Query 033276
Match_columns 123
No_of_seqs 101 out of 282
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2con_A RUH-035 protein, NIN on 99.7 1.5E-18 5.3E-23 119.6 3.3 46 57-104 2-49 (79)
2 2lcq_A Putative toxin VAPC6; P 99.7 3.6E-17 1.2E-21 121.1 4.0 59 33-93 96-157 (165)
3 2kdx_A HYPA, hydrogenase/ureas 96.1 0.0033 1.1E-07 44.3 2.7 40 67-111 70-113 (119)
4 3a43_A HYPD, hydrogenase nicke 96.1 0.0038 1.3E-07 45.5 3.1 39 68-111 68-130 (139)
5 3i8o_A KH domain-containing pr 95.5 0.0092 3.2E-07 44.3 3.2 29 32-60 104-132 (142)
6 3irb_A Uncharacterized protein 95.0 0.0071 2.4E-07 44.2 1.3 34 67-102 44-78 (145)
7 2gnr_A Conserved hypothetical 94.1 0.016 5.6E-07 42.5 1.3 33 68-102 45-78 (145)
8 3ix7_A Uncharacterized protein 93.8 0.025 8.6E-07 41.3 2.0 28 32-59 96-123 (134)
9 1twf_L ABC10-alpha, DNA-direct 92.5 0.043 1.5E-06 36.3 1.4 27 67-94 25-55 (70)
10 4ayb_P DNA-directed RNA polyme 91.5 0.092 3.1E-06 33.0 1.9 28 70-99 3-37 (48)
11 2aus_D NOP10, ribosome biogene 90.8 0.1 3.5E-06 33.9 1.7 21 73-94 7-27 (60)
12 2apo_B Ribosome biogenesis pro 90.8 0.098 3.3E-06 34.0 1.6 20 73-93 8-27 (60)
13 3h0g_L DNA-directed RNA polyme 90.2 0.14 4.8E-06 33.5 2.0 25 69-94 20-48 (63)
14 1lko_A Rubrerythrin all-iron(I 88.2 0.33 1.1E-05 36.5 3.1 23 70-93 155-180 (191)
15 3pwf_A Rubrerythrin; non heme 88.1 0.23 7.8E-06 37.1 2.1 22 70-93 138-162 (170)
16 6rxn_A Rubredoxin; electron tr 87.9 0.2 7E-06 30.7 1.4 22 71-93 5-39 (46)
17 1gh9_A 8.3 kDa protein (gene M 85.5 0.1 3.5E-06 34.7 -1.0 28 70-100 4-36 (71)
18 3j21_g 50S ribosomal protein L 85.0 0.62 2.1E-05 29.2 2.6 27 70-98 14-41 (51)
19 4rxn_A Rubredoxin; electron tr 84.8 0.4 1.4E-05 30.2 1.6 22 71-93 4-45 (54)
20 3na7_A HP0958; flagellar bioge 83.6 0.43 1.5E-05 37.1 1.7 21 73-93 200-231 (256)
21 2jrp_A Putative cytoplasmic pr 81.1 0.54 1.8E-05 32.1 1.2 21 73-94 20-41 (81)
22 1yuz_A Nigerythrin; rubrythrin 80.6 0.79 2.7E-05 34.9 2.2 23 70-93 171-195 (202)
23 2v3b_B Rubredoxin 2, rubredoxi 79.0 0.92 3.1E-05 28.5 1.7 23 70-93 3-45 (55)
24 1h7b_A Anaerobic ribonucleotid 77.4 0.42 1.4E-05 42.3 -0.3 23 71-93 540-567 (605)
25 2zjr_Z 50S ribosomal protein L 77.1 0.93 3.2E-05 29.0 1.3 20 73-92 32-51 (60)
26 2dok_A Telomerase-binding prot 76.9 1.6 5.5E-05 32.0 2.8 26 33-58 151-176 (186)
27 1dx8_A Rubredoxin; electron tr 76.1 1.2 4E-05 29.3 1.6 23 70-93 7-49 (70)
28 3v2d_5 50S ribosomal protein L 75.3 1.1 3.7E-05 28.7 1.3 20 73-92 32-51 (60)
29 2kn9_A Rubredoxin; metalloprot 74.9 1.3 4.5E-05 30.1 1.7 23 70-93 27-69 (81)
30 3cng_A Nudix hydrolase; struct 74.7 1.1 3.9E-05 32.0 1.4 13 84-96 3-15 (189)
31 1e8j_A Rubredoxin; iron-sulfur 74.0 1.8 6.1E-05 26.8 2.0 22 71-93 4-45 (52)
32 1yk4_A Rubredoxin, RD; electro 73.7 1.4 4.9E-05 27.3 1.5 23 70-93 2-44 (52)
33 2jny_A Uncharacterized BCR; st 71.9 2 6.7E-05 28.0 1.9 23 70-93 10-37 (67)
34 1qxf_A GR2, 30S ribosomal prot 71.6 1.7 5.8E-05 28.7 1.6 21 73-93 9-35 (66)
35 3j20_Y 30S ribosomal protein S 69.9 1.6 5.4E-05 26.8 1.1 21 73-93 21-46 (50)
36 3p8b_A DNA-directed RNA polyme 69.7 2.1 7.2E-05 29.2 1.8 20 73-93 25-44 (81)
37 3m7n_A Putative uncharacterize 68.9 1.5 5.1E-05 32.5 0.9 32 67-100 137-171 (179)
38 2gmg_A Hypothetical protein PF 68.8 3.8 0.00013 29.1 3.0 33 64-98 61-97 (105)
39 2fiy_A Protein FDHE homolog; F 67.8 2.3 7.9E-05 34.6 1.9 21 73-93 210-231 (309)
40 3h0g_I DNA-directed RNA polyme 67.5 1.8 6.1E-05 30.2 1.1 14 84-97 4-17 (113)
41 1s24_A Rubredoxin 2; electron 67.0 2.3 7.9E-05 29.2 1.5 23 70-93 35-77 (87)
42 1o4w_A PIN (PILT N-terminus) d 67.0 5.7 0.0002 27.6 3.7 30 34-63 111-140 (147)
43 3u50_C Telomerase-associated p 65.7 3.6 0.00012 31.0 2.5 26 68-93 39-68 (172)
44 3j20_W 30S ribosomal protein S 64.9 2.9 9.9E-05 27.3 1.6 21 73-93 17-43 (63)
45 3qt1_I DNA-directed RNA polyme 63.5 2.4 8.3E-05 30.7 1.2 21 73-93 26-55 (133)
46 2k4x_A 30S ribosomal protein S 62.4 3.9 0.00013 25.5 1.8 21 73-93 20-45 (55)
47 2kwq_A Protein MCM10 homolog; 60.8 5.5 0.00019 27.5 2.5 37 62-102 41-82 (92)
48 1twf_I B12.6, DNA-directed RNA 60.4 4.4 0.00015 28.5 2.0 9 85-93 27-35 (122)
49 1ryq_A DNA-directed RNA polyme 59.7 4.7 0.00016 26.7 1.9 20 73-93 13-32 (69)
50 3axs_A Probable N(2),N(2)-dime 59.6 5.3 0.00018 33.1 2.7 26 68-94 242-273 (392)
51 2ayj_A 50S ribosomal protein L 59.2 3.8 0.00013 26.2 1.4 27 70-98 19-46 (56)
52 2k2d_A Ring finger and CHY zin 59.0 7.9 0.00027 25.7 3.0 28 66-95 34-66 (79)
53 1pft_A TFIIB, PFTFIIBN; N-term 58.6 3.8 0.00013 24.2 1.2 22 71-93 6-33 (50)
54 1ffk_W Ribosomal protein L37AE 58.2 7.3 0.00025 25.8 2.7 20 83-103 26-45 (73)
55 3u5c_b RP61, YS20, 40S ribosom 57.8 4.9 0.00017 27.5 1.8 22 73-94 36-63 (82)
56 2xzm_6 RPS27E; ribosome, trans 57.3 4.6 0.00016 27.5 1.6 22 72-93 33-60 (81)
57 3lpe_B DNA-directed RNA polyme 57.1 4.6 0.00016 25.7 1.5 19 73-93 3-22 (59)
58 3eqt_A ATP-dependent RNA helic 56.3 6.1 0.00021 29.3 2.3 27 82-119 67-94 (145)
59 1ltl_A DNA replication initiat 55.5 7.2 0.00025 30.4 2.7 40 65-109 129-177 (279)
60 3j21_i 50S ribosomal protein L 54.7 5.8 0.0002 27.0 1.8 18 83-101 34-51 (83)
61 3iz6_X 40S ribosomal protein S 54.5 5.7 0.00019 27.4 1.7 21 73-93 38-64 (86)
62 1k81_A EIF-2-beta, probable tr 54.0 2.6 8.8E-05 24.2 -0.1 21 59-80 10-30 (36)
63 1l8d_A DNA double-strand break 53.7 3.2 0.00011 27.9 0.3 11 84-94 47-57 (112)
64 3f2b_A DNA-directed DNA polyme 53.4 7 0.00024 36.9 2.6 23 70-93 502-536 (1041)
65 1tfi_A Transcriptional elongat 53.1 8.9 0.0003 23.3 2.3 10 84-93 9-18 (50)
66 2k1p_A Zinc finger RAN-binding 53.0 8.7 0.0003 21.4 2.1 21 73-93 8-29 (33)
67 3v2d_6 50S ribosomal protein L 52.7 3.8 0.00013 25.7 0.5 29 68-98 8-50 (54)
68 1qyp_A RNA polymerase II; tran 52.2 11 0.00036 22.9 2.6 9 85-93 16-24 (57)
69 1vk6_A NADH pyrophosphatase; 1 52.2 12 0.00042 29.1 3.5 28 73-101 109-141 (269)
70 1vq8_Z 50S ribosomal protein L 49.6 6.3 0.00022 26.5 1.3 23 70-93 27-54 (83)
71 1dl6_A Transcription factor II 49.5 6.8 0.00023 24.3 1.4 21 73-93 13-39 (58)
72 1vq8_1 50S ribosomal protein L 49.1 5.9 0.0002 25.4 1.0 25 67-93 15-42 (57)
73 3j21_j 50S ribosomal protein L 48.8 6.9 0.00024 27.2 1.4 16 84-100 8-23 (94)
74 2zjr_1 50S ribosomal protein L 48.4 6.4 0.00022 24.7 1.1 29 68-98 9-51 (55)
75 3ga3_A Interferon-induced heli 47.4 10 0.00035 27.7 2.2 26 82-119 65-91 (133)
76 1vq8_3 50S ribosomal protein L 47.3 6.5 0.00022 27.3 1.1 16 84-100 8-23 (92)
77 3jyw_9 60S ribosomal protein L 46.9 3.2 0.00011 27.6 -0.5 16 84-100 26-41 (72)
78 2ftc_P Mitochondrial ribosomal 46.5 7.1 0.00024 24.1 1.1 29 68-98 9-49 (52)
79 2hf1_A Tetraacyldisaccharide-1 46.3 12 0.0004 24.2 2.2 23 70-93 8-35 (68)
80 3r8s_1 50S ribosomal protein L 46.2 5.5 0.00019 24.5 0.5 28 69-98 6-47 (50)
81 2lk0_A RNA-binding protein 5; 45.9 9.6 0.00033 21.1 1.5 21 73-93 7-28 (32)
82 3flo_B DNA polymerase alpha ca 45.7 8 0.00027 29.8 1.5 34 59-93 11-58 (206)
83 3bbo_3 Ribosomal protein L33; 45.3 6.2 0.00021 25.7 0.7 14 84-98 49-62 (66)
84 3iz5_m 60S ribosomal protein L 45.3 7.4 0.00025 27.0 1.1 18 83-101 35-52 (92)
85 1ma3_A SIR2-AF2, transcription 43.9 9 0.00031 29.6 1.5 24 68-92 121-155 (253)
86 2jr6_A UPF0434 protein NMA0874 43.8 12 0.00041 24.2 1.9 21 73-93 10-35 (68)
87 3fac_A Putative uncharacterize 43.6 7.4 0.00025 26.4 0.9 13 82-94 65-77 (118)
88 3bvo_A CO-chaperone protein HS 42.8 11 0.00039 28.5 2.0 20 73-92 12-35 (207)
89 2akl_A PHNA-like protein PA012 42.6 7.5 0.00026 28.9 0.9 22 72-93 28-53 (138)
90 3cc2_Z 50S ribosomal protein L 42.6 9.2 0.00031 27.6 1.3 18 83-101 59-76 (116)
91 1yc5_A NAD-dependent deacetyla 42.5 8.5 0.00029 29.5 1.2 25 68-93 119-154 (246)
92 4a18_C 60S ribosomal protein L 42.4 8.5 0.00029 27.5 1.1 16 84-100 9-24 (109)
93 1q1a_A HST2 protein; ternary c 42.3 9.3 0.00032 30.1 1.4 32 55-93 127-172 (289)
94 2js4_A UPF0434 protein BB2007; 42.3 13 0.00044 24.2 1.9 22 71-93 9-35 (70)
95 3f6q_B LIM and senescent cell 41.3 7.7 0.00026 23.1 0.6 27 87-122 42-68 (72)
96 3j21_e 50S ribosomal protein L 41.3 11 0.00036 24.6 1.3 21 73-93 19-42 (62)
97 4a17_Y RPL37A, 60S ribosomal p 41.1 9.8 0.00034 26.9 1.2 18 83-101 35-52 (103)
98 2jrr_A Uncharacterized protein 40.9 8.9 0.0003 25.1 0.9 26 83-122 39-64 (67)
99 3o9x_A Uncharacterized HTH-typ 40.8 19 0.00065 24.1 2.7 9 85-93 3-11 (133)
100 3izc_m 60S ribosomal protein R 40.5 9.4 0.00032 26.5 1.0 18 83-101 35-52 (92)
101 2a6h_D DNA-directed RNA polyme 40.5 6.5 0.00022 38.6 0.3 30 66-99 53-85 (1524)
102 2dj7_A Actin-binding LIM prote 40.2 9.8 0.00034 24.0 1.0 27 86-122 44-70 (80)
103 3u31_A SIR2A, transcriptional 40.0 11 0.00037 30.2 1.5 34 68-105 152-200 (290)
104 2rgt_A Fusion of LIM/homeobox 39.8 9.6 0.00033 27.1 1.1 29 87-122 96-124 (169)
105 3ir9_A Peptide chain release f 39.5 18 0.00062 26.5 2.6 28 66-94 74-113 (166)
106 2pk7_A Uncharacterized protein 39.2 13 0.00045 24.0 1.6 21 73-93 10-35 (69)
107 1m2k_A Silent information regu 38.2 11 0.00039 28.9 1.3 25 68-93 119-151 (249)
108 2l3k_A Rhombotin-2, linker, LI 38.1 17 0.00059 24.5 2.1 28 87-122 39-66 (123)
109 2jne_A Hypothetical protein YF 37.8 12 0.00042 26.4 1.3 22 73-94 50-71 (101)
110 1z60_A TFIIH basal transcripti 37.8 10 0.00035 24.1 0.8 21 73-93 17-39 (59)
111 1g47_A Pinch protein; LIM doma 36.5 8.2 0.00028 23.6 0.2 28 86-122 41-68 (77)
112 1q14_A HST2 protein; histone d 36.4 10 0.00035 31.3 0.8 25 68-93 142-180 (361)
113 3nw0_A Non-structural maintena 36.3 9.8 0.00034 29.5 0.7 21 73-93 182-202 (238)
114 2jtn_A LIM domain-binding prot 36.2 12 0.00042 26.9 1.2 19 104-122 160-178 (182)
115 1x6m_A GFA, glutathione-depend 36.1 10 0.00035 28.2 0.7 13 82-94 96-108 (196)
116 1nkw_1 50S ribosomal protein L 35.9 13 0.00044 25.3 1.2 29 68-98 36-78 (82)
117 1x3h_A Leupaxin; paxillin fami 35.4 7.5 0.00026 24.0 -0.1 15 108-122 56-70 (80)
118 3lrr_A Probable ATP-dependent 34.5 22 0.00077 25.4 2.3 27 82-119 57-86 (121)
119 3iz5_l 60S ribosomal protein L 34.4 12 0.00042 26.1 0.8 26 67-94 14-41 (94)
120 4gop_C Putative uncharacterize 34.3 29 0.00098 28.5 3.2 25 69-93 306-336 (444)
121 2qfd_A Probable ATP-dependent 34.1 22 0.00074 26.3 2.2 27 82-119 79-108 (145)
122 4a18_A RPL37, ribosomal protei 33.1 12 0.00041 26.2 0.6 26 66-93 13-40 (94)
123 3ga8_A HTH-type transcriptiona 32.3 49 0.0017 20.9 3.5 9 85-93 3-11 (78)
124 2ct7_A Ring finger protein 31; 32.3 25 0.00085 22.8 2.1 21 73-93 27-52 (86)
125 1x63_A Skeletal muscle LIM-pro 32.0 22 0.00075 21.9 1.7 14 108-121 58-71 (82)
126 2zkr_2 60S ribosomal protein L 31.6 18 0.00063 25.3 1.4 25 67-93 14-40 (97)
127 1wfp_A Zinc finger (AN1-like) 31.4 12 0.00043 25.0 0.5 27 65-93 20-47 (74)
128 1nj3_A NPL4; NZF domain, rubre 31.3 28 0.00097 18.6 1.9 21 73-93 8-29 (31)
129 1wyh_A SLIM 2, skeletal muscle 31.1 16 0.00054 21.9 0.9 28 86-122 35-62 (72)
130 2a20_A Regulating synaptic mem 30.7 11 0.00036 24.7 0.0 25 73-97 11-46 (62)
131 1wg2_A Zinc finger (AN1-like) 30.7 22 0.00075 23.1 1.6 23 69-93 14-37 (64)
132 1a7i_A QCRP2 (LIM1); LIM domai 30.2 16 0.00056 22.6 0.9 27 87-122 37-63 (81)
133 2f9y_B Acetyl-coenzyme A carbo 29.6 23 0.0008 28.3 1.9 25 68-94 23-53 (304)
134 1wfh_A Zinc finger (AN1-like) 29.2 25 0.00084 22.9 1.6 24 68-93 13-37 (64)
135 3lcz_A YCZA, inhibitor of trap 28.4 28 0.00096 21.3 1.7 23 73-95 11-34 (53)
136 3glr_A NAD-dependent deacetyla 28.0 18 0.00062 28.9 1.0 35 68-105 137-182 (285)
137 2co8_A NEDD9 interacting prote 27.7 20 0.00067 22.6 0.9 29 86-122 44-73 (82)
138 2nn6_I 3'-5' exoribonuclease C 27.5 19 0.00065 27.3 1.0 29 73-103 171-203 (209)
139 3vk6_A E3 ubiquitin-protein li 27.5 6.1 0.00021 27.9 -1.7 35 73-109 24-60 (101)
140 2dmj_A Poly (ADP-ribose) polym 26.8 20 0.0007 24.5 0.9 41 81-123 22-63 (106)
141 2c6a_A Ubiquitin-protein ligas 26.6 28 0.00095 21.4 1.4 19 73-91 15-34 (46)
142 3qqc_A DNA-directed RNA polyme 26.4 54 0.0018 27.7 3.6 32 69-101 4-40 (436)
143 2kpi_A Uncharacterized protein 25.8 36 0.0012 20.9 1.9 21 73-93 12-37 (56)
144 4esj_A Type-2 restriction enzy 24.8 24 0.00081 28.6 1.1 13 84-97 34-46 (257)
145 1n0z_A ZNF265; zinc finger, RN 24.7 44 0.0015 19.7 2.1 21 73-93 16-39 (45)
146 3po3_S Transcription elongatio 24.7 24 0.00084 26.3 1.1 9 85-93 138-146 (178)
147 1l1o_C Replication protein A 7 23.6 82 0.0028 22.9 3.8 25 69-93 41-71 (181)
148 1iym_A EL5; ring-H2 finger, ub 23.6 22 0.00076 20.0 0.5 21 74-94 32-53 (55)
149 2ko5_A Ring finger protein Z; 23.6 10 0.00034 26.8 -1.2 20 74-93 50-70 (99)
150 2egq_A FHL1 protein; LIM domai 23.1 67 0.0023 19.3 2.8 14 108-121 61-74 (77)
151 4a2v_A RIG-I, retinoic acid in 22.5 49 0.0017 24.0 2.3 28 82-120 59-90 (131)
152 2e9h_A EIF-5, eukaryotic trans 22.2 27 0.00094 26.0 0.9 12 67-80 101-112 (157)
153 2cur_A Skeletal muscle LIM-pro 22.2 25 0.00085 21.0 0.6 26 87-121 34-59 (69)
154 2cr8_A MDM4 protein; ZF-ranbp 22.2 40 0.0014 21.3 1.5 19 73-91 13-32 (53)
155 1nee_A EIF-2-beta, probable tr 22.0 21 0.00073 25.9 0.3 28 66-95 99-134 (138)
156 1weo_A Cellulose synthase, cat 21.8 14 0.00047 25.8 -0.8 21 73-93 45-67 (93)
157 1wff_A Riken cDNA 2810002D23 p 21.8 46 0.0016 22.6 1.9 25 67-93 22-48 (85)
158 2d74_B Translation initiation 21.7 23 0.00079 26.1 0.4 27 66-94 101-135 (148)
159 1k3x_A Endonuclease VIII; hydr 21.5 41 0.0014 26.1 1.8 10 85-94 235-244 (262)
160 1chl_A Chlorotoxin; neurotoxin 21.1 16 0.00055 21.5 -0.4 21 73-93 1-23 (36)
161 1wfl_A Zinc finger protein 216 21.1 39 0.0013 22.5 1.4 23 69-93 24-47 (74)
162 2ecy_A TNF receptor-associated 21.1 9.3 0.00032 22.7 -1.6 22 74-95 38-61 (66)
163 1g25_A CDK-activating kinase a 21.1 14 0.00046 21.9 -0.8 15 84-98 43-57 (65)
164 3r8s_0 50S ribosomal protein L 21.0 33 0.0011 21.2 1.0 17 73-89 29-45 (56)
165 2cu8_A Cysteine-rich protein 2 20.7 32 0.0011 20.9 0.9 26 87-121 39-65 (76)
166 1sf8_A Chaperone protein HTPG; 20.5 1.3E+02 0.0044 21.2 4.2 25 30-54 34-62 (126)
167 3h7h_A Transcription elongatio 20.5 14 0.00049 26.5 -0.9 20 73-92 18-41 (120)
168 2f2e_A PA1607; transcription f 20.5 58 0.002 22.5 2.3 29 73-101 115-143 (146)
169 2xqn_T Testin, TESS; metal-bin 20.3 53 0.0018 21.7 2.0 14 108-121 45-58 (126)
170 3iz5_r 60S ribosomal protein L 20.2 53 0.0018 23.1 2.0 16 84-100 9-26 (105)
171 3p2a_A Thioredoxin 2, putative 20.1 57 0.002 21.4 2.1 24 70-94 5-35 (148)
172 2bx9_A Anti-trap, AT, tryptoph 20.0 51 0.0017 20.1 1.7 24 73-96 11-35 (53)
No 1
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=99.72 E-value=1.5e-18 Score=119.60 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=43.1
Q ss_pred CCCCCcceeeeEEeeccccCCccc--ccCccccccCCCCCeeeEEEEEee
Q 033276 57 APGGMQIRQLHRYIVDKCLKLFSS--PFPLVICIKSNHEIRISPVFMLIL 104 (123)
Q Consensus 57 sv~g~~I~~v~~wvl~rC~gC~k~--~~~~~fCp~CG~~~tl~rV~~~~~ 104 (123)
|++|++|+++|+|++ ||+|||++ ++++.|||+|||+ ||+||+|++.
T Consensus 2 s~~G~~Ir~~k~~iL-rC~aCf~~t~~~~k~FCp~CGn~-TL~Rvsvsvd 49 (79)
T 2con_A 2 SSGSSGVREARSYIL-RCHGCFKTTSDMNRVFCGHCGNK-TLKKVSVTIN 49 (79)
T ss_dssp CCCCCCCCCCCCEEE-ECSSSCCEESCSSCCSCSSSCCS-CCEEEECBCC
T ss_pred CCCceEeeeeeeeee-EecccceECCCcccccccccCcc-cceEEEEEEC
Confidence 689999999999999 99999998 8899999999999 9999998653
No 2
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=99.66 E-value=3.6e-17 Score=121.15 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=54.1
Q ss_pred ceeEEecccHHHHHHHHHhCceeeCCCCCcceeeeEEeeccccCCccc-c--cCccccccCCCC
Q 033276 33 STVACITGDYAMQNVILQMGLRLLAPGGMQIRQLHRYIVDKCLKLFSS-P--FPLVICIKSNHE 93 (123)
Q Consensus 33 ~~va~vTdDyAmQNVllqlGL~l~sv~g~~I~~v~~wvl~rC~gC~k~-~--~~~~fCp~CG~~ 93 (123)
..+.++|+||++||||+++||+++++. .+|++++.|.| +|.+|++. + .+..|||.||++
T Consensus 96 l~~~lvT~D~~l~~vA~~~Gv~v~~~~-~~i~~~~~~~y-~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 96 LKGEIFSDDYNVQNIASLLGLRFRTLK-RGIKKVIKWRY-VCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp HTCCEECCCHHHHHHHHHTTCCEECCS-CCCSSCCCCCE-EESSSCCEESSCCGGGBCTTTCCB
T ss_pred hCCeEEcCcHHHHHHHHHCCCeEEchh-hhccccccEEE-ECCCCCCcccCCCCCCcCCCCCCc
Confidence 356899999999999999999999998 99999999999 99999997 3 346799999999
No 3
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=96.06 E-value=0.0033 Score=44.26 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=29.0
Q ss_pred eEEeeccccCCccc---ccCcc-ccccCCCCCeeeEEEEEeeEEEEEee
Q 033276 67 HRYIVDKCLKLFSS---PFPLV-ICIKSNHEIRISPVFMLILICLYIQV 111 (123)
Q Consensus 67 ~~wvl~rC~gC~k~---~~~~~-fCp~CG~~~tl~rV~~~~~~~~~~~~ 111 (123)
..=.+ +|..|++. +.... .||.||++ .++ ++-|.-+||++
T Consensus 70 ~p~~~-~C~~CG~~~e~~~~~~~~CP~Cgs~-~~~---i~~G~el~i~~ 113 (119)
T 2kdx_A 70 EKVEL-ECKDCSHVFKPNALDYGVCEKCHSK-NVI---ITQGNEMRLLS 113 (119)
T ss_dssp ECCEE-ECSSSSCEECSCCSTTCCCSSSSSC-CCE---EEESSCCEEEE
T ss_pred ccceE-EcCCCCCEEeCCCCCCCcCccccCC-CcE---EecCCeEEEEE
Confidence 34467 99999987 33445 79999999 443 56688888874
No 4
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=96.06 E-value=0.0038 Score=45.52 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=28.8
Q ss_pred EEeeccccCCccc---cc-----------C----------ccccccCCCCCeeeEEEEEeeEEEEEee
Q 033276 68 RYIVDKCLKLFSS---PF-----------P----------LVICIKSNHEIRISPVFMLILICLYIQV 111 (123)
Q Consensus 68 ~wvl~rC~gC~k~---~~-----------~----------~~fCp~CG~~~tl~rV~~~~~~~~~~~~ 111 (123)
.=+. +|..|+.. .. . ...||.||++ . +.++-|.-+||++
T Consensus 68 p~~~-~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~-~---~~i~~G~el~I~~ 130 (139)
T 3a43_A 68 EAVF-KCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH-D---FEVVKGRGVYVAG 130 (139)
T ss_dssp CCEE-EETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC-C---EEEEESSCEEEEE
T ss_pred CCcE-ECCCCCCEEecccccccccccccccccccccccccCCcCccccCC-c---cEEecCCeEEEEE
Confidence 3356 89999987 23 3 4669999999 3 4467788888875
No 5
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=95.49 E-value=0.0092 Score=44.28 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=26.0
Q ss_pred CceeEEecccHHHHHHHHHhCceeeCCCC
Q 033276 32 ESTVACITGDYAMQNVILQMGLRLLAPGG 60 (123)
Q Consensus 32 ~~~va~vTdDyAmQNVllqlGL~l~sv~g 60 (123)
...+.++|+||.+++||..+|++++.+..
T Consensus 104 ~~~a~lvTnD~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 104 ETNSILLTSDWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEECCC
T ss_pred HhCCEEEcCCHHHHHHHHHcCCEEEEecc
Confidence 35679999999999999999999999865
No 6
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.0071 Score=44.22 Aligned_cols=34 Identities=15% Similarity=-0.123 Sum_probs=26.8
Q ss_pred eEEeeccccCCccc-ccCccccccCCCCCeeeEEEEE
Q 033276 67 HRYIVDKCLKLFSS-PFPLVICIKSNHEIRISPVFML 102 (123)
Q Consensus 67 ~~wvl~rC~gC~k~-~~~~~fCp~CG~~~tl~rV~~~ 102 (123)
+-... ||..|++. -+++.+||.||+. .+..+.++
T Consensus 44 rL~~~-rC~~CG~~~~PPr~~Cp~C~s~-~~~~ve~s 78 (145)
T 3irb_A 44 KIIGS-KCSKCGRIFVPARSYCEHCFVK-IENYVEIN 78 (145)
T ss_dssp CCEEE-ECTTTCCEEESCCSEETTTTEE-CCEEEECC
T ss_pred eEEEE-EeCCCCcEEcCchhhCcCCCCC-ceeeeeec
Confidence 34556 99999999 6778999999998 66666544
No 7
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=94.05 E-value=0.016 Score=42.54 Aligned_cols=33 Identities=15% Similarity=-0.133 Sum_probs=26.1
Q ss_pred EEeeccccCCccc-ccCccccccCCCCCeeeEEEEE
Q 033276 68 RYIVDKCLKLFSS-PFPLVICIKSNHEIRISPVFML 102 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~~~~fCp~CG~~~tl~rV~~~ 102 (123)
-... ||..|++. .+++.+||.||+. .+..+.+.
T Consensus 45 L~~~-rC~~CG~~~fPPr~~Cp~C~s~-~~e~v~ls 78 (145)
T 2gnr_A 45 IIGS-KCSKCGRIFVPARSYCEHCFVK-IENYVEIN 78 (145)
T ss_dssp CEEE-ECTTTCCEEESCCSEETTTTEE-CCEEEECC
T ss_pred EEEE-EECCCCcEEeCCCCCCCCCCCC-ccEEEEcc
Confidence 4456 99999999 6778999999998 56666544
No 8
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=93.81 E-value=0.025 Score=41.33 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=24.7
Q ss_pred CceeEEecccHHHHHHHHHhCceeeCCC
Q 033276 32 ESTVACITGDYAMQNVILQMGLRLLAPG 59 (123)
Q Consensus 32 ~~~va~vTdDyAmQNVllqlGL~l~sv~ 59 (123)
+..+.++|.||.++++|..+|++++.++
T Consensus 96 ~~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 96 DLEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HTTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred HhCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 3468999999999999999999998763
No 9
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=92.49 E-value=0.043 Score=36.33 Aligned_cols=27 Identities=22% Similarity=0.248 Sum_probs=21.6
Q ss_pred eEEeeccccCCccc----ccCccccccCCCCC
Q 033276 67 HRYIVDKCLKLFSS----PFPLVICIKSNHEI 94 (123)
Q Consensus 67 ~~wvl~rC~gC~k~----~~~~~fCp~CG~~~ 94 (123)
....| +|..|+.. +.....||.||+.+
T Consensus 25 ~~v~Y-~C~~CG~~~e~~~~d~irCp~CG~RI 55 (70)
T 1twf_L 25 ATLKY-ICAECSSKLSLSRTDAVRCKDCGHRI 55 (70)
T ss_dssp CCCCE-ECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred ceEEE-ECCCCCCcceeCCCCCccCCCCCceE
Confidence 46788 99999986 34457899999973
No 10
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=91.47 E-value=0.092 Score=33.00 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=19.6
Q ss_pred eeccccCCccc-c------cCccccccCCCCCeeeEE
Q 033276 70 IVDKCLKLFSS-P------FPLVICIKSNHEIRISPV 99 (123)
Q Consensus 70 vl~rC~gC~k~-~------~~~~fCp~CG~~~tl~rV 99 (123)
+| +|.-|++. . .+..-||.||.+ .+.+|
T Consensus 3 iY-~C~rCg~~fs~~el~~lP~IrCpyCGyr-ii~Kv 37 (48)
T 4ayb_P 3 VY-RCGKCWKTFTDEQLKVLPGVRCPYCGYK-IIFMV 37 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCCS-CEECC
T ss_pred EE-EeeccCCCccHHHHhhCCCcccCccCcE-EEEEe
Confidence 46 89999987 1 456789999999 44443
No 11
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=90.78 E-value=0.1 Score=33.91 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.5
Q ss_pred cccCCcccccCccccccCCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHEI 94 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~~ 94 (123)
+|..|+.... +..||.||.++
T Consensus 7 ~C~~Cg~YTL-k~~CP~CG~~t 27 (60)
T 2aus_D 7 KCPKCGRYTL-KETCPVCGEKT 27 (60)
T ss_dssp ECTTTCCEES-SSBCTTTCSBC
T ss_pred ECCCCCCEEc-cccCcCCCCcc
Confidence 8999998733 68899999993
No 12
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=90.77 E-value=0.098 Score=33.97 Aligned_cols=20 Identities=30% Similarity=0.354 Sum_probs=17.1
Q ss_pred cccCCcccccCccccccCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~ 93 (123)
+|..|+.... +..||.||.+
T Consensus 8 ~C~~CgvYTL-k~~CP~CG~~ 27 (60)
T 2apo_B 8 KCPKCGLYTL-KEICPKCGEK 27 (60)
T ss_dssp ECTTTCCEES-SSBCSSSCSB
T ss_pred eCCCCCCEec-cccCcCCCCc
Confidence 8999997744 6889999999
No 13
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.18 E-value=0.14 Score=33.49 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=19.8
Q ss_pred EeeccccCCccc-c---cCccccccCCCCC
Q 033276 69 YIVDKCLKLFSS-P---FPLVICIKSNHEI 94 (123)
Q Consensus 69 wvl~rC~gC~k~-~---~~~~fCp~CG~~~ 94 (123)
-.| +|..|++. + ....-||.||+.+
T Consensus 20 v~Y-~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIY-LCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCC-BCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred eEE-ECCCCCCeeecCCCCceECCCCCcEE
Confidence 457 99999987 2 3457899999995
No 14
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=88.22 E-value=0.33 Score=36.47 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=17.7
Q ss_pred eeccccCCccc-c--cCccccccCCCC
Q 033276 70 IVDKCLKLFSS-P--FPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~--~~~~fCp~CG~~ 93 (123)
++ +|+-|+.+ + ..-..||.||.+
T Consensus 155 ~~-~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KW-RCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EE-EETTTCCEEEEEECCSBCTTTCCB
T ss_pred eE-EECCCCCEeeCCCCCCCCCCCcCC
Confidence 56 99999988 2 222589999987
No 15
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=88.09 E-value=0.23 Score=37.13 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=17.3
Q ss_pred eeccccCCccc---ccCccccccCCCC
Q 033276 70 IVDKCLKLFSS---PFPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~---~~~~~fCp~CG~~ 93 (123)
.+ +|+-|+.+ +.| ..||.||.+
T Consensus 138 ~~-~C~~CG~i~~~~~p-~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VY-ICPICGYTAVDEAP-EYCPVCGAP 162 (170)
T ss_dssp EE-ECTTTCCEEESCCC-SBCTTTCCB
T ss_pred ee-EeCCCCCeeCCCCC-CCCCCCCCC
Confidence 45 79999997 333 589999987
No 16
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=87.88 E-value=0.2 Score=30.68 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=16.4
Q ss_pred eccccCCccc-ccC----------cc--ccccCCCC
Q 033276 71 VDKCLKLFSS-PFP----------LV--ICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k~-~~~----------~~--fCp~CG~~ 93 (123)
+ +|..|+.+ ++. -+ .||.||.+
T Consensus 5 y-~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 Y-VCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp E-EETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred E-ECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 5 89999987 521 11 79999986
No 17
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=85.49 E-value=0.1 Score=34.71 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=20.8
Q ss_pred eeccccCCccc-----ccCccccccCCCCCeeeEEE
Q 033276 70 IVDKCLKLFSS-----PFPLVICIKSNHEIRISPVF 100 (123)
Q Consensus 70 vl~rC~gC~k~-----~~~~~fCp~CG~~~tl~rV~ 100 (123)
+. +|+ |++. .....-|| ||..+.++++.
T Consensus 4 vv-~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 4 IF-RCD-CGRALYSREGAKTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EE-EET-TSCCEEEETTCSEEEET-TTEEEECCSSS
T ss_pred EE-ECC-CCCEEEEcCCCcEEECC-CCCeeeeceEE
Confidence 56 999 9986 23457899 99887666655
No 18
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.05 E-value=0.62 Score=29.20 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=22.3
Q ss_pred eeccccCCccc-ccCccccccCCCCCeeeE
Q 033276 70 IVDKCLKLFSS-PFPLVICIKSNHEIRISP 98 (123)
Q Consensus 70 vl~rC~gC~k~-~~~~~fCp~CG~~~tl~r 98 (123)
.+ .|+-|+.. +.....|.+||+. .|+.
T Consensus 14 k~-iCpkC~a~~~~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 14 KY-VCLRCGATNPWGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp EE-ECTTTCCEECTTCSSCSSSSSC-CCEE
T ss_pred Cc-cCCCCCCcCCCCceecCCCCCc-cccc
Confidence 45 89999988 7778999999998 5654
No 19
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=84.80 E-value=0.4 Score=30.25 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=16.4
Q ss_pred eccccCCccc-ccCc-------------------cccccCCCC
Q 033276 71 VDKCLKLFSS-PFPL-------------------VICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k~-~~~~-------------------~fCp~CG~~ 93 (123)
+ +|..|+.+ ++.+ -.||.||.+
T Consensus 4 y-~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 4 Y-TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp E-EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred e-ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 5 89999987 4321 169999986
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.58 E-value=0.43 Score=37.06 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=16.5
Q ss_pred cccCCccc-c----------cCccccccCCCC
Q 033276 73 KCLKLFSS-P----------FPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~----------~~~~fCp~CG~~ 93 (123)
+|.|||-. | ....+||+||-=
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCee
Confidence 99999975 3 235799999975
No 21
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.12 E-value=0.54 Score=32.08 Aligned_cols=21 Identities=10% Similarity=0.392 Sum_probs=15.2
Q ss_pred cccCCccc-ccCccccccCCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHEI 94 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~~ 94 (123)
.|..|.+. +.. -|||.||.++
T Consensus 20 ~C~~C~~~~~~~-afCPeCgq~L 41 (81)
T 2jrp_A 20 HCETCAKDFSLQ-ALCPDCRQPL 41 (81)
T ss_dssp ECTTTCCEEEEE-EECSSSCSCC
T ss_pred ECccccccCCCc-ccCcchhhHH
Confidence 58888876 433 3888888883
No 22
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=80.60 E-value=0.79 Score=34.92 Aligned_cols=23 Identities=9% Similarity=-0.138 Sum_probs=17.6
Q ss_pred eeccccCCccc-c-cCccccccCCCC
Q 033276 70 IVDKCLKLFSS-P-FPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~-~~~~fCp~CG~~ 93 (123)
++ +|.-|+.+ + ..-..||.||.+
T Consensus 171 ~~-~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FH-LCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp EE-ECSSSCCEEESSCCSBCTTTCCB
T ss_pred EE-EECCCCCEEcCcCCCCCCCCCCC
Confidence 45 89999988 3 222689999987
No 23
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=78.97 E-value=0.92 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=16.8
Q ss_pred eeccccCCccc-ccCc-----------------c--ccccCCCC
Q 033276 70 IVDKCLKLFSS-PFPL-----------------V--ICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~~~~-----------------~--fCp~CG~~ 93 (123)
++ +|..|+.+ +... + .||.||.+
T Consensus 3 ~y-~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KW-QCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EE-EETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cE-EeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 36 89999987 4311 2 69999987
No 24
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=77.37 E-value=0.42 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=2.9
Q ss_pred eccccCCccc-ccC----ccccccCCCC
Q 033276 71 VDKCLKLFSS-PFP----LVICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k~-~~~----~~fCp~CG~~ 93 (123)
.++|+.|+.. ... ...||+||++
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 4589999977 322 3679999985
No 25
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=77.07 E-value=0.93 Score=28.98 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=16.7
Q ss_pred cccCCcccccCccccccCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNH 92 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~ 92 (123)
.|+.|++...+...||.||.
T Consensus 32 ~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 32 ECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp ECTTTCCEECTTBCCTTTCB
T ss_pred ECCCCCCEeCCceEcCCCCc
Confidence 79999988666788999994
No 26
>2dok_A Telomerase-binding protein EST1A; telomerase-associated protein, unknown function; 1.80A {Homo sapiens} PDB: 2hww_A 2hwx_A
Probab=76.89 E-value=1.6 Score=32.04 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=23.6
Q ss_pred ceeEEecccHHHHHHHHHhCceeeCC
Q 033276 33 STVACITGDYAMQNVILQMGLRLLAP 58 (123)
Q Consensus 33 ~~va~vTdDyAmQNVllqlGL~l~sv 58 (123)
.+|+++|.|..|+..|+..||++.++
T Consensus 151 ~~vvLvTnD~nLr~KA~~~Gi~~~~~ 176 (186)
T 2dok_A 151 REVVLLTDDRNLRVKALTRNVPVRDI 176 (186)
T ss_dssp EEEEEECCCHHHHHHHHHTTCCEECH
T ss_pred CcEEEEeCcHHHHHHHHHCCCeeCcH
Confidence 36899999999999999999998875
No 27
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=76.11 E-value=1.2 Score=29.30 Aligned_cols=23 Identities=9% Similarity=-0.044 Sum_probs=17.0
Q ss_pred eeccccCCccc-ccCc-----------------c--ccccCCCC
Q 033276 70 IVDKCLKLFSS-PFPL-----------------V--ICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~~~~-----------------~--fCp~CG~~ 93 (123)
++ +|..|+.+ +... + .||.||.+
T Consensus 7 ~y-~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KY-ECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CE-EETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eE-EeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 36 89999988 5311 2 69999987
No 28
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=75.28 E-value=1.1 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=16.4
Q ss_pred cccCCcccccCccccccCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNH 92 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~ 92 (123)
.|+.|++...+...||.||.
T Consensus 32 ~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 32 PCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp ECTTTCCEECTTSCCTTTCE
T ss_pred ECCCCCCeecceEEcCCCCc
Confidence 79999988556678999994
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=74.95 E-value=1.3 Score=30.05 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=17.0
Q ss_pred eeccccCCccc-ccC----------------c-c--ccccCCCC
Q 033276 70 IVDKCLKLFSS-PFP----------------L-V--ICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~~~----------------~-~--fCp~CG~~ 93 (123)
++ +|..|+.+ +.. . + .||.||.+
T Consensus 27 ~y-~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 27 LF-RCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp EE-EETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred eE-EeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 46 89999988 431 1 2 69999987
No 30
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=74.67 E-value=1.1 Score=32.01 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.1
Q ss_pred ccccccCCCCCee
Q 033276 84 LVICIKSNHEIRI 96 (123)
Q Consensus 84 ~~fCp~CG~~~tl 96 (123)
..|||.||+++..
T Consensus 3 ~~~C~~CG~~~~~ 15 (189)
T 3cng_A 3 MKFCSQCGGEVIL 15 (189)
T ss_dssp CCBCTTTCCBCEE
T ss_pred cccCchhCCcccc
Confidence 3678888888544
No 31
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=74.00 E-value=1.8 Score=26.82 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=16.3
Q ss_pred eccccCCccc-ccCc-----------------c--ccccCCCC
Q 033276 71 VDKCLKLFSS-PFPL-----------------V--ICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k~-~~~~-----------------~--fCp~CG~~ 93 (123)
+ +|..|+.+ ++.. + .||.||.+
T Consensus 4 y-~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 Y-VCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp E-ECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred E-EeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 5 89999988 4221 2 69999976
No 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=73.71 E-value=1.4 Score=27.27 Aligned_cols=23 Identities=13% Similarity=0.025 Sum_probs=16.7
Q ss_pred eeccccCCccc-ccC----------------c-c--ccccCCCC
Q 033276 70 IVDKCLKLFSS-PFP----------------L-V--ICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~~~----------------~-~--fCp~CG~~ 93 (123)
++ +|..|+.+ +.. . + .||.||.+
T Consensus 2 ~~-~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KL-SCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EE-EESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cE-EeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 36 89999987 431 1 2 69999986
No 33
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=71.92 E-value=2 Score=28.00 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.0
Q ss_pred eeccccCCccc---c--cCccccccCCCC
Q 033276 70 IVDKCLKLFSS---P--FPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~---~--~~~~fCp~CG~~ 93 (123)
++ +|+.|+.. + .....|+.||..
T Consensus 10 iL-~CP~ck~~L~~~~~~g~LvC~~c~~~ 37 (67)
T 2jny_A 10 VL-ACPKDKGPLRYLESEQLLVNERLNLA 37 (67)
T ss_dssp CC-BCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred Hh-CCCCCCCcCeEeCCCCEEEcCCCCcc
Confidence 35 78888875 1 335689988866
No 34
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=71.62 E-value=1.7 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.5
Q ss_pred cccCCccc------ccCccccccCCCC
Q 033276 73 KCLKLFSS------PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~------~~~~~fCp~CG~~ 93 (123)
+|++|+++ ......|..||..
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCE
Confidence 89999986 2456899999976
No 35
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=69.90 E-value=1.6 Score=26.80 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=12.0
Q ss_pred cccCCccc-----ccCccccccCCCC
Q 033276 73 KCLKLFSS-----PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-----~~~~~fCp~CG~~ 93 (123)
.|+.|+.. ...+..|++||..
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCE
Confidence 36666652 3446667777753
No 36
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=69.70 E-value=2.1 Score=29.23 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=15.9
Q ss_pred cccCCcccccCccccccCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~ 93 (123)
.|..|..+. +.+.||+||+.
T Consensus 25 AC~~C~~v~-~~d~CPnCgs~ 44 (81)
T 3p8b_A 25 ACRHCHYIT-SEDRCPVCGSR 44 (81)
T ss_dssp EETTTCBEE-SSSSCTTTCCC
T ss_pred HHhhCCCcc-CCCCCCCCCCC
Confidence 799999982 22469999997
No 37
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=68.93 E-value=1.5 Score=32.54 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=24.6
Q ss_pred eEEeeccccCCccc--c-cCccccccCCCCCeeeEEE
Q 033276 67 HRYIVDKCLKLFSS--P-FPLVICIKSNHEIRISPVF 100 (123)
Q Consensus 67 ~~wvl~rC~gC~k~--~-~~~~fCp~CG~~~tl~rV~ 100 (123)
-.-.- +|..|+.. + .....||.||+. -.||||
T Consensus 137 Gvv~a-~~~~~g~~m~~~~~~~~cp~~g~~-e~RKva 171 (179)
T 3m7n_A 137 GVLRA-LCSNCKTEMVREGDILKCPECGRV-EKRKIS 171 (179)
T ss_dssp EEEEC-BCTTTCCBCEECSSSEECSSSCCE-ECCCBC
T ss_pred CEEEe-cccccCCceEECCCEEECCCCCCE-EEEecc
Confidence 34445 89999986 2 356889999999 888887
No 38
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.78 E-value=3.8 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.022 Sum_probs=24.9
Q ss_pred eeeeEEeeccccCCccc-c---cCccccccCCCCCeeeE
Q 033276 64 RQLHRYIVDKCLKLFSS-P---FPLVICIKSNHEIRISP 98 (123)
Q Consensus 64 ~~v~~wvl~rC~gC~k~-~---~~~~fCp~CG~~~tl~r 98 (123)
.++..+-+ +|..|+.. . .....||.|++. .+.+
T Consensus 61 ~~L~v~p~-~C~~CG~~F~~~~~kPsrCP~CkSe-~Ie~ 97 (105)
T 2gmg_A 61 MVLLIKPA-QCRKCGFVFKAEINIPSRCPKCKSE-WIEE 97 (105)
T ss_dssp EEEEECCC-BBTTTCCBCCCCSSCCSSCSSSCCC-CBCC
T ss_pred cEEEEECc-ChhhCcCeecccCCCCCCCcCCCCC-ccCC
Confidence 46788889 99999987 1 223789999999 4443
No 39
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=67.81 E-value=2.3 Score=34.61 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=19.3
Q ss_pred cccCCccc-ccCccccccCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.|.-|+.. ...+.-||.||+.
T Consensus 210 ~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 210 SCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EETTTCCEEECCTTSCSSSCCC
T ss_pred EeCCCCCEEeecCcCCcCCCCC
Confidence 79999998 8889999999997
No 40
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=67.47 E-value=1.8 Score=30.16 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.2
Q ss_pred ccccccCCCCCeee
Q 033276 84 LVICIKSNHEIRIS 97 (123)
Q Consensus 84 ~~fCp~CG~~~tl~ 97 (123)
..|||.|||-+..+
T Consensus 4 m~FCp~Cgn~L~~~ 17 (113)
T 3h0g_I 4 FQYCIECNNMLYPR 17 (113)
T ss_dssp CCCCSSSCCCCEEC
T ss_pred ceeCcCCCCEeeEc
Confidence 46888888876555
No 41
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=67.03 E-value=2.3 Score=29.18 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=16.7
Q ss_pred eeccccCCccc-ccC----------------c-c--ccccCCCC
Q 033276 70 IVDKCLKLFSS-PFP----------------L-V--ICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-~~~----------------~-~--fCp~CG~~ 93 (123)
++ +|..|+.+ +.. . + .||.||.+
T Consensus 35 ~y-~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 35 KW-ICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp EE-EETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred eE-ECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 46 99999987 431 1 1 69999986
No 42
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=66.99 E-value=5.7 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.032 Sum_probs=26.4
Q ss_pred eeEEecccHHHHHHHHHhCceeeCCCCCcc
Q 033276 34 TVACITGDYAMQNVILQMGLRLLAPGGMQI 63 (123)
Q Consensus 34 ~va~vTdDyAmQNVllqlGL~l~sv~g~~I 63 (123)
...++|.|..++..++..|++++.+.+.+.
T Consensus 111 ~~~LvT~D~~l~~~a~~~Gv~vi~~~~~~~ 140 (147)
T 1o4w_A 111 GCILITNDKELKRKAKQRGIPVGYLKEDKR 140 (147)
T ss_dssp TCEEECCCHHHHHHHHHTTCCEECCCCCCC
T ss_pred CCEEEECCHHHHHHHHHCCCeEEEecCCcE
Confidence 368999999999999999999999987554
No 43
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=65.72 E-value=3.6 Score=30.98 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=20.3
Q ss_pred EEeeccccCCccc----ccCccccccCCCC
Q 033276 68 RYIVDKCLKLFSS----PFPLVICIKSNHE 93 (123)
Q Consensus 68 ~wvl~rC~gC~k~----~~~~~fCp~CG~~ 93 (123)
.|.|..|+.|+|. ....-+|++||..
T Consensus 39 ~~~Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 39 KLYYYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp CCEEEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred cEEehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 6777799999986 2345689999974
No 44
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.91 E-value=2.9 Score=27.33 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.3
Q ss_pred cccCCccc------ccCccccccCCCC
Q 033276 73 KCLKLFSS------PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~------~~~~~fCp~CG~~ 93 (123)
+|++|+++ ......|..||..
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCE
Confidence 89999986 2456899999975
No 45
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=63.50 E-value=2.4 Score=30.69 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=13.1
Q ss_pred cccCCccc--cc-C------ccccccCCCC
Q 033276 73 KCLKLFSS--PF-P------LVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~--~~-~------~~fCp~CG~~ 93 (123)
-|+.|+.. +. . +-.|+.||..
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCc
Confidence 47777776 21 1 3677778765
No 46
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=62.42 E-value=3.9 Score=25.48 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=13.3
Q ss_pred cccCCccc-----ccCccccccCCCC
Q 033276 73 KCLKLFSS-----PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-----~~~~~fCp~CG~~ 93 (123)
.|+.|+.. ...+..|++||..
T Consensus 20 fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 20 FCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cCcCCCCceeEeccCCEEECCCCCCE
Confidence 67777753 2346677777765
No 47
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=60.78 E-value=5.5 Score=27.51 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.3
Q ss_pred cceeeeEEeeccccCCccc-----ccCccccccCCCCCeeeEEEEE
Q 033276 62 QIRQLHRYIVDKCLKLFSS-----PFPLVICIKSNHEIRISPVFML 102 (123)
Q Consensus 62 ~I~~v~~wvl~rC~gC~k~-----~~~~~fCp~CG~~~tl~rV~~~ 102 (123)
+++-+++|= +|. |... .+|..-|++||+. .-.|++|.
T Consensus 41 ~~~a~KRFF--kC~-C~~Rt~sl~r~P~~~C~~Cg~~-~wer~~M~ 82 (92)
T 2kwq_A 41 WHNGVKRFF--KCP-CGNRTISLDRLPKKHCSTCGLF-KWERVGML 82 (92)
T ss_dssp EEEEECEEE--ECT-TSCEEEESSSSCCSCCTTTCSC-CCEEECCC
T ss_pred EEeeeEEEE--ECC-CCCceeEeeeCCCCCCCCCCCC-ceEEeecc
Confidence 445566664 695 9874 4677899999999 68888753
No 48
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=60.38 E-value=4.4 Score=28.48 Aligned_cols=9 Identities=11% Similarity=0.131 Sum_probs=5.1
Q ss_pred cccccCCCC
Q 033276 85 VICIKSNHE 93 (123)
Q Consensus 85 ~fCp~CG~~ 93 (123)
..|+.||..
T Consensus 27 ~~C~~C~y~ 35 (122)
T 1twf_I 27 FECRTCSYV 35 (122)
T ss_dssp EECSSSSCE
T ss_pred EECCcCCCe
Confidence 456666654
No 49
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=59.72 E-value=4.7 Score=26.66 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=16.5
Q ss_pred cccCCcccccCccccccCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~ 93 (123)
.|.-|.++- ..+.||+||+.
T Consensus 13 AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 13 ACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp EETTTCBEE-SSSSCTTTCCC
T ss_pred hHHhCCccc-cCCcCCCccCC
Confidence 799999883 45789999987
No 50
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=59.62 E-value=5.3 Score=33.07 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEeeccccCCccc------ccCccccccCCCCC
Q 033276 68 RYIVDKCLKLFSS------PFPLVICIKSNHEI 94 (123)
Q Consensus 68 ~wvl~rC~gC~k~------~~~~~fCp~CG~~~ 94 (123)
-|++ .|++|+.. +.....||.||++.
T Consensus 242 g~v~-~C~~C~~~~~~~~~~~~~~~C~~cg~~~ 273 (392)
T 3axs_A 242 GYIQ-YCFNCMNREVVTDLYKFKEKCPHCGSKF 273 (392)
T ss_dssp EEEE-ECTTTCCEEEECCGGGCCSBCTTTCSBC
T ss_pred ceEE-ECCCCCCeEeecCCCCCCCcCCCCCCcc
Confidence 6888 99999864 13357899999984
No 51
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=59.19 E-value=3.8 Score=26.25 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.4
Q ss_pred eeccccCCccc-ccCccccccCCCCCeeeE
Q 033276 70 IVDKCLKLFSS-PFPLVICIKSNHEIRISP 98 (123)
Q Consensus 70 vl~rC~gC~k~-~~~~~fCp~CG~~~tl~r 98 (123)
++ .|.-|+.. +..-.-|-+||+. .||.
T Consensus 19 k~-ICrkC~ARnp~~A~~CRKCg~~-~LRp 46 (56)
T 2ayj_A 19 KK-VCRKCGALNPIRATKCRRCHST-NLRL 46 (56)
T ss_dssp CE-EETTTCCEECTTCSSCTTTCCC-CEEE
T ss_pred hh-hhccccCcCCcccccccCCCCC-CCCc
Confidence 45 89999987 6667889999988 6653
No 52
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=59.02 E-value=7.9 Score=25.66 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=19.3
Q ss_pred eeEEeeccccCCccc---ccC--ccccccCCCCCe
Q 033276 66 LHRYIVDKCLKLFSS---PFP--LVICIKSNHEIR 95 (123)
Q Consensus 66 v~~wvl~rC~gC~k~---~~~--~~fCp~CG~~~t 95 (123)
.+.|++ |..|.+. +.. ...||.||+-.|
T Consensus 34 ~~v~I~--CnDC~~~s~v~~h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 34 MTVDIL--CNDCNGRSTVQFHILGMKCKICESYNT 66 (79)
T ss_dssp CEEEEE--ESSSCCEEEEECCTTCCCCTTTSCCCE
T ss_pred CEeEEE--CCCCCCCccCCceeecccCcCCCCcCe
Confidence 345665 9999987 222 347999998744
No 53
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.56 E-value=3.8 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.162 Sum_probs=15.6
Q ss_pred eccccCCcc-c---c--cCccccccCCCC
Q 033276 71 VDKCLKLFS-S---P--FPLVICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k-~---~--~~~~fCp~CG~~ 93 (123)
+ .|+.|+. . + .....|+.||..
T Consensus 6 ~-~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 6 K-VCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp C-SCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred E-eCcCCCCcceEEcCCCCeEECcccCCc
Confidence 5 7888876 2 2 245789999875
No 54
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=58.20 E-value=7.3 Score=25.84 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=14.6
Q ss_pred CccccccCCCCCeeeEEEEEe
Q 033276 83 PLVICIKSNHEIRISPVFMLI 103 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~~~ 103 (123)
.+..||.||.. .++|+++-|
T Consensus 26 ~ky~C~fCgk~-~vkR~a~GI 45 (73)
T 1ffk_W 26 KKYKCPVCGFP-KLKRASTSI 45 (73)
T ss_pred cCccCCCCCCc-eeEEEEeEE
Confidence 46778888877 788887543
No 55
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=57.85 E-value=4.9 Score=27.50 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=17.9
Q ss_pred cccCCccc------ccCccccccCCCCC
Q 033276 73 KCLKLFSS------PFPLVICIKSNHEI 94 (123)
Q Consensus 73 rC~gC~k~------~~~~~fCp~CG~~~ 94 (123)
+|++|+++ ......|..||..+
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCC
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEE
Confidence 89999987 24568999999863
No 56
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=57.27 E-value=4.6 Score=27.55 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.9
Q ss_pred ccccCCccc------ccCccccccCCCC
Q 033276 72 DKCLKLFSS------PFPLVICIKSNHE 93 (123)
Q Consensus 72 ~rC~gC~k~------~~~~~fCp~CG~~ 93 (123)
-+|++|+++ ..+...|..||..
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~ 60 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAI 60 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCE
Confidence 389999987 2456899999976
No 57
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=57.06 E-value=4.6 Score=25.73 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.2
Q ss_pred cccCCccc-ccCccccccCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.|..|..+ .. +.||+||+.
T Consensus 3 AC~~C~~v~~~--~~CpnC~~~ 22 (59)
T 3lpe_B 3 ACLKCKYLTND--EICPICHSP 22 (59)
T ss_dssp EETTTCBEESS--SBCTTTCCB
T ss_pred ccccCCcccCC--CCCCCCCCC
Confidence 68899988 33 369999997
No 58
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=56.31 E-value=6.1 Score=29.33 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=21.0
Q ss_pred cCccccccCCCCCeeeEEEEEeeEEEEEeeCC-ccceee
Q 033276 82 FPLVICIKSNHEIRISPVFMLILICLYIQVDT-EMPCLL 119 (123)
Q Consensus 82 ~~~~fCp~CG~~~tl~rV~~~~~~~~~~~~~~-~~~~~~ 119 (123)
..+.+|.+||.. -...++-.| ++|||+
T Consensus 67 ~g~I~C~~Cgq~-----------WG~~m~yk~~~LP~Lk 94 (145)
T 3eqt_A 67 GGVISCRNCGEV-----------WGLQMIYKSVKLPVLK 94 (145)
T ss_dssp EEEEEETTTCCE-----------EEEEEEETTEEEEEEC
T ss_pred CcEEEchhhChh-----------hHhhEEeccccCceEe
Confidence 457899999998 244667777 899996
No 59
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=55.45 E-value=7.2 Score=30.42 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=26.1
Q ss_pred eeeEEeeccccCCccc---c------cCccccccCCCCCeeeEEEEEeeEEEEE
Q 033276 65 QLHRYIVDKCLKLFSS---P------FPLVICIKSNHEIRISPVFMLILICLYI 109 (123)
Q Consensus 65 ~v~~wvl~rC~gC~k~---~------~~~~fCp~CG~~~tl~rV~~~~~~~~~~ 109 (123)
++..=.+ +|..|+.. + ..-..||.|+++ . .....+.|.|+
T Consensus 129 ~~~~~~f-~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~-~---f~l~~~~s~f~ 177 (279)
T 1ltl_A 129 RIVKAVF-ECRGCMRHHAVTQSTNMITEPSLCSECGGR-S---FRLLQDESEFL 177 (279)
T ss_dssp EEEEEEE-EETTTCCEEEEECSSSSCCCCSCCTTTCCC-C---EEECGGGCEEE
T ss_pred EEEEEEE-EcCCCCCEEEEEecCCcccCCCcCCCCCCC-C---cEEeccccEEE
Confidence 4556668 99999964 1 112469999998 3 33445666665
No 60
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=54.68 E-value=5.8 Score=27.02 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=13.8
Q ss_pred CccccccCCCCCeeeEEEE
Q 033276 83 PLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~ 101 (123)
.+..||.||.. .++|+++
T Consensus 34 ~ky~CpfCGk~-~vkR~a~ 51 (83)
T 3j21_i 34 QKHTCPVCGRK-AVKRIST 51 (83)
T ss_dssp SCBCCSSSCSS-CEEEEET
T ss_pred cccCCCCCCCc-eeEecCc
Confidence 35778888888 7888774
No 61
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=54.51 E-value=5.7 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.3
Q ss_pred cccCCccc------ccCccccccCCCC
Q 033276 73 KCLKLFSS------PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~------~~~~~fCp~CG~~ 93 (123)
+|++|+++ ......|..||.-
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 89999986 2457899999976
No 62
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=54.04 E-value=2.6 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=13.0
Q ss_pred CCCcceeeeEEeeccccCCccc
Q 033276 59 GGMQIRQLHRYIVDKCLKLFSS 80 (123)
Q Consensus 59 ~g~~I~~v~~wvl~rC~gC~k~ 80 (123)
+...+++-+.|.+ +|.+|+..
T Consensus 10 eT~l~~~~~~~~l-~C~aCG~~ 30 (36)
T 1k81_A 10 DTKIIKEGRVHLL-KCMACGAI 30 (36)
T ss_dssp EEEEEEETTEEEE-EEETTTEE
T ss_pred CcEEEEeCCcEEE-EhhcCCCc
Confidence 3444455567777 77777754
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.69 E-value=3.2 Score=27.95 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=8.9
Q ss_pred ccccccCCCCC
Q 033276 84 LVICIKSNHEI 94 (123)
Q Consensus 84 ~~fCp~CG~~~ 94 (123)
..-||.||+++
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 46799999984
No 64
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=53.43 E-value=7 Score=36.86 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=18.6
Q ss_pred eeccccCCccc------------ccCccccccCCCC
Q 033276 70 IVDKCLKLFSS------------PFPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~------------~~~~~fCp~CG~~ 93 (123)
-| +|+.|... |++-+.||+||.+
T Consensus 502 hy-~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~ 536 (1041)
T 3f2b_A 502 HY-VCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK 536 (1041)
T ss_dssp EE-ECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB
T ss_pred cc-cCccccccccccccccccccCCccccCcccccc
Confidence 37 89999962 4677889999998
No 65
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=53.15 E-value=8.9 Score=23.30 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=7.4
Q ss_pred ccccccCCCC
Q 033276 84 LVICIKSNHE 93 (123)
Q Consensus 84 ~~fCp~CG~~ 93 (123)
...||+||++
T Consensus 9 ~~~Cp~Cg~~ 18 (50)
T 1tfi_A 9 LFTCGKCKKK 18 (50)
T ss_dssp CSCCSSSCSS
T ss_pred ccCCCCCCCC
Confidence 3568888877
No 66
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=53.05 E-value=8.7 Score=21.42 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=17.7
Q ss_pred cccCCccc-ccCccccccCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.|++|+.. ...+..|-.||.+
T Consensus 8 ~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 8 QCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp BCSSSCCBCCTTCSBCSSSCCB
T ss_pred ccCCCCCccccccccccccCCc
Confidence 68899988 6678899999976
No 67
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=52.71 E-value=3.8 Score=25.72 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=20.7
Q ss_pred EEeeccccCCccc------c----c----CccccccCCCCCeeeE
Q 033276 68 RYIVDKCLKLFSS------P----F----PLVICIKSNHEIRISP 98 (123)
Q Consensus 68 ~wvl~rC~gC~k~------~----~----~~~fCp~CG~~~tl~r 98 (123)
.-.+ .|.+|... . + -+.|||.|+.. |+.+
T Consensus 8 ~I~L-~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kH-tlhk 50 (54)
T 3v2d_6 8 KLLL-ECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKH-TVHR 50 (54)
T ss_dssp EEEE-EETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEE-EEEE
T ss_pred eEEE-EEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCE-eeEE
Confidence 3457 89999642 1 1 16899999999 7765
No 68
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=52.20 E-value=11 Score=22.89 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=5.1
Q ss_pred cccccCCCC
Q 033276 85 VICIKSNHE 93 (123)
Q Consensus 85 ~fCp~CG~~ 93 (123)
.-||+||++
T Consensus 16 ~~Cp~Cg~~ 24 (57)
T 1qyp_A 16 ITCPKCGND 24 (57)
T ss_dssp CCCTTTCCS
T ss_pred eECCCCCCC
Confidence 446666654
No 69
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=52.19 E-value=12 Score=29.10 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=20.1
Q ss_pred cccCCccc-----ccCccccccCCCCCeeeEEEE
Q 033276 73 KCLKLFSS-----PFPLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 73 rC~gC~k~-----~~~~~fCp~CG~~~tl~rV~~ 101 (123)
.|+.|+.. ...+..||.||.. .-.|++.
T Consensus 109 fC~~CG~~~~~~~~~~~~~C~~C~~~-~yp~~~~ 141 (269)
T 1vk6_A 109 YCGYCGHEMYPSKTEWAMLCSHCRER-YYPQIAP 141 (269)
T ss_dssp BCTTTCCBEEECSSSSCEEESSSSCE-ECCCCEE
T ss_pred ccccCCCcCccCCCceeeeCCCCCCE-ecCCCCc
Confidence 69999976 2457899999986 4444443
No 70
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=49.62 E-value=6.3 Score=26.49 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=13.8
Q ss_pred eeccccCCccc-----ccCccccccCCCC
Q 033276 70 IVDKCLKLFSS-----PFPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~-----~~~~~fCp~CG~~ 93 (123)
.+ .|+.|++. ....--|+.||+.
T Consensus 27 ~y-~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DH-ACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp CE-ECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cC-cCCCCCCcceeccCCCeEECCCCCCE
Confidence 35 67777764 1234567777765
No 71
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.52 E-value=6.8 Score=24.33 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=13.8
Q ss_pred cccCCccc----c--cCccccccCCCC
Q 033276 73 KCLKLFSS----P--FPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~----~--~~~~fCp~CG~~ 93 (123)
+|+.|+.. + ....+|..||--
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 68888762 2 235778888854
No 72
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=49.15 E-value=5.9 Score=25.44 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=20.2
Q ss_pred eEEeeccccCCccc--ccCccccccCCC-C
Q 033276 67 HRYIVDKCLKLFSS--PFPLVICIKSNH-E 93 (123)
Q Consensus 67 ~~wvl~rC~gC~k~--~~~~~fCp~CG~-~ 93 (123)
++..+ |.-|++. ..-+..|..||. |
T Consensus 15 ktH~~--CrRCG~~syH~qK~~Ca~CGygp 42 (57)
T 1vq8_1 15 TTHTK--CRRCGEKSYHTKKKVCSSCGFGK 42 (57)
T ss_dssp CCEEE--CTTTCSEEEETTTTEETTTCTTT
T ss_pred Ccccc--ccccCChhhhccccccccccCCc
Confidence 45554 9999987 667899999998 6
No 73
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.77 E-value=6.9 Score=27.18 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=14.1
Q ss_pred ccccccCCCCCeeeEEE
Q 033276 84 LVICIKSNHEIRISPVF 100 (123)
Q Consensus 84 ~~fCp~CG~~~tl~rV~ 100 (123)
+-|||.|+.. |..+|+
T Consensus 8 ~tyC~~C~kH-t~HkVt 23 (94)
T 3j21_j 8 RTYCPFCKKH-TIHKVE 23 (94)
T ss_dssp EECCTTTTSC-EEEEEC
T ss_pred eecCcCCCCC-cceEEE
Confidence 5799999999 898886
No 74
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=48.42 E-value=6.4 Score=24.67 Aligned_cols=29 Identities=0% Similarity=-0.361 Sum_probs=20.1
Q ss_pred EEeeccccCCccc------c----c----CccccccCCCCCeeeE
Q 033276 68 RYIVDKCLKLFSS------P----F----PLVICIKSNHEIRISP 98 (123)
Q Consensus 68 ~wvl~rC~gC~k~------~----~----~~~fCp~CG~~~tl~r 98 (123)
.-.+ .|.+|... . + -+.|||.|+.. |+.+
T Consensus 9 ~I~L-~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kH-tlhk 51 (55)
T 2zjr_1 9 IVKM-ESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 51 (55)
T ss_pred EEEE-EEcccCCeeEeEcccCCCCCcceEEEccCCCCCCE-EeEE
Confidence 4467 89998542 1 1 15799999999 7765
No 75
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=47.36 E-value=10 Score=27.74 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=19.5
Q ss_pred cCccccccCCCCCeeeEEEEEeeEEEEEeeCC-ccceee
Q 033276 82 FPLVICIKSNHEIRISPVFMLILICLYIQVDT-EMPCLL 119 (123)
Q Consensus 82 ~~~~fCp~CG~~~tl~rV~~~~~~~~~~~~~~-~~~~~~ 119 (123)
..+.+|. ||.. -...++-.| ++|||+
T Consensus 65 ~g~I~C~-Cgq~-----------WG~~m~yk~~~LP~Lk 91 (133)
T 3ga3_A 65 NGEIICK-CGQA-----------WGTMMVHKGLDLPCLK 91 (133)
T ss_dssp EEEEEET-TSCE-----------EEEEEEETTEEEEEEC
T ss_pred CceEEEe-cCCh-----------hhhhEEeccccCceEE
Confidence 4468899 9998 244666677 899996
No 76
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=47.25 E-value=6.5 Score=27.32 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=14.2
Q ss_pred ccccccCCCCCeeeEEE
Q 033276 84 LVICIKSNHEIRISPVF 100 (123)
Q Consensus 84 ~~fCp~CG~~~tl~rV~ 100 (123)
+-|||.|+.. |..+|+
T Consensus 8 ~tyCp~C~kH-t~HkVt 23 (92)
T 1vq8_3 8 NTYCPHCNEH-QEHEVE 23 (92)
T ss_dssp EEEETTTTEE-EEEEEE
T ss_pred cccCCCCCCC-ccEEEE
Confidence 5799999999 899887
No 77
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=46.91 E-value=3.2 Score=27.63 Aligned_cols=16 Identities=6% Similarity=-0.037 Sum_probs=8.4
Q ss_pred ccccccCCCCCeeeEEE
Q 033276 84 LVICIKSNHEIRISPVF 100 (123)
Q Consensus 84 ~~fCp~CG~~~tl~rV~ 100 (123)
+..||.||.. .++|++
T Consensus 26 ky~C~fCgk~-~vkR~a 41 (72)
T 3jyw_9 26 RYDCSFCGKK-TVKRGA 41 (72)
T ss_dssp CBCCSSCCSS-CBSBCS
T ss_pred CccCCCCCCc-eeEecC
Confidence 3455555555 555544
No 78
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=46.49 E-value=7.1 Score=24.10 Aligned_cols=29 Identities=3% Similarity=-0.374 Sum_probs=19.3
Q ss_pred EEeeccccCCccc------c--c----CccccccCCCCCeeeE
Q 033276 68 RYIVDKCLKLFSS------P--F----PLVICIKSNHEIRISP 98 (123)
Q Consensus 68 ~wvl~rC~gC~k~------~--~----~~~fCp~CG~~~tl~r 98 (123)
.-.+ .|.+|... + + -+.|||.|+.. |+.+
T Consensus 9 ~i~L-~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~kh-tlhk 49 (52)
T 2ftc_P 9 LVRM-VSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQR-VLFV 49 (52)
T ss_pred EEEE-EEecCCCeeEEEecCCCCceeEEEccCCCCCce-EeEE
Confidence 3456 78888542 1 1 25799999999 6654
No 79
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.30 E-value=12 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=16.4
Q ss_pred eeccccCCccc---c--cCccccccCCCC
Q 033276 70 IVDKCLKLFSS---P--FPLVICIKSNHE 93 (123)
Q Consensus 70 vl~rC~gC~k~---~--~~~~fCp~CG~~ 93 (123)
++ +|+.|+.. . .....|+.||..
T Consensus 8 iL-~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2hf1_A 8 IL-VCPLCKGPLVFDKSKDELICKGDRLA 35 (68)
T ss_dssp EC-BCTTTCCBCEEETTTTEEEETTTTEE
T ss_pred he-ECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 45 89999875 1 245689999876
No 80
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=46.21 E-value=5.5 Score=24.54 Aligned_cols=28 Identities=4% Similarity=-0.336 Sum_probs=19.6
Q ss_pred EeeccccCCccc------c--------cCccccccCCCCCeeeE
Q 033276 69 YIVDKCLKLFSS------P--------FPLVICIKSNHEIRISP 98 (123)
Q Consensus 69 wvl~rC~gC~k~------~--------~~~~fCp~CG~~~tl~r 98 (123)
-.+ .|.+|... . .-+.|||.|+.. |+.+
T Consensus 6 I~L-~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~kh-tlhk 47 (50)
T 3r8s_1 6 IKL-VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQH-VIYK 47 (50)
T ss_dssp EEE-EESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEE-EEEE
T ss_pred EEE-EEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCE-eeEE
Confidence 457 89999542 1 126899999999 6654
No 81
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=45.89 E-value=9.6 Score=21.09 Aligned_cols=21 Identities=14% Similarity=0.217 Sum_probs=17.3
Q ss_pred cccCCccc-ccCccccccCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.|..|+.. ...+..|-+||.+
T Consensus 7 ~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 7 LCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp ECTTTCCEEETTCCBCTTTCCB
T ss_pred CcCcCcCCcChhcceecCCCCc
Confidence 57889887 6678999999976
No 82
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=45.67 E-value=8 Score=29.84 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=24.8
Q ss_pred CCCcceeeeEEeeccccCCccc-c-------------cCccccccCCCC
Q 033276 59 GGMQIRQLHRYIVDKCLKLFSS-P-------------FPLVICIKSNHE 93 (123)
Q Consensus 59 ~g~~I~~v~~wvl~rC~gC~k~-~-------------~~~~fCp~CG~~ 93 (123)
+-.+-+....+.+ +|++|++. + .....||+|+..
T Consensus 11 DeeRfr~c~~l~l-~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~ 58 (206)
T 3flo_B 11 DVERFKDTVTLEL-SCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQL 58 (206)
T ss_dssp CTTTTTTCCCEEE-ECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCB
T ss_pred HHHHhCcCceeEE-ECCCCCCccCCCCcccCCCcccccccccCCCCCCc
Confidence 4466777889999 99999864 1 123459999886
No 83
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=45.29 E-value=6.2 Score=25.70 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.4
Q ss_pred ccccccCCCCCeeeE
Q 033276 84 LVICIKSNHEIRISP 98 (123)
Q Consensus 84 ~~fCp~CG~~~tl~r 98 (123)
+.|||.|... |+.+
T Consensus 49 kKycp~c~kH-tlhk 62 (66)
T 3bbo_3 49 RKFCPYCYKH-TIHG 62 (66)
T ss_dssp CCCCCSSSSC-CCCC
T ss_pred EccCCCCCCe-eeEE
Confidence 5799999999 6654
No 84
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=45.26 E-value=7.4 Score=26.98 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=13.1
Q ss_pred CccccccCCCCCeeeEEEE
Q 033276 83 PLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~ 101 (123)
.+.+||.||.. .++|+++
T Consensus 35 ~ky~CpfCgk~-~vkR~a~ 52 (92)
T 3iz5_m 35 SKYFCEFCGKF-AVKRKAV 52 (92)
T ss_dssp SCBCCTTTCSS-CBEEEET
T ss_pred ccccCcccCCC-eeEecCc
Confidence 35678888887 7777763
No 85
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=43.90 E-value=9 Score=29.57 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=16.9
Q ss_pred EEeeccccCCccc-cc----------CccccccCCC
Q 033276 68 RYIVDKCLKLFSS-PF----------PLVICIKSNH 92 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~----------~~~fCp~CG~ 92 (123)
-+.. +|..|.+. +. ....||.||+
T Consensus 121 ~~~~-~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 121 MDKL-DCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EEEE-EETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred cCee-eeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 3455 89999876 21 1246999999
No 86
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=43.77 E-value=12 Score=24.15 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=14.4
Q ss_pred cccCCccc---c--cCccccccCCCC
Q 033276 73 KCLKLFSS---P--FPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~---~--~~~~fCp~CG~~ 93 (123)
+|+.|+.. . .....|+.||..
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLA 35 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 78888865 1 234678888766
No 87
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=43.56 E-value=7.4 Score=26.37 Aligned_cols=13 Identities=8% Similarity=-0.054 Sum_probs=10.8
Q ss_pred cCccccccCCCCC
Q 033276 82 FPLVICIKSNHEI 94 (123)
Q Consensus 82 ~~~~fCp~CG~~~ 94 (123)
..+.||+.||.++
T Consensus 65 ~~r~FC~~CGs~l 77 (118)
T 3fac_A 65 AKHWFCRTCGIYT 77 (118)
T ss_dssp SEEEEETTTCCEE
T ss_pred EeeEECCCCCccc
Confidence 4578999999984
No 88
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=42.85 E-value=11 Score=28.54 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=16.3
Q ss_pred cccCCccc----ccCccccccCCC
Q 033276 73 KCLKLFSS----PFPLVICIKSNH 92 (123)
Q Consensus 73 rC~gC~k~----~~~~~fCp~CG~ 92 (123)
.|..|+.. .....||+.||.
T Consensus 12 ~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 12 RCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp BCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCcccccccccccccccc
Confidence 79999985 345789999995
No 89
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=42.61 E-value=7.5 Score=28.90 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=17.3
Q ss_pred ccccCCccc----ccCccccccCCCC
Q 033276 72 DKCLKLFSS----PFPLVICIKSNHE 93 (123)
Q Consensus 72 ~rC~gC~k~----~~~~~fCp~CG~~ 93 (123)
..|+.|... +.....||.||++
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 379999865 5567889999987
No 90
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=42.57 E-value=9.2 Score=27.58 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=13.9
Q ss_pred CccccccCCCCCeeeEEEE
Q 033276 83 PLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~ 101 (123)
.+.+||.||.. .++|+++
T Consensus 59 akytCPfCGk~-~vKR~av 76 (116)
T 3cc2_Z 59 EDHACPNCGED-RVDRQGT 76 (116)
T ss_dssp SCEECSSSCCE-EEEEEET
T ss_pred cCCcCCCCCCc-eeEecCc
Confidence 46788888887 7888774
No 91
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=42.51 E-value=8.5 Score=29.52 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=17.8
Q ss_pred EEeeccccCCccc-cc----------CccccccCCCC
Q 033276 68 RYIVDKCLKLFSS-PF----------PLVICIKSNHE 93 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~----------~~~fCp~CG~~ 93 (123)
-+.. +|..|.+. +. ....||.||+.
T Consensus 119 ~~~~-~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~ 154 (246)
T 1yc5_A 119 VEEY-YCVRCEKKYTVEDVIKKLESSDVPLCDDCNSL 154 (246)
T ss_dssp EEEE-EETTTCCEEEHHHHHHHTTTCSSCBCTTTCCB
T ss_pred ccee-EcCCCCCCCcHHHHHHHhccCCCCCCCCCCCc
Confidence 3456 89999875 21 13579999987
No 92
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=42.41 E-value=8.5 Score=27.46 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=14.3
Q ss_pred ccccccCCCCCeeeEEE
Q 033276 84 LVICIKSNHEIRISPVF 100 (123)
Q Consensus 84 ~~fCp~CG~~~tl~rV~ 100 (123)
+-|||.|+.. |..+|+
T Consensus 9 ~tyCpkC~kH-t~HkVt 24 (109)
T 4a18_C 9 KTYCKKCNSH-TNHKVS 24 (109)
T ss_dssp EEEETTTTEE-EEEEEE
T ss_pred eecCcCCCCC-cceEEE
Confidence 5799999999 899887
No 93
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=42.33 E-value=9.3 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=21.1
Q ss_pred eeCCCCCcceeeeEEeeccccCCccc-cc-------------CccccccCCCC
Q 033276 55 LLAPGGMQIRQLHRYIVDKCLKLFSS-PF-------------PLVICIKSNHE 93 (123)
Q Consensus 55 l~sv~g~~I~~v~~wvl~rC~gC~k~-~~-------------~~~fCp~CG~~ 93 (123)
++.++|. -+.. +|..|++. +. ..-.||.||+.
T Consensus 127 v~elHG~------~~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~ 172 (289)
T 1q1a_A 127 IIEAHGS------FAHC-HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 172 (289)
T ss_dssp EEETTEE------EEEE-EETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCB
T ss_pred EEEecCC------cCce-EECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCE
Confidence 5555552 3456 89999875 21 12479999986
No 94
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=42.26 E-value=13 Score=24.16 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=15.4
Q ss_pred eccccCCccc---c--cCccccccCCCC
Q 033276 71 VDKCLKLFSS---P--FPLVICIKSNHE 93 (123)
Q Consensus 71 l~rC~gC~k~---~--~~~~fCp~CG~~ 93 (123)
+ +|+.|+.. + .....|+.||..
T Consensus 9 L-~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (70)
T 2js4_A 9 L-VCPVCKGRLEFQRAQAELVCNADRLA 35 (70)
T ss_dssp C-BCTTTCCBEEEETTTTEEEETTTTEE
T ss_pred e-ECCCCCCcCEEeCCCCEEEcCCCCce
Confidence 5 78888875 1 235678888866
No 95
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=41.33 E-value=7.7 Score=23.09 Aligned_cols=27 Identities=11% Similarity=0.385 Sum_probs=16.9
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
|..|+.++... -|...||.+-|..||+
T Consensus 42 C~~C~~~L~~~---------~~~~~~g~~yC~~~y~ 68 (72)
T 3f6q_B 42 CAQCFQQFPEG---------LFYEFEGRKYCEHDFQ 68 (72)
T ss_dssp CTTTCCCCGGG---------CCEEETTEEECHHHHH
T ss_pred ccCCCCCCCCC---------CeEeECCeEeCHHHHH
Confidence 66777774222 1556678887877763
No 96
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.25 E-value=11 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=18.1
Q ss_pred cccCCccc--ccCccccccCCC-C
Q 033276 73 KCLKLFSS--PFPLVICIKSNH-E 93 (123)
Q Consensus 73 rC~gC~k~--~~~~~fCp~CG~-~ 93 (123)
.|.-|++. ..-+..|..||. +
T Consensus 19 lCrRCG~~syH~qK~~Ca~CGygp 42 (62)
T 3j21_e 19 RCRRCGRVSYNVKKGYCAACGFGR 42 (62)
T ss_dssp BCSSSCSBCEETTTTEETTTCTTT
T ss_pred eecccCcchhccccccccccCCch
Confidence 69999987 677899999997 5
No 97
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=41.07 E-value=9.8 Score=26.95 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=13.1
Q ss_pred CccccccCCCCCeeeEEEE
Q 033276 83 PLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~ 101 (123)
.+..||.||.. .++|+++
T Consensus 35 aky~CpfCgk~-~vKR~a~ 52 (103)
T 4a17_Y 35 AKYGCPFCGKV-AVKRAAV 52 (103)
T ss_dssp SCEECTTTCCE-EEEEEET
T ss_pred cCCCCCCCCCc-eeeecCc
Confidence 35678888877 7777763
No 98
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=40.94 E-value=8.9 Score=25.10 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred CccccccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 83 PLVICIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
....||.||.. |+..+++-.-|.|-|
T Consensus 39 g~~~CpYCg~~--------------f~l~~~~~~~~~~~~ 64 (67)
T 2jrr_A 39 GWVECPYCDCK--------------YVLKGSKADALEHHH 64 (67)
T ss_dssp SEEEETTTTEE--------------EEETTSGGGCCSCCC
T ss_pred CeEECCCCCCE--------------EEECCCcchhhhhhc
Confidence 35789999999 888877666666544
No 99
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=40.84 E-value=19 Score=24.10 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=7.6
Q ss_pred cccccCCCC
Q 033276 85 VICIKSNHE 93 (123)
Q Consensus 85 ~fCp~CG~~ 93 (123)
..||.||..
T Consensus 3 M~Cp~Cg~~ 11 (133)
T 3o9x_A 3 MKCPVCHQG 11 (133)
T ss_dssp CBCTTTSSS
T ss_pred cCCCcCCCC
Confidence 579999987
No 100
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=40.46 E-value=9.4 Score=26.48 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=12.6
Q ss_pred CccccccCCCCCeeeEEEE
Q 033276 83 PLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 83 ~~~fCp~CG~~~tl~rV~~ 101 (123)
.+..||.||.. .++|+++
T Consensus 35 ~ky~CpfCgk~-~vkR~a~ 52 (92)
T 3izc_m 35 ARYDCSFCGKK-TVKRGAA 52 (92)
T ss_dssp SCCCCSSSCSS-CCEEEET
T ss_pred cCCcCCCCCCc-eeeeccc
Confidence 35678888877 7777663
No 101
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=40.45 E-value=6.5 Score=38.64 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=20.8
Q ss_pred eeEEeeccccCCccc---ccCccccccCCCCCeeeEE
Q 033276 66 LHRYIVDKCLKLFSS---PFPLVICIKSNHEIRISPV 99 (123)
Q Consensus 66 v~~wvl~rC~gC~k~---~~~~~fCp~CG~~~tl~rV 99 (123)
++.|.- +|++. .....||+.||-+.|..||
T Consensus 53 ~~~~~C----~Cgkyk~~~~~~~~C~~Cgve~t~s~V 85 (1524)
T 2a6h_D 53 IKDYEC----ACGKYKRQRFEGKVCERCGVEVTKSIV 85 (1524)
T ss_dssp SSSSCC----SSCSSCSSTTTTCCCSSSCCCCSSTHH
T ss_pred cccceE----cCccccccCcCCCCCCCCCCccccchH
Confidence 345655 47776 3345799999998877665
No 102
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.16 E-value=9.8 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.0
Q ss_pred ccccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 86 ICIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 86 fCp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
.|..|+.++. +. |...|+.+=|..||+
T Consensus 44 ~C~~C~~~L~--------~~--~~~~~g~~yC~~~y~ 70 (80)
T 2dj7_A 44 KCQTCSVILT--------GE--YISKDGVPYCESDYH 70 (80)
T ss_dssp BCSSSCCBCS--------SC--CEEETTEEECTTHHH
T ss_pred CcCcCCCCcC--------CC--eEEECCEEECHHHHH
Confidence 4778887742 21 567788888888874
No 103
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=39.99 E-value=11 Score=30.18 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=20.8
Q ss_pred EEeeccccCCccc-ccC--------------ccccccCCCCCeeeEEEEEeeE
Q 033276 68 RYIVDKCLKLFSS-PFP--------------LVICIKSNHEIRISPVFMLILI 105 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~~--------------~~fCp~CG~~~tl~rV~~~~~~ 105 (123)
-+.. +|..|.+. +.. ...|| ||+. +|.=-|..|+
T Consensus 152 ~~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~--lrPdVV~FGE 200 (290)
T 3u31_A 152 VFEA-VCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI--FKPNIILFGE 200 (290)
T ss_dssp EEEE-EETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB--EEEEECCBTS
T ss_pred cCcc-eeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE--ECCeEEEcCC
Confidence 3556 99999976 211 23599 9976 4544444444
No 104
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=39.82 E-value=9.6 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=18.2
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
|..|+.++ ..|...|+..||.+-|..||.
T Consensus 96 C~~C~~~L-------~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 96 CVVCKRQL-------ATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp CTTTCCBC-------CTTCEEEECTTSCEEEHHHHH
T ss_pred CCCCCCCC-------CCCCceEEccCCeEECHHHHH
Confidence 55666653 124455677788888877763
No 105
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=39.51 E-value=18 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=19.7
Q ss_pred eeEEeeccccCCccc--------c----cCccccccCCCCC
Q 033276 66 LHRYIVDKCLKLFSS--------P----FPLVICIKSNHEI 94 (123)
Q Consensus 66 v~~wvl~rC~gC~k~--------~----~~~~fCp~CG~~~ 94 (123)
..+|.+ +|+.|+.. + .....||.||.+.
T Consensus 74 ~~r~~~-~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 113 (166)
T 3ir9_A 74 AERVTT-KCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSL 113 (166)
T ss_dssp CEEEEE-EESSSSCEEEEEECCCC--CCCCCCBCTTTCCBE
T ss_pred ceEEEE-ECCCCCceeEEEeecChhhcccccccccccCccc
Confidence 347889 99999842 0 1235799999983
No 106
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=39.20 E-value=13 Score=24.02 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=14.2
Q ss_pred cccCCccc---c--cCccccccCCCC
Q 033276 73 KCLKLFSS---P--FPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~---~--~~~~fCp~CG~~ 93 (123)
+|+.|+.. . .....|+.||..
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~ 35 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLA 35 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcE
Confidence 78888865 1 234678888766
No 107
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=38.22 E-value=11 Score=28.90 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=17.7
Q ss_pred EEeeccccCCccc-cc-------CccccccCCCC
Q 033276 68 RYIVDKCLKLFSS-PF-------PLVICIKSNHE 93 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~-------~~~fCp~CG~~ 93 (123)
-+.. +|..|.+. +. ....||.||+.
T Consensus 119 ~~~~-~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~ 151 (249)
T 1m2k_A 119 LRVV-RCTSCNNSFEVESAPKIPPLPKCDKCGSL 151 (249)
T ss_dssp EEEE-EESSSSCEEECSSCCCSSSCCBCSSSSSB
T ss_pred ccee-EeCCCCCcccchhhccCCCCCCCCCCCCC
Confidence 3455 89999986 21 13579999987
No 108
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=38.08 E-value=17 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=17.2
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
|..|+.++. .|.. |...|+.+-|..||+
T Consensus 39 C~~C~~~L~-------~g~~-f~~~~g~~yC~~cy~ 66 (123)
T 2l3k_A 39 CAACQKHFS-------VGDR-YLLINSDIVCEQDIY 66 (123)
T ss_dssp CTTTCCBCC-------TTCE-EEECSSSEEEGGGHH
T ss_pred cccCCCCCC-------CCCc-EEeeCCEEEcHHHhH
Confidence 677777731 2222 445578888888774
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=37.83 E-value=12 Score=26.43 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=15.3
Q ss_pred cccCCcccccCccccccCCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHEI 94 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~~ 94 (123)
.|.+|.+.-...-+||.||.++
T Consensus 50 hC~~C~~~f~~~a~CPdC~q~L 71 (101)
T 2jne_A 50 RCRSCGEFIEMKALCPDCHQPL 71 (101)
T ss_dssp EETTTCCEEEEEEECTTTCSBC
T ss_pred ECccccchhhccccCcchhhHH
Confidence 4777777622347899999884
No 110
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=37.79 E-value=10 Score=24.07 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=12.7
Q ss_pred cccCCccc--ccCccccccCCCC
Q 033276 73 KCLKLFSS--PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~--~~~~~fCp~CG~~ 93 (123)
.|.||.+. +..+-.||+|++.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~ 39 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV 39 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC
T ss_pred cccccCcccCCCccEECCccCcC
Confidence 47777776 2223457777764
No 111
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.53 E-value=8.2 Score=23.56 Aligned_cols=28 Identities=7% Similarity=0.343 Sum_probs=17.7
Q ss_pred ccccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 86 ICIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 86 fCp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
.|..|+.++.-. . |...||.+=|..||+
T Consensus 41 ~C~~C~~~L~~~--------~-~~~~~g~~yC~~~y~ 68 (77)
T 1g47_A 41 VCAQCFQQFPEG--------L-FYEFEGRKYCEHDFQ 68 (77)
T ss_dssp CCTTTCCCCGGG--------C-SEEETTEEECHHHHH
T ss_pred eECCCCCCCCCC--------C-eEeECCeEeCHHHHH
Confidence 377788774221 1 556788777877763
No 112
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=36.39 E-value=10 Score=31.30 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=17.5
Q ss_pred EEeeccccCCccc-cc----------C---ccccccCCCC
Q 033276 68 RYIVDKCLKLFSS-PF----------P---LVICIKSNHE 93 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~----------~---~~fCp~CG~~ 93 (123)
-+.. +|..|++. +. + .-.||.||+.
T Consensus 142 l~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~ 180 (361)
T 1q14_A 142 FAHC-HCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGEL 180 (361)
T ss_dssp EEEE-EETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCB
T ss_pred cccc-CcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCE
Confidence 3456 89999875 21 1 1479999986
No 113
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.32 E-value=9.8 Score=29.47 Aligned_cols=21 Identities=14% Similarity=0.021 Sum_probs=9.7
Q ss_pred cccCCcccccCccccccCCCC
Q 033276 73 KCLKLFSSPFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~ 93 (123)
.|..|+.+-.....||.|++.
T Consensus 182 ~C~iC~~iv~~g~~C~~C~~~ 202 (238)
T 3nw0_A 182 ICNICHSLLIQGQSCETCGIR 202 (238)
T ss_dssp BCTTTCSBCSSCEECSSSCCE
T ss_pred cCcchhhHHhCCcccCccChH
Confidence 455555551123445555443
No 114
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=36.22 E-value=12 Score=26.87 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=13.2
Q ss_pred eEEEEEeeCCccceeeccc
Q 033276 104 LICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~ 122 (123)
|...|+..||.+-|..||+
T Consensus 160 g~~f~~~~~g~~yC~~cy~ 178 (182)
T 2jtn_A 160 GDEFYLMEDSRLVCKADYE 178 (182)
T ss_dssp TCEEEECTTSCEECHHHHH
T ss_pred CCceEEccCCEEECHHHHH
Confidence 4445666788888887774
No 115
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=36.07 E-value=10 Score=28.24 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=10.8
Q ss_pred cCccccccCCCCC
Q 033276 82 FPLVICIKSNHEI 94 (123)
Q Consensus 82 ~~~~fCp~CG~~~ 94 (123)
..+.||+.||.++
T Consensus 96 ~~r~FC~~CGs~l 108 (196)
T 1x6m_A 96 IQRHRCRDCGVHM 108 (196)
T ss_dssp EEEEEETTTCCEE
T ss_pred eeeEECCCCCCcC
Confidence 4578999999994
No 116
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=35.86 E-value=13 Score=25.31 Aligned_cols=29 Identities=0% Similarity=-0.361 Sum_probs=20.6
Q ss_pred EEeeccccCCccc------c----c----CccccccCCCCCeeeE
Q 033276 68 RYIVDKCLKLFSS------P----F----PLVICIKSNHEIRISP 98 (123)
Q Consensus 68 ~wvl~rC~gC~k~------~----~----~~~fCp~CG~~~tl~r 98 (123)
.-.+ .|.+|... + + -+.|||.|... |+.|
T Consensus 36 ~I~L-~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKH-tlHk 78 (82)
T 1nkw_1 36 IVKM-ESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKH-VVFR 78 (82)
T ss_pred EEEE-EEecCCCeeEEEecCCCCCCcceEEEccCCCCCCe-eeEE
Confidence 4567 99999542 1 1 15799999999 7765
No 117
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.37 E-value=7.5 Score=23.99 Aligned_cols=15 Identities=40% Similarity=0.886 Sum_probs=9.7
Q ss_pred EEeeCCccceeeccc
Q 033276 108 YIQVDTEMPCLLHYH 122 (123)
Q Consensus 108 ~~~~~~~~~~~~~~~ 122 (123)
|...|+.+-|..||+
T Consensus 56 ~~~~~~~~yC~~~y~ 70 (80)
T 1x3h_A 56 FFELDGRPFCELHYH 70 (80)
T ss_dssp CEESSSCEECHHHHH
T ss_pred EEeECCEEECHHHHH
Confidence 445577777777663
No 118
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=34.53 E-value=22 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=20.7
Q ss_pred cCccccc--cCCCCCeeeEEEEEeeEEEEEeeCC-ccceee
Q 033276 82 FPLVICI--KSNHEIRISPVFMLILICLYIQVDT-EMPCLL 119 (123)
Q Consensus 82 ~~~~fCp--~CG~~~tl~rV~~~~~~~~~~~~~~-~~~~~~ 119 (123)
....+|. +||+. -...++-.| ++|||+
T Consensus 57 ~g~I~C~~~~Cg~~-----------WG~~m~yk~~~LP~Lk 86 (121)
T 3lrr_A 57 RAKIFCARQNCSHD-----------WGIHVKYKTFEIPVIK 86 (121)
T ss_dssp EEEEEECSTTTCCE-----------EEEEEEETTEEEEEEC
T ss_pred CcEEEeCccccChh-----------hhheEEeccccCceEE
Confidence 4568899 99998 244667777 899996
No 119
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=34.37 E-value=12 Score=26.14 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=20.5
Q ss_pred eEEeeccccCCccc--ccCccccccCCCCC
Q 033276 67 HRYIVDKCLKLFSS--PFPLVICIKSNHEI 94 (123)
Q Consensus 67 ~~wvl~rC~gC~k~--~~~~~fCp~CG~~~ 94 (123)
+...+ |.-|++. ..-+..|..||.|.
T Consensus 14 KtHtl--CrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 14 KTHTL--CVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp CSEEE--CTTTCSEEEEGGGTEETTTCSSC
T ss_pred Cccce--ecCcCchhhhcccccccccCCch
Confidence 34444 9999987 66788999999883
No 120
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=34.33 E-value=29 Score=28.49 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=18.8
Q ss_pred EeeccccC--Cccc--c--cCccccccCCCC
Q 033276 69 YIVDKCLK--LFSS--P--FPLVICIKSNHE 93 (123)
Q Consensus 69 wvl~rC~g--C~k~--~--~~~~fCp~CG~~ 93 (123)
|.|..|+. |+|. + ...-.|++||..
T Consensus 306 ~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~ 336 (444)
T 4gop_C 306 LYYTACASEGCNKKVNLDHENNWRCEKCDRS 336 (444)
T ss_dssp CEEEECCSTTCCCBEEECTTSCEEETTTTEE
T ss_pred eEEccCCcccCCCccccCCCccEECCCCCCc
Confidence 66769999 9987 3 234689999954
No 121
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=34.07 E-value=22 Score=26.33 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=20.9
Q ss_pred cCccccc--cCCCCCeeeEEEEEeeEEEEEeeCC-ccceee
Q 033276 82 FPLVICI--KSNHEIRISPVFMLILICLYIQVDT-EMPCLL 119 (123)
Q Consensus 82 ~~~~fCp--~CG~~~tl~rV~~~~~~~~~~~~~~-~~~~~~ 119 (123)
..+.+|. +||+. -...++..| |+|||+
T Consensus 79 ~g~I~C~~~~Cg~~-----------WG~~m~yk~~~lP~Lk 108 (145)
T 2qfd_A 79 RAKIFCARQNCSHD-----------WGIHVKYKTFEIPVIK 108 (145)
T ss_dssp EEEEEECSTTTCCE-----------EEEEEEETTEEEEEEC
T ss_pred CceEEeCCcccCcc-----------hhceEEEccccCceEE
Confidence 3478998 99998 244667777 899996
No 122
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=33.12 E-value=12 Score=26.20 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=20.7
Q ss_pred eeEEeeccccCCccc--ccCccccccCCCC
Q 033276 66 LHRYIVDKCLKLFSS--PFPLVICIKSNHE 93 (123)
Q Consensus 66 v~~wvl~rC~gC~k~--~~~~~fCp~CG~~ 93 (123)
-+...+ |.-|++. ..-+..|..||.|
T Consensus 13 ~KtHtl--CrRCG~~syH~qK~~Ca~CGyp 40 (94)
T 4a18_A 13 QKTHTL--CRRCGKATYHKQKLRCAACGYP 40 (94)
T ss_dssp CCCEEE--CTTTCSEEEETTTTEESSSCGG
T ss_pred CCccce--ecCcCchhhhhccccccccCCc
Confidence 345554 9999987 6778899999987
No 123
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=32.34 E-value=49 Score=20.86 Aligned_cols=9 Identities=11% Similarity=0.312 Sum_probs=7.5
Q ss_pred cccccCCCC
Q 033276 85 VICIKSNHE 93 (123)
Q Consensus 85 ~fCp~CG~~ 93 (123)
..||.||+.
T Consensus 3 m~Cp~Cg~~ 11 (78)
T 3ga8_A 3 MKCPVCHQG 11 (78)
T ss_dssp CBCTTTSSS
T ss_pred eECCCCCCC
Confidence 469999987
No 124
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.31 E-value=25 Score=22.80 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=10.9
Q ss_pred cccCCccc-----ccCccccccCCCC
Q 033276 73 KCLKLFSS-----PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-----~~~~~fCp~CG~~ 93 (123)
.|+.|... ...+..||.||..
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~ 52 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQT 52 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCE
T ss_pred ECcCCCchheecCCCCceEeCCCCCc
Confidence 36666653 1223556666654
No 125
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.99 E-value=22 Score=21.88 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=9.5
Q ss_pred EEeeCCccceeecc
Q 033276 108 YIQVDTEMPCLLHY 121 (123)
Q Consensus 108 ~~~~~~~~~~~~~~ 121 (123)
|...|+++=|..||
T Consensus 58 ~~~~~~~~yC~~cy 71 (82)
T 1x63_A 58 FFPKGEDFYCVTCH 71 (82)
T ss_dssp EEEETTEEEEHHHH
T ss_pred cEeeCCEEECHHHH
Confidence 45567777777665
No 126
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=31.58 E-value=18 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=19.8
Q ss_pred eEEeeccccCCccc--ccCccccccCCCC
Q 033276 67 HRYIVDKCLKLFSS--PFPLVICIKSNHE 93 (123)
Q Consensus 67 ~~wvl~rC~gC~k~--~~~~~fCp~CG~~ 93 (123)
+... .|+-|++. ...+.-|-+||.+
T Consensus 14 KtH~--lCrRCG~~sfH~qK~~CgkCGYp 40 (97)
T 2zkr_2 14 KTHT--LCRRCGSKAYHLQKSTCGKCGYP 40 (97)
T ss_dssp CCEE--CCTTTCSSCEETTSCCBTTTCTT
T ss_pred CCCC--cCCCCCCccCcCccccCcccCCc
Confidence 3444 59999986 6678899999976
No 127
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.35 E-value=12 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=19.6
Q ss_pred eeeEEeeccccCCccc-ccCccccccCCCC
Q 033276 65 QLHRYIVDKCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 65 ~v~~wvl~rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
..+.... ||..|.+. ....-.| .||+.
T Consensus 20 ~~k~~~~-RC~~C~kkvgL~~f~C-rCg~~ 47 (74)
T 1wfp_A 20 PPKSTAT-RCLSCNKKVGVTGFKC-RCGST 47 (74)
T ss_dssp CTTCCCC-BCSSSCCBCTTTCEEC-TTSCE
T ss_pred cCcccCc-cchhhcCcccccceEe-ccCCE
Confidence 3345567 99999987 5555678 79876
No 128
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=31.28 E-value=28 Score=18.57 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=17.6
Q ss_pred cccCCccc-ccCccccccCCCC
Q 033276 73 KCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.|+.|-.. +.....|..||.+
T Consensus 8 ~C~~CTf~N~~~~~~Ce~C~~~ 29 (31)
T 1nj3_A 8 ACQHCTFMNQPGTGHCEMCSLP 29 (31)
T ss_dssp ECSSSCCEECSSCSSCSSSCCC
T ss_pred cCCcccccCCCCCCccCCcCCC
Confidence 68889877 6777899999987
No 129
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.06 E-value=16 Score=21.93 Aligned_cols=28 Identities=11% Similarity=0.370 Sum_probs=17.6
Q ss_pred ccccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 86 ICIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 86 fCp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
.|..|+.++.-. . |...|+.+=|..+|+
T Consensus 35 ~C~~C~~~L~~~--------~-~~~~~~~~yC~~cy~ 62 (72)
T 1wyh_A 35 LCSGCEQPLGSR--------S-FVPDKGAHYCVPCYE 62 (72)
T ss_dssp BCTTTCCBTTTS--------C-EEEETTEEEEHHHHH
T ss_pred eECCCCCcCCCC--------c-cCCcCCeEECHHHHH
Confidence 477788774321 1 556688777877763
No 130
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=30.72 E-value=11 Score=24.67 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=18.3
Q ss_pred cccCCccc---c--------cCccccccCCCCCeee
Q 033276 73 KCLKLFSS---P--------FPLVICIKSNHEIRIS 97 (123)
Q Consensus 73 rC~gC~k~---~--------~~~~fCp~CG~~~tl~ 97 (123)
.|.-|+++ + =...||..||..++|+
T Consensus 11 ~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr 46 (62)
T 2a20_A 11 TCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLR 46 (62)
T ss_dssp CCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESS
T ss_pred hhhhhccceeccCCCccccccCCeeecccCCEeeec
Confidence 68888876 2 2368999999996653
No 131
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.71 E-value=22 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=17.3
Q ss_pred EeeccccCCccc-ccCccccccCCCC
Q 033276 69 YIVDKCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 69 wvl~rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
... ||..|.+. ....-.| .||+.
T Consensus 14 ~~~-rC~~C~kkvgl~~f~C-rCg~~ 37 (64)
T 1wg2_A 14 PNN-RCFSCNKKVGVMGFKC-KCGST 37 (64)
T ss_dssp CSC-SCTTTCCCCTTSCEEC-TTSCE
T ss_pred cCC-cChhhCCcccccCeEe-ecCCE
Confidence 346 99999986 5545668 89986
No 132
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.16 E-value=16 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=16.1
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCccceeeccc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHYH 122 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~~ 122 (123)
|..|+.++.. .. |...|+++=|..||.
T Consensus 37 C~~C~~~L~~--------~~-~~~~~~~~yC~~cy~ 63 (81)
T 1a7i_A 37 CMVCRKNLDS--------TT-VAIHDAEVYCKSCYG 63 (81)
T ss_dssp CSSSCCEECS--------SC-CEEETTEEECSHHHH
T ss_pred cCCCCCCCCC--------CC-eEeeCCEEECHHHHH
Confidence 6777766321 11 445588877877763
No 133
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=29.56 E-value=23 Score=28.30 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEeeccccCCccc---c---cCccccccCCCCC
Q 033276 68 RYIVDKCLKLFSS---P---FPLVICIKSNHEI 94 (123)
Q Consensus 68 ~wvl~rC~gC~k~---~---~~~~fCp~CG~~~ 94 (123)
-|. +|..|.+. + .....||+||++.
T Consensus 23 l~~--kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 23 VWT--KCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp CEE--CCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHH--hhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 475 59999987 2 3458999999884
No 134
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.23 E-value=25 Score=22.86 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=17.5
Q ss_pred EEeeccccCCccc-ccCccccccCCCC
Q 033276 68 RYIVDKCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
.... ||..|.+. ....-.| .||+.
T Consensus 13 ~~~~-rC~~C~kkvgl~~f~C-rCg~~ 37 (64)
T 1wfh_A 13 QRPN-RCTVCRKRVGLTGFMC-RCGTT 37 (64)
T ss_dssp SSCC-CCTTTCCCCCTTCEEC-SSSCE
T ss_pred CcCC-cChhhCCccCccCEEe-ecCCE
Confidence 3446 99999986 5545668 69876
No 135
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=28.42 E-value=28 Score=21.27 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=17.0
Q ss_pred cccCCccc-ccCccccccCCCCCe
Q 033276 73 KCLKLFSS-PFPLVICIKSNHEIR 95 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~~t 95 (123)
.|+.|.-. .....-||.|++...
T Consensus 11 ~C~~C~GsG~~i~~~C~~C~G~G~ 34 (53)
T 3lcz_A 11 TCPNCNGSGREEPEPCPKCLGKGV 34 (53)
T ss_dssp ECTTTTTSCEETTEECTTTTTSSE
T ss_pred cCcCCcccccCCCCcCCCCCCcEE
Confidence 78888766 444477999998853
No 136
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=28.02 E-value=18 Score=28.86 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=21.4
Q ss_pred EEeeccccCCccc-cc----------CccccccCCCCCeeeEEEEEeeE
Q 033276 68 RYIVDKCLKLFSS-PF----------PLVICIKSNHEIRISPVFMLILI 105 (123)
Q Consensus 68 ~wvl~rC~gC~k~-~~----------~~~fCp~CG~~~tl~rV~~~~~~ 105 (123)
-+.. +|..|++. +. ..-.||.||+. +|.=-|..|+
T Consensus 137 ~~~~-~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~--lrP~IV~FGE 182 (285)
T 3glr_A 137 FASA-TCTVCQRPFPGEDIRADVMADRVPRCPVCTGV--VKPDIVFFGE 182 (285)
T ss_dssp EEEE-EETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB--EEEEECCTTS
T ss_pred CCeE-EECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc--cCCcEEEeCC
Confidence 3556 99999975 21 12369999976 4443333343
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.74 E-value=20 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=17.2
Q ss_pred ccccCCCCCeeeEEEEEeeEEEEE-eeCCccceeeccc
Q 033276 86 ICIKSNHEIRISPVFMLILICLYI-QVDTEMPCLLHYH 122 (123)
Q Consensus 86 fCp~CG~~~tl~rV~~~~~~~~~~-~~~~~~~~~~~~~ 122 (123)
.|..|+.++.. ...|. ..||.+=|..||+
T Consensus 44 ~C~~C~~~L~~--------~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 44 RCHTCEATLWP--------GGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp BCSSSCCBCCT--------TSEECCTTTCCCEETTTCC
T ss_pred EEcCCCCCcCC--------CceeEeCcCCEEEChHHHH
Confidence 37777776321 11122 3688888888875
No 138
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=27.55 E-value=19 Score=27.30 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=19.1
Q ss_pred cccCCccc--c--cCccccccCCCCCeeeEEEEEe
Q 033276 73 KCLKLFSS--P--FPLVICIKSNHEIRISPVFMLI 103 (123)
Q Consensus 73 rC~gC~k~--~--~~~~fCp~CG~~~tl~rV~~~~ 103 (123)
+|.. +.. + -....||.||+. -.||||-..
T Consensus 171 ~c~~-g~~m~~~~~~~m~cp~cg~~-E~RKva~~~ 203 (209)
T 2nn6_I 171 HSES-GIQMVPISWCEMQCPKTHTK-EFRKVARVQ 203 (209)
T ss_dssp BCSS-SCBCEEEETTEEECTTTTCC-BCCCC----
T ss_pred EcCC-CCEEEEccCCEEECCCCCCE-EeeccCCCC
Confidence 7887 444 2 245789999999 899998553
No 139
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=27.45 E-value=6.1 Score=27.88 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=23.8
Q ss_pred cccCCccc--ccCccccccCCCCCeeeEEEEEeeEEEEE
Q 033276 73 KCLKLFSS--PFPLVICIKSNHEIRISPVFMLILICLYI 109 (123)
Q Consensus 73 rC~gC~k~--~~~~~fCp~CG~~~tl~rV~~~~~~~~~~ 109 (123)
-|.+|... ......||.|..+ +.||......+|||
T Consensus 24 FCydCa~~~~~~~~k~Cp~C~~~--V~rVe~~~~~~if~ 60 (101)
T 3vk6_A 24 FCYDCAILHEKKGDKMCPGCSDP--VQRIEQCTRGSLFM 60 (101)
T ss_dssp EEHHHHHHHHHTTCCBCTTTCCB--CSEEEEEEGGGCCC
T ss_pred HHHHHHHHHHhccCCCCcCcCCe--eeeeEEeccCCEEE
Confidence 37777765 2445789999998 56666555566666
No 140
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=26.84 E-value=20 Score=24.53 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=27.3
Q ss_pred ccCccccccCCCCCeeeEEEEEeeEEEEEee-CCccceeecccC
Q 033276 81 PFPLVICIKSNHEIRISPVFMLILICLYIQV-DTEMPCLLHYHC 123 (123)
Q Consensus 81 ~~~~~fCp~CG~~~tl~rV~~~~~~~~~~~~-~~~~~~~~~~~~ 123 (123)
+..|--|..|+.+ +.+=.+.||.-++... +|.||.-.|..|
T Consensus 22 kS~Ra~Ck~C~~k--I~KgelRig~~v~~~~~~g~~~~W~H~~C 63 (106)
T 2dmj_A 22 KSGRASCKKCSES--IPKDSLRMAIMVQSPMFDGKVPHWYHFSC 63 (106)
T ss_dssp CSSCCBCSSSCCB--CCTTCEEEEEEEEETTTTEEEEEEEETTH
T ss_pred CCCCCcchhhCCc--cCCCCEEEEEEecCCCCCCCcCEeECcCc
Confidence 5667788888866 4445556666555432 567888888776
No 141
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=26.61 E-value=28 Score=21.39 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=14.8
Q ss_pred cccCCccc-ccCccccccCC
Q 033276 73 KCLKLFSS-PFPLVICIKSN 91 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG 91 (123)
+|+.|.+. ++....|..|=
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTC
T ss_pred ecccccccCCCccchhhHHH
Confidence 68999987 55568898884
No 142
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=26.44 E-value=54 Score=27.74 Aligned_cols=32 Identities=28% Similarity=0.149 Sum_probs=23.6
Q ss_pred EeeccccCCccc-c----cCccccccCCCCCeeeEEEE
Q 033276 69 YIVDKCLKLFSS-P----FPLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 69 wvl~rC~gC~k~-~----~~~~fCp~CG~~~tl~rV~~ 101 (123)
-++ .|..|+.. . .....|+.|++...+.+|.+
T Consensus 4 ~~~-VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~i 40 (436)
T 3qqc_A 4 EVW-VCENCGHIALEDKRRRRVYCPVCGEEERISKVEM 40 (436)
T ss_dssp EEE-EETTTCCBCEEETTTTEEECTTTCCSSSEEEEEE
T ss_pred EEE-EeCCCCceeeeccccCccCCCCCCCCCeEEEEEc
Confidence 355 89999986 2 12468999998877888764
No 143
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=25.75 E-value=36 Score=20.94 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=15.1
Q ss_pred cccCCccc---ccCccccc--cCCCC
Q 033276 73 KCLKLFSS---PFPLVICI--KSNHE 93 (123)
Q Consensus 73 rC~gC~k~---~~~~~fCp--~CG~~ 93 (123)
+|+.|+.. +.....|+ .||..
T Consensus 12 ~CP~c~~~L~~~~~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 12 ACPACHAPLEERDAELICTGQDCGLA 37 (56)
T ss_dssp CCSSSCSCEEEETTEEEECSSSCCCE
T ss_pred eCCCCCCcceecCCEEEcCCcCCCcE
Confidence 78888865 34556788 78766
No 144
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.85 E-value=24 Score=28.59 Aligned_cols=13 Identities=8% Similarity=0.304 Sum_probs=9.3
Q ss_pred ccccccCCCCCeee
Q 033276 84 LVICIKSNHEIRIS 97 (123)
Q Consensus 84 ~~fCp~CG~~~tl~ 97 (123)
-.+||.||+. .|.
T Consensus 34 n~yCPnCG~~-~l~ 46 (257)
T 4esj_A 34 QSYCPNCGNN-PLN 46 (257)
T ss_dssp HCCCTTTCCS-SCE
T ss_pred CCcCCCCCCh-hhh
Confidence 3679999986 453
No 145
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.71 E-value=44 Score=19.73 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=17.6
Q ss_pred ccc--CCccc-ccCccccccCCCC
Q 033276 73 KCL--KLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~--gC~k~-~~~~~fCp~CG~~ 93 (123)
.|. +|+.. ...+..|-.||.+
T Consensus 16 ~C~~~~C~~~Nfa~R~~C~~C~~p 39 (45)
T 1n0z_A 16 ICPDKKCGNVNFARRTSCDRCGRE 39 (45)
T ss_dssp BCSSTTTCCBCCSSCSBCSSSCCB
T ss_pred CCCCCCCCCEEccccccccccCCc
Confidence 688 89988 6678999999987
No 146
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=24.69 E-value=24 Score=26.26 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=5.4
Q ss_pred cccccCCCC
Q 033276 85 VICIKSNHE 93 (123)
Q Consensus 85 ~fCp~CG~~ 93 (123)
..||+||++
T Consensus 138 ~~Cp~C~~~ 146 (178)
T 3po3_S 138 FTCGKCKEK 146 (178)
T ss_dssp SCCSSSCCS
T ss_pred cCCCCCCCC
Confidence 346666665
No 147
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=23.63 E-value=82 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=18.0
Q ss_pred EeeccccC--Cccc--c--cCccccccCCCC
Q 033276 69 YIVDKCLK--LFSS--P--FPLVICIKSNHE 93 (123)
Q Consensus 69 wvl~rC~g--C~k~--~--~~~~fCp~CG~~ 93 (123)
|.|..|+. |.|. + ...-.|++||..
T Consensus 41 ~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~ 71 (181)
T 1l1o_C 41 CMYQACPTQDCNKKVIDQQNGLYRCEKCDTE 71 (181)
T ss_dssp TEEEBCCSTTCCCBCEEETTTEEEETTTTEE
T ss_pred EEECCCCchhcCCccccCCCCeEECCCCCCc
Confidence 44669999 9986 2 234579999854
No 148
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=23.63 E-value=22 Score=19.99 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=13.3
Q ss_pred ccCCccc-ccCccccccCCCCC
Q 033276 74 CLKLFSS-PFPLVICIKSNHEI 94 (123)
Q Consensus 74 C~gC~k~-~~~~~fCp~CG~~~ 94 (123)
|..|... -.....||.|..++
T Consensus 32 ~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 32 HAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CTTHHHHTTTTCCSCSSSCCCS
T ss_pred cHHHHHHHHHcCCcCcCCCCEe
Confidence 5556554 23356799998774
No 149
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=23.62 E-value=10 Score=26.80 Aligned_cols=20 Identities=15% Similarity=0.143 Sum_probs=10.7
Q ss_pred ccCCccc-ccCccccccCCCC
Q 033276 74 CLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 74 C~gC~k~-~~~~~fCp~CG~~ 93 (123)
|..|-.. -..-++||+|+.+
T Consensus 50 Cl~CLtlmL~~SdrCpIC~~p 70 (99)
T 2ko5_A 50 CLNCLTLLLSVSNRCPICKMP 70 (99)
T ss_dssp EHHHHHHTCSSSSEETTTTEE
T ss_pred HHHHHHHHHhhccCCcccCCc
Confidence 4444444 2223667777766
No 150
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.09 E-value=67 Score=19.30 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=6.8
Q ss_pred EEeeCCccceeecc
Q 033276 108 YIQVDTEMPCLLHY 121 (123)
Q Consensus 108 ~~~~~~~~~~~~~~ 121 (123)
|...|+.+=|..+|
T Consensus 61 f~~~~~~~yC~~cy 74 (77)
T 2egq_A 61 FVFHQEQVYCPDCA 74 (77)
T ss_dssp CCEETTEECCHHHH
T ss_pred cEeECCEEEChHHh
Confidence 33445555555444
No 151
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=22.53 E-value=49 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=21.0
Q ss_pred cCccccc--cCCCCCeeeEEEEEeeEEEEEeeCC-c-cceeec
Q 033276 82 FPLVICI--KSNHEIRISPVFMLILICLYIQVDT-E-MPCLLH 120 (123)
Q Consensus 82 ~~~~fCp--~CG~~~tl~rV~~~~~~~~~~~~~~-~-~~~~~~ 120 (123)
..+.+|. +||+. -...++-.| + +|||+-
T Consensus 59 ~g~I~C~~~~Cg~~-----------WG~~m~yk~~~~LP~LkI 90 (131)
T 4a2v_A 59 KSKMYCRNNNCQHD-----------WGITVKYLTFDNLPVIKI 90 (131)
T ss_dssp EEEEEESCTTTCCE-----------EEEEEEETTEEEEEEECG
T ss_pred CcEEEeCccccChh-----------hhhhEeecCcccCceEeE
Confidence 4568899 99998 244667777 7 999973
No 152
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=27 Score=26.00 Aligned_cols=12 Identities=8% Similarity=0.545 Sum_probs=6.4
Q ss_pred eEEeeccccCCccc
Q 033276 67 HRYIVDKCLKLFSS 80 (123)
Q Consensus 67 ~~wvl~rC~gC~k~ 80 (123)
+.||+ |+.|+.+
T Consensus 101 ~~YVl--C~~C~sP 112 (157)
T 2e9h_A 101 KKFVL--CPECENP 112 (157)
T ss_dssp HHTTS--CTTTCCS
T ss_pred HHeEE--CCCCCCC
Confidence 34444 6666655
No 153
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.23 E-value=25 Score=20.95 Aligned_cols=26 Identities=15% Similarity=0.460 Sum_probs=16.4
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCccceeecc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCLLHY 121 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~~~~ 121 (123)
|..|+.++. +.. |...|+.+-|..+|
T Consensus 34 C~~C~~~L~--------~~~-~~~~~~~~yC~~cy 59 (69)
T 2cur_A 34 CVTCSKKLA--------GQR-FTAVEDQYYCVDCY 59 (69)
T ss_dssp CTTTCCBCT--------TSC-EEECSSCEEEHHHH
T ss_pred ECCCCCCCC--------CCc-cEeECCEEECHHHh
Confidence 677777742 222 55567888787766
No 154
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.18 E-value=40 Score=21.29 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=14.1
Q ss_pred cccCCccc-ccCccccccCC
Q 033276 73 KCLKLFSS-PFPLVICIKSN 91 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG 91 (123)
+|+.|.+. ++...+|..|=
T Consensus 13 kC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTC
T ss_pred ecccccccCCCccchhHHHH
Confidence 68889887 44457888884
No 155
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=21.96 E-value=21 Score=25.93 Aligned_cols=28 Identities=11% Similarity=0.422 Sum_probs=17.6
Q ss_pred eeEEeeccccCCcccc--------cCccccccCCCCCe
Q 033276 66 LHRYIVDKCLKLFSSP--------FPLVICIKSNHEIR 95 (123)
Q Consensus 66 v~~wvl~rC~gC~k~~--------~~~~fCp~CG~~~t 95 (123)
++.|++ |+.|+.++ .-..-|..||+...
T Consensus 99 I~~yVl--C~~C~sPdT~l~k~~r~~~l~C~ACGa~~~ 134 (138)
T 1nee_A 99 VNKFVI--CHECNRPDTRIIREGRISLLKCEACGAKAP 134 (138)
T ss_dssp HTHHHH--HTCCSSCSSCCEEETTTTEEECSTTSCCCC
T ss_pred HhhEEE--CCCCCCcCcEEEEcCCeEEEEccCCCCCcc
Confidence 445555 88888762 12356888887743
No 156
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.81 E-value=14 Score=25.84 Aligned_cols=21 Identities=10% Similarity=0.154 Sum_probs=15.2
Q ss_pred cccCCccc--ccCccccccCCCC
Q 033276 73 KCLKLFSS--PFPLVICIKSNHE 93 (123)
Q Consensus 73 rC~gC~k~--~~~~~fCp~CG~~ 93 (123)
.|..|+.. ....+-||.|+.+
T Consensus 45 vCrpCyEYErkeG~q~CpqCktr 67 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTR 67 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCC
T ss_pred hhHHHHHHHHhccCccccccCCc
Confidence 46666655 4556899999988
No 157
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.80 E-value=46 Score=22.62 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=17.8
Q ss_pred eEEeeccccCCccc-cc-CccccccCCCC
Q 033276 67 HRYIVDKCLKLFSS-PF-PLVICIKSNHE 93 (123)
Q Consensus 67 ~~wvl~rC~gC~k~-~~-~~~fCp~CG~~ 93 (123)
++... ||..|++. .. ..-.|. ||+.
T Consensus 22 k~~~~-rC~~C~kkvgl~~~f~Cr-Cg~~ 48 (85)
T 1wff_A 22 KKIMK-HCFLCGKKTGLATSFECR-CGNN 48 (85)
T ss_dssp CCCCC-BCSSSCCBCSSSSCEECT-TCCE
T ss_pred cccCc-cchhhCCeecccCCeEcC-CCCE
Confidence 45567 99999987 44 246684 8876
No 158
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.72 E-value=23 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=16.9
Q ss_pred eeEEeeccccCCcccc--------cCccccccCCCCC
Q 033276 66 LHRYIVDKCLKLFSSP--------FPLVICIKSNHEI 94 (123)
Q Consensus 66 v~~wvl~rC~gC~k~~--------~~~~fCp~CG~~~ 94 (123)
++.|++ |+.|+.++ .-..-|..||+..
T Consensus 101 I~~yVl--C~~C~sPdT~L~k~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 101 IKEYVI--CPVCGSPDTKIIKRDRFHFLKCEACGAET 135 (148)
T ss_dssp HHHHSS--CSSSCCTTCCCCBSSSSBCCCCSSSCCCC
T ss_pred HHHEEE--CCCCCCcCcEEEEeCCEEEEEecCCCCCc
Confidence 445655 88888761 1134588888764
No 159
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.54 E-value=41 Score=26.15 Aligned_cols=10 Identities=20% Similarity=0.288 Sum_probs=6.8
Q ss_pred cccccCCCCC
Q 033276 85 VICIKSNHEI 94 (123)
Q Consensus 85 ~fCp~CG~~~ 94 (123)
+-||.||.++
T Consensus 235 ~pC~~CG~~I 244 (262)
T 1k3x_A 235 EPCERCGSII 244 (262)
T ss_dssp SBCTTTCCBC
T ss_pred CCCCCCCCEe
Confidence 4577777774
No 160
>1chl_A Chlorotoxin; neurotoxin; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 1sis_A
Probab=21.09 E-value=16 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=14.4
Q ss_pred cccCCccc-ccCccccccC-CCC
Q 033276 73 KCLKLFSS-PFPLVICIKS-NHE 93 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~C-G~~ 93 (123)
+|..||++ +.....|..| |++
T Consensus 1 ~C~PCfttdp~m~~kC~~CCGg~ 23 (36)
T 1chl_A 1 MCMPCFTTDHQMARKCDDCCGGK 23 (36)
T ss_dssp CBSCSCSCSSSSHHHHHHHHTSS
T ss_pred CCCCCcCCChhHHHHHHHHhCCC
Confidence 58999998 4445678775 443
No 161
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.08 E-value=39 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.064 Sum_probs=17.0
Q ss_pred EeeccccCCccc-ccCccccccCCCC
Q 033276 69 YIVDKCLKLFSS-PFPLVICIKSNHE 93 (123)
Q Consensus 69 wvl~rC~gC~k~-~~~~~fCp~CG~~ 93 (123)
... ||..|.+. ......|. ||+.
T Consensus 24 ~~n-RC~~CrKkvgL~gf~Cr-Cg~~ 47 (74)
T 1wfl_A 24 KKN-RCFMCRKKVGLTGFDCR-CGNL 47 (74)
T ss_dssp CTT-BCSSSCCBCGGGCEECT-TSCE
T ss_pred cCC-cChhhCCcccccCeecC-CCCE
Confidence 456 99999986 44446688 9865
No 162
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=9.3 Score=22.73 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=12.7
Q ss_pred ccCCccc--ccCccccccCCCCCe
Q 033276 74 CLKLFSS--PFPLVICIKSNHEIR 95 (123)
Q Consensus 74 C~gC~k~--~~~~~fCp~CG~~~t 95 (123)
|..|... ......||.|..+++
T Consensus 38 C~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 38 CESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred HHHHHHHHHHhCcCCCCCCCcCCC
Confidence 4455443 233456888888754
No 163
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.07 E-value=14 Score=21.91 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=10.7
Q ss_pred ccccccCCCCCeeeE
Q 033276 84 LVICIKSNHEIRISP 98 (123)
Q Consensus 84 ~~fCp~CG~~~tl~r 98 (123)
...||.|+.+++...
T Consensus 43 ~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 43 AGNCPECGTPLRKSN 57 (65)
T ss_dssp SSSCTTTCCCCSSCC
T ss_pred CCcCCCCCCcccccc
Confidence 456999999865443
No 164
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=20.96 E-value=33 Score=21.23 Aligned_cols=17 Identities=6% Similarity=-0.283 Sum_probs=9.1
Q ss_pred cccCCcccccCcccccc
Q 033276 73 KCLKLFSSPFPLVICIK 89 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~ 89 (123)
.|+.|++...+...||.
T Consensus 29 ~c~~cGe~~l~H~vc~~ 45 (56)
T 3r8s_0 29 VDKTSGEKHLRHHITAD 45 (56)
T ss_dssp ECTTTCCEEETTBCCTT
T ss_pred ECCCCCCeecccEECCC
Confidence 46666655334455555
No 165
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.67 E-value=32 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=15.6
Q ss_pred cccCCCCCeeeEEEEEeeEEEEEeeCCcccee-ecc
Q 033276 87 CIKSNHEIRISPVFMLILICLYIQVDTEMPCL-LHY 121 (123)
Q Consensus 87 Cp~CG~~~tl~rV~~~~~~~~~~~~~~~~~~~-~~~ 121 (123)
|..|+.++.-. . |...|+.+=|. .||
T Consensus 39 C~~C~~~L~~~--------~-~~~~~g~~yC~~~cy 65 (76)
T 2cu8_A 39 CERCSKTLTPG--------G-HAEHDGKPFCHKPCY 65 (76)
T ss_dssp CSSSCCBCCTT--------S-CEEETTEEECTTTHH
T ss_pred CCCCCCccCCC--------c-eEeECCEEecchHHH
Confidence 67777774321 1 44567777777 466
No 166
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=20.50 E-value=1.3e+02 Score=21.15 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCCceeEEecccH----HHHHHHHHhCce
Q 033276 30 LSESTVACITGDY----AMQNVILQMGLR 54 (123)
Q Consensus 30 ~~~~~va~vTdDy----AmQNVllqlGL~ 54 (123)
+..+++.+++++| .||.+++.+|..
T Consensus 34 L~~sPa~lv~~e~g~s~~Merimka~~~~ 62 (126)
T 1sf8_A 34 LTDTPAIVSTDADEMSTQMAKLFAAAGQK 62 (126)
T ss_dssp CSSCCEEEECCTTSCCHHHHHHHHTTTSC
T ss_pred ccCCCEEEEecCcccCHHHHHHHHHhccc
Confidence 3567788889888 999999999864
No 167
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.49 E-value=14 Score=26.54 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=14.6
Q ss_pred cccCCcccccCc----cccccCCC
Q 033276 73 KCLKLFSSPFPL----VICIKSNH 92 (123)
Q Consensus 73 rC~gC~k~~~~~----~fCp~CG~ 92 (123)
.|..|..+.+.. .-||+||+
T Consensus 18 AC~~C~~V~t~~qF~~~gCpnC~~ 41 (120)
T 3h7h_A 18 ACLLCSLVKTIDQFEYDGCDNCDA 41 (120)
T ss_dssp EETTTCBEEEHHHHHHHCCTTTHH
T ss_pred eeccCCceechhhccCCCCCCCcc
Confidence 799999882222 34999995
No 168
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=20.46 E-value=58 Score=22.52 Aligned_cols=29 Identities=3% Similarity=-0.211 Sum_probs=21.0
Q ss_pred cccCCcccccCccccccCCCCCeeeEEEE
Q 033276 73 KCLKLFSSPFPLVICIKSNHEIRISPVFM 101 (123)
Q Consensus 73 rC~gC~k~~~~~~fCp~CG~~~tl~rV~~ 101 (123)
.-..|+..-.+...|..||.+++-+-|.+
T Consensus 115 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 143 (146)
T 2f2e_A 115 VERDSGQPVPRLQVRAGDGSPLAAEDTRV 143 (146)
T ss_dssp EETTTCCBCCCCCCBCTTSCBCCGGGEEE
T ss_pred eeCCCCCCCCceEEECCCcCCCCHHHeee
Confidence 55688887334588999999977665553
No 169
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.33 E-value=53 Score=21.73 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=6.1
Q ss_pred EEeeCCccceeecc
Q 033276 108 YIQVDTEMPCLLHY 121 (123)
Q Consensus 108 ~~~~~~~~~~~~~~ 121 (123)
|...||.+=|..+|
T Consensus 45 f~~~~g~~yC~~cy 58 (126)
T 2xqn_T 45 YVMVNDKPVCKPCY 58 (126)
T ss_dssp EEEETTEEEEHHHH
T ss_pred EEeECCEEechHHh
Confidence 33344444444443
No 170
>3iz5_r 60S ribosomal protein L42 (L44E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_r 2zkr_4 3izc_r 3izs_r 3o58_f 3o5h_f 3u5e_o 3u5i_o 4b6a_o 1s1i_Z 3j0o_F 3j0l_F 3jyw_Z
Probab=20.19 E-value=53 Score=23.13 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=14.2
Q ss_pred cccc--ccCCCCCeeeEEE
Q 033276 84 LVIC--IKSNHEIRISPVF 100 (123)
Q Consensus 84 ~~fC--p~CG~~~tl~rV~ 100 (123)
+-|| |.|+.. |..+|+
T Consensus 9 ~tyC~~p~C~kH-t~HkVt 26 (105)
T 3iz5_r 9 KTYCKNKECRKH-TLHKVT 26 (105)
T ss_dssp EECCCSTTTCSC-EEEEEE
T ss_pred eeccCCCCCCCC-ccEEEE
Confidence 5799 899999 899887
No 171
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=20.06 E-value=57 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=17.5
Q ss_pred eeccccCCccc---c----cCccccccCCCCC
Q 033276 70 IVDKCLKLFSS---P----FPLVICIKSNHEI 94 (123)
Q Consensus 70 vl~rC~gC~k~---~----~~~~fCp~CG~~~ 94 (123)
.. .|++|++. + .....|..||.++
T Consensus 5 ~~-~c~~c~~~n~~p~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 5 NT-VCTACMATNRLPEERIDDGAKCGRCGHSL 35 (148)
T ss_dssp EE-ECTTTCCEEEEESSCSCSCCBCTTTCCBT
T ss_pred EE-ECcccccccCCCCcccccCCcchhcCCcc
Confidence 45 89999986 1 2345699999884
No 172
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=20.02 E-value=51 Score=20.06 Aligned_cols=24 Identities=17% Similarity=0.103 Sum_probs=15.5
Q ss_pred cccCCccc-ccCccccccCCCCCee
Q 033276 73 KCLKLFSS-PFPLVICIKSNHEIRI 96 (123)
Q Consensus 73 rC~gC~k~-~~~~~fCp~CG~~~tl 96 (123)
.|+.|.=. .....-||.|+.....
T Consensus 11 ~C~~C~GsG~~~~~~C~~C~G~G~v 35 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEETTEECTTTTTSSEE
T ss_pred cCCCCcceeccCCCCCccCCCCccE
Confidence 56666655 2234679999988533
Done!