Query 033274
Match_columns 123
No_of_seqs 76 out of 78
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 19:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033274.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033274hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 19.2 39 0.0029 20.8 2.8 33 49-86 4-38 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 10.7 62 0.0045 19.8 1.9 33 49-86 3-36 (91)
3 d1knya1 a.24.16.1 (A:126-253) 8.2 86 0.0062 21.3 2.0 27 56-82 76-106 (128)
4 d2q22a1 d.365.1.1 (A:8-138) Un 7.3 98 0.0071 20.7 1.9 42 62-106 34-83 (131)
5 d1jb0m_ f.23.19.1 (M:) Subunit 6.5 1.8E+02 0.013 15.1 2.3 17 1-17 1-17 (31)
6 d1k8rb_ d.15.1.5 (B:) Protein 5.5 96 0.007 19.9 1.0 17 53-69 14-30 (95)
7 d1p4oa_ d.144.1.7 (A:) Insulin 4.6 2.1E+02 0.015 19.6 2.5 32 60-92 241-274 (308)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 4.0 1.1E+02 0.0082 16.6 0.4 16 98-113 5-20 (52)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 4.0 1.2E+02 0.0085 16.3 0.4 16 98-113 3-18 (47)
10 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 3.9 2.3E+02 0.017 16.1 1.8 22 97-118 3-24 (59)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=19.20 E-value=39 Score=20.78 Aligned_cols=33 Identities=15% Similarity=0.580 Sum_probs=21.1
Q ss_pred hhhhhhcchhhHHHHHHHHHhCcc-cccc-chHHHHHhhh
Q 033274 49 CLKAYQELNKCLAVIYQFFFTGMT-NVGP-CCGAIENVTR 86 (123)
Q Consensus 49 CWssl~~l~~C~~EI~~ffl~G~~-~iGp-CC~Ai~~i~~ 86 (123)
|=..+.++-.|. .|++|.. .-.+ ||.+++.+.+
T Consensus 4 C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~ 38 (93)
T d1fk5a_ 4 CGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNN 38 (93)
T ss_dssp HHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHH
Confidence 444455555554 3567776 4455 9999998753
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=10.73 E-value=62 Score=19.77 Aligned_cols=33 Identities=18% Similarity=0.643 Sum_probs=21.2
Q ss_pred hhhhhhcchhhHHHHHHHHHhCcccccc-chHHHHHhhh
Q 033274 49 CLKAYQELNKCLAVIYQFFFTGMTNVGP-CCGAIENVTR 86 (123)
Q Consensus 49 CWssl~~l~~C~~EI~~ffl~G~~~iGp-CC~Ai~~i~~ 86 (123)
|=+.+..+-.|.. |++|.....+ ||.+++.+..
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~ 36 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHN 36 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHH
Confidence 4444555555643 5677666666 9999988753
No 3
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=8.23 E-value=86 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHhCcc-ccc---cchHHHH
Q 033274 56 LNKCLAVIYQFFFTGMT-NVG---PCCGAIE 82 (123)
Q Consensus 56 l~~C~~EI~~ffl~G~~-~iG---pCC~Ai~ 82 (123)
.++=+.|..++|.+|+- ..- .||.++-
T Consensus 76 ~p~g~d~l~~~vm~G~L~~~~~i~~~CE~~w 106 (128)
T d1knya1 76 LPSGYDHLCQFVMSGQLSDSEKLLESLENFW 106 (128)
T ss_dssp CCTTHHHHHHHHHHTBCCCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 45568899999999998 332 2888763
No 4
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=7.32 E-value=98 Score=20.66 Aligned_cols=42 Identities=5% Similarity=0.005 Sum_probs=26.4
Q ss_pred HHHHHHHhCcc-cccc---ch----HHHHHhhhcCCCCCCCCCCCCCCcchhh
Q 033274 62 VIYQFFFTGMT-NVGP---CC----GAIENVTRKCAWPSTLPWFGYTPQQSNI 106 (123)
Q Consensus 62 EI~~ffl~G~~-~iGp---CC----~Ai~~i~~~C~WP~M~~~~gFtp~e~~~ 106 (123)
|+..-+.+-.- .||- ++ .|++.+.++.+|+.++.. ++.++++
T Consensus 34 eL~~~~~~adw~tiGImA~s~~~Ai~ALrs~~~~~~~~~~~d~---~~~~G~V 83 (131)
T d2q22a1 34 ALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDL---PVVEGPV 83 (131)
T ss_dssp HHHHHHHTSSEEEEEEEESSHHHHHHHHHHHHHHTTCCCC-CC---CCCSSSE
T ss_pred HHHHHHHhCCcEEEEEecCCHHHHHHHHHHHHHHhCCCccCCC---CCCCCcE
Confidence 45555444443 5665 33 478889999999988664 5555553
No 5
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.50 E-value=1.8e+02 Score=15.13 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=8.6
Q ss_pred CcchHHHHHHHHHHHHH
Q 033274 1 MALKNLFLIILFLITSL 17 (123)
Q Consensus 1 Ma~~~~~l~~~~~~~~l 17 (123)
|+....-+.++++++++
T Consensus 1 m~lsdtqv~valvial~ 17 (31)
T d1jb0m_ 1 MALTDTQVYVALVIALL 17 (31)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 66445444555555444
No 6
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.55 E-value=96 Score=19.90 Aligned_cols=17 Identities=0% Similarity=-0.193 Sum_probs=13.5
Q ss_pred hhcchhhHHHHHHHHHh
Q 033274 53 YQELNKCLAVIYQFFFT 69 (123)
Q Consensus 53 l~~l~~C~~EI~~ffl~ 69 (123)
..++.||.+||+.-.|.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 67899999997776554
No 7
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.64 E-value=2.1e+02 Score=19.62 Aligned_cols=32 Identities=19% Similarity=0.463 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCcc-cccc-chHHHHHhhhcCCCCC
Q 033274 60 LAVIYQFFFTGMT-NVGP-CCGAIENVTRKCAWPS 92 (123)
Q Consensus 60 ~~EI~~ffl~G~~-~iGp-CC~Ai~~i~~~C~WP~ 92 (123)
..|++..+.+|+. .+-+ |-..+..+-.+| |-.
T Consensus 241 ~~~~~~~i~~~~~~~~p~~~~~~l~~li~~c-l~~ 274 (308)
T d1p4oa_ 241 NEQVLRFVMEGGLLDKPDNCPDMLFELMRMC-WQY 274 (308)
T ss_dssp HHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHhCCCCCCcccchHHHHHHHHHH-cCC
Confidence 4567777777776 5555 667788888888 753
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.00 E-value=1.1e+02 Score=16.62 Aligned_cols=16 Identities=13% Similarity=0.306 Sum_probs=12.8
Q ss_pred CCCCcchhhHHhhhhh
Q 033274 98 GYTPQQSNILLSYCRA 113 (123)
Q Consensus 98 gFtp~e~~~Lkg~C~~ 113 (123)
+||+||-..|+..-..
T Consensus 5 ~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 5 PWTKEEDQRLIKLVQK 20 (52)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999876544
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.98 E-value=1.2e+02 Score=16.30 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=12.5
Q ss_pred CCCCcchhhHHhhhhh
Q 033274 98 GYTPQQSNILLSYCRA 113 (123)
Q Consensus 98 gFtp~e~~~Lkg~C~~ 113 (123)
+||+||-.+|...-..
T Consensus 3 ~WT~eED~~L~~~v~~ 18 (47)
T d1gv2a2 3 SWTEEEDRIIYQAHKR 18 (47)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999988876544
No 10
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.87 E-value=2.3e+02 Score=16.09 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=15.7
Q ss_pred CCCCCcchhhHHhhhhhcCCCC
Q 033274 97 FGYTPQQSNILLSYCRAISPAP 118 (123)
Q Consensus 97 ~gFtp~e~~~Lkg~C~~~~pAp 118 (123)
.+||.+|-.+|-.|=..-.+.+
T Consensus 3 ~~fT~eeD~~l~~yv~~~~~~~ 24 (59)
T d1fexa_ 3 IAFTDADDVAILTYVKENARSP 24 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCST
T ss_pred CCCCHHHHHHHHHHHHHhccCc
Confidence 5799999888888776554433
Done!