Query 033271
Match_columns 123
No_of_seqs 203 out of 1167
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 19:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 2.2E-15 7.6E-20 119.4 8.4 87 26-120 8-118 (768)
2 1ogq_A PGIP-2, polygalacturona 99.6 1.9E-15 6.4E-20 108.6 7.1 88 26-121 2-96 (313)
3 4eco_A Uncharacterized protein 99.4 6.4E-13 2.2E-17 103.5 7.6 78 28-114 28-117 (636)
4 4ecn_A Leucine-rich repeat pro 99.4 3.6E-13 1.2E-17 108.6 5.8 85 26-120 265-366 (876)
5 4fcg_A Uncharacterized protein 98.8 2.9E-10 1E-14 82.0 -0.9 89 26-121 23-122 (328)
6 3e6j_A Variable lymphocyte rec 98.0 8.6E-06 2.9E-10 55.6 6.0 54 56-114 14-76 (229)
7 3rgz_A Protein brassinosteroid 98.0 5.4E-06 1.8E-10 65.8 4.2 42 75-121 682-723 (768)
8 2ifg_A High affinity nerve gro 97.7 3E-05 1E-09 55.6 4.6 54 61-119 8-73 (347)
9 2o6r_A Variable lymphocyte rec 97.7 5.6E-05 1.9E-09 49.3 5.2 26 60-85 6-40 (177)
10 3g39_A Variable lymphocyte rec 97.7 7E-05 2.4E-09 48.9 5.1 50 61-115 9-67 (170)
11 1ogq_A PGIP-2, polygalacturona 97.6 4.3E-05 1.5E-09 54.4 4.0 44 73-121 244-287 (313)
12 2o6s_A Variable lymphocyte rec 97.6 8.2E-05 2.8E-09 49.6 5.1 51 60-115 6-65 (208)
13 2z81_A CD282 antigen, TOLL-lik 97.6 7.3E-05 2.5E-09 56.5 5.1 55 60-120 3-68 (549)
14 3v47_A TOLL-like receptor 5B a 97.5 0.00014 4.7E-09 53.8 4.9 55 59-118 6-70 (455)
15 2v9t_B SLIT homolog 2 protein 97.4 0.00029 1E-08 47.7 5.4 55 60-119 10-73 (220)
16 1w8a_A SLIT protein; signaling 97.4 0.0002 6.9E-09 47.4 4.4 43 74-121 79-121 (192)
17 4ay9_X Follicle-stimulating ho 97.4 0.00014 4.6E-09 52.5 3.6 56 61-121 9-73 (350)
18 2o6q_A Variable lymphocyte rec 97.3 0.00031 1.1E-08 48.7 5.0 36 75-115 39-74 (270)
19 2z80_A TOLL-like receptor 2, v 97.3 0.00032 1.1E-08 50.4 5.1 58 57-120 26-94 (353)
20 4fcg_A Uncharacterized protein 97.3 0.00015 5.2E-09 52.0 3.3 43 74-121 254-296 (328)
21 1w8a_A SLIT protein; signaling 97.2 0.00041 1.4E-08 45.9 4.6 26 95-120 71-96 (192)
22 3m19_A Variable lymphocyte rec 97.2 0.00046 1.6E-08 47.3 4.6 19 98-116 79-97 (251)
23 2z66_A Variable lymphocyte rec 97.1 0.00059 2E-08 47.9 4.8 51 60-115 6-65 (306)
24 2wfh_A SLIT homolog 2 protein 97.1 0.00081 2.8E-08 44.6 4.8 26 95-120 71-96 (193)
25 2r9u_A Variable lymphocyte rec 97.0 0.00062 2.1E-08 44.5 4.1 21 97-117 76-96 (174)
26 2ifg_A High affinity nerve gro 97.0 0.0004 1.4E-08 49.7 3.4 42 73-119 56-97 (347)
27 2v70_A SLIT-2, SLIT homolog 2 97.0 0.00086 2.9E-08 45.3 4.6 26 95-120 122-147 (220)
28 3oja_A Leucine-rich immune mol 96.9 0.00065 2.2E-08 51.3 3.7 52 63-120 111-162 (487)
29 3g39_A Variable lymphocyte rec 96.9 0.0011 3.7E-08 43.1 4.1 41 74-119 55-95 (170)
30 2wfh_A SLIT homolog 2 protein 96.9 0.0014 4.7E-08 43.5 4.5 39 74-117 79-117 (193)
31 1xku_A Decorin; proteoglycan, 96.8 0.0021 7E-08 45.6 5.6 56 60-120 30-94 (330)
32 2ft3_A Biglycan; proteoglycan, 96.8 0.0013 4.4E-08 46.8 4.4 55 60-119 32-95 (332)
33 2v70_A SLIT-2, SLIT homolog 2 96.8 0.0012 4E-08 44.6 4.0 43 74-121 82-124 (220)
34 4eco_A Uncharacterized protein 96.8 0.0006 2.1E-08 53.0 2.7 44 73-121 206-268 (636)
35 2r9u_A Variable lymphocyte rec 96.8 0.0017 5.7E-08 42.4 4.3 38 74-116 34-71 (174)
36 3cvr_A Invasion plasmid antige 96.7 0.00029 9.9E-09 54.6 0.5 28 56-85 38-71 (571)
37 4g8a_A TOLL-like receptor 4; l 96.7 0.0016 5.3E-08 49.6 4.2 27 95-121 535-561 (635)
38 3vq2_A TLR4, TOLL-like recepto 96.7 0.0031 1.1E-07 48.2 5.7 26 95-120 73-98 (606)
39 3e6j_A Variable lymphocyte rec 96.5 0.0029 1E-07 42.8 4.4 18 98-115 131-148 (229)
40 2o6r_A Variable lymphocyte rec 96.5 0.003 1E-07 40.9 4.1 39 74-117 77-115 (177)
41 2je0_A Acidic leucine-rich nuc 96.5 0.0026 8.8E-08 40.0 3.6 41 73-120 42-82 (149)
42 2v9t_B SLIT homolog 2 protein 96.5 0.0034 1.2E-07 42.3 4.4 25 95-119 121-145 (220)
43 3rw6_A Nuclear RNA export fact 96.4 0.0012 4.3E-08 46.5 2.0 38 74-116 171-210 (267)
44 3zyi_A Leucine-rich repeat-con 96.4 0.0043 1.5E-07 46.0 5.1 52 63-119 56-116 (452)
45 4ezg_A Putative uncharacterize 96.4 0.0019 6.6E-08 42.6 2.8 42 73-119 88-129 (197)
46 3rfs_A Internalin B, repeat mo 96.4 0.0039 1.3E-07 43.2 4.3 22 98-119 201-222 (272)
47 4g8a_A TOLL-like receptor 4; l 96.4 0.0029 9.7E-08 48.2 3.9 42 74-120 495-536 (635)
48 2je0_A Acidic leucine-rich nuc 96.3 0.0029 1E-07 39.7 3.3 39 73-116 64-102 (149)
49 1dce_A Protein (RAB geranylger 96.3 0.0023 7.8E-08 49.4 3.2 40 74-120 487-527 (567)
50 2id5_A Lingo-1, leucine rich r 96.3 0.0063 2.2E-07 45.2 5.6 41 74-119 33-73 (477)
51 3oja_A Leucine-rich immune mol 96.3 0.0024 8.3E-08 48.2 3.3 37 74-117 59-95 (487)
52 2z66_A Variable lymphocyte rec 96.2 0.0046 1.6E-07 43.3 4.2 25 97-121 218-242 (306)
53 2o6s_A Variable lymphocyte rec 96.2 0.0054 1.8E-07 40.6 4.3 22 98-119 144-165 (208)
54 3j0a_A TOLL-like receptor 5; m 96.2 0.0033 1.1E-07 50.4 3.5 28 94-121 65-92 (844)
55 3m19_A Variable lymphocyte rec 96.2 0.0057 2E-07 41.8 4.3 41 74-119 84-124 (251)
56 4ecn_A Leucine-rich repeat pro 96.2 0.0014 4.7E-08 53.2 1.3 43 73-120 491-535 (876)
57 4b8c_D Glucose-repressible alc 96.1 0.0022 7.4E-08 50.9 2.1 35 74-114 271-305 (727)
58 1wwl_A Monocyte differentiatio 96.1 0.002 6.9E-08 45.5 1.8 40 73-117 149-188 (312)
59 3a79_B TLR6, VLRB.59, TOLL-lik 96.1 0.005 1.7E-07 46.9 4.0 41 74-120 77-117 (562)
60 2z7x_B TOLL-like receptor 1, v 96.1 0.0034 1.1E-07 47.2 3.0 19 97-115 64-82 (520)
61 4glp_A Monocyte differentiatio 96.1 0.0038 1.3E-07 44.0 3.0 18 102-120 251-268 (310)
62 2xot_A Amphoterin-induced prot 96.0 0.01 3.5E-07 42.8 5.2 24 96-119 82-105 (361)
63 3v47_A TOLL-like receptor 5B a 96.0 0.0067 2.3E-07 44.6 4.2 23 97-119 390-412 (455)
64 2ell_A Acidic leucine-rich nuc 96.0 0.0026 9E-08 40.7 1.8 41 73-120 49-89 (168)
65 4b8c_D Glucose-repressible alc 96.0 0.0049 1.7E-07 48.9 3.7 41 74-121 248-288 (727)
66 1xku_A Decorin; proteoglycan, 96.0 0.0078 2.7E-07 42.6 4.4 43 73-121 76-118 (330)
67 1jl5_A Outer protein YOPM; leu 96.0 0.002 6.8E-08 48.2 1.3 19 102-120 396-416 (454)
68 3rfs_A Internalin B, repeat mo 96.0 0.0079 2.7E-07 41.6 4.2 23 97-119 176-198 (272)
69 1wwl_A Monocyte differentiatio 95.9 0.0027 9.3E-08 44.9 1.8 18 102-119 149-166 (312)
70 3o53_A Protein LRIM1, AGAP0063 95.9 0.0028 9.6E-08 44.9 1.6 38 73-117 58-95 (317)
71 3a79_B TLR6, VLRB.59, TOLL-lik 95.9 0.0085 2.9E-07 45.6 4.3 44 73-121 52-95 (562)
72 2ft3_A Biglycan; proteoglycan, 95.9 0.0068 2.3E-07 43.0 3.6 43 73-121 78-120 (332)
73 3t6q_A CD180 antigen; protein- 95.8 0.0085 2.9E-07 45.8 4.3 26 95-120 74-99 (606)
74 1dce_A Protein (RAB geranylger 95.8 0.0051 1.8E-07 47.5 3.1 24 96-119 527-550 (567)
75 3vq2_A TLR4, TOLL-like recepto 95.8 0.0079 2.7E-07 45.9 4.0 23 95-117 97-119 (606)
76 3j0a_A TOLL-like receptor 5; m 95.8 0.0063 2.2E-07 48.8 3.6 42 74-120 74-115 (844)
77 2z62_A TOLL-like receptor 4, v 95.8 0.016 5.4E-07 40.0 5.2 42 74-120 201-242 (276)
78 3t6q_A CD180 antigen; protein- 95.8 0.0089 3.1E-07 45.6 4.1 42 74-120 34-75 (606)
79 2z63_A TOLL-like receptor 4, v 95.7 0.011 3.7E-07 44.6 4.3 25 96-120 512-536 (570)
80 1ozn_A Reticulon 4 receptor; N 95.7 0.012 4.2E-07 40.7 4.3 22 98-119 173-194 (285)
81 2ell_A Acidic leucine-rich nuc 95.7 0.003 1E-07 40.5 1.0 23 96-118 114-136 (168)
82 2xot_A Amphoterin-induced prot 95.6 0.012 4.2E-07 42.4 4.3 25 96-120 106-130 (361)
83 2z62_A TOLL-like receptor 4, v 95.6 0.012 4.2E-07 40.5 4.1 19 98-116 72-90 (276)
84 4glp_A Monocyte differentiatio 95.6 0.0075 2.6E-07 42.5 3.0 38 74-116 146-183 (310)
85 4ay9_X Follicle-stimulating ho 95.6 0.014 4.8E-07 41.8 4.5 26 95-121 195-220 (350)
86 1ziw_A TOLL-like receptor 3; i 95.6 0.011 3.9E-07 45.7 4.1 40 74-118 26-65 (680)
87 2z7x_B TOLL-like receptor 1, v 95.5 0.0042 1.4E-07 46.6 1.5 44 73-121 21-64 (520)
88 1ozn_A Reticulon 4 receptor; N 95.5 0.014 4.9E-07 40.4 4.1 19 95-113 73-91 (285)
89 1a9n_A U2A', U2A'; complex (nu 95.4 0.014 4.7E-07 37.7 3.6 36 74-114 65-100 (176)
90 2z81_A CD282 antigen, TOLL-lik 95.4 0.0077 2.6E-07 45.4 2.7 41 73-120 451-491 (549)
91 2z63_A TOLL-like receptor 4, v 95.4 0.013 4.5E-07 44.2 4.0 25 95-119 487-511 (570)
92 1p9a_G Platelet glycoprotein I 95.3 0.021 7E-07 40.1 4.4 17 99-115 169-185 (290)
93 2xwt_C Thyrotropin receptor; s 95.3 0.022 7.4E-07 38.4 4.4 35 74-113 32-66 (239)
94 1p9a_G Platelet glycoprotein I 95.3 0.02 7E-07 40.1 4.4 18 98-115 144-161 (290)
95 1a9n_A U2A', U2A'; complex (nu 95.3 0.0056 1.9E-07 39.6 1.3 36 74-115 89-126 (176)
96 3o6n_A APL1; leucine-rich repe 95.3 0.021 7.1E-07 41.3 4.4 22 98-119 137-158 (390)
97 1ziw_A TOLL-like receptor 3; i 95.3 0.017 5.7E-07 44.8 4.1 26 95-120 398-423 (680)
98 3o53_A Protein LRIM1, AGAP0063 95.2 0.017 5.9E-07 40.8 3.9 39 75-118 122-160 (317)
99 3g06_A SSPH2 (leucine-rich rep 95.2 0.0073 2.5E-07 47.2 1.9 40 75-120 263-302 (622)
100 3zyi_A Leucine-rich repeat-con 95.2 0.018 6.1E-07 42.7 3.9 12 74-85 197-208 (452)
101 3cvr_A Invasion plasmid antige 95.1 0.0081 2.8E-07 46.5 2.0 39 76-120 210-248 (571)
102 4ezg_A Putative uncharacterize 95.1 0.0081 2.8E-07 39.5 1.7 35 74-113 113-147 (197)
103 1jl5_A Outer protein YOPM; leu 95.1 0.022 7.5E-07 42.6 4.1 39 74-120 132-170 (454)
104 3oja_B Anopheles plasmodium-re 95.0 0.025 8.5E-07 43.5 4.4 22 98-119 143-164 (597)
105 3zyj_A Leucine-rich repeat-con 95.0 0.025 8.6E-07 41.7 4.3 12 74-85 186-197 (440)
106 3oja_B Anopheles plasmodium-re 95.0 0.02 6.9E-07 44.0 3.8 23 97-119 94-116 (597)
107 2o6q_A Variable lymphocyte rec 94.9 0.031 1.1E-06 38.5 4.3 19 98-116 153-171 (270)
108 2id5_A Lingo-1, leucine rich r 94.9 0.035 1.2E-06 41.2 4.8 24 97-120 99-122 (477)
109 2xwt_C Thyrotropin receptor; s 94.9 0.037 1.3E-06 37.3 4.5 43 73-121 179-223 (239)
110 4fmz_A Internalin; leucine ric 94.8 0.0084 2.9E-07 42.6 1.2 24 96-119 305-328 (347)
111 3o6n_A APL1; leucine-rich repe 94.8 0.026 8.8E-07 40.8 3.8 18 98-115 113-130 (390)
112 3zyj_A Leucine-rich repeat-con 94.8 0.028 9.7E-07 41.4 4.0 21 96-116 249-269 (440)
113 2z80_A TOLL-like receptor 2, v 94.8 0.023 7.8E-07 40.6 3.4 18 98-115 120-137 (353)
114 1ds9_A Outer arm dynein; leuci 94.7 0.0022 7.6E-08 42.4 -2.0 40 73-120 48-87 (198)
115 1xeu_A Internalin C; cellular 94.6 0.031 1.1E-06 38.6 3.7 37 73-116 63-99 (263)
116 3rfe_A Platelet glycoprotein I 94.4 0.036 1.2E-06 34.5 3.3 37 74-115 32-68 (130)
117 1xeu_A Internalin C; cellular 94.2 0.042 1.4E-06 37.9 3.6 19 98-116 124-142 (263)
118 3rw6_A Nuclear RNA export fact 93.9 0.034 1.2E-06 39.1 2.6 41 73-120 196-238 (267)
119 1ds9_A Outer arm dynein; leuci 93.6 0.0065 2.2E-07 40.0 -1.4 37 74-116 71-107 (198)
120 1o6v_A Internalin A; bacterial 93.6 0.053 1.8E-06 40.2 3.4 21 98-118 349-369 (466)
121 3g06_A SSPH2 (leucine-rich rep 93.3 0.0067 2.3E-07 47.4 -2.0 20 100-120 79-98 (622)
122 1h6t_A Internalin B; cell adhe 93.1 0.066 2.3E-06 37.4 3.1 19 98-116 152-170 (291)
123 2ast_B S-phase kinase-associat 93.0 0.012 4E-07 41.6 -1.0 10 75-84 95-104 (336)
124 3bz5_A Internalin-J, INLJ; leu 92.9 0.098 3.4E-06 39.0 3.9 36 74-117 213-248 (457)
125 1m9s_A Internalin B; cell inva 92.7 0.074 2.5E-06 41.4 3.1 21 98-118 149-169 (605)
126 3bz5_A Internalin-J, INLJ; leu 92.6 0.091 3.1E-06 39.2 3.4 36 73-116 64-99 (457)
127 1h6t_A Internalin B; cell adhe 92.5 0.11 3.7E-06 36.3 3.5 19 98-116 108-126 (291)
128 1h6u_A Internalin H; cell adhe 92.2 0.13 4.5E-06 36.1 3.6 12 74-85 86-97 (308)
129 1h6u_A Internalin H; cell adhe 92.1 0.12 4.2E-06 36.3 3.4 37 73-116 63-99 (308)
130 1o6v_A Internalin A; bacterial 91.9 0.13 4.3E-06 38.2 3.4 36 74-116 354-389 (466)
131 1m9s_A Internalin B; cell inva 91.8 0.12 4.2E-06 40.1 3.3 19 98-116 171-189 (605)
132 2ca6_A RAN GTPase-activating p 91.6 0.027 9.2E-07 40.7 -0.5 12 74-85 245-256 (386)
133 2ca6_A RAN GTPase-activating p 91.4 0.049 1.7E-06 39.3 0.7 40 74-116 217-258 (386)
134 3goz_A Leucine-rich repeat-con 90.9 0.061 2.1E-06 38.6 0.7 41 74-119 52-97 (362)
135 4fmz_A Internalin; leucine ric 90.7 0.15 5.2E-06 35.9 2.7 34 75-115 313-346 (347)
136 2ast_B S-phase kinase-associat 90.6 0.11 3.6E-06 36.5 1.8 39 73-117 70-108 (336)
137 3goz_A Leucine-rich repeat-con 90.6 0.037 1.3E-06 39.7 -0.6 42 73-119 80-126 (362)
138 1z7x_W Ribonuclease inhibitor; 89.0 0.075 2.6E-06 39.0 0.0 22 96-117 392-413 (461)
139 1z7x_W Ribonuclease inhibitor; 88.7 0.14 4.7E-06 37.5 1.2 40 74-116 86-127 (461)
140 3un9_A NLR family member X1; l 82.5 0.29 9.8E-06 35.6 0.3 14 101-114 210-223 (372)
141 1io0_A Tropomodulin; LRR prote 82.3 0.32 1.1E-05 31.7 0.4 43 73-116 65-107 (185)
142 3un9_A NLR family member X1; l 80.0 0.24 8.2E-06 36.0 -0.9 19 98-116 179-197 (372)
143 3e4g_A ATP synthase subunit S, 78.4 1.6 5.4E-05 28.6 2.8 36 73-113 61-96 (176)
144 3sb4_A Hypothetical leucine ri 77.7 1.6 5.5E-05 30.6 2.9 40 74-120 102-141 (329)
145 3ogk_B Coronatine-insensitive 77.5 0.51 1.8E-05 35.6 0.2 17 100-116 511-527 (592)
146 2ra8_A Uncharacterized protein 73.9 0.63 2.2E-05 33.8 -0.1 17 99-115 304-320 (362)
147 1io0_A Tropomodulin; LRR prote 71.1 1.1 3.8E-05 29.0 0.6 41 74-115 94-136 (185)
148 3sb4_A Hypothetical leucine ri 70.9 5 0.00017 28.0 4.0 34 74-112 227-260 (329)
149 3ogk_B Coronatine-insensitive 63.0 1.7 5.7E-05 32.8 0.2 19 98-116 216-234 (592)
150 2p1m_B Transport inhibitor res 59.8 1.1 3.7E-05 33.8 -1.4 16 100-115 479-494 (594)
151 1pgv_A TMD-1, tropomodulin TMD 59.4 1.4 4.8E-05 29.4 -0.7 13 73-85 70-82 (197)
152 2p1m_B Transport inhibitor res 55.6 1.8 6.2E-05 32.5 -0.7 17 100-116 154-170 (594)
153 3ox7_P MH027; urokinase-type p 40.8 9.7 0.00033 15.7 0.7 10 58-67 5-14 (23)
154 4fdw_A Leucine rich hypothetic 38.8 33 0.0011 24.9 3.8 21 95-115 173-193 (401)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=2.2e-15 Score=119.43 Aligned_cols=87 Identities=28% Similarity=0.440 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCceeceeEecCCCCcEEEEEcCCCCcccccc---cc---------
Q 033271 26 GCLEQERSALLQLKHFFN-DDHCLQNWVDDENYSDCCQWEGVECNDTTGRVIELDLALTRNWESAE---WY--------- 92 (123)
Q Consensus 26 ~~~~~~~~aL~~~k~~l~-~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~l~~~G~---~~--------- 92 (123)
...++|++||++||+.+. +. .+.+|+ .+.+||+|.||+|+ .++|+.|+|+++++ .|. +.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l--~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPL--NVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCC--CEEHHHHHHHTTTCTTC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCc--CCccCccChhHhccCcc
Confidence 345789999999999998 44 789998 56789999999998 58999999999887 664 20
Q ss_pred -----------cCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 93 -----------MNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 93 -----------~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
-.|+.++.+++|++|||++|+++|.||.
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGG
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCC
Confidence 0135688889999999999999998886
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=1.9e-15 Score=108.64 Aligned_cols=88 Identities=32% Similarity=0.525 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCce--eceeEecCCC--CcEEEEEcCCCCccccc--ccccCCcCCc
Q 033271 26 GCLEQERSALLQLKHFFNDDHCLQNWVDDENYSDCCQ--WEGVECNDTT--GRVIELDLALTRNWESA--EWYMNASLFT 99 (123)
Q Consensus 26 ~~~~~~~~aL~~~k~~l~~~~~l~~W~~~~~~~~~C~--w~gv~C~~~~--~~v~~l~L~~~~l~~~G--~~~~~p~~l~ 99 (123)
.|.++|++||++||+++..+..+.+|. .+.+||. |.||.|+... ++|+.|+++++++ .| .+ |..++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--~~~~~~---~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--PKPYPI---PSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--SSCEEC---CGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCc--cCCccc---ChhHh
Confidence 478899999999999997333688997 5678998 9999998633 7999999999988 66 55 66677
Q ss_pred CCCCCcEEeCCC-CeeeeecCCC
Q 033271 100 PFQQLESLDLSL-NNIAGCVENE 121 (123)
Q Consensus 100 ~l~~L~~LdLs~-N~l~G~IP~~ 121 (123)
++++|++|||++ |+++|.+|.+
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~ 96 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPA 96 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGG
T ss_pred CCCCCCeeeCCCCCcccccCChh
Confidence 777777777773 7777777653
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.39 E-value=6.4e-13 Score=103.54 Aligned_cols=78 Identities=24% Similarity=0.263 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhCC--CCCC-------CCCCCCCCCCCCCcee---ceeEecCCCCcEEEEEcCCCCcccccccccCC
Q 033271 28 LEQERSALLQLKHFFN--DDHC-------LQNWVDDENYSDCCQW---EGVECNDTTGRVIELDLALTRNWESAEWYMNA 95 (123)
Q Consensus 28 ~~~~~~aL~~~k~~l~--~~~~-------l~~W~~~~~~~~~C~w---~gv~C~~~~~~v~~l~L~~~~l~~~G~~~~~p 95 (123)
...|+.||.+++.++. ++.. ..+|+ ...++|.| .||.|+. .+||++|+|+++++ .|.+ |
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l--~g~l---p 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGA--SGRV---P 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCC--EEEE---C
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecCccc--CCcC---C
Confidence 3579999999999987 2332 23787 56789999 9999986 48999999999999 9988 8
Q ss_pred cCCcCCCCCcEEeCCCCee
Q 033271 96 SLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l 114 (123)
+.+++|++|++|||++|++
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGE 117 (636)
T ss_dssp GGGGGCTTCCEEESCCGGG
T ss_pred hHHhcCccceEEECcCCcc
Confidence 8999999999999999955
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=3.6e-13 Score=108.59 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCC--CCCCC--cee------------ceeEecCCCCcEEEEEcCCCCccccc
Q 033271 26 GCLEQERSALLQLKHFFNDDHCLQNWVDDE--NYSDC--CQW------------EGVECNDTTGRVIELDLALTRNWESA 89 (123)
Q Consensus 26 ~~~~~~~~aL~~~k~~l~~~~~l~~W~~~~--~~~~~--C~w------------~gv~C~~~~~~v~~l~L~~~~l~~~G 89 (123)
.....|+.||++||+++..+ +|+... ...+| |.| .||.|+. .++|++|+|+++++ .|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L--~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA--KG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC--EE
T ss_pred ccchHHHHHHHHHHHHcCCC----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC--CC
Confidence 34467999999999999722 786211 01356 999 9999986 68999999999999 99
Q ss_pred ccccCCcCCcCCCCCcEEeC-CCCeeeeecCC
Q 033271 90 EWYMNASLFTPFQQLESLDL-SLNNIAGCVEN 120 (123)
Q Consensus 90 ~~~~~p~~l~~l~~L~~LdL-s~N~l~G~IP~ 120 (123)
.+ |+.|++|++|++||| ++|.++|.+|-
T Consensus 338 ~i---p~~l~~L~~L~~LdLss~N~lsG~~~~ 366 (876)
T 4ecn_A 338 RV---PDAIGQLTELKVLSFGTHSETVSGRLF 366 (876)
T ss_dssp EE---CGGGGGCTTCCEEESCCTTHHHHTTCB
T ss_pred cC---chHHhccccceEeeecccccccccccc
Confidence 88 889999999999999 99999999664
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.81 E-value=2.9e-10 Score=82.04 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHhCC--CCCCCCCCCC-CCCCCCCceeceeEecC--------CCCcEEEEEcCCCCcccccccccC
Q 033271 26 GCLEQERSALLQLKHFFN--DDHCLQNWVD-DENYSDCCQWEGVECND--------TTGRVIELDLALTRNWESAEWYMN 94 (123)
Q Consensus 26 ~~~~~~~~aL~~~k~~l~--~~~~l~~W~~-~~~~~~~C~w~gv~C~~--------~~~~v~~l~L~~~~l~~~G~~~~~ 94 (123)
....+|+++|++||..+. +.+....|.. .....++|.|.|+.|+. ...+|+.|+|+++++ . .+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l--~-~l--- 96 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL--P-QF--- 96 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC--S-SC---
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc--h-hc---
Confidence 345678999999999874 3334556730 01456789999999952 246899999999876 3 33
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
|..++++++|++|||++|.++ .||..
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~-~lp~~ 122 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM-ELPDT 122 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC-CCCSC
T ss_pred ChhhhhCCCCCEEECCCCCcc-chhHH
Confidence 555666666777777766666 66653
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=8.6e-06 Score=55.63 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=32.4
Q ss_pred CCCCCceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCee
Q 033271 56 NYSDCCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 56 ~~~~~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l 114 (123)
.....|+|.++.|+.. ...++.|+++++.+ .+.. +..+..+++|++|+|++|+|
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i--~~~~---~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQI--TKLE---PGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCC--CCCC---TTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCcc--CccC---HHHhhCccCCcEEECCCCCC
Confidence 4667899999999741 13577889988877 3321 33334444444444444444
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.97 E-value=5.4e-06 Score=65.79 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..++|++|++ .|.+ |..++.++.|++|||++|+|+|.||..
T Consensus 682 L~~LdLs~N~l--~g~i---p~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 682 LNILDLSSNKL--DGRI---PQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCEEECCSSCC--EECC---CGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCEEECCCCcc--cCcC---ChHHhCCCCCCEEECcCCcccccCCCc
Confidence 44455555555 4544 666666777777777777777777754
No 8
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=3e-05 Score=55.63 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=29.4
Q ss_pred ceeceeEecCC-----------CCcEEEEEcCC-CCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 61 CQWEGVECNDT-----------TGRVIELDLAL-TRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 61 C~w~gv~C~~~-----------~~~v~~l~L~~-~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
|.|..+.|.+. ...++.|+|++ |.+ .+- .+..|..|++|++|||++|+|+|.+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHL---ELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEE---CGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCc---ChhHhccccCCCEEECCCCccceeCH
Confidence 66777777642 12366777775 554 221 13345555555555555555555444
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.71 E-value=5.6e-05 Score=49.27 Aligned_cols=26 Identities=19% Similarity=0.453 Sum_probs=17.4
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCc
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRN 85 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l 85 (123)
.|.|.++.|+.. ...++.|+++++++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l 40 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKL 40 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCC
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcc
Confidence 467888888641 13567788887765
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.66 E-value=7e-05 Score=48.86 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=24.1
Q ss_pred ceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 61 CQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 61 C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
|.|..+.|+.. ...+..|+|++|++ .+-. +..+..+++|++|||++|+|+
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i--~~~~---~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQI--TKLE---PGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCC--CCCC---TTTTTTCTTCSEEECCSSCCC
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcC--CccC---hhhhcCcccCCEEECCCCCcC
Confidence 55666666531 12456677777665 3221 333444444444444444444
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.63 E-value=4.3e-05 Score=54.42 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
..+..|+++++.+ .|.+ |..+..+++|++|||++|+++|.||..
T Consensus 244 ~~L~~L~Ls~N~l--~~~~---p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 244 KNLNGLDLRNNRI--YGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp TTCCEEECCSSCC--EECC---CGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred CCCCEEECcCCcc--cCcC---ChHHhcCcCCCEEECcCCcccccCCCC
Confidence 4577788888877 6665 778999999999999999999999975
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.62 E-value=8.2e-05 Score=49.64 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.|.|.++.|+.. ..+++.|+++++++ .+- .+..+..+++|++|+|++|+++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l--~~~---~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSL--KSL---PNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCC--CCC---CTTTTTTCTTCSEEECCSSCCC
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCcc--CcC---ChhhhcccccCcEEECCCCccC
Confidence 478999999742 13578889888876 321 1222344444444444444444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.60 E-value=7.3e-05 Score=56.54 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=35.8
Q ss_pred CceeceeEecCC-----------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 60 CCQWEGVECNDT-----------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 60 ~C~w~gv~C~~~-----------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.|.|.|+ |+.. ..+++.|+++++++ .+.. +..+.++++|++|||++|++++..|.
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l--~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKI--TYIG---HGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCC--CEEC---SSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCcc--CccC---hhhhhcCCcccEEECCCCCcCccChh
Confidence 5888888 7631 13688899998876 4322 45566666666666666666665553
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.46 E-value=0.00014 Score=53.79 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=28.5
Q ss_pred CCceece--eEecCCC--------CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeec
Q 033271 59 DCCQWEG--VECNDTT--------GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 59 ~~C~w~g--v~C~~~~--------~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~I 118 (123)
..|.|.+ +.|+... .+++.|+++++.+ .+.. |..++++++|++|+|++|.+.+.|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i--~~~~---~~~~~~l~~L~~L~L~~n~~~~~i 70 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSI--AELN---ETSFSRLQDLQFLKVEQQTPGLVI 70 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCC--CEEC---TTTTSSCTTCCEEECCCCSTTCEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCcc--CcCC---hhHhccCccccEEECcCCcccceE
Confidence 4566655 7776421 4578888888876 3221 333444444444444444444444
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.38 E-value=0.00029 Score=47.65 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=29.4
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.|.|..+.|... ...++.|+++++++ .+- .+..+..+++|++|+|++|++++..|
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i--~~i---~~~~~~~l~~L~~L~Ls~N~i~~~~~ 73 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTI--KVI---PPGAFSPYKKLRRIDLSNNQISELAP 73 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCC--CEE---CTTSSTTCTTCCEEECCSSCCCEECT
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcC--CCc---CHhHhhCCCCCCEEECCCCcCCCcCH
Confidence 367888888631 12577788888766 221 12234444445555555544444433
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.38 E-value=0.0002 Score=47.42 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
++..|+|++|.+ .+. .+..+..+++|++|||++|+++|.+|..
T Consensus 79 ~L~~L~Ls~N~l--~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 79 HIQELQLGENKI--KEI---SNKMFLGLHQLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp TCCEEECCSCCC--CEE---CSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred cCCEEECCCCcC--Ccc---CHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence 455566666555 332 1444666777777777777777766653
No 17
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.35 E-value=0.00014 Score=52.52 Aligned_cols=56 Identities=25% Similarity=0.509 Sum_probs=43.9
Q ss_pred ceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 61 CQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 61 C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
|.+..|.|+.. ...+++|+|+++++ . .+++..|.++++|++|||++|++.+.||..
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i--~---~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKL--R---VIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCC--S---EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcC--C---CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 78889999741 13578899999877 3 223456899999999999999999998864
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.32 E-value=0.00031 Score=48.74 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
++.|+++++++ .+ +.+..+..+++|++|+|++|.++
T Consensus 39 l~~L~l~~n~l--~~---~~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 39 TKKLDLQSNKL--SS---LPSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CSEEECCSSCC--SC---CCTTSSSSCTTCCEEECCSSCCS
T ss_pred CCEEECcCCCC--Ce---eCHHHhcCCCCCCEEECCCCccC
Confidence 45555555544 11 11234555566666666666555
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.30 E-value=0.00032 Score=50.42 Aligned_cols=58 Identities=29% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCCCceeceeEecCC-----------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 57 YSDCCQWEGVECNDT-----------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 57 ~~~~C~w~gv~C~~~-----------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
...+|.|.|+ |+.. ...++.|+++++++ .+- .+..+.++++|++|+|++|++++..|.
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i--~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRI--TYI---SNSDLQRCVNLQALVLTSNGINTIEED 94 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCC--CEE---CTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcC--ccc---CHHHhccCCCCCEEECCCCccCccCHh
Confidence 3456777776 5421 13577888888876 321 133566666666666666666665443
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.29 E-value=0.00015 Score=51.97 Aligned_cols=43 Identities=21% Similarity=0.019 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
++..|+++++++ .+.+ |..+.++++|++|||++|++.|.||..
T Consensus 254 ~L~~L~L~~n~~--~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 254 PLKRLILKDCSN--LLTL---PLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCEEECTTCTT--CCBC---CTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCEEECCCCCc--hhhc---chhhhcCCCCCEEeCCCCCchhhccHH
Confidence 455666666555 5554 666777888888888888888887764
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.22 E-value=0.00041 Score=45.89 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=16.4
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
|..+..+++|++|+|++|+|++..|.
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred HhHcCCcccCCEEECCCCcCCccCHH
Confidence 44566666666666666666665554
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.18 E-value=0.00046 Score=47.33 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=9.5
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|+|++|++++
T Consensus 79 ~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp TTTCTTCCEEECTTSCCCC
T ss_pred hccCCcCCEEECCCCcccc
Confidence 4445555555555555543
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.11 E-value=0.00059 Score=47.91 Aligned_cols=51 Identities=24% Similarity=0.441 Sum_probs=37.5
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.|.|.++.|+.. ...++.|+++++++ . .+ ++..+.++++|++|+|++|.++
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l--~-~i--~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKL--Q-SL--PHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCC--C-CC--CTTTTTTCTTCSEEECCSSCCC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCcc--C-cc--CHhHhhccccCCEEECCCCccC
Confidence 478999999742 13688999999876 3 22 2334678888888888888876
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.07 E-value=0.00081 Score=44.63 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=17.4
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+..|..+++|++|||++|++++-.|.
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred HhHccCCCCCCEEECCCCccCEeCHH
Confidence 34466777777777777777765553
No 25
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.05 E-value=0.00062 Score=44.51 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=13.0
Q ss_pred CCcCCCCCcEEeCCCCeeeee
Q 033271 97 LFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..+++|++|||++|+|++-
T Consensus 76 ~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCC
T ss_pred HhCCcchhhEEECCCCcccee
Confidence 345666666666666666643
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.04 E-value=0.0004 Score=49.69 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.++..|+|++|++ .|-. |..|.+|++|++|||++|+|++-.|
T Consensus 56 ~~L~~L~l~~N~l--~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 56 GELRNLTIVKSGL--RFVA---PDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCCSEEECCSSCC--CEEC---TTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred cCCCEEECCCCcc--ceeC---HHHhcCCcCCCEEeCCCCccceeCH
Confidence 4688999999988 6543 6678999999999999999996443
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.00 E-value=0.00086 Score=45.32 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=16.7
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
|..+..+++|++|||++|++++..|.
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred HhHcCCCccCCEEECCCCcCCEECHH
Confidence 44566666677777777766666554
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.91 E-value=0.00065 Score=51.28 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=29.9
Q ss_pred eceeEecCCCCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 63 WEGVECNDTTGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 63 w~gv~C~~~~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+.++.|.. -..+..|+++++.+ .+.. |..++.+++|++|||++|.++|.+|.
T Consensus 111 l~~~~~~~-l~~L~~L~L~~N~l--~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 111 ISRVSCSR-GQGKKNIYLANNKI--TMLR---DLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp CCCEEECC-CSSCEEEECCSSCC--CSGG---GBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred CCCCCccc-cCCCCEEECCCCCC--CCCC---chhhcCCCCCCEEECCCCCCCCcChH
Confidence 34444433 24567777777766 4432 44556666666666666666665553
No 29
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.88 E-value=0.0011 Score=43.09 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
++..|+|++|.+ .+- .+..+..+++|++|+|++|+|++-.|
T Consensus 55 ~L~~L~Ls~N~l--~~l---~~~~f~~l~~L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 55 QLTRLDLDNNQL--TVL---PAGVFDKLTQLTQLSLNDNQLKSIPR 95 (170)
T ss_dssp TCSEEECCSSCC--CCC---CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCEEECCCCCc--Ccc---ChhhccCCCCCCEEECCCCccCEeCH
Confidence 466666666655 321 13334566666666666666665333
No 30
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.85 E-value=0.0014 Score=43.50 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..|+|++|.+ .+ +.+..|..+++|++|+|++|.+++-
T Consensus 79 ~L~~L~Ls~N~l--~~---i~~~~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 79 QLLTLILSYNRL--RC---IPPRTFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp TCCEEECCSSCC--CB---CCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCEEECCCCcc--CE---eCHHHhCCCCCCCEEECCCCCCCee
Confidence 345555555554 22 1244577788888888888887753
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.83 E-value=0.0021 Score=45.64 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=36.0
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.|+|..+.|... ...++.++++++++ .+- .+..+.++++|++|+|++|++++..|.
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i--~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKI--TEI---KDGDFKNLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCC--CCB---CTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcC--CEe---ChhhhccCCCCCEEECCCCcCCeeCHH
Confidence 467888888631 13577889988876 332 133566666666666666666665554
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.81 E-value=0.0013 Score=46.79 Aligned_cols=55 Identities=29% Similarity=0.314 Sum_probs=34.7
Q ss_pred CceeceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 60 CCQWEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 60 ~C~w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.|.|..+.|... ...++.|+++++++ .+- .+..+.++++|++|+|++|.+++..|
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i--~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI--SEL---RKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCC--CEE---CTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcC--Ccc---CHhHhhCCCCCcEEECCCCccCccCH
Confidence 378999998641 13578899998876 321 13445666666666666666665544
No 33
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.81 E-value=0.0012 Score=44.62 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
++..|+|++|.+ .+- .+..+..+++|++|+|++|++++..|..
T Consensus 82 ~L~~L~Ls~N~l--~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 82 GVNEILLTSNRL--ENV---QHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp TCCEEECCSSCC--CCC---CGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred CCCEEECCCCcc--Ccc---CHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 455566666554 322 2445777888888888888888776653
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.80 E-value=0.0006 Score=53.04 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCcccccc-----------------cccCCcCCc--CCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAE-----------------WYMNASLFT--PFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~-----------------~~~~p~~l~--~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.++..|+|+++.+ .|. + |..++ ++++|++|+|++|++.|.+|..
T Consensus 206 ~~L~~L~Ls~n~l--~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 206 TKLRQFYMGNSPF--VAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp TTCCEEEEESCCC--CGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred cCCCEEECcCCcc--ccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCccChHH
Confidence 4577888888877 663 4 67777 7888888888888888887764
No 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.76 E-value=0.0017 Score=42.42 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+..|+|++|.+ .+-. |..+..+++|++|||++|+|++
T Consensus 34 ~L~~L~Ls~N~l--~~~~---~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 34 DKQRLWLNNNQI--TKLE---PGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp TCSEEECCSSCC--CCCC---TTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcEEEeCCCCc--cccC---HHHhcCCcCCCEEECCCCCCCc
Confidence 355566666655 3322 4455666666666666666665
No 36
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.74 E-value=0.00029 Score=54.59 Aligned_cols=28 Identities=18% Similarity=0.007 Sum_probs=19.8
Q ss_pred CCCCCc-----eecee-EecCCCCcEEEEEcCCCCc
Q 033271 56 NYSDCC-----QWEGV-ECNDTTGRVIELDLALTRN 85 (123)
Q Consensus 56 ~~~~~C-----~w~gv-~C~~~~~~v~~l~L~~~~l 85 (123)
...++| .|.|+ .|.. .+++.|+++++++
T Consensus 38 ~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L 71 (571)
T 3cvr_A 38 KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNL 71 (571)
T ss_dssp TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCC
T ss_pred ccCCccccccchhhhcccccc--CCccEEEeCCCCC
Confidence 344567 68888 6763 4678888888876
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.68 E-value=0.0016 Score=49.63 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=17.9
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..+..+++|++|||++|+|++.+|..
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 344666777777777777777766653
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.65 E-value=0.0031 Score=48.17 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=15.0
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
|..|.++++|++|||++|.+++.+|.
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred HHHhhchhhcCEeECCCCcccccChh
Confidence 33455566666666666666655554
No 39
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.52 E-value=0.0029 Score=42.84 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=8.5
Q ss_pred CcCCCCCcEEeCCCCeee
Q 033271 98 FTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~ 115 (123)
+..+++|++|+|++|+|+
T Consensus 131 ~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp GGGCTTCSEEECCSSCCC
T ss_pred cccCCCCCEEECCCCcCC
Confidence 344444444444444444
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.48 E-value=0.003 Score=40.87 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..|+++++.+ .+- .+..+..+++|++|||++|++++-
T Consensus 77 ~L~~L~l~~N~l--~~~---~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 77 KLTILYLHENKL--QSL---PNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp TCCEEECCSSCC--CCC---CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccCEEECCCCCc--ccc---CHHHhhCCcccCEEECcCCcceEe
Confidence 466666666655 332 234467778888888888887743
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.47 E-value=0.0026 Score=39.95 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.+++.++++++.+ .+. ..+..+++|++|||++|.+++.+|.
T Consensus 42 ~~L~~L~l~~n~l--~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 42 EELEFLSTINVGL--TSI-----ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp TTCCEEECTTSCC--CCC-----TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred CCCcEEECcCCCC--CCc-----hhhhcCCCCCEEECCCCcccchHHH
Confidence 4688999999877 431 5588899999999999999987764
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.46 E-value=0.0034 Score=42.31 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=14.1
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
+..+..+++|++|||++|+|++..|
T Consensus 121 ~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred HHHcCCCCCCCEEECCCCcCCEECH
Confidence 3445556666666666666655443
No 43
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.42 E-value=0.0012 Score=46.46 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCccccc--ccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESA--EWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G--~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+..|+|++|.+ .+ .+ +..+..+++|+.|||++|+|++
T Consensus 171 ~L~~L~Ls~N~l--~~l~~l---~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 171 ELLSLNLSNNRL--YRLDDM---SSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TCCEEECTTSCC--CCCGGG---TTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCEEECCCCCC--CCCccc---hhHHhhCCCCCEEECCCCccCC
Confidence 466677777666 33 22 2333344555555555554443
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=96.42 E-value=0.0043 Score=46.00 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=30.0
Q ss_pred eceeEecCC---------CCcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 63 WEGVECNDT---------TGRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 63 w~gv~C~~~---------~~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
|..+.|... ...++.|+|+++++ .+- .+..|.++++|++|+|++|++++..|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i--~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~ 116 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNI--QMI---QADTFRHLHHLEVLQLGRNSIRQIEV 116 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCC--CEE---CTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcC--ceE---CHHHcCCCCCCCEEECCCCccCCcCh
Confidence 466777631 13578888888876 332 14445555555555555555555443
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=96.41 E-value=0.0019 Score=42.60 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..+..++++++.+ .+.. +..++.+++|++|+|++|.+++.+|
T Consensus 88 ~~L~~L~l~~n~l--~~~~---~~~l~~l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 88 SNLERLRIMGKDV--TSDK---IPNLSGLTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp TTCCEEEEECTTC--BGGG---SCCCTTCTTCCEEECCSSBCBGGGH
T ss_pred CCCCEEEeECCcc--Cccc---ChhhcCCCCCCEEEecCCccCcHhH
Confidence 3466777777766 4332 5567777777777777777776544
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=96.38 E-value=0.0039 Score=43.21 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=11.2
Q ss_pred CcCCCCCcEEeCCCCeeeeecC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP 119 (123)
+..+++|++|+|++|.++|.+|
T Consensus 201 ~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT
T ss_pred HhCCcCCCEEEccCCCccccCc
Confidence 4455555555555555544443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.36 E-value=0.0029 Score=48.16 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.++.|+|+++++ .+- .|..|.++++|++|+|++|+|++-.|.
T Consensus 495 ~L~~L~Ls~N~L--~~l---~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 536 (635)
T 4g8a_A 495 NLTFLDLSQCQL--EQL---SPTAFNSLSSLQVLNMSHNNFFSLDTF 536 (635)
T ss_dssp TCCEEECTTSCC--CEE---CTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred ccCEEECCCCcc--CCc---ChHHHcCCCCCCEEECCCCcCCCCChh
Confidence 456666666665 432 256677888888888888888776553
No 48
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.34 E-value=0.0029 Score=39.69 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.++..++++++.+ .+.+ |..+..+++|++|++++|.+++
T Consensus 64 ~~L~~L~Ls~n~i--~~~~---~~~~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 64 NKLKKLELSDNRV--SGGL---EVLAEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECCSSCC--CSCT---HHHHHHCTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCcc--cchH---HHHhhhCCCCCEEECCCCcCCC
Confidence 4688999999987 5544 6667779999999999999987
No 49
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.34 E-value=0.0023 Score=49.42 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeec-CC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCV-EN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~I-P~ 120 (123)
++..|+|++|.+ .+ + | .++.+++|++|+|++|+|++.+ |.
T Consensus 487 ~L~~L~Ls~N~l--~~-l---p-~l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 487 CLEVLQASDNAL--EN-V---D-GVANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp TCCEEECCSSCC--CC-C---G-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred CCCEEECCCCCC--CC-C---c-ccCCCCCCcEEECCCCCCCCCCCcH
Confidence 344555555544 33 2 3 5666777777777777777665 54
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=96.33 E-value=0.0063 Score=45.20 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.++.|+|+++++ .+- .+..|.++++|++|+|++|.+++..|
T Consensus 33 ~l~~L~L~~n~l--~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~ 73 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTL---NQDEFASFPHLEELELNENIVSAVEP 73 (477)
T ss_dssp TCSEEECCSSCC--CEE---CTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred CCcEEECCCCcc--ceE---CHhHccCCCCCCEEECCCCccCEeCh
Confidence 466777777765 321 13345555555555555555555444
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.32 E-value=0.0024 Score=48.17 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..|+|+++.+ .+.. + +..+++|++|||++|.|++-
T Consensus 59 ~L~~L~Ls~N~l--~~~~---~--l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 59 KLELLNLSSNVL--YETL---D--LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp TCCEEECTTSCC--EEEE---E--CTTCTTCCEEECCSSEEEEE
T ss_pred CCCEEEeeCCCC--CCCc---c--cccCCCCCEEEecCCcCCCC
Confidence 456666666655 3322 2 56666666666666666653
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.24 E-value=0.0046 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=17.4
Q ss_pred CCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 97 LFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.+..+++|++|||++|.+++.+|..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hccCcccCCEeECCCCCCcccCHHH
Confidence 4566777777777777777766643
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.24 E-value=0.0054 Score=40.61 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=11.1
Q ss_pred CcCCCCCcEEeCCCCeeeeecC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP 119 (123)
+..+++|++|+|++|.+.|..|
T Consensus 144 ~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTCTTCCEEECCSCCBCCCTT
T ss_pred hccCCCccEEEecCCCeecCCC
Confidence 4445555555555554444433
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.18 E-value=0.0033 Score=50.38 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 94 NASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 94 ~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.|..|.++++|++|+|++|++++.+|..
T Consensus 65 ~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 65 DKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 3556788888888888888888877764
No 55
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.18 E-value=0.0057 Score=41.77 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.+..|+++++.+ .+ +.+..+..+++|++|+|++|++++-.|
T Consensus 84 ~L~~L~L~~n~l--~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 84 ELGTLGLANNQL--AS---LPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp TCCEEECTTSCC--CC---CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCEEECCCCcc--cc---cChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 455555555544 22 124456777888888888888775443
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.18 E-value=0.0014 Score=53.24 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCe-eee-ecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNN-IAG-CVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~-l~G-~IP~ 120 (123)
.++..|+|+++++ .|.+ |..++++++|++|+|++|+ |+| .||.
T Consensus 491 ~~L~~L~Ls~N~l--~~~i---P~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 491 KDLTDVELYNCPN--MTQL---PDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp TTCCEEEEESCTT--CCSC---CGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCCEEECcCCCC--CccC---hHHHhCCCCCCEEECcCCCCcccccchH
Confidence 4578899999888 7877 7889999999999999998 998 7775
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.11 E-value=0.0022 Score=50.90 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l 114 (123)
.+..|+|++|.+ . .+ |..|+.|++|++|+|++|.|
T Consensus 271 ~L~~L~Ls~N~l--~-~l---p~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 271 NLRVLDLSHNRL--T-SL---PAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp TCCEEECTTSCC--S-SC---CSSGGGGTTCSEEECCSSCC
T ss_pred CCCEEeCcCCcC--C-cc---ChhhcCCCCCCEEECCCCCC
Confidence 467777777766 2 22 34444444444444444444
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.11 E-value=0.002 Score=45.53 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
..++.++++++.+ .+. .+..++.+++|++|||++|++.|.
T Consensus 149 ~~L~~L~L~~N~l--~~~---~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 149 PGLKVLSIAQAHS--LNF---SCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp TTCCEEEEESCSC--CCC---CTTTCCCCSSCCEEECCSCTTCHH
T ss_pred CCCcEEEeeCCCC--ccc---hHHHhccCCCCCEEECCCCCcCcc
Confidence 3456666666655 332 245677777778888877777665
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.10 E-value=0.005 Score=46.86 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+++.|+++++.+ .+- .|..+.++++|++|||++|+++ +||.
T Consensus 77 ~L~~L~Ls~N~l--~~~---~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 117 (562)
T 3a79_B 77 ELRVLRLSHNRI--RSL---DFHVFLFNQDLEYLDVSHNRLQ-NISC 117 (562)
T ss_dssp TCCEEECCSCCC--CEE---CTTTTTTCTTCCEEECTTSCCC-EECS
T ss_pred CccEEECCCCCC--CcC---CHHHhCCCCCCCEEECCCCcCC-ccCc
Confidence 455566665554 321 2445666666666666666665 4553
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.0034 Score=47.16 Aligned_cols=19 Identities=47% Similarity=0.572 Sum_probs=8.7
Q ss_pred CCcCCCCCcEEeCCCCeee
Q 033271 97 LFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~ 115 (123)
.++++++|++|||++|+++
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp GGTTCTTCCEEECCSSCCC
T ss_pred HhhcccCCCEEecCCCcee
Confidence 3444444444444444444
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.07 E-value=0.0038 Score=44.03 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=8.6
Q ss_pred CCCcEEeCCCCeeeeecCC
Q 033271 102 QQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 102 ~~L~~LdLs~N~l~G~IP~ 120 (123)
++|++|+|++|+|+ .||.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp TTCCCEECCSSCCC-SCCS
T ss_pred CcCCEEECCCCCCC-chhh
Confidence 35555555555554 4443
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.01 E-value=0.01 Score=42.80 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=14.9
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..|..+++|++|||++|+|++-.|
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECT
T ss_pred hhccCCCCCCEEECCCCcCCcCCH
Confidence 346666667777777776665443
No 63
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.00 E-value=0.0067 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=14.5
Q ss_pred CCcCCCCCcEEeCCCCeeeeecC
Q 033271 97 LFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.+..+++|++|+|++|.++|.+|
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhccCCcccEEEccCCCcccCCC
Confidence 34556666666666666666665
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.00 E-value=0.0026 Score=40.72 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..+..|+++++.+ .+. ..+..+++|++|+|++|.+++.+|.
T Consensus 49 ~~L~~L~l~~n~l--~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 49 VNLEFLSLINVGL--ISV-----SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp GGCCEEEEESSCC--CCC-----SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred CCCCEEeCcCCCC--CCh-----hhhccCCCCCEEECcCCcCchHHHH
Confidence 4578889988876 331 4588899999999999999987764
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.00 E-value=0.0049 Score=48.87 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.+..|+|++|.+ . .+ |..|++|++|++|||++|.|+ .||..
T Consensus 248 ~L~~L~Ls~N~l--~-~l---p~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 248 FLTRLYLNGNSL--T-EL---PAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp SCSCCBCTTSCC--S-CC---CGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred CCCEEEeeCCcC--c-cc---ChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 456666666665 3 33 566777777777777777777 66653
No 66
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.00 E-value=0.0078 Score=42.60 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
..++.|+++++.+ .+.. |..+..+++|++|+|++|+++ .+|..
T Consensus 76 ~~L~~L~L~~n~l--~~~~---~~~~~~l~~L~~L~Ls~n~l~-~l~~~ 118 (330)
T 1xku_A 76 KNLHTLILINNKI--SKIS---PGAFAPLVKLERLYLSKNQLK-ELPEK 118 (330)
T ss_dssp TTCCEEECCSSCC--CCBC---TTTTTTCTTCCEEECCSSCCS-BCCSS
T ss_pred CCCCEEECCCCcC--CeeC---HHHhcCCCCCCEEECCCCcCC-ccChh
Confidence 4688999999877 4432 677889999999999999887 56653
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.99 E-value=0.002 Score=48.25 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCCcEEeCCCCeeee--ecCC
Q 033271 102 QQLESLDLSLNNIAG--CVEN 120 (123)
Q Consensus 102 ~~L~~LdLs~N~l~G--~IP~ 120 (123)
++|++||+++|.++| .||.
T Consensus 396 ~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 396 QNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ---------------------
T ss_pred CcCCEEECCCCcCCccccchh
Confidence 566666666666665 5664
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=95.97 E-value=0.0079 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=13.9
Q ss_pred CCcCCCCCcEEeCCCCeeeeecC
Q 033271 97 LFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.+..+++|++|+|++|++++..|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCT
T ss_pred HhcCCccCCEEECCCCcCCccCH
Confidence 34556666666666666665444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.94 E-value=0.0027 Score=44.86 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=8.9
Q ss_pred CCCcEEeCCCCeeeeecC
Q 033271 102 QQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 102 ~~L~~LdLs~N~l~G~IP 119 (123)
++|++|+|++|++++..|
T Consensus 149 ~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TTCCEEEEESCSCCCCCT
T ss_pred CCCcEEEeeCCCCccchH
Confidence 455555555555544433
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.88 E-value=0.0028 Score=44.89 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.++..|+++++.+ .+.. + +..+++|++|||++|++++-
T Consensus 58 ~~L~~L~Ls~n~l--~~~~----~-~~~l~~L~~L~Ls~n~l~~l 95 (317)
T 3o53_A 58 TKLELLNLSSNVL--YETL----D-LESLSTLRTLDLNNNYVQEL 95 (317)
T ss_dssp TTCCEEECTTSCC--EEEE----E-ETTCTTCCEEECCSSEEEEE
T ss_pred CcCCEEECCCCcC--Ccch----h-hhhcCCCCEEECcCCccccc
Confidence 4678888888877 4432 2 78888999999999988864
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=95.86 E-value=0.0085 Score=45.58 Aligned_cols=44 Identities=23% Similarity=0.114 Sum_probs=36.8
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
..++.|+++++.+ .+- .+..+.++++|++|||++|++++..|..
T Consensus 52 ~~L~~L~Ls~N~i--~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 52 PRTKALSLSQNSI--SEL---RMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp TTCCEEECCSSCC--CCC---CGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred CCcCEEECCCCCc--ccc---ChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 4689999999987 443 2567999999999999999999987764
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=95.86 E-value=0.0068 Score=43.00 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.+++.|+++++.+ .+.. |..++.+++|++|+|++|+++ .||..
T Consensus 78 ~~L~~L~L~~n~l--~~~~---~~~~~~l~~L~~L~L~~n~l~-~l~~~ 120 (332)
T 2ft3_A 78 QHLYALVLVNNKI--SKIH---EKAFSPLRKLQKLYISKNHLV-EIPPN 120 (332)
T ss_dssp TTCCEEECCSSCC--CEEC---GGGSTTCTTCCEEECCSSCCC-SCCSS
T ss_pred CCCcEEECCCCcc--CccC---HhHhhCcCCCCEEECCCCcCC-ccCcc
Confidence 4688899988877 4332 667888889999999988887 56653
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=95.84 E-value=0.0085 Score=45.76 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=14.4
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
|..|.++++|++|||++|++++..|.
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~ 99 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAET 99 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTT
T ss_pred hhhccCccccCeeeCCCCcccccChh
Confidence 34455555666666666655555543
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.84 E-value=0.0051 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=12.1
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..++.+++|+.|+|++|.|+|.+|
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSS
T ss_pred HHHhcCCCCCEEEecCCcCCCCcc
Confidence 344555555555555555555443
No 75
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=95.82 E-value=0.0079 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=12.2
Q ss_pred CcCCcCCCCCcEEeCCCCeeeee
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
|..++++++|++|+|++|.+++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCS
T ss_pred hhhcCCcccCCEEEccCCccccc
Confidence 44455555555555555555543
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=95.81 E-value=0.0063 Score=48.75 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
++..|+|+++.+ .+.. |..++++++|++|||++|++++.+|.
T Consensus 74 ~L~~L~Ls~N~l--~~~~---p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 74 NLRILDLGSSKI--YFLH---PDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp TCCEEECTTCCC--CEEC---TTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred CCCEEECCCCcC--cccC---HhHccCCcccCEeeCcCCCCCccccc
Confidence 455566665554 3221 44555555666666666655555443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=95.79 E-value=0.016 Score=39.95 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
++..++++++.+ .+- ++..+..+++|++|+|++|.+++..|.
T Consensus 201 ~L~~L~L~~n~l--~~~---~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 201 RLKELALDTNQL--KSV---PDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CEEEEECCSSCC--SCC---CTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccEEECCCCce--eec---CHhHhcccccccEEEccCCcccccCCc
Confidence 577888888776 432 244578899999999999999998763
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=95.75 E-value=0.0089 Score=45.63 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.++.|+++++.+ .+- .|..|.++++|++|||++|++++..|.
T Consensus 34 ~l~~L~Ls~n~i--~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 75 (606)
T 3t6q_A 34 STECLEFSFNVL--PTI---QNTTFSRLINLTFLDLTRCQIYWIHED 75 (606)
T ss_dssp TCCEEECTTCCC--SEE---CTTTSTTCTTCSEEECTTCCCCEECTT
T ss_pred cCcEEEccCCcc--CcC---ChhHhccCccceEEECCCCccceeChh
Confidence 456666666655 322 244566666666666666666665554
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=95.70 E-value=0.011 Score=44.65 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=15.0
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..+..+++|+.|++++|.++|.+|.
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHhhcccCCcEEEecCCcccCCCcc
Confidence 3455566666666666666666553
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=95.69 E-value=0.012 Score=40.67 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.6
Q ss_pred CcCCCCCcEEeCCCCeeeeecC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP 119 (123)
+..+++|++|+|++|.+++.+|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT
T ss_pred hcCccccCEEECCCCcccccCH
Confidence 4445555555555555555444
No 81
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=95.68 E-value=0.003 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=15.0
Q ss_pred cCCcCCCCCcEEeCCCCeeeeec
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~I 118 (123)
..+..+++|++|++++|.+++..
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTST
T ss_pred HHHhcCCCCCEEEeeCCcCcchH
Confidence 44666777777777777766543
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.65 E-value=0.012 Score=42.37 Aligned_cols=25 Identities=40% Similarity=0.352 Sum_probs=15.3
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..|..+++|++|+|++|++++..|.
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTT
T ss_pred HHhCCCcCCCEEECCCCcccEECHH
Confidence 3456666666666666666655443
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=95.64 E-value=0.012 Score=40.49 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=8.3
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|+|++|.+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp TTTCTTCCEEECTTCCCCE
T ss_pred ccCCcCCCEEECCCCccCc
Confidence 3444444444444444443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.62 E-value=0.0075 Score=42.48 Aligned_cols=38 Identities=32% Similarity=0.259 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
+++.|+++++.+ .+.. +..+..+++|++|||++|++.|
T Consensus 146 ~L~~L~Ls~n~l--~~~~---~~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 146 GLKVLSIAQAHS--PAFS---CEQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCCEEEEECCSS--CCCC---TTSCCCCTTCCEEECCSCTTCH
T ss_pred CCCEEEeeCCCc--chhh---HHHhccCCCCCEEECCCCCCcc
Confidence 577788887766 4432 5667788888888888888765
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.60 E-value=0.014 Score=41.85 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.0
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
+..|..+++|++|||++|+|+ .||..
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~-~lp~~ 220 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIH-SLPSY 220 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCC-CCCSS
T ss_pred HHHhccCcccchhhcCCCCcC-ccChh
Confidence 345788999999999999998 46654
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=95.58 E-value=0.011 Score=45.71 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeec
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~I 118 (123)
+++.|+++++++ .+-. +..+.++++|++|||++|.+++.+
T Consensus 26 ~l~~L~Ls~n~l--~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~ 65 (680)
T 1ziw_A 26 NITVLNLTHNQL--RRLP---AANFTRYSQLTSLDVGFNTISKLE 65 (680)
T ss_dssp TCSEEECCSSCC--CCCC---GGGGGGGTTCSEEECCSSCCCCCC
T ss_pred CCcEEECCCCCC--CCcC---HHHHhCCCcCcEEECCCCccCccC
Confidence 466667666655 2211 223444444444444444444433
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=95.52 E-value=0.0042 Score=46.63 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~~ 121 (123)
.+++.|+++++.+ .+.. +..+..+++|++|||++|++++..|..
T Consensus 21 ~~L~~L~Ls~n~i--~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 64 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELW---TSDILSLSKLRILIISHNRIQYLDISV 64 (520)
T ss_dssp TTCSEEECCSSCC--CCCC---HHHHTTCTTCCEEECCSSCCCEEEGGG
T ss_pred ccccEEECCCCcc--cccC---hhhccccccccEEecCCCccCCcChHH
Confidence 4689999999987 5432 567899999999999999999987753
No 88
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=95.51 E-value=0.014 Score=40.37 Aligned_cols=19 Identities=53% Similarity=0.572 Sum_probs=10.8
Q ss_pred CcCCcCCCCCcEEeCCCCe
Q 033271 95 ASLFTPFQQLESLDLSLNN 113 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~ 113 (123)
+..+..+++|++|+|++|.
T Consensus 73 ~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTTTTTCTTCCEEECCSCT
T ss_pred HhhcCCccCCCEEeCCCCC
Confidence 3445555666666666665
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=95.45 E-value=0.014 Score=37.71 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNI 114 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l 114 (123)
++..+++++|.+ .+ + ++..+..+++|++|+|++|.+
T Consensus 65 ~L~~L~Ls~N~l--~~-~--~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 65 RLKTLLVNNNRI--CR-I--GEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp SCCEEECCSSCC--CE-E--CSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCcc--cc-c--CcchhhcCCCCCEEECCCCcC
Confidence 345555555544 21 1 122235666666666666666
No 90
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=95.44 E-value=0.0077 Score=45.39 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..++.+++++|.+ . .+ |. ...+++|++|||++|+++|.+|.
T Consensus 451 ~~L~~L~Ls~N~l--~-~i---p~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 451 PRLQELYISRNKL--K-TL---PD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp TTCCEEECCSSCC--S-SC---CC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred ChhcEEECCCCcc--C-cC---CC-cccCccCCEEecCCCccCCcCHH
Confidence 4577788888766 3 23 32 34566666666666666665543
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.013 Score=44.18 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=14.9
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
|..+..+++|++|+|++|++++.+|
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCH
Confidence 4455566666666666666665544
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.32 E-value=0.021 Score=40.06 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=7.7
Q ss_pred cCCCCCcEEeCCCCeee
Q 033271 99 TPFQQLESLDLSLNNIA 115 (123)
Q Consensus 99 ~~l~~L~~LdLs~N~l~ 115 (123)
..+++|++|+|++|+|+
T Consensus 169 ~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLY 185 (290)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred cCcCCCCEEECCCCcCC
Confidence 33444444444444444
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=95.31 E-value=0.022 Score=38.43 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCe
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNN 113 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~ 113 (123)
.++.|+++++++ .+ +.+..+..+++|++||+++|.
T Consensus 32 ~l~~L~l~~n~l--~~---i~~~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIETHL--RT---IPSHAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESCCC--SE---ECTTTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCCcc--eE---ECHHHccCCCCCcEEeCCCCC
Confidence 567777777765 22 113345666666666666665
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=95.31 E-value=0.02 Score=40.08 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=8.6
Q ss_pred CcCCCCCcEEeCCCCeee
Q 033271 98 FTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~ 115 (123)
+..+++|+.|+|++|+|+
T Consensus 144 ~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp TTTCTTCCEEECTTSCCS
T ss_pred cccccCCCEEECCCCcCC
Confidence 344444445555544444
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=95.28 E-value=0.0056 Score=39.60 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCcccccccccCCc--CCcCCCCCcEEeCCCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNAS--LFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~--~l~~l~~L~~LdLs~N~l~ 115 (123)
.+..+++++|.+ +.+ |. .+..+++|+.|++++|.++
T Consensus 89 ~L~~L~L~~N~i---~~~---~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 89 DLTELILTNNSL---VEL---GDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp TCCEEECCSCCC---CCG---GGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCCEEECCCCcC---Ccc---hhhHhhhcCCCCCEEEecCCCCC
Confidence 455566666544 112 22 4555666666666666654
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=95.27 E-value=0.021 Score=41.33 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=13.5
Q ss_pred CcCCCCCcEEeCCCCeeeeecC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP 119 (123)
+.++++|++|+|++|.+++..|
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT
T ss_pred hcCCCCCcEEECCCCccCccCh
Confidence 4566666666666666665444
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=95.25 E-value=0.017 Score=44.80 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.3
Q ss_pred CcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 95 ASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+..+..+++|++|||++|.++|.+|.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCc
Confidence 56677888888888888888888874
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.25 E-value=0.017 Score=40.76 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeec
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~I 118 (123)
+..++++++.+ .+.. +..+..+++|++|||++|.+++..
T Consensus 122 L~~L~l~~N~l--~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 122 KKNIYLANNKI--TMLR---DLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CEEEECCSSCC--CSGG---GBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCEEECCCCCC--CCcc---chhhhccCCCCEEECCCCCCCccc
Confidence 45555555544 2211 233445555555555555555543
No 99
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=95.19 E-value=0.0073 Score=47.21 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
+..|++++|.+ . .+ |..+.++++|+.|+|++|.|+|.+|.
T Consensus 263 L~~L~Ls~N~L--~-~l---p~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 263 LLSLSVYRNQL--T-RL---PESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCEEECCSSCC--C-SC---CGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcEEeCCCCCC--C-cC---CHHHhhccccCEEEecCCCCCCcCHH
Confidence 44455555544 2 23 56678888888888888888887653
No 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=95.17 E-value=0.018 Score=42.66 Aligned_cols=12 Identities=17% Similarity=0.218 Sum_probs=6.2
Q ss_pred cEEEEEcCCCCc
Q 033271 74 RVIELDLALTRN 85 (123)
Q Consensus 74 ~v~~l~L~~~~l 85 (123)
.+..|+++++++
T Consensus 197 ~L~~L~L~~n~l 208 (452)
T 3zyi_A 197 NLKYLNLGMCNI 208 (452)
T ss_dssp TCCEEECTTSCC
T ss_pred CCCEEECCCCcc
Confidence 345555555544
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.14 E-value=0.0081 Score=46.52 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.9
Q ss_pred EEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 76 IELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 76 ~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..|+|++|.+ . .+ |..+..+++|++|||++|.|+|.+|.
T Consensus 210 ~~L~Ls~N~l--~-~l---p~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 210 IFFRCRENRI--T-HI---PENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp EEEECCSSCC--C-CC---CGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred eEEecCCCcc--e-ec---CHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 7777777765 3 23 66778899999999999999998774
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=95.11 E-value=0.0081 Score=39.53 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=17.2
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCe
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNN 113 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~ 113 (123)
.+..++++++.+ .+.. +..++.+++|++|+|++|.
T Consensus 113 ~L~~L~Ls~n~i--~~~~---~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 113 SLTLLDISHSAH--DDSI---LTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TCCEEECCSSBC--BGGG---HHHHTTCSSCCEEECCSCT
T ss_pred CCCEEEecCCcc--CcHh---HHHHhhCCCCCEEEccCCC
Confidence 466677777665 3322 2334444444444444444
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=95.08 E-value=0.022 Score=42.57 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.++.++++++.+ .+ + | .++++++|++|++++|++++ ||.
T Consensus 132 ~L~~L~L~~n~l--~~-l---p-~~~~l~~L~~L~l~~N~l~~-lp~ 170 (454)
T 1jl5_A 132 LLEYLGVSNNQL--EK-L---P-ELQNSSFLKIIDVDNNSLKK-LPD 170 (454)
T ss_dssp TCCEEECCSSCC--SS-C---C-CCTTCTTCCEEECCSSCCSC-CCC
T ss_pred CCCEEECcCCCC--CC-C---c-ccCCCCCCCEEECCCCcCcc-cCC
Confidence 455666666655 33 3 4 48888999999999999887 664
No 104
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.03 E-value=0.025 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=11.2
Q ss_pred CcCCCCCcEEeCCCCeeeeecC
Q 033271 98 FTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~IP 119 (123)
++++++|++|+|++|.+++.+|
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT
T ss_pred hccCCCCCEEEeeCCcCCCCCh
Confidence 3445555555555555554444
No 105
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=95.00 E-value=0.025 Score=41.68 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=6.1
Q ss_pred cEEEEEcCCCCc
Q 033271 74 RVIELDLALTRN 85 (123)
Q Consensus 74 ~v~~l~L~~~~l 85 (123)
.+..|+++++++
T Consensus 186 ~L~~L~L~~n~l 197 (440)
T 3zyj_A 186 NLRYLNLAMCNL 197 (440)
T ss_dssp SCCEEECTTSCC
T ss_pred ccCeecCCCCcC
Confidence 345555555543
No 106
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.98 E-value=0.02 Score=43.99 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=12.8
Q ss_pred CCcCCCCCcEEeCCCCeeeeecC
Q 033271 97 LFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
.++.+++|++|+|++|.+++..|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCH
Confidence 45555555555555555555444
No 107
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=94.91 E-value=0.031 Score=38.48 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=8.8
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|+|++|.+++
T Consensus 153 ~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp TTTCTTCCEEECCSSCCSC
T ss_pred ccCCcccceeEecCCcCcE
Confidence 3444444444444444443
No 108
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=94.90 E-value=0.035 Score=41.17 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=14.0
Q ss_pred CCcCCCCCcEEeCCCCeeeeecCC
Q 033271 97 LFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 97 ~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.+.++++|++|||++|.+++.+|.
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~ 122 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDY 122 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTT
T ss_pred cccCCCCCCEEECCCCccccCChh
Confidence 355566666666666666655443
No 109
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=94.87 E-value=0.037 Score=37.26 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCC-cccccccccCCcCCcCC-CCCcEEeCCCCeeeeecCCC
Q 033271 73 GRVIELDLALTR-NWESAEWYMNASLFTPF-QQLESLDLSLNNIAGCVENE 121 (123)
Q Consensus 73 ~~v~~l~L~~~~-l~~~G~~~~~p~~l~~l-~~L~~LdLs~N~l~G~IP~~ 121 (123)
.++..|+++++. + .+ +.+..+..+ ++|+.|||++|+++ .+|..
T Consensus 179 ~~L~~L~L~~n~~l--~~---i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~ 223 (239)
T 2xwt_C 179 TKLDAVYLNKNKYL--TV---IDKDAFGGVYSGPSLLDVSQTSVT-ALPSK 223 (239)
T ss_dssp CEEEEEECTTCTTC--CE---ECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred CCCCEEEcCCCCCc--cc---CCHHHhhccccCCcEEECCCCccc-cCChh
Confidence 357777777773 5 21 234567888 99999999999998 46653
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=94.81 E-value=0.0084 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=16.2
Q ss_pred cCCcCCCCCcEEeCCCCeeeeecC
Q 033271 96 SLFTPFQQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~IP 119 (123)
..+..+++|++|+|++|.+++..|
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG
T ss_pred hHhhccccCCEEEccCCccccccC
Confidence 445667777777777777776554
No 111
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=94.80 E-value=0.026 Score=40.81 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=8.5
Q ss_pred CcCCCCCcEEeCCCCeee
Q 033271 98 FTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~ 115 (123)
+..+++|++|+|++|.++
T Consensus 113 ~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp TTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCccC
Confidence 444444444444444444
No 112
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=94.78 E-value=0.028 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=12.8
Q ss_pred cCCcCCCCCcEEeCCCCeeee
Q 033271 96 SLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G 116 (123)
..+..+++|++|||++|+|++
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCc
Confidence 345556666666666666664
No 113
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.77 E-value=0.023 Score=40.58 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=9.3
Q ss_pred CcCCCCCcEEeCCCCeee
Q 033271 98 FTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~ 115 (123)
+..+++|++|+|++|.++
T Consensus 120 ~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp HTTCTTCSEEECTTCCCS
T ss_pred hCCCccCCEEECCCCCCc
Confidence 444555555555555554
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=94.67 E-value=0.0022 Score=42.36 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
..+..|+++++.+ .+ + | .+..+++|++|+|++|.++ .||.
T Consensus 48 ~~L~~L~ls~n~l--~~-l---~-~~~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 48 KACKHLALSTNNI--EK-I---S-SLSGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp TTCSEEECSEEEE--SC-C---C-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred CCCCEEECCCCCC--cc-c---c-ccccCCCCCEEECCCCCcc-cccc
Confidence 4688899998876 44 4 5 7888999999999999998 6764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=94.65 E-value=0.031 Score=38.59 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
..++.|+++++.+ .+- ++ +..+++|++|+|++|++++
T Consensus 63 ~~L~~L~L~~N~i--~~~----~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 63 TNLKELHLSHNQI--SDL----SP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp TTCCEEECCSSCC--CCC----GG-GTTCSSCCEEECCSSCCSC
T ss_pred CCCCEEECCCCcc--CCC----hh-hccCCCCCEEECCCCccCC
Confidence 3577788888766 332 23 7777788888888887776
No 116
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.37 E-value=0.036 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
.++.|+|++|++ . .+++..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l--~---~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNL--T---ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCC--S---SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcC--C---ccChhhhhhccccCEEEecCCCee
Confidence 478899999987 2 233556788999999999999764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=94.19 E-value=0.042 Score=37.88 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=10.9
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|||++|++++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp GTTCTTCCEEECTTSCCCB
T ss_pred hcCcccccEEECCCCcCCC
Confidence 4555556666666655554
No 118
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.88 E-value=0.034 Score=39.06 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCC--CCcEEeCCCCeeeeecCC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQ--QLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~--~L~~LdLs~N~l~G~IP~ 120 (123)
.++..|+|++|.+ .+- ..+..++ +|+.|+|++|.+.+.+|.
T Consensus 196 ~~L~~L~Ls~N~i--~~~-----~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 196 PNLKILNLSGNEL--KSE-----RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TTCCEEECTTSCC--CSG-----GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred CCCCEEECCCCcc--CCc-----hhhhhcccCCcceEEccCCcCccccCc
Confidence 4688999999988 431 2233333 999999999999998874
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=93.63 E-value=0.0065 Score=40.03 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
++..++++++.+ . .+ |..+..+++|++|+|++|++++
T Consensus 71 ~L~~L~l~~n~l--~-~l---~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 71 NLRILSLGRNLI--K-KI---ENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp TCCEEEEEEEEE--C-SC---SSHHHHHHHCSEEEEEEEECCC
T ss_pred CCCEEECCCCCc--c-cc---cchhhcCCcCCEEECcCCcCCc
Confidence 466777777765 2 33 5556667888888888888876
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=93.61 E-value=0.053 Score=40.23 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=9.3
Q ss_pred CcCCCCCcEEeCCCCeeeeec
Q 033271 98 FTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~I 118 (123)
+..+++|++|++++|+++|.+
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCG
T ss_pred hccCCCCCEEeCCCCccCccc
Confidence 334444444444444444433
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=93.31 E-value=0.0067 Score=47.41 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=13.5
Q ss_pred CCCCCcEEeCCCCeeeeecCC
Q 033271 100 PFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 100 ~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.+++|++|||++|+|++ ||.
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~ 98 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV 98 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC
T ss_pred cCCCCCEEEcCCCcCCc-CCC
Confidence 45777777777777763 553
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=93.12 E-value=0.066 Score=37.40 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=8.9
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|+|++|.+++
T Consensus 152 l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp GGGCTTCSEEECCSSCCCC
T ss_pred hccCCCCCEEEccCCcccc
Confidence 3344444444444444444
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=92.96 E-value=0.012 Score=41.56 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=4.3
Q ss_pred EEEEEcCCCC
Q 033271 75 VIELDLALTR 84 (123)
Q Consensus 75 v~~l~L~~~~ 84 (123)
++.++++++.
T Consensus 95 L~~L~L~~~~ 104 (336)
T 2ast_B 95 VQHMDLSNSV 104 (336)
T ss_dssp CCEEECTTCE
T ss_pred CCEEEccCCC
Confidence 4444444443
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=92.87 E-value=0.098 Score=39.03 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
.+..++++++.+ .+ + | ++.+++|++|++++|+|+|.
T Consensus 213 ~L~~L~Ls~N~l--~~-i---p--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 213 QLTFLDCSSNKL--TE-I---D--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp TCSEEECCSSCC--SC-C---C--CTTCTTCSEEECCSSCCSCC
T ss_pred CCCEEECcCCcc--cc-c---C--ccccCCCCEEEeeCCcCCCc
Confidence 344555555544 33 2 2 55666666666666666663
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=92.70 E-value=0.074 Score=41.37 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=10.9
Q ss_pred CcCCCCCcEEeCCCCeeeeec
Q 033271 98 FTPFQQLESLDLSLNNIAGCV 118 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G~I 118 (123)
+..+++|+.|+|++|.|++.+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCG
T ss_pred hcccCCCCEEECcCCcCCCch
Confidence 444555555555555555443
No 126
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=92.61 E-value=0.091 Score=39.23 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+++.++++++.+ .+ + + ++.+++|++|||++|.+++
T Consensus 64 ~~L~~L~Ls~n~l--~~-~---~--~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 64 TGLTKLICTSNNI--TT-L---D--LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp TTCSEEECCSSCC--SC-C---C--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCEEEccCCcC--Ce-E---c--cccCCCCCEEECcCCCCce
Confidence 3577778877766 43 2 2 7788888888888888877
No 127
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=92.47 E-value=0.11 Score=36.29 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=12.0
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|++|+|++|++++
T Consensus 108 l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC
T ss_pred hccCCCCCEEECCCCcCCC
Confidence 5566666666666666654
No 128
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=92.16 E-value=0.13 Score=36.10 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=6.0
Q ss_pred cEEEEEcCCCCc
Q 033271 74 RVIELDLALTRN 85 (123)
Q Consensus 74 ~v~~l~L~~~~l 85 (123)
++..|+++++.+
T Consensus 86 ~L~~L~L~~n~l 97 (308)
T 1h6u_A 86 KITELELSGNPL 97 (308)
T ss_dssp SCCEEECCSCCC
T ss_pred CCCEEEccCCcC
Confidence 345555555543
No 129
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=92.09 E-value=0.12 Score=36.26 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+++.|+++++.+ .+- ++ +..+++|++|+|++|.+++
T Consensus 63 ~~L~~L~L~~n~i--~~~----~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 63 NNLIGLELKDNQI--TDL----AP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCCEEECCSSCC--CCC----GG-GTTCCSCCEEECCSCCCSC
T ss_pred CCCCEEEccCCcC--CCC----hh-HccCCCCCEEEccCCcCCC
Confidence 4688899998876 321 22 5555555555555555544
No 130
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=91.86 E-value=0.13 Score=38.18 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
.+..++++++.+ .+.. | +..+++|+.|++++|.+++
T Consensus 354 ~L~~L~l~~n~l--~~~~---~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQI--SDLT---P--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCC--CBCG---G--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCcc--Cccc---h--hhcCCCCCEEeccCCcccC
Confidence 456666766665 4432 3 8899999999999999998
No 131
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=91.77 E-value=0.12 Score=40.13 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=9.4
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+..+++|+.|+|++|.|++
T Consensus 171 l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB
T ss_pred hccCCCCCEEECcCCCCCC
Confidence 4445555555555554443
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=91.61 E-value=0.027 Score=40.71 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=7.2
Q ss_pred cEEEEEcCCCCc
Q 033271 74 RVIELDLALTRN 85 (123)
Q Consensus 74 ~v~~l~L~~~~l 85 (123)
+++.|+|+++.+
T Consensus 245 ~L~~L~L~~n~i 256 (386)
T 2ca6_A 245 NLRELGLNDCLL 256 (386)
T ss_dssp TCCEEECTTCCC
T ss_pred CcCEEECCCCCC
Confidence 456666666655
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=91.41 E-value=0.049 Score=39.33 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCcccc--cccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWES--AEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~--G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
++..|+|+++.+... +.+ +..+..+++|++|+|++|.+++
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l---~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSAL---AIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHH---HHHGGGCTTCCEEECTTCCCCH
T ss_pred CccEEECcCCCCCcHHHHHH---HHHHccCCCcCEEECCCCCCch
Confidence 455566655544100 111 2334444555555555555443
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=90.85 E-value=0.061 Score=38.62 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCC-----CCCcEEeCCCCeeeeecC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPF-----QQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l-----~~L~~LdLs~N~l~G~IP 119 (123)
+++.|+|+++.+ .+.. +..++.+ ++|++|||++|.+++..|
T Consensus 52 ~L~~L~Ls~N~l--~~~~---~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 52 SVTSLNLSGNSL--GFKN---SDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TCCEEECCSSCG--GGSC---HHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCCC--CHHH---HHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 688888888876 3321 2334443 889999999999887654
No 135
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=90.66 E-value=0.15 Score=35.94 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeee
Q 033271 75 VIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 75 v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~ 115 (123)
+..++++++.+ .+. ++ +..+++|++||+++|.|+
T Consensus 313 L~~L~L~~n~l--~~~----~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHI--TDI----RP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSC--CCC----GG-GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCcc--ccc----cC-hhhhhccceeehhhhccc
Confidence 44555555544 332 23 788999999999999875
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=90.60 E-value=0.11 Score=36.55 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
..+..++++++.+ .+. ++.+..+++|++|||++|.+++.
T Consensus 70 ~~l~~L~l~~n~l--~~~----~~~~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 70 QGVIAFRCPRSFM--DQP----LAEHFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp TTCSEEECTTCEE--CSC----CCSCCCCBCCCEEECTTCEECHH
T ss_pred ccceEEEcCCccc--ccc----chhhccCCCCCEEEccCCCcCHH
Confidence 3466666666655 332 23355677777777777776654
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=90.56 E-value=0.037 Score=39.74 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCcccccccccCCcC----CcCC-CCCcEEeCCCCeeeeecC
Q 033271 73 GRVIELDLALTRNWESAEWYMNASL----FTPF-QQLESLDLSLNNIAGCVE 119 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~----l~~l-~~L~~LdLs~N~l~G~IP 119 (123)
..++.|+|+++.+ .+.. +.. +..+ ++|++|||++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l--~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 80 ANVTSLNLSGNFL--SYKS---SDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TTCCEEECCSSCG--GGSC---HHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCccEEECcCCcC--ChHH---HHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 5689999999987 4321 222 4445 899999999999977543
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=89.05 E-value=0.075 Score=38.96 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=14.1
Q ss_pred cCCcCCCCCcEEeCCCCeeeee
Q 033271 96 SLFTPFQQLESLDLSLNNIAGC 117 (123)
Q Consensus 96 ~~l~~l~~L~~LdLs~N~l~G~ 117 (123)
..+..+++|++|||++|.+++.
T Consensus 392 ~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHhCCCccEEECCCCCCCHH
Confidence 3455567777777777776653
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=88.74 E-value=0.14 Score=37.54 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCccccc--ccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 74 RVIELDLALTRNWESA--EWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G--~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
+++.|+++++++...| .+ +..+..+++|++|||++|.+++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l---~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVL---SSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHH---HHHTTSCTTCCEEECCSSBCHH
T ss_pred ceeEEEccCCCCCHHHHHHH---HHHHccCCceeEEECCCCcCch
Confidence 5777888877662111 22 4456667777777777777654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=82.50 E-value=0.29 Score=35.61 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=6.2
Q ss_pred CCCCcEEeCCCCee
Q 033271 101 FQQLESLDLSLNNI 114 (123)
Q Consensus 101 l~~L~~LdLs~N~l 114 (123)
.++|+.|||++|.+
T Consensus 210 ~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 210 NRQLQELNVAYNGA 223 (372)
T ss_dssp CSCCCEEECCSSCC
T ss_pred CCCcCeEECCCCCC
Confidence 33444444444444
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=82.31 E-value=0.32 Score=31.66 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeee
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G 116 (123)
..++.|+|+++++...|...+ ...+...+.|++|||++|.++.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l-~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCH
T ss_pred CCcCEEECcCCCCChHHHHHH-HHHHHhCCCcCEEECcCCcCCH
Confidence 468888888887622221100 2234456789999999998764
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=80.01 E-value=0.24 Score=36.03 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=13.5
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+...++|++|||++|.++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HHTCSSCCEEECTTSSCHH
T ss_pred HhcCCCcCEEeCCCCCCCc
Confidence 3556778888888887654
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=78.39 E-value=1.6 Score=28.63 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCe
Q 033271 73 GRVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNN 113 (123)
Q Consensus 73 ~~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~ 113 (123)
-++++|++++..+...| -..+..+++|++|+|+++.
T Consensus 61 ~~L~~LDLs~~~Itd~G-----L~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG-----FDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGG-----GGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHH-----HHHhcCCCCCCEEEeCCCC
Confidence 46899999988663233 1346778888888888873
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=77.74 E-value=1.6 Score=30.60 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCCeeeeecCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLNNIAGCVEN 120 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N~l~G~IP~ 120 (123)
.++.|+|+. ++. .+....|.++++|+.|++++|.++ .|++
T Consensus 102 ~L~~l~L~~-~i~-----~I~~~aF~~~~~L~~l~l~~n~i~-~i~~ 141 (329)
T 3sb4_A 102 TLEKVILSE-KIK-----NIEDAAFKGCDNLKICQIRKKTAP-NLLP 141 (329)
T ss_dssp TCCC-CBCT-TCC-----EECTTTTTTCTTCCEEEBCCSSCC-EECT
T ss_pred CCcEEECCc-ccc-----chhHHHhhcCcccceEEcCCCCcc-ccch
Confidence 467777877 441 223556899999999999999876 4544
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=77.47 E-value=0.51 Score=35.63 Aligned_cols=17 Identities=12% Similarity=-0.076 Sum_probs=8.6
Q ss_pred CCCCCcEEeCCCCeeee
Q 033271 100 PFQQLESLDLSLNNIAG 116 (123)
Q Consensus 100 ~l~~L~~LdLs~N~l~G 116 (123)
.+++|++|+|++|++++
T Consensus 511 ~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HCSSCCEEEEESCBCCT
T ss_pred hcCccCeeECcCCcCCH
Confidence 34555555555555443
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=73.88 E-value=0.63 Score=33.83 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=10.4
Q ss_pred cCCCCCcEEeCCCCeee
Q 033271 99 TPFQQLESLDLSLNNIA 115 (123)
Q Consensus 99 ~~l~~L~~LdLs~N~l~ 115 (123)
..+++|+.|||++|.++
T Consensus 304 ~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHTTCSEEECCSBBCC
T ss_pred ccCCcceEEECCCCcCC
Confidence 34566666666666554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=71.13 E-value=1.1 Score=29.01 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeC--CCCeee
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDL--SLNNIA 115 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdL--s~N~l~ 115 (123)
.++.|+|+++.+...|...+ ...+...+.|++||| ++|.++
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l-~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILAL-VEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHH-HHGGGGCSSCCEEECCCCSSCCC
T ss_pred CcCEEECcCCcCCHHHHHHH-HHHHHhCCCceEEEecCCCCCCC
Confidence 46667777765521121000 123444555666666 555554
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=70.91 E-value=5 Score=28.03 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcccccccccCCcCCcCCCCCcEEeCCCC
Q 033271 74 RVIELDLALTRNWESAEWYMNASLFTPFQQLESLDLSLN 112 (123)
Q Consensus 74 ~v~~l~L~~~~l~~~G~~~~~p~~l~~l~~L~~LdLs~N 112 (123)
.++.++++++++. .+....|.++++|+.|+|++|
T Consensus 227 ~L~~l~L~~n~i~-----~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 227 NLVSLDISKTNAT-----TIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp TCCEEECTTBCCC-----EECTTTTTTCTTCCEEECCTT
T ss_pred CCeEEECCCCCcc-----eecHhhhhCCCCCCEEECCcc
Confidence 5777888876551 222445777777777777776
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=63.05 E-value=1.7 Score=32.80 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=12.3
Q ss_pred CcCCCCCcEEeCCCCeeee
Q 033271 98 FTPFQQLESLDLSLNNIAG 116 (123)
Q Consensus 98 l~~l~~L~~LdLs~N~l~G 116 (123)
+.++++|+.|+|++|.+.|
T Consensus 216 ~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHCTTCCEEECSSCBGGG
T ss_pred HhhCCCCcEEeccCccHHH
Confidence 4456777777777776554
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=59.80 E-value=1.1 Score=33.81 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=8.8
Q ss_pred CCCCCcEEeCCCCeee
Q 033271 100 PFQQLESLDLSLNNIA 115 (123)
Q Consensus 100 ~l~~L~~LdLs~N~l~ 115 (123)
.+++|+.|+|++|.++
T Consensus 479 ~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HCTTCCEEEEESCSCC
T ss_pred cCCCcCEEECcCCCCc
Confidence 3555555555555553
No 151
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=59.38 E-value=1.4 Score=29.43 Aligned_cols=13 Identities=23% Similarity=0.158 Sum_probs=7.6
Q ss_pred CcEEEEEcCCCCc
Q 033271 73 GRVIELDLALTRN 85 (123)
Q Consensus 73 ~~v~~l~L~~~~l 85 (123)
..++.|+|+++.+
T Consensus 70 ~~L~~L~L~~n~i 82 (197)
T 1pgv_A 70 KHIEKFSLANTAI 82 (197)
T ss_dssp SCCCEEECTTSCC
T ss_pred CCcCEEEccCCCC
Confidence 3466666666654
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=55.60 E-value=1.8 Score=32.55 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=10.9
Q ss_pred CCCCCcEEeCCCCeeee
Q 033271 100 PFQQLESLDLSLNNIAG 116 (123)
Q Consensus 100 ~l~~L~~LdLs~N~l~G 116 (123)
++++|++|+|++|.+++
T Consensus 154 ~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDD 170 (594)
T ss_dssp HCTTCCEEECTTCEEEC
T ss_pred hCCCCCEEeCcCCccCC
Confidence 46666666666666554
No 153
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=40.77 E-value=9.7 Score=15.74 Aligned_cols=10 Identities=40% Similarity=1.311 Sum_probs=7.5
Q ss_pred CCCceeceeE
Q 033271 58 SDCCQWEGVE 67 (123)
Q Consensus 58 ~~~C~w~gv~ 67 (123)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 4579998875
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=38.76 E-value=33 Score=24.92 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=16.6
Q ss_pred CcCCcCCCCCcEEeCCCCeee
Q 033271 95 ASLFTPFQQLESLDLSLNNIA 115 (123)
Q Consensus 95 p~~l~~l~~L~~LdLs~N~l~ 115 (123)
...|.++++|+.++|++|+++
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCS
T ss_pred HHHhhCcccCCeeecCCCcce
Confidence 456788899999999887665
Done!