BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033278
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
 pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
           Dehydrogenase
          Length = 256

 Score = 25.0 bits (53), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 16  VDAILRIGTAGAIWGLCAGPQLARKRGLSG 45
           VD +  I   G IWG+ A  +  +K G  G
Sbjct: 103 VDKVYNINVKGVIWGIQAAVEAFKKEGHGG 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,696,763
Number of Sequences: 62578
Number of extensions: 69590
Number of successful extensions: 111
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 2
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)