Query 033274
Match_columns 123
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ank_A Transthyretin; hormone 12.9 40 0.0014 24.8 -0.1 11 1-11 1-11 (147)
2 1w2q_A Conglutin, ARA H 6; all 9.9 1.1E+02 0.0036 21.9 1.3 49 40-88 7-73 (127)
3 3b1j_C CP12; alpha/beta fold, 8.0 1.6E+02 0.0055 15.8 1.2 14 102-115 2-15 (26)
4 3l32_A Phosphoprotein; antipar 7.3 1.8E+02 0.0062 17.8 1.4 20 31-54 15-34 (45)
5 2knp_A Mcocc-1; disulfide-rich 7.1 57 0.0019 18.7 -1.0 10 87-97 18-27 (33)
6 2i7u_A Four-alpha-helix bundle 7.0 1.6E+02 0.0054 18.9 1.0 10 39-48 30-39 (62)
7 2jz3_A Suppressor of cytokine 6.8 3.6E+02 0.012 15.3 2.5 30 74-112 4-34 (40)
8 2q22_A Uncharacterized protein 6.5 2.4E+02 0.0083 20.6 1.9 43 61-106 41-91 (139)
9 2ljo_A Non-specific lipid-tran 6.5 2.5E+02 0.0087 18.5 1.9 32 49-85 4-36 (93)
10 1ry3_A Carnocin CP52, bacterio 6.0 1.8E+02 0.0062 18.8 0.9 25 61-92 9-35 (64)
No 1
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=12.95 E-value=40 Score=24.84 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=0.0
Q ss_pred CcchHHHHHHH
Q 033274 1 MALKNLFLIIL 11 (123)
Q Consensus 1 Ma~~~~~l~~~ 11 (123)
||+.+++|+.+
T Consensus 1 m~~~~~~l~~l 11 (147)
T 4ank_A 1 MASHRLLLLCL 11 (147)
T ss_dssp -----------
T ss_pred CchHHHHHHHH
Confidence 88888776654
No 2
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea}
Probab=9.95 E-value=1.1e+02 Score=21.87 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=36.2
Q ss_pred CCCCCChhhhhhhh--hcchhhHHHHHHHHHhCc----c----------ccccchHHHHHh--hhcC
Q 033274 40 GGPGGQFNECLKAY--QELNKCLAVIYQFFFTGM----T----------NVGPCCGAIENV--TRKC 88 (123)
Q Consensus 40 ~~~gg~~~~CWssl--~~l~~C~~EI~~ffl~G~----~----------~iGpCC~Ai~~i--~~~C 88 (123)
.|+||...+|+.-+ .+|.+|-.=|.+-...++ . .+.-||.-++.+ +..|
T Consensus 7 ~~~~~~~qqC~qq~q~~qL~~Cq~yl~q~~~~~~~~~~~~~~~~~~~e~~lqqCC~qL~q~~~~~qC 73 (127)
T 1w2q_A 7 RGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGC 73 (127)
T ss_dssp CCCCSTTCCHHHHHTTCCCHHHHHHHHTGGGSSSSSCSCCCTTSCCHHHHHHHHHHHHHHTSCCCTT
T ss_pred CCCCCcccccHHHHHHhhHHHHHHHHHHHHhhccCCccchhhcccccHHHHHHHHHHHHhhccCCCc
Confidence 35667778999988 679999988887665443 1 122299999999 8888
No 3
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=8.01 E-value=1.6e+02 Score=15.77 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=9.5
Q ss_pred cchhhHHhhhhhcC
Q 033274 102 QQSNILLSYCRAIS 115 (123)
Q Consensus 102 ~e~~~Lkg~C~~~~ 115 (123)
++.+.|..||+...
T Consensus 2 ~~~t~lE~yC~enP 15 (26)
T 3b1j_C 2 ETEPFFGDYCSENP 15 (26)
T ss_dssp --CTTHHHHHHHCT
T ss_pred CcccHHHHHHHHCC
Confidence 45678999998753
No 4
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=7.35 E-value=1.8e+02 Score=17.84 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=15.7
Q ss_pred chhhhhhcCCCCCCChhhhhhhhh
Q 033274 31 NLKEGLQASGGPGGQFNECLKAYQ 54 (123)
Q Consensus 31 ~l~~rL~~~~~~gg~~~~CWssl~ 54 (123)
-+..|++.++ .+-|=||.+.
T Consensus 15 qiVrkmKtGe----~FfKiWS~~~ 34 (45)
T 3l32_A 15 QIVRQMRSGE----RFLKIWSQTV 34 (45)
T ss_dssp HHHHHHTTTC----CHHHHHHHHH
T ss_pred HHHHHHHccc----cHHHHHHHHH
Confidence 4677888765 7999999874
No 5
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=7.14 E-value=57 Score=18.73 Aligned_cols=10 Identities=40% Similarity=1.328 Sum_probs=6.7
Q ss_pred cCCCCCCCCCC
Q 033274 87 KCAWPSTLPWF 97 (123)
Q Consensus 87 ~C~WP~M~~~~ 97 (123)
+| ||..-|-+
T Consensus 18 rc-wptvtpgv 27 (33)
T 2knp_A 18 RC-WPTVTPGV 27 (33)
T ss_dssp CE-EECSSTTE
T ss_pred ee-ccccCCCe
Confidence 67 88766543
No 6
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=7.04 E-value=1.6e+02 Score=18.88 Aligned_cols=10 Identities=40% Similarity=0.930 Sum_probs=4.6
Q ss_pred CCCCCCChhh
Q 033274 39 SGGPGGQFNE 48 (123)
Q Consensus 39 ~~~~gg~~~~ 48 (123)
++||||++++
T Consensus 30 ggggggelmk 39 (62)
T 2i7u_A 30 GGGGGGELMK 39 (62)
T ss_dssp SCSSSCHHHH
T ss_pred CCCchHHHHH
Confidence 3344445544
No 7
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=6.80 E-value=3.6e+02 Score=15.30 Aligned_cols=30 Identities=3% Similarity=-0.005 Sum_probs=20.1
Q ss_pred ccc-chHHHHHhhhcCCCCCCCCCCCCCCcchhhHHhhhh
Q 033274 74 VGP-CCGAIENVTRKCAWPSTLPWFGYTPQQSNILLSYCR 112 (123)
Q Consensus 74 iGp-CC~Ai~~i~~~C~WP~M~~~~gFtp~e~~~Lkg~C~ 112 (123)
+-. |-.+|+... +|.+ ..++.+ +.||+|..
T Consensus 4 LQHLCR~~I~~~~-~~~~----~~LpLP----~~Lk~yL~ 34 (40)
T 2jz3_A 4 LQHLCRKTVNGHL-DSYE----KVTQLP----GPIREFLD 34 (40)
T ss_pred HHHHHHHHHHHHc-CCCc----ccCCCC----HHHHHHHH
Confidence 346 889999987 7723 344445 57888864
No 8
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=6.50 E-value=2.4e+02 Score=20.58 Aligned_cols=43 Identities=7% Similarity=0.093 Sum_probs=26.4
Q ss_pred HHHHHHHHhCcc-ccccch-------HHHHHhhhcCCCCCCCCCCCCCCcchhh
Q 033274 61 AVIYQFFFTGMT-NVGPCC-------GAIENVTRKCAWPSTLPWFGYTPQQSNI 106 (123)
Q Consensus 61 ~EI~~ffl~G~~-~iGpCC-------~Ai~~i~~~C~WP~M~~~~gFtp~e~~~ 106 (123)
.|+.....+-.. .||-|= .|.+.+.+..+||.|... +++|+++
T Consensus 41 ~aL~~~~~~sd~~~lGIcA~s~~~a~~ALr~~~~alg~~~~~~~---~~~~GpV 91 (139)
T 2q22_A 41 RALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDL---PVVEGPV 91 (139)
T ss_dssp HHHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTTCCCC-CC---CCCSSSE
T ss_pred HHHHHHHhhCCcEEEEeecCCHHHHHHHHHHHHHHhCCCccccC---CCCCCCE
Confidence 344444333333 777642 577888999999987754 5666654
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=6.48 E-value=2.5e+02 Score=18.53 Aligned_cols=32 Identities=31% Similarity=0.867 Sum_probs=20.0
Q ss_pred hhhhhhcchhhHHHHHHHHHhCcccccc-chHHHHHhh
Q 033274 49 CLKAYQELNKCLAVIYQFFFTGMTNVGP-CCGAIENVT 85 (123)
Q Consensus 49 CWssl~~l~~C~~EI~~ffl~G~~~iGp-CC~Ai~~i~ 85 (123)
|=..+..+-.|.. |++|.....+ ||..++.+.
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-----HHcCCCCCCCchhhHHHHHH
Confidence 4444455555543 4566556666 999998874
No 10
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=5.95 E-value=1.8e+02 Score=18.84 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=17.1
Q ss_pred HHHHHHHHhCcc-cccc-chHHHHHhhhcCCCCC
Q 033274 61 AVIYQFFFTGMT-NVGP-CCGAIENVTRKCAWPS 92 (123)
Q Consensus 61 ~EI~~ffl~G~~-~iGp-CC~Ai~~i~~~C~WP~ 92 (123)
.|-++.+.-|+. ..|+ | =.++| |.+
T Consensus 9 ~~eL~~i~GG~yyGnGvyC------nk~kC-~vd 35 (64)
T 1ry3_A 9 VKEMKQLHGGVNYGNGVSC------SKTKC-SVN 35 (64)
T ss_dssp HHHHHTTSCCCSCTTSCCC------SSSCC-CCC
T ss_pred HHHHhhhcCCeeeCCcceE------CCcee-eec
Confidence 344556677766 6778 7 56789 875
Done!