BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033276
         (123 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN=NOB1 PE=2 SV=1
          Length = 411

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM IR+   YI+ +C   F +
Sbjct: 231 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYIL-RCHGCFKT 275


>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1
          Length = 412

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM IR+   YI+ +C   F +
Sbjct: 232 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYIL-RCHGCFKT 276


>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1 PE=2 SV=1
          Length = 413

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM IR+   YI+ +C   F +
Sbjct: 233 VGCVTTDFAMQNVLLQMGLHVLAVNGMLIREARSYIL-RCHGCFKT 277


>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1
          Length = 412

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM IR+   YI+ +C   F +
Sbjct: 232 VGCLTTDFAMQNVLLQMGLHVLAVNGMLIREARSYIL-RCHGCFKT 276


>sp|Q6VEU1|NOB1_RAT RNA-binding protein NOB1 OS=Rattus norvegicus GN=Nob1 PE=2 SV=1
          Length = 410

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM +R+   YI+ +C   F +
Sbjct: 230 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYIL-RCHGCFKT 274


>sp|Q8BW10|NOB1_MOUSE RNA-binding protein NOB1 OS=Mus musculus GN=Nob1 PE=1 SV=1
          Length = 403

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS 80
           V C+T D+AMQNV+LQMGL +LA  GM +R+   YI+ +C   F +
Sbjct: 223 VGCVTTDFAMQNVLLQMGLHVLAVNGMLVREARSYIL-RCHGCFKT 267


>sp|Q9UTK0|NOB1_SCHPO 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1
          Length = 388

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 29/37 (78%)

Query: 35  VACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIV 71
           VAC T D++MQNV+LQ+GL L++  G +I+ + R+++
Sbjct: 218 VACATTDFSMQNVLLQIGLNLVSSDGFKIQNVKRFVL 254


>sp|Q08444|NOB1_YEAST 20S-pre-rRNA D-site endonuclease NOB1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=NOB1 PE=1 SV=1
          Length = 459

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 32  ESTVACITGDYAMQNVILQMGLRLLA-PGGMQIRQLHRYIV--DKCLKLFSSP 81
           E+ VA  TGD+A+QNV LQM L L+    G++I+++  Y++    C K+F  P
Sbjct: 262 ENQVALATGDFAVQNVALQMNLNLMNFMSGLKIKRIRNYMLRCHACFKIFPLP 314


>sp|P53886|APC1_YEAST Anaphase-promoting complex subunit 1 OS=Saccharomyces cerevisiae
            (strain ATCC 204508 / S288c) GN=APC1 PE=1 SV=2
          Length = 1748

 Score = 35.8 bits (81), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 42   YAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSSP 81
            Y M   IL MG+R  + G ++IR +   +VDK L L+  P
Sbjct: 1330 YTMAGRILAMGIRFASTGNLKIRNILLSLVDKFLPLYQYP 1369


>sp|Q89AD8|GSH1_BUCBP Glutamate--cysteine ligase OS=Buchnera aphidicola subsp. Baizongia
           pistaciae (strain Bp) GN=gshA PE=3 SV=1
          Length = 521

 Score = 33.9 bits (76), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 14/91 (15%)

Query: 10  IVDVSYVDDECSE---QSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGGMQIRQL 66
           I++ +Y  D+        W+    SES +  IT   A  N IL+            +   
Sbjct: 39  IINTAYPQDKIGSALTHKWITTDFSESLLEFITPTNASTNYILKF-----------LNDT 87

Query: 67  HRYIVDKCLKLFSSPFPLVICIKSNHEIRIS 97
           H+++ D  ++ +  PF +  C K  H I++S
Sbjct: 88  HKFVNDNLIQEYFWPFSIPPCKKYMHSIKLS 118


>sp|P02920|LACY_ECOLI Lactose permease OS=Escherichia coli (strain K12) GN=lacY PE=1 SV=1
          Length = 417

 Score = 32.3 bits (72), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 70  IVDKCLKLFSSPFPLVICIK---SNHEIRISPVFMLILICLYIQV 111
           ++ K L +F  PF LV C K   S  E+R S    L+  C + Q+
Sbjct: 316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360


>sp|O21034|MP30_DICDI Uncharacterized mitochondrial protein 30 OS=Dictyostelium
           discoideum GN=DidioMp30 PE=4 SV=1
          Length = 188

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 62  QIRQLHRYIVDKCLKLFSSPFPLV----ICIKSNHEIRISPVFMLI-LICLYIQVDTEMP 116
           ++R L +Y+++KC+ L  S    +    + IK N+  +   V+ +I LI L+ Q+  E P
Sbjct: 8   KLRLLDKYVLNKCMSLNRSNTSTIALDHVNIKMNYRKKKKEVYQMIELITLFEQITGEKP 67

Query: 117 CL 118
            +
Sbjct: 68  LI 69


>sp|P47234|LACY_CITFR Lactose permease OS=Citrobacter freundii GN=lacY PE=3 SV=1
          Length = 416

 Score = 31.2 bits (69), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 70  IVDKCLKLFSSPFPLVICIK---SNHEIRISPVFMLILICLYIQV 111
           ++ K L +F  PF +V C K   S  E+R S    L+  C + Q+
Sbjct: 315 VILKTLHMFEIPFLIVGCFKYITSQFEVRFSATIYLVCFCFFKQL 359


>sp|Q1IEK2|QUEA_PSEE4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           OS=Pseudomonas entomophila (strain L48) GN=queA PE=3
           SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 19/113 (16%)

Query: 1   MEISSKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGG 60
           + + +   + V V  ++D    + W+   +S+  V  +    A        G R++A G 
Sbjct: 201 LHVGAGTFQPVRVDKIEDHTMHKEWL--EVSQDVVDAVAACRAR-------GGRVIAVGT 251

Query: 61  MQIRQLHRYIVDKCLKLFSS----------PFPLVICIKSNHEIRISPVFMLI 103
             +R L     D  LK FS           PF +V C+ +N  +  S + ML+
Sbjct: 252 TSVRSLESAARDGVLKAFSGDTDIFIFPGRPFHVVDCLVTNFHLPESTLLMLV 304


>sp|Q8EWM9|NANE_MYCPE Putative N-acetylmannosamine-6-phosphate 2-epimerase OS=Mycoplasma
           penetrans (strain HF-2) GN=nanE PE=3 SV=1
          Length = 230

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 59  GGMQIRQLHRYIVDKCLKLFSSPFPLVICIKSNH---EIRISPVFMLILICLYIQVD 112
           GG ++ +L +Y   K +K  S   P++  IKSN+   E+ I+P    + + L + VD
Sbjct: 41  GGAKVLRLSQYSHIKSIKSISGKTPIIGLIKSNYENSEVIITPSIKEVDLLLSLNVD 97


>sp|P57674|VAPC1_THEAC Putative ribonuclease VapC1 OS=Thermoplasma acidophilum (strain
           ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
           AMRC-C165) GN=vapC1 PE=3 SV=1
          Length = 194

 Score = 29.3 bits (64), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 2   EISSKNNEIVDVSYVDDECSEQSWMLRSLSESTVACITGDYAMQNVILQMGLRLLAPGGM 61
           E ++K  +++++S  D +      +L    +     +T DY++QNV   + L  L     
Sbjct: 94  ETAAKTGDLMNLSQTDKD------VLALALQYDATIVTDDYSIQNVASYLNLGFLNANIK 147

Query: 62  QIRQLHRYIV--DKCLKLFSSPFPLVICIKSNHEIR 95
           +I +   +I     C K+F  P P+ +C    HE++
Sbjct: 148 RIDKQIAWIYRCTGCKKVF--PGPVKVCDICGHEVK 181


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.140    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,128,556
Number of Sequences: 539616
Number of extensions: 1526141
Number of successful extensions: 4541
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4529
Number of HSP's gapped (non-prelim): 18
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)