Query 033273
Match_columns 123
No_of_seqs 95 out of 97
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05251 UPF0197: Uncharacteri 66.2 23 0.00049 24.5 5.3 25 19-43 16-40 (77)
2 COG5336 Uncharacterized protei 43.7 15 0.00033 27.3 1.5 16 87-102 68-83 (116)
3 PF03032 Brevenin: Brevenin/es 40.7 17 0.00037 22.7 1.2 16 18-33 6-21 (46)
4 PTZ00370 STEVOR; Provisional 35.9 26 0.00056 29.8 1.9 15 93-107 256-270 (296)
5 TIGR01478 STEVOR variant surfa 35.1 27 0.00058 29.7 1.9 15 93-107 260-274 (295)
6 PRK12772 bifunctional flagella 35.0 3.6E+02 0.0079 24.8 9.2 46 20-65 215-261 (609)
7 PF09323 DUF1980: Domain of un 29.4 75 0.0016 24.1 3.4 17 50-66 74-90 (182)
8 PF04120 Iron_permease: Low af 29.2 57 0.0012 24.5 2.6 21 89-109 11-31 (132)
9 PF07835 COX4_pro_2: Bacterial 26.1 76 0.0016 19.5 2.4 16 92-107 25-40 (44)
10 PF11457 DUF3021: Protein of u 21.5 1.7E+02 0.0037 20.6 3.9 26 25-50 110-135 (136)
11 PF13956 Ibs_toxin: Toxin Ibs, 20.7 66 0.0014 16.8 1.1 12 100-111 7-18 (19)
12 PF08563 P53_TAD: P53 transact 20.6 36 0.00078 19.0 0.1 9 110-118 12-20 (25)
No 1
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=66.24 E-value=23 Score=24.53 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHH
Q 033273 19 LPLFFFMLILFFVLGLSWYINYESV 43 (123)
Q Consensus 19 ~~ll~~l~iv~~ll~~S~Y~~ye~~ 43 (123)
+|.+.++...+=+....|++-||-.
T Consensus 16 ~p~La~vll~iGl~fta~Ffiyevt 40 (77)
T PF05251_consen 16 YPHLAVVLLAIGLFFTAWFFIYEVT 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5556666666666778899888766
No 2
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.73 E-value=15 Score=27.29 Aligned_cols=16 Identities=50% Similarity=1.016 Sum_probs=11.7
Q ss_pred ccCCCChHHHHHHHHH
Q 033273 87 HRAGGSPWGVAALLVL 102 (123)
Q Consensus 87 hr~GsSPWGVA~lLvl 102 (123)
|-+|+||||.-.++++
T Consensus 68 ~~agTsPwglIv~lll 83 (116)
T COG5336 68 KFAGTSPWGLIVFLLL 83 (116)
T ss_pred HhcCCCcHHHHHHHHH
Confidence 3588999997666543
No 3
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=40.71 E-value=17 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHHH
Q 033273 18 PLPLFFFMLILFFVLG 33 (123)
Q Consensus 18 P~~ll~~l~iv~~ll~ 33 (123)
++-|++|+++|.+.++
T Consensus 6 sllLlfflG~ISlSlC 21 (46)
T PF03032_consen 6 SLLLLFFLGTISLSLC 21 (46)
T ss_pred HHHHHHHHHHcccchH
Confidence 6677777777776553
No 4
>PTZ00370 STEVOR; Provisional
Probab=35.87 E-value=26 Score=29.85 Aligned_cols=15 Identities=53% Similarity=1.057 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHH
Q 033273 93 PWGVAALLVLVLFMV 107 (123)
Q Consensus 93 PWGVA~lLvlLL~lv 107 (123)
|||.|++++++|..+
T Consensus 256 Pygiaalvllil~vv 270 (296)
T PTZ00370 256 PYGIAALVLLILAVV 270 (296)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888777554
No 5
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.09 E-value=27 Score=29.73 Aligned_cols=15 Identities=47% Similarity=1.032 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHH
Q 033273 93 PWGVAALLVLVLFMV 107 (123)
Q Consensus 93 PWGVA~lLvlLL~lv 107 (123)
|||.|++++++|..+
T Consensus 260 Pcgiaalvllil~vv 274 (295)
T TIGR01478 260 PYGIAALVLIILTVV 274 (295)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999888777554
No 6
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=35.00 E-value=3.6e+02 Score=24.76 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033273 20 PLFFFMLILFFVLGLSWYI-NYESVFEDFMNQVKFYLMLSPLILLLI 65 (123)
Q Consensus 20 ~ll~~l~iv~~ll~~S~Y~-~ye~~~e~~~~ql~~~L~llPl~Lil~ 65 (123)
|+=.+++++++.+.++... .+++..++..+++.-++-..|++++++
T Consensus 215 Plki~~gl~~l~l~lp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (609)
T PRK12772 215 PIKILVGLTAFVIALPLFLKVISSAFSNLPDAIRGFYKAIPLLLIFA 261 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 4444455555555555554 567888888888888999999999875
No 7
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=29.39 E-value=75 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033273 50 QVKFYLMLSPLILLLIV 66 (123)
Q Consensus 50 ql~~~L~llPl~Lil~v 66 (123)
...-+++++|+++.+++
T Consensus 74 ~~~y~l~~iPll~g~l~ 90 (182)
T PF09323_consen 74 LWSYFLFLIPLLIGFLF 90 (182)
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 34467999999888876
No 8
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=29.22 E-value=57 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.583 Sum_probs=15.6
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 033273 89 AGGSPWGVAALLVLVLFMVSH 109 (123)
Q Consensus 89 ~GsSPWGVA~lLvlLL~lvsy 109 (123)
.-||||++.+.++++++.+--
T Consensus 11 ~~gs~~~f~~~~~~Ii~W~i~ 31 (132)
T PF04120_consen 11 VAGSPWAFVIAVAVIIVWAIS 31 (132)
T ss_pred HHCCHHHHHHHHHHHHHHHHH
Confidence 458999988887777766543
No 9
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=26.10 E-value=76 Score=19.46 Aligned_cols=16 Identities=25% Similarity=0.881 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHHH
Q 033273 92 SPWGVAALLVLVLFMV 107 (123)
Q Consensus 92 SPWGVA~lLvlLL~lv 107 (123)
+-||..+++++|++|.
T Consensus 25 ~k~~~~~~~~~li~la 40 (44)
T PF07835_consen 25 TKWGTIAIAAILIFLA 40 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5577777777776664
No 10
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.45 E-value=1.7e+02 Score=20.59 Aligned_cols=26 Identities=12% Similarity=0.534 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHH
Q 033273 25 MLILFFVLGLSWYINYESVFEDFMNQ 50 (123)
Q Consensus 25 l~iv~~ll~~S~Y~~ye~~~e~~~~q 50 (123)
+.++-++.++-.|..+|...++.+++
T Consensus 110 fi~IYliIw~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 110 FIIIYLIIWLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666677777777766654
No 11
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=20.70 E-value=66 Score=16.79 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=7.2
Q ss_pred HHHHHHHHHhcc
Q 033273 100 LVLVLFMVSHQS 111 (123)
Q Consensus 100 LvlLL~lvsyQS 111 (123)
+..+|+++||+.
T Consensus 7 IlvvLLliSf~a 18 (19)
T PF13956_consen 7 ILVVLLLISFPA 18 (19)
T ss_pred HHHHHHhccccC
Confidence 345566777763
No 12
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=20.57 E-value=36 Score=18.96 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=7.4
Q ss_pred cccchhhcc
Q 033273 110 QSSLHERWF 118 (123)
Q Consensus 110 QSsf~~~Wf 118 (123)
|.+|++.|-
T Consensus 12 QeTF~~LW~ 20 (25)
T PF08563_consen 12 QETFSDLWN 20 (25)
T ss_dssp TCCHHHHHH
T ss_pred HHHHHHHHH
Confidence 788888884
Done!