BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033274
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DY0|A Chain A, Murine Endostatin, Crystal Form Ii
pdb|1DY1|A Chain A, Murine Endostatin, Crystal Form Iii
Length = 188
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 82 ENVTRKCAWPSTLPWFGYTPQQSNILLSYC 111
+V R AWP W G P ++ SYC
Sbjct: 110 RDVLRHPAWPQKSVWHGSDPSGRRLMESYC 139
>pdb|1KOE|A Chain A, Endostatin
Length = 172
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 82 ENVTRKCAWPSTLPWFGYTPQQSNILLSYC 111
+V R AWP W G P ++ SYC
Sbjct: 100 RDVLRHPAWPQKSVWHGSDPSGRRLMESYC 129
>pdb|1DY2|A Chain A, Murine Collagen Alpha1(Xv), Endostatin Domain
Length = 180
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 24/73 (32%)
Query: 41 GPGGQFNECLKAYQELNKCLAVIYQFFFTGMTNVGPCCGAIENVTRKCAWPSTLPWFGYT 100
G GGQFN + Y F G +V +WP + W G
Sbjct: 85 GDGGQFNTHIPIYS-------------FDG-----------RDVMTDPSWPQKVVWHGSN 120
Query: 101 PQQSNILLSYCRA 113
P ++ YC A
Sbjct: 121 PHGVRLVDKYCEA 133
>pdb|3FEG|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 379
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 51 KAYQELNKCLAVIYQFFFTGMTNVGPCCGAIENVTRKCAWPSTLPWFGYTPQQ 103
+AYQ + L ++ V P G + N+ +C+ P LP G P++
Sbjct: 32 RAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPRE 84
>pdb|2VH1|A Chain A, Crystal Structure Of Bacterial Cell Division Protein Ftsq
From E.Coli
pdb|2VH1|B Chain B, Crystal Structure Of Bacterial Cell Division Protein Ftsq
From E.Coli
Length = 220
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 19 ANASAMNKPASYNLKEGLQASGGPGGQFNECLKAYQELNKCLA 61
A + + P K+ L GP G NE L+ Y+E+ + LA
Sbjct: 84 AEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQMLA 126
>pdb|1BNL|A Chain A, Zinc Dependent Dimers Observed In Crystals Of Human
Endostatin
pdb|1BNL|B Chain B, Zinc Dependent Dimers Observed In Crystals Of Human
Endostatin
pdb|1BNL|C Chain C, Zinc Dependent Dimers Observed In Crystals Of Human
Endostatin
pdb|1BNL|D Chain D, Zinc Dependent Dimers Observed In Crystals Of Human
Endostatin
Length = 178
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 82 ENVTRKCAWPSTLPWFGYTPQQSNILLSYC 111
++V R WP W G P + SYC
Sbjct: 106 KDVLRHPTWPQKSVWHGSDPNGRRLTESYC 135
>pdb|3LQ3|A Chain A, Crystal Structure Of Human Choline Kinase Beta In Complex
With Phosphorylated Hemicholinium-3 And Adenosine
Nucleotide
Length = 401
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 51 KAYQELNKCLAVIYQFFFTGMTNVGPCCGAIENVTRKCAWPSTLPWFGYTPQQ 103
+AYQ + L ++ V P G + N+ +C+ P LP G P++
Sbjct: 54 RAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPRE 106
>pdb|2IG7|A Chain A, Crystal Structure Of Human Choline Kinase B
pdb|2IG7|B Chain B, Crystal Structure Of Human Choline Kinase B
Length = 401
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 51 KAYQELNKCLAVIYQFFFTGMTNVGPCCGAIENVTRKCAWPSTLPWFGYTPQQ 103
+AYQ + L ++ V P G + N+ +C+ P LP G P++
Sbjct: 54 RAYQWCREYLGGAWRRVQPEELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPRE 106
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 28 ASYNLKEGLQASGGPGGQFNECLKAYQ-ELNKCLAVIYQFFFTGMTNVGPCCGAIENVTR 86
AS +E L Q E L Q +LN C + + G +G C E++ +
Sbjct: 431 ASAEYQEALSRITSVVQQHQEALVPAQPQLNVCNWAVMNWAPPGCEKLGKCLTPPESIPK 490
Query: 87 KCAW 90
KC W
Sbjct: 491 KCLW 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,381,139
Number of Sequences: 62578
Number of extensions: 124055
Number of successful extensions: 196
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 10
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)