BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033273
         (123 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q64TC3|Y2507_BACFR Uncharacterized transporter BF2507 OS=Bacteroides fragilis (strain
           YCH46) GN=BF2507 PE=3 SV=1
          Length = 562

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 1   MARYNSSYLDYIYAFSLPLPLFFFMLILFFVLGLSWYINYESVFEDFMNQVKFYLMLSPL 60
           + R N S +D + +  L L +   + I+   L +S   + E V  + M ++  +  L P+
Sbjct: 332 VTRVNRSGVDLVASPQLQLQMGDRVTIVGSELAVS---HAEKVLGNSMKRLN-HPNLIPI 387

Query: 61  ILLLIVHCLSGGVPFFSPFPAEPDALHRAGG 91
            L + + C+ G +PF  P   +P  L  AGG
Sbjct: 388 FLGIALGCILGSIPFMFPGIPQPVKLGLAGG 418


>sp|Q7NWP1|CRCB_CHRVO Protein CrcB homolog OS=Chromobacterium violaceum (strain ATCC
          12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131
          / NCTC 9757) GN=crcB PE=3 SV=1
          Length = 126

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 56 MLSPLILLLIVHCLSGGVPFFSPFPAEPDALHRAG 90
          MLSPL  LLI+    GG+  FS F AE   L R G
Sbjct: 60 MLSPLWRLLIITGFCGGLTTFSTFSAEVVDLLRQG 94


>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
           chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
           SV=1
          Length = 455

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 98  ALLVLVLFMVSHQSSLHERWFPLITK 123
           ALL+ +L M+SHQS   +  FP + K
Sbjct: 102 ALLLFILMMISHQSQFDKFTFPFVIK 127


>sp|Q9UI33|SCNBA_HUMAN Sodium channel protein type 11 subunit alpha OS=Homo sapiens
            GN=SCN11A PE=1 SV=2
          Length = 1791

 Score = 29.6 bits (65), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 12/76 (15%)

Query: 12   IYAFSLPLP-------LFFFMLILFFVLGLSWY--INYESVFEDFMNQVKFYLMLSPLIL 62
            ++A  + LP       L F ++ ++ +LG++W+  +N ES  +D  N   F    S ++ 
Sbjct: 1487 LFALMMSLPSLFNIGLLLFLIMFIYAILGMNWFSKVNPESGIDDIFN---FKTFASSMLC 1543

Query: 63   LLIVHCLSGGVPFFSP 78
            L  +   +G     SP
Sbjct: 1544 LFQISTSAGWDSLLSP 1559


>sp|A3LZS3|ATG9_PICST Autophagy-related protein 9 OS=Scheffersomyces stipitis (strain
           ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
           GN=ATG9 PE=3 SV=3
          Length = 916

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 9/59 (15%)

Query: 25  MLILFFVLG----LSWYINYESVFEDFMNQVKFYLMLSPLILLLIVHCLSGGVPFFSPF 79
           +LIL F+LG    L W INY   F+++ +    Y+ L+ LI   I + L   VP  + F
Sbjct: 247 LLILVFILGFTVFLKWGINYRYFFDNYKDST--YITLADLI---IPNFLVDEVPLLAKF 300


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.147    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,513,218
Number of Sequences: 539616
Number of extensions: 1886572
Number of successful extensions: 5791
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5777
Number of HSP's gapped (non-prelim): 33
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)