Query 033273
Match_columns 123
No_of_seqs 95 out of 97
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qle_D Cytochrome AA3, ccytoch 32.1 33 0.0011 20.2 2.4 16 92-107 24-39 (43)
2 1m56_D Cytochrome C oxidase; m 23.1 58 0.002 19.8 2.4 17 91-107 31-47 (51)
3 4hkr_A Calcium release-activat 19.2 2.3E+02 0.0078 22.1 5.6 46 14-66 117-163 (214)
4 1emz_A Envelope glycoprotein E 14.5 1.6E+02 0.0054 15.7 2.6 13 91-103 1-13 (26)
5 1q2f_A PNC27; P53 protein, MDM 14.3 43 0.0015 18.8 0.3 9 110-118 5-13 (32)
6 1gp7_A Phospholipase A2; snake 13.4 41 0.0014 24.4 0.0 18 18-35 3-20 (151)
7 1m56_C Cytochrome C oxidase; m 8.8 6.5E+02 0.022 19.2 5.6 22 18-39 16-37 (266)
8 1m93_A Serine proteinase inhib 8.2 2.5E+02 0.0084 16.4 2.3 15 91-105 18-32 (55)
9 3arc_L Photosystem II reaction 8.0 3.3E+02 0.011 15.6 2.6 18 92-109 17-34 (37)
10 2qez_A Ethanolamine ammonia-ly 7.0 1.2E+02 0.0042 26.1 0.6 10 106-115 402-412 (455)
No 1
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=32.09 E-value=33 Score=20.23 Aligned_cols=16 Identities=13% Similarity=0.526 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHHH
Q 033273 92 SPWGVAALLVLVLFMV 107 (123)
Q Consensus 92 SPWGVA~lLvlLL~lv 107 (123)
+-||..+.++++++|.
T Consensus 24 ~k~gt~~~~~~ll~ma 39 (43)
T 1qle_D 24 ATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888888875
No 2
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=23.10 E-value=58 Score=19.82 Aligned_cols=17 Identities=12% Similarity=0.561 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHHHHHH
Q 033273 91 GSPWGVAALLVLVLFMV 107 (123)
Q Consensus 91 sSPWGVA~lLvlLL~lv 107 (123)
-+-||..+.++++++|.
T Consensus 31 ~~k~gt~~~~~~ll~la 47 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLA 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35688888888877775
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=19.16 E-value=2.3e+02 Score=22.06 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=31.2
Q ss_pred cccccHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033273 14 AFSLPLPLFFFMLILFFVLGLSWYI-NYESVFEDFMNQVKFYLMLSPLILLLIV 66 (123)
Q Consensus 14 ~~slP~~ll~~l~iv~~ll~~S~Y~-~ye~~~e~~~~ql~~~L~llPl~Lil~v 66 (123)
.||.=+.+++|++-+..+.|+--|- ++.+....+ .++.|++++|++
T Consensus 117 ~fST~lGi~LFL~evall~WVKF~~~~~~aa~~~t-------~vliPv~i~F~~ 163 (214)
T 4hkr_A 117 AFSTLLGLILFLLEIAILCWVKFYDLSRRAAWSAT-------VVLIPVMIIFMA 163 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHH-------HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhheEEeecCCcHHHHHHH-------HHHHHHHHHHHH
Confidence 5666778899999999999886654 443333332 566788777665
No 4
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=14.50 E-value=1.6e+02 Score=15.65 Aligned_cols=13 Identities=38% Similarity=0.785 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHH
Q 033273 91 GSPWGVAALLVLV 103 (123)
Q Consensus 91 sSPWGVA~lLvlL 103 (123)
|.+|||-+-++..
T Consensus 1 g~hwGvl~glayf 13 (26)
T 1emz_A 1 GAHWGVLAGIAYF 13 (26)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCcchhhHHHHHH
Confidence 4689998776543
No 5
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=14.32 E-value=43 Score=18.83 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=7.5
Q ss_pred cccchhhcc
Q 033273 110 QSSLHERWF 118 (123)
Q Consensus 110 QSsf~~~Wf 118 (123)
|.+|+|.|-
T Consensus 5 qq~FadLW~ 13 (32)
T 1q2f_A 5 QETFSDLWK 13 (32)
T ss_dssp STTTTTHHH
T ss_pred HHHHHHHHH
Confidence 778999984
No 6
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=13.37 E-value=41 Score=24.38 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 033273 18 PLPLFFFMLILFFVLGLS 35 (123)
Q Consensus 18 P~~ll~~l~iv~~ll~~S 35 (123)
|.|||+++++.+.+++.+
T Consensus 3 ~~~ll~~~~v~v~ll~~~ 20 (151)
T 1gp7_A 3 PAHLLVLSAVCVSLLGAS 20 (151)
T ss_dssp ------------------
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 899999998877777743
No 7
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=8.79 E-value=6.5e+02 Score=19.25 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=14.3
Q ss_pred cHHHHHHHHHHHHHHHhhhhhh
Q 033273 18 PLPLFFFMLILFFVLGLSWYIN 39 (123)
Q Consensus 18 P~~ll~~l~iv~~ll~~S~Y~~ 39 (123)
|.|+..-+++..++++...|++
T Consensus 16 pwPl~~a~~~~~~~~g~~~~~~ 37 (266)
T 1m56_C 16 IWPFMASVGAFVMLFGAVLWMH 37 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666666666666554
No 8
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=8.25 E-value=2.5e+02 Score=16.43 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.3
Q ss_pred CChHHHHHHHHHHHH
Q 033273 91 GSPWGVAALLVLVLF 105 (123)
Q Consensus 91 sSPWGVA~lLvlLL~ 105 (123)
=||.+|...+.++..
T Consensus 18 ~SP~Si~~aLaml~~ 32 (55)
T 1m93_A 18 ISPPSISSVLTILYY 32 (55)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHh
Confidence 389999999888764
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=8.02 E-value=3.3e+02 Score=15.58 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 033273 92 SPWGVAALLVLVLFMVSH 109 (123)
Q Consensus 92 SPWGVA~lLvlLL~lvsy 109 (123)
-=||.-++.|+-.+.-||
T Consensus 17 Ly~GLLlifvlavlFssy 34 (37)
T 3arc_L 17 LYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 359988777776666555
No 10
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=6.98 E-value=1.2e+02 Score=26.05 Aligned_cols=10 Identities=40% Similarity=0.670 Sum_probs=6.5
Q ss_pred HHHhccc-chh
Q 033273 106 MVSHQSS-LHE 115 (123)
Q Consensus 106 lvsyQSs-f~~ 115 (123)
|++|||+ |||
T Consensus 402 MLnYqstsfHD 412 (455)
T 2qez_A 402 MLNYQTTGYHE 412 (455)
T ss_dssp HHHHHCCCHHH
T ss_pred eecccccccch
Confidence 7777763 665
Done!