~~v~-------nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQ-------NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred cceeEEeccccceeeeh-------hhhhcccceEeecccchhH
Confidence 35666777777652222 2677899999999999775
No 24
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.60 E-value=0.34 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.7
Q ss_pred CCCcEEeCCCCeeee
Q 033271 102 QQLESLDLSLNNIAG 116 (123)
Q Consensus 102 ~~L~~LdLs~N~l~G 116 (123)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 478999999999874
No 25
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=85.96 E-value=0.24 Score=32.90 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.0
Q ss_pred CcCCcCCCCCcEEeCCCCeeee
Q 033271 95 ASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G 116 (123)
|.+++.++.|+.|++++|.|.-
T Consensus 93 PeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 93 PEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hHHHhhhHHhhhcccccCcccc
Confidence 7778899999999999998764
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=85.86 E-value=0.25 Score=34.09 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCcCCcCCCCCcEEeCCCCeeeee
Q 033271 94 NASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 94 ~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.|..|+.++.|+.|||++|+++-.
T Consensus 94 lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred CccccCCCchhhhhhccccccccc
Confidence 478899999999999999988753
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=85.75 E-value=0.86 Score=39.33 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.+..|+++++.. .+.+ |..++++++|+.|++++|..-+.||.
T Consensus 779 sL~~L~Ls~n~~--l~~l---P~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 779 SLTRLFLSDIPS--LVEL---PSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cchheeCCCCCC--cccc---ChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 466677777655 5555 66778888888888887765556664
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=84.61 E-value=1.1 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+..|++++|.+...+.+ ..+..+++|+.|+|.+|-++-
T Consensus 89 ~L~~L~L~~N~I~~l~~l----~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNEL----EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp T--EEE-TTS---SCCCC----GGGGG-TT--EEE-TT-GGGG
T ss_pred cCCEEECcCCcCCChHHh----HHHHcCCCcceeeccCCcccc
Confidence 355666666655323322 346789999999999998763
No 29
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=84.07 E-value=0.33 Score=39.73 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.+..++|+.|++ .+-|..+.++.+|+.|+||+|.++
T Consensus 223 NL~dvDlS~N~L------p~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 223 NLRDVDLSENNL------PIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhccccccCC------CcchHHHhhhhhhheeccCcCcee
Confidence 355677888876 233777888888888888888775
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=83.76 E-value=0.31 Score=39.90 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=10.1
Q ss_pred CcCCcCCCCCcEEeCCCCee
Q 033271 95 ASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l 114 (123)
|..+..|..|+.||||+|+|
T Consensus 96 P~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred Cchhcccccceeeecchhhh
Confidence 44445555555555555544
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=82.02 E-value=1.7 Score=36.14 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=10.0
Q ss_pred CCcEEeCCCCeeee
Q 033271 103 QLESLDLSLNNIAG 116 (123)
Q Consensus 103 ~L~~LdLs~N~l~G 116 (123)
+|+.|||++|+|++
T Consensus 343 ~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 343 GLQELSVSDNQLAS 356 (788)
T ss_pred ccceEecCCCccCC
Confidence 57777777777774
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=81.28 E-value=0.97 Score=38.10 Aligned_cols=21 Identities=33% Similarity=0.333 Sum_probs=11.8
Q ss_pred CcCCcCCCCCcEEeCCCCeee
Q 033271 95 ASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~ 115 (123)
|..++.|-+|++|||+...++
T Consensus 588 P~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred ChHHhhhhhhhcccccCCCcc
Confidence 555555555555555555544
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.73 E-value=2.7 Score=25.62 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.9
Q ss_pred CcchhhHH
Q 033271 1 MCGSKRVW 8 (123)
Q Consensus 1 m~~~~~~~ 8 (123)
|++++.++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 77444333
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=75.94 E-value=1.5 Score=31.45 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=11.1
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++||+++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 3445666666666666554
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=74.71 E-value=3.6 Score=35.63 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=11.1
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..+.++++|+.|+++++..-+.+|
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccC
Confidence 334445555555555443333444
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=74.66 E-value=3.3 Score=34.36 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=14.6
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 033271 23 WSEGCLEQERSALLQLKHFFN 43 (123)
Q Consensus 23 ~~~~~~~~~~~aL~~~k~~l~ 43 (123)
+.....+++...+.++.+.+.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~ 76 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLA 76 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 444556777788888777776
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=73.98 E-value=3.5 Score=34.25 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=5.9
Q ss_pred CCcEEeCCCCeee
Q 033271 103 QLESLDLSLNNIA 115 (123)
Q Consensus 103 ~L~~LdLs~N~l~ 115 (123)
+|+.|+|++|+|+
T Consensus 263 ~L~~L~Ls~N~L~ 275 (754)
T PRK15370 263 ALQSLDLFHNKIS 275 (754)
T ss_pred CCCEEECcCCccC
Confidence 3444444444444
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=73.69 E-value=1.3 Score=31.77 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=12.2
Q ss_pred CcCC-CCCcEEeCCCCeeee
Q 033271 98 FTPF-QQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l-~~L~~LdLs~N~l~G 116 (123)
+..+ ++|+.|+|++|.+++
T Consensus 132 l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHhCCCCceEEEcCCCcCCc
Confidence 3344 677777777777664
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=73.58 E-value=0.91 Score=38.36 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=31.4
Q ss_pred eceeEecCCCCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 63 WEGVECNDTTGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 63 w~gv~C~~~~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
|+-..|- .++.-|+|++|.+ + .++...+.++..|+.|+||+|.|+
T Consensus 376 ~p~l~~~---~hLKVLhLsyNrL---~--~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 376 FPVLVNF---KHLKVLHLSYNRL---N--SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hhhhccc---cceeeeeeccccc---c--cCCHHHHhchHHhHHHhcccchhh
Confidence 4444442 4678888888865 2 244556788888888888888875
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=73.32 E-value=2.4 Score=34.26 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.++++|+++|++ -.| |..|.+|++||+|-|.+|-|..
T Consensus 212 pLi~lDfScNki---s~i---Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 212 PLIRLDFSCNKI---SYL---PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred ceeeeecccCce---eec---chhhhhhhhheeeeeccCCCCC
Confidence 478899999875 223 8889999999999999998764
No 41
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=70.44 E-value=1.2 Score=36.21 Aligned_cols=39 Identities=31% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 72 TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 72 ~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.++++.++|.+|..+ .+..+++.-++.|+.||||.|.++
T Consensus 124 sghl~~L~L~~N~I~-----sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLIS-----SVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred ccceeEEeeeccccc-----cccHHHHHhHhhhhhhhhhhchhh
Confidence 356777777777441 112344555556666666665554
No 42
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=68.97 E-value=1.3 Score=37.43 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.....+.|.++.+ ...|..+..+++|++||+|.|.|.
T Consensus 91 ~~l~~lnL~~n~l------~~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRL------QSLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred hcchhheeccchh------hcCchhHHhhhcccccccchhccC
Confidence 3456666666654 334888999999999999999885
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=66.87 E-value=3.8 Score=31.17 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..+++.++.+ ..- ...+..+++|++|||++|.++.-
T Consensus 96 ~l~~l~l~~n~i--~~i----~~~l~~~~~L~~L~ls~N~I~~i 133 (414)
T KOG0531|consen 96 SLEALDLYDNKI--EKI----ENLLSSLVNLQVLDLSFNKITKL 133 (414)
T ss_pred ceeeeeccccch--hhc----ccchhhhhcchheeccccccccc
Confidence 456667776655 221 11256677777777777776543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=66.78 E-value=0.88 Score=37.81 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.+..|+|+.|.+ .- -..+..|++|.+|||++|.|+
T Consensus 188 ale~LnLshNk~--~~-----v~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 188 ALESLNLSHNKF--TK-----VDNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred Hhhhhccchhhh--hh-----hHHHHhcccccccccccchhc
Confidence 456677777765 21 134677899999999999875
No 45
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.38 E-value=2.8 Score=32.45 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.6
Q ss_pred CCcCCCCCcEEeCCCCeeeee
Q 033271 97 LFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.|..|++|+.|+|++|.+++-
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred HHhhcccceEeccCCCccchh
Confidence 377899999999999999874
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=65.92 E-value=6.5 Score=27.75 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
...|||++|.+ +. -..|-.++.|.+|+|++|+++
T Consensus 44 ~d~iDLtdNdl---~~----l~~lp~l~rL~tLll~nNrIt 77 (233)
T KOG1644|consen 44 FDAIDLTDNDL---RK----LDNLPHLPRLHTLLLNNNRIT 77 (233)
T ss_pred cceecccccch---hh----cccCCCccccceEEecCCcce
Confidence 34566666654 11 122445566666666666554
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=65.80 E-value=3.8 Score=29.60 Aligned_cols=15 Identities=40% Similarity=0.414 Sum_probs=8.3
Q ss_pred CCCCcEEeCCCCeee
Q 033271 101 FQQLESLDLSLNNIA 115 (123)
Q Consensus 101 l~~L~~LdLs~N~l~ 115 (123)
+++|++|+|+.|++.
T Consensus 90 ~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIK 104 (260)
T ss_pred CCceeEEeecCCccc
Confidence 355556666655543
No 48
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.10 E-value=7.8 Score=17.20 Aligned_cols=13 Identities=38% Similarity=0.348 Sum_probs=10.4
Q ss_pred CCCCcEEeCCCCe
Q 033271 101 FQQLESLDLSLNN 113 (123)
Q Consensus 101 l~~L~~LdLs~N~ 113 (123)
+++|++|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4689999999873
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=57.83 E-value=4 Score=30.52 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=10.9
Q ss_pred CCcCCCCCcEEeCCCCeee
Q 033271 97 LFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~ 115 (123)
.+..++.|+.|++++|+++
T Consensus 158 ~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred hhhccccccccccCCchhh
Confidence 3455666666666666544
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=53.98 E-value=2.4 Score=33.03 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeec
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~I 118 (123)
..|+.++|+.|-+ -.|..--.....|++|+.|+|+.|.|.-.+
T Consensus 146 ~~v~~LdLS~NL~---~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 146 PNVRDLDLSRNLF---HNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred CcceeecchhhhH---HhHHHHHHHHHhcccchhcccccccccCCc
Confidence 3688899888743 111100123457899999999999876443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=51.30 E-value=15 Score=27.48 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..++++++.+ . .+ +. ++.+.+|+.||+++|.++..+|..
T Consensus 257 l~~L~~s~n~i--~-~i---~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 257 LETLDLSNNQI--S-SI---SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cceeccccccc--c-cc---cc-ccccCccCEEeccCccccccchhh
Confidence 56677777654 1 11 23 888999999999999998877754
No 52
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=49.12 E-value=18 Score=29.74 Aligned_cols=18 Identities=50% Similarity=0.680 Sum_probs=10.5
Q ss_pred CCcCCCCCcEEeCCCCee
Q 033271 97 LFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l 114 (123)
.|.+|++|+.|||..|++
T Consensus 216 ~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRI 233 (873)
T ss_pred Hhhhcchhhhhhccccce
Confidence 344566666666666654
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=45.42 E-value=11 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=18.4
Q ss_pred CcCCCCCcEEeCCCCeeeeecCCC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..+++|+..|||.|.|.-+.|..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred HhcCCcceeeeccccccCcccchH
Confidence 567888888888888887776653
No 54
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.68 E-value=24 Score=21.25 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=20.5
Q ss_pred CcCCCCCcEEeCCCCeeeeecCCC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
|...++|-+.|.....+-|+||-+
T Consensus 22 LTd~PrL~yvdp~~~~~KgeIp~s 45 (89)
T cd01262 22 LTNGPRLIYVDPVKKVVKGEIPWS 45 (89)
T ss_pred EecCceEEEEcCCcCeEEeEeccc
Confidence 567889999999999999999954
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=34.61 E-value=6.3 Score=33.09 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.1
Q ss_pred CcCCCCCcEEeCCCCeeeee
Q 033271 98 FTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~ 117 (123)
+.+|++|+.|||++|-|.|.
T Consensus 250 ie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred HHhhhhhhccchhHhhhhcc
Confidence 66899999999999988763
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=34.45 E-value=15 Score=31.27 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.1
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
..|..++.|+.||||+|.=-+.+|.+
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred HHHhhCcceEEEECCCCCccCcCChH
Confidence 34778999999999998888888875
No 57
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.01 E-value=27 Score=28.17 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCC
Q 033271 72 TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLN 112 (123)
Q Consensus 72 ~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N 112 (123)
...|.+++|++|++...-.+ ...-..-++|.+|+||+|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~---sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDAL---SSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred Ccceeeeecccchhhchhhh---hHHHHhcchhheeecccc
Confidence 35689999999987211111 111223588999999999
No 58
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=28.41 E-value=18 Score=16.56 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.1
Q ss_pred CcCCCCCcEEeCCC
Q 033271 98 FTPFQQLESLDLSL 111 (123)
Q Consensus 98 l~~l~~L~~LdLs~ 111 (123)
+..|++|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 56789999999764
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=28.11 E-value=20 Score=27.34 Aligned_cols=13 Identities=23% Similarity=0.041 Sum_probs=8.3
Q ss_pred CcEEEEEcCCCCc
Q 033271 73 GRVIELDLALTRN 85 (123)
Q Consensus 73 ~~v~~l~L~~~~l 85 (123)
.++..|||.+|-+
T Consensus 213 ~~LevLdl~DNtf 225 (382)
T KOG1909|consen 213 PHLEVLDLRDNTF 225 (382)
T ss_pred Ccceeeecccchh
Confidence 3566677777655
No 60
>PF07151 DUF1391: Protein of unknown function (DUF1391); InterPro: IPR009821 This family consists of several Enterobacterial proteins of around 50 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi where they are often known as YdfA. The function of this family is unknown.
Probab=27.34 E-value=46 Score=17.24 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=11.0
Q ss_pred EEeCCCCe--eeeecCCC
Q 033271 106 SLDLSLNN--IAGCVENE 121 (123)
Q Consensus 106 ~LdLs~N~--l~G~IP~~ 121 (123)
.+||++|. .-|.+|.+
T Consensus 2 tidlgnneslv~gvfpn~ 19 (49)
T PF07151_consen 2 TIDLGNNESLVCGVFPNQ 19 (49)
T ss_pred cccccCCcceEEeEeeCC
Confidence 46777773 56777776
No 61
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=25.00 E-value=1e+02 Score=18.44 Aligned_cols=15 Identities=33% Similarity=0.851 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHh
Q 033271 5 KRVWVSELIFILLVV 19 (123)
Q Consensus 5 ~~~~~~~l~~~~~~~ 19 (123)
+|+|++.++++.+..
T Consensus 3 RRlwiLslLAVtLtV 17 (100)
T PF05984_consen 3 RRLWILSLLAVTLTV 17 (100)
T ss_pred hhhHHHHHHHHHHHH
Confidence 567766666554433
No 62
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.43 E-value=98 Score=16.41 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhCC
Q 033271 28 LEQERSALLQLKHFFN 43 (123)
Q Consensus 28 ~~~~~~aL~~~k~~l~ 43 (123)
..+|+++|++.++.+.
T Consensus 29 frqdrdallear~kl~ 44 (54)
T PF13260_consen 29 FRQDRDALLEARNKLF 44 (54)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3578999999887664
No 63
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=23.42 E-value=44 Score=20.66 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=18.9
Q ss_pred CcCCCCCcEEeCCCCeeeeecCCC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+...++|-+.|-..+.+-|+||-.
T Consensus 34 LTd~PrL~Yvdp~~~~~KGeI~~~ 57 (104)
T PF14593_consen 34 LTDGPRLFYVDPKKMVLKGEIPWS 57 (104)
T ss_dssp EETTTEEEEEETTTTEEEEEE--S
T ss_pred EccCCEEEEEECCCCeECcEEecC
Confidence 556689999999999999999854
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=20.87 E-value=5.6 Score=28.86 Aligned_cols=13 Identities=46% Similarity=0.473 Sum_probs=10.1
Q ss_pred CcEEEEEcCCCCc
Q 033271 73 GRVIELDLALTRN 85 (123)
Q Consensus 73 ~~v~~l~L~~~~l 85 (123)
.+|+.||++.+.+
T Consensus 42 kr~tvld~~s~r~ 54 (326)
T KOG0473|consen 42 KRVTVLDLSSNRL 54 (326)
T ss_pred ceeeeehhhhhHH
Confidence 4788888888765
Done!