Query 033273
Match_columns 123
No_of_seqs 95 out of 97
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 19:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033273.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033273hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ansa_ g.11.1.1 (A:) Neurotox 14.4 10 0.00075 19.1 -0.9 7 89-95 8-14 (27)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 11.3 1.5E+02 0.011 17.3 4.2 26 21-47 9-34 (158)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 8.0 1.5E+02 0.011 15.5 2.6 18 92-109 17-34 (37)
4 d1iwga8 f.35.1.1 (A:513-566,A: 5.9 3.9E+02 0.028 17.7 6.3 18 94-111 63-80 (222)
5 d1f2va_ c.23.17.1 (A:) Precorr 5.8 1.3E+02 0.0093 21.2 1.9 16 88-103 190-205 (209)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 5.2 1.3E+02 0.0093 15.9 1.2 23 23-45 9-31 (37)
7 d1v54c_ f.25.1.1 (C:) Mitochon 4.9 5E+02 0.036 17.8 4.9 23 18-40 13-35 (259)
8 d2f7fa2 d.41.2.1 (A:4-140) Put 4.4 1.9E+02 0.014 18.3 2.0 19 93-111 117-136 (137)
9 d1rh5a_ f.41.1.1 (A:) Preprote 4.3 4.8E+02 0.035 19.3 4.6 7 18-24 312-318 (422)
10 d1m56c_ f.25.1.1 (C:) Bacteria 4.2 5.7E+02 0.041 17.4 5.4 23 18-40 15-37 (265)
No 1
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=14.41 E-value=10 Score=19.07 Aligned_cols=7 Identities=71% Similarity=1.811 Sum_probs=5.5
Q ss_pred CCCChHH
Q 033273 89 AGGSPWG 95 (123)
Q Consensus 89 ~GsSPWG 95 (123)
-||-|||
T Consensus 8 wggcpwg 14 (27)
T d1ansa_ 8 WGGCPWG 14 (27)
T ss_dssp TTTCSSS
T ss_pred ccCCccc
Confidence 4788887
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=11.27 E-value=1.5e+02 Score=17.27 Aligned_cols=26 Identities=23% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 033273 21 LFFFMLILFFVLGLSWYINYESVFEDF 47 (123)
Q Consensus 21 ll~~l~iv~~ll~~S~Y~~ye~~~e~~ 47 (123)
+++|++|+..+. ++.|.+|.+..+..
T Consensus 9 ViaIIgILaaia-~P~~~~~~~~a~~~ 34 (158)
T d2pila_ 9 VIAIVGILAAVA-LPAYQDYTARAQVS 34 (158)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344444444444 55666665544443
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.02 E-value=1.5e+02 Score=15.53 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 033273 92 SPWGVAALLVLVLFMVSH 109 (123)
Q Consensus 92 SPWGVA~lLvlLL~lvsy 109 (123)
-=||.-+..|+-.+.-||
T Consensus 17 Ly~GlLlifvl~vLFssY 34 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 359987777765555554
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.94 E-value=3.9e+02 Score=17.67 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 033273 94 WGVAALLVLVLFMVSHQS 111 (123)
Q Consensus 94 WGVA~lLvlLL~lvsyQS 111 (123)
-++|++++++++.+.|+|
T Consensus 63 ~~la~i~i~liL~~~frS 80 (222)
T d1iwga8 63 YAISLIVVFLCLAALYES 80 (222)
T ss_dssp HHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 356677777677777765
No 5
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=5.78 E-value=1.3e+02 Score=21.18 Aligned_cols=16 Identities=50% Similarity=0.545 Sum_probs=12.8
Q ss_pred cCCCChHHHHHHHHHH
Q 033273 88 RAGGSPWGVAALLVLV 103 (123)
Q Consensus 88 r~GsSPWGVA~lLvlL 103 (123)
|-||||+.+|.+=.++
T Consensus 190 rkGGS~vAaAivNALl 205 (209)
T d1f2va_ 190 RLGGSAMTAAALNSLA 205 (209)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 7799999999875543
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.25 E-value=1.3e+02 Score=15.95 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHH
Q 033273 23 FFMLILFFVLGLSWYINYESVFE 45 (123)
Q Consensus 23 ~~l~iv~~ll~~S~Y~~ye~~~e 45 (123)
.+-+--+||.+.-.|..-|+..|
T Consensus 9 ~ly~Fw~FFagLi~YL~rE~~RE 31 (37)
T d1eysh2 9 TIWAFWLFFFGLIIYLRREDKRE 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 34444556666777887776554
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.87 E-value=5e+02 Score=17.83 Aligned_cols=23 Identities=26% Similarity=0.532 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhh
Q 033273 18 PLPLFFFMLILFFVLGLSWYINY 40 (123)
Q Consensus 18 P~~ll~~l~iv~~ll~~S~Y~~y 40 (123)
|.|++.=+++..+..+..-|++.
T Consensus 13 pWP~~~s~~~~~~~~g~~~~~~~ 35 (259)
T d1v54c_ 13 PWPLTGALSALLMTSGLTMWFHF 35 (259)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 77887777777777777666653
No 8
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.42 E-value=1.9e+02 Score=18.34 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=14.9
Q ss_pred hHHHHHH-HHHHHHHHHhcc
Q 033273 93 PWGVAAL-LVLVLFMVSHQS 111 (123)
Q Consensus 93 PWGVA~l-LvlLL~lvsyQS 111 (123)
||.-+.+ =..+|-++||||
T Consensus 117 p~~~~~L~Et~lL~iin~~s 136 (137)
T d2f7fa2 117 PLAQCQLVETALLNMVNFQT 136 (137)
T ss_dssp EHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccc
Confidence 9995544 468999999996
No 9
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.32 E-value=4.8e+02 Score=19.29 Aligned_cols=7 Identities=14% Similarity=0.681 Sum_probs=3.4
Q ss_pred cHHHHHH
Q 033273 18 PLPLFFF 24 (123)
Q Consensus 18 P~~ll~~ 24 (123)
|.+....
T Consensus 312 p~~~~~Y 318 (422)
T d1rh5a_ 312 PIHAIVY 318 (422)
T ss_dssp HHHHHHH
T ss_pred ccchHHH
Confidence 5554443
No 10
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.17 E-value=5.7e+02 Score=17.40 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhhhh
Q 033273 18 PLPLFFFMLILFFVLGLSWYINY 40 (123)
Q Consensus 18 P~~ll~~l~iv~~ll~~S~Y~~y 40 (123)
|.|++.-+++..+..+...+++.
T Consensus 15 pWPi~~s~~l~~~~~g~~~~~~~ 37 (265)
T d1m56c_ 15 IWPFMASVGAFVMLFGAVLWMHG 37 (265)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc
Confidence 55555555555555555555443
Done!