Query 033274
Match_columns 123
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 1.9E-28 4E-33 181.9 8.9 72 45-122 44-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 1.7E-20 3.7E-25 123.3 2.2 64 48-112 1-70 (70)
3 PF07172 GRP: Glycine rich pro 91.9 0.17 3.6E-06 36.3 2.8 23 1-23 1-24 (95)
4 PLN00214 putative protein; Pro 80.9 3.8 8.2E-05 30.9 4.7 39 47-88 37-76 (115)
5 cd04660 nsLTP_like nsLTP_like: 27.6 28 0.00062 22.8 0.7 32 53-88 5-39 (73)
6 PF15240 Pro-rich: Proline-ric 24.5 52 0.0011 26.4 1.8 13 12-24 5-17 (179)
7 PF03058 Sar8_2: Sar8.2 family 23.8 1E+02 0.0022 22.6 3.0 18 1-18 1-19 (93)
8 PF11471 Sugarporin_N: Maltopo 23.2 1.2E+02 0.0025 20.1 3.0 10 28-37 26-35 (60)
9 PF15284 PAGK: Phage-encoded v 21.2 90 0.002 21.3 2.2 22 3-24 4-25 (61)
10 smart00499 AAI Plant lipid tra 19.1 54 0.0012 20.0 0.7 16 73-88 23-40 (79)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.95 E-value=1.9e-28 Score=181.92 Aligned_cols=72 Identities=31% Similarity=0.732 Sum_probs=66.7
Q ss_pred ChhhhhhhhhcchhhHHHHHHHHHhCcc-cccc-chHHHHHhhhcCCCCCCCCCCCCCCcchhhHHhhhhhcCCCCCCCC
Q 033274 45 QFNECLKAYQELNKCLAVIYQFFFTGMT-NVGP-CCGAIENVTRKCAWPSTLPWFGYTPQQSNILLSYCRAISPAPSPAQ 122 (123)
Q Consensus 45 ~~~~CWssl~~l~~C~~EI~~ffl~G~~-~iGp-CC~Ai~~i~~~C~WP~M~~~~gFtp~e~~~Lkg~C~~~~pAp~pa~ 122 (123)
|..||||||++++||+.||++++++||+ +||+ |||||++.+ || ||+| +.++|+| ++||++|+++..+++|.+
T Consensus 44 d~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nC-wP~~-P~~P~fP---p~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 44 DITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NC-IPKI-PFIPFFP---PMLKEQCSRVAGATPPIP 117 (118)
T ss_pred cHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-cc-ccCC-cCCCccc---hHHHHHHhcccCCCCCCC
Confidence 8999999999999999999999999999 9999 999999977 99 9996 8888887 699999999987777754
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.80 E-value=1.7e-20 Score=123.27 Aligned_cols=64 Identities=33% Similarity=0.777 Sum_probs=58.5
Q ss_pred hhhhhhhcchhhHHHHHHHHHhCc-ccccc-chHHHHHhhhcCCCCCCCCCCCCCCcchh----hHHhhhh
Q 033274 48 ECLKAYQELNKCLAVIYQFFFTGM-TNVGP-CCGAIENVTRKCAWPSTLPWFGYTPQQSN----ILLSYCR 112 (123)
Q Consensus 48 ~CWssl~~l~~C~~EI~~ffl~G~-~~iGp-CC~Ai~~i~~~C~WP~M~~~~gFtp~e~~----~Lkg~C~ 112 (123)
|||+++.++++|+.||+.+|++|+ .+||+ ||++|+.++++| ||+|+..++++|.+.+ .|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C-~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDC-HPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhH-HHHHHHHccCCCCccchhHHHHHhhcC
Confidence 699999999999999999999999 59999 999999999999 9996666667777778 9999996
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.91 E-value=0.17 Score=36.29 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=12.5
Q ss_pred CcchHHHHHHHHH-HHHHHHhhhc
Q 033274 1 MALKNLFLIILFL-ITSLVANASA 23 (123)
Q Consensus 1 Ma~~~~~l~~~~~-~~~l~~~~~a 23 (123)
||||+++|+.++| +.+||++.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 9987755554444 3344444333
No 4
>PLN00214 putative protein; Provisional
Probab=80.93 E-value=3.8 Score=30.94 Aligned_cols=39 Identities=31% Similarity=0.731 Sum_probs=30.7
Q ss_pred hhhhhhhhcchhhHHHHHHHHH-hCccccccchHHHHHhhhcC
Q 033274 47 NECLKAYQELNKCLAVIYQFFF-TGMTNVGPCCGAIENVTRKC 88 (123)
Q Consensus 47 ~~CWssl~~l~~C~~EI~~ffl-~G~~~iGpCC~Ai~~i~~~C 88 (123)
..|-.-+. +-|..||+..++ ||.+ ..+||+-|...+.+|
T Consensus 37 ~~C~~Kmt--~KCa~EI~a~i~~N~t~-s~~CC~~LVk~GK~C 76 (115)
T PLN00214 37 NTCLVKIT--PKCALDIIAVVFENGTL-IDPCCNDLVKEGKVC 76 (115)
T ss_pred HHHHhhcc--HhhHHHHHHHHHcCCCC-chHHHHHHHHHhhHH
Confidence 34555554 679999999999 5544 555999999999999
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=27.58 E-value=28 Score=22.83 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=19.9
Q ss_pred hhcchhhHHHHHHHHHhCc--ccccc-chHHHHHhhhcC
Q 033274 53 YQELNKCLAVIYQFFFTGM--TNVGP-CCGAIENVTRKC 88 (123)
Q Consensus 53 l~~l~~C~~EI~~ffl~G~--~~iGp-CC~Ai~~i~~~C 88 (123)
+..|..|.. ++..|. ..-.. ||.+|+.++..|
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C 39 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPC 39 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCC
Confidence 344555654 333333 23456 999999988778
No 6
>PF15240 Pro-rich: Proline-rich
Probab=24.49 E-value=52 Score=26.43 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhcC
Q 033274 12 FLITSLVANASAM 24 (123)
Q Consensus 12 ~~~~~l~~~~~a~ 24 (123)
||.++|+|+++|-
T Consensus 5 LLSvALLALSSAQ 17 (179)
T PF15240_consen 5 LLSVALLALSSAQ 17 (179)
T ss_pred HHHHHHHHhhhcc
Confidence 3345555555544
No 7
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=23.79 E-value=1e+02 Score=22.64 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=10.3
Q ss_pred CcchH-HHHHHHHHHHHHH
Q 033274 1 MALKN-LFLIILFLITSLV 18 (123)
Q Consensus 1 Ma~~~-~~l~~~~~~~~l~ 18 (123)
|++|+ +||.++|-+.+++
T Consensus 1 M~~Ktnlfl~lSLailLmI 19 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMI 19 (93)
T ss_pred CcchhhhHHHHHHHHHHHH
Confidence 78765 6666665333333
No 8
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.17 E-value=1.2e+02 Score=20.10 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=6.8
Q ss_pred Cccchhhhhh
Q 033274 28 ASYNLKEGLQ 37 (123)
Q Consensus 28 ~~~~l~~rL~ 37 (123)
+..+|+.||.
T Consensus 26 ~~ltiEqRLa 35 (60)
T PF11471_consen 26 APLTIEQRLA 35 (60)
T ss_pred ccCCHHHHHH
Confidence 3446888886
No 9
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.24 E-value=90 Score=21.26 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHhhhcC
Q 033274 3 LKNLFLIILFLITSLVANASAM 24 (123)
Q Consensus 3 ~~~~~l~~~~~~~~l~~~~~a~ 24 (123)
+|++||.++|+|.+..-+++++
T Consensus 4 ~ksifL~l~~~LsA~~FSasam 25 (61)
T PF15284_consen 4 FKSIFLALVFILSAAGFSASAM 25 (61)
T ss_pred HHHHHHHHHHHHHHhhhhHHHH
Confidence 5778887776544443333333
No 10
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=19.11 E-value=54 Score=19.99 Aligned_cols=16 Identities=19% Similarity=0.833 Sum_probs=13.0
Q ss_pred cccc-chHHHHHh-hhcC
Q 033274 73 NVGP-CCGAIENV-TRKC 88 (123)
Q Consensus 73 ~iGp-CC~Ai~~i-~~~C 88 (123)
.... ||..++.+ ...|
T Consensus 23 ~p~~~CC~~l~~~~~~~C 40 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQC 40 (79)
T ss_pred CCchHHHHHHHHhcccCC
Confidence 3344 99999999 8888
Done!