BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033278
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
thaliana GN=OEP164 PE=2 SV=1
Length = 136
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 105/129 (81%), Gaps = 7/129 (5%)
Query: 1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIG--- 57
MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG
Sbjct: 1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60
Query: 58 ----LVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 113
LV+GVF+ T CG+QRYR +NDWVNAL+ GAV GAA+A TR WTQV+G+AG+VSAF
Sbjct: 61 FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120
Query: 114 SAAADYSRT 122
S A+ +RT
Sbjct: 121 SVLANCTRT 129
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 40 KRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 99
+RG+S AK+ +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 120 QRGMS-------YAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGL 172
Query: 100 WTQVIGVAGIVSAFSAAADY 119
VIG G +AFSAA DY
Sbjct: 173 KAGVIGCGGF-AAFSAAIDY 191
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 40 KRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 99
+RG+S AK+ +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 118 QRGMS-------YAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGV 170
Query: 100 WTQVIGVAGIVSAFSAAADY 119
IG G +AFSAA DY
Sbjct: 171 KAGAIGCGGF-AAFSAAIDY 189
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 40 KRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 99
+RG+S AK+ +V +FS T C I+ YR +DW N++I+G +TG AI
Sbjct: 120 QRGMS-------YAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGL 172
Query: 100 WTQVIGVAGIVSAFSAAADY 119
IG G +AFSAA DY
Sbjct: 173 KAGAIGCGGF-AAFSAAIDY 191
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 40 KRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 99
+RG+S AK+ +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 120 QRGMS-------YAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGV 172
Query: 100 WTQVIGVAGIVSAFSAAADY 119
IG G +AFSAA DY
Sbjct: 173 KAGAIGCGGF-AAFSAAIDY 191
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
R AK+ +V +FS T C ++ YR ++DW N++++G +TG AI V+G
Sbjct: 111 RGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGLKAGVLGCG 170
Query: 108 GIVSAFSAAADY 119
G +AFSA DY
Sbjct: 171 GF-AAFSAVIDY 181
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
RA AK+ G + GVFS T C I+ R +ND N + AG +TG +A ++G A
Sbjct: 99 RAWSSAKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGPQAALVGCA 158
Query: 108 GIVSAFSAAAD-YSRTN 123
G +AFSAA D Y R++
Sbjct: 159 GF-AAFSAAIDVYMRSD 174
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
R AK+ +V +FS T C ++ YR ++DW N++I+G +TG AI +G
Sbjct: 113 RGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLKAGALGCG 172
Query: 108 GIVSAFSAAADY 119
G +AFSA DY
Sbjct: 173 GF-AAFSAVIDY 183
>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis
thaliana GN=OEP161 PE=1 SV=1
Length = 148
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSI-------GLVAGV 62
P +L VDA L+IG G L A +G + K + G GV
Sbjct: 24 PFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGV 83
Query: 63 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIV 110
+ T GI+R R DW NA++AGA TGA ++A ++ I + I+
Sbjct: 84 YIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAIL 131
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 40 KRGLSGITRASF-VAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTR 98
K G + + S+ AK+ V +FS CGI+ R +ND N + AG +TGA +A
Sbjct: 106 KHGFKDMGQRSYSTAKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGAILAKNGG 165
Query: 99 RWTQVIGVAGIVSAFSAAAD 118
+G AG +AFSAA D
Sbjct: 166 PQAAAVGCAGF-AAFSAAID 184
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
RA AK+ G + +++ C ++ R +ND N + AG +TG +A + ++G A
Sbjct: 107 RAYSSAKNFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGGLAYKSGPQAALVGCA 166
Query: 108 GIVSAFSAAAD 118
G +AFSAA D
Sbjct: 167 GF-AAFSAAID 176
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
RA AK+ G + ++S C I+ R +ND N + AG +TG +A + +IG A
Sbjct: 115 RAYSSAKNFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGLAYKSGPSAALIGCA 174
Query: 108 GIVSAFSAAAD-YSRTN 123
G +AFS A D Y R+
Sbjct: 175 GF-AAFSTAIDLYMRSE 190
>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum
GN=OEP16 PE=1 SV=1
Length = 146
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 10 PCSSLAVDAILRIGTAGAIWGLCAGP-QLARKRGLSGITRASFVAKSI------GLVAGV 62
P +L VD L+IG A + + RK +S + K G +AGV
Sbjct: 24 PFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGV 83
Query: 63 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGV 106
+ G++R R DW NA+ GAVTGA ++A + I V
Sbjct: 84 YVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKKDKIAV 127
>sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim23 PE=3 SV=1
Length = 210
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 1 MEEELIDAVPCSSLAV-------DAILRIGTA-------GAIWGLCAGPQLA-------- 38
+EE+ + +P S+A+ D GT+ G +WGL G +
Sbjct: 59 IEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRL 118
Query: 39 RKRG-LSGITR-ASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGA 91
R G L+G+TR FV S+G++A V++ I R+++ W N++ AGA+TGA
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGA 173
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107
R+ AK+ G + ++S C ++ R +ND N + AG +TG +A + ++G A
Sbjct: 110 RSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGLAYKSGPQAALVGCA 169
Query: 108 GIVSAFSAAADYSRTN 123
G +AFS A D N
Sbjct: 170 GF-AAFSTAIDLYMRN 184
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 53 AKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSA 112
AK+ G + V+S C I+ R ++D N + AG +TG +A ++G AG +A
Sbjct: 101 AKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAGPQAALVGCAGF-AA 159
Query: 113 FSAAAD-YSRTN 123
FS A D Y R++
Sbjct: 160 FSTAIDLYLRSD 171
>sp|P87146|TIM22_SCHPO Mitochondrial import inner membrane translocase subunit tim22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim22 PE=3 SV=1
Length = 175
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 47 TRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGV 106
+R+ AK+ GL+ ++S + C I+ +R + D NA+ AG TG A+A + V+G
Sbjct: 98 SRSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGG 157
Query: 107 AGI 109
AG
Sbjct: 158 AGF 160
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 10 PCSSLAVD---AILRIGT-AGAIWGLCAG---PQLARKRGLSGI----TRASFVAKSIGL 58
PC + ++ A +GT GAIW G KR +S I TRA + + G+
Sbjct: 10 PCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPGEKR-ISAIAAAKTRAPVLGGNFGV 68
Query: 59 VAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA-GTRRWTQ--VIGVAGIVSAFS 114
G+FS+ C ++ R++ D NA+IAG TG A+A G R T+ IG A I++ F
Sbjct: 69 WGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCACILAVFE 127
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 40 KRGLSGI-TRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTG 90
+RG + +R+ AK+ G+V ++S T C ++ R +ND N++I+G +TG
Sbjct: 97 RRGFKDMGSRSWSSAKNFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM17 PE=1 SV=1
Length = 158
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
RA + + G+ G+FS+ C ++ RK+ D NA+IAG TG A+A
Sbjct: 57 RAPVLGGNFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALA 103
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Homo sapiens GN=TIMM17B PE=1 SV=1
Length = 172
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
RA + S + G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 58 RAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAA 105
>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Bos taurus GN=TIMM17B PE=2 SV=1
Length = 172
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
RA + S + G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 58 RAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAA 105
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Mus musculus GN=Timm17b PE=2 SV=1
Length = 172
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
RA + S + G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 58 RAPQIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAA 105
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 54 KSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVS 111
K+ ++ VFS+ C +++ R ++D VN IAG VTG +++A IG AG +
Sbjct: 103 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGFAT 160
>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2
OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1
Length = 210
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 26 GAIWGLCAGPQLARKRGLSG-ITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALI 84
G+I+G +G L +K+G G A AK+ +++GV S C +++ R ++D +N +
Sbjct: 62 GSIFGYGSG--LFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGV 119
Query: 85 AGAVTGAAIA 94
AG TG A++
Sbjct: 120 AGCCTGLALS 129
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Rattus norvegicus GN=Timm17a PE=2 SV=1
Length = 171
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 47 TRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
TRA + S + G+FS+ CG+ + R + D N++ +GA+TGA +AA
Sbjct: 57 TRAPQLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAA 105
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 39 RKRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
+++G SG+ A KS+ ++ V++ T C I++ R + D +N + AG TGA A
Sbjct: 98 KEQGRSGLRSA----KSLSIITLVYTGTECAIEKARGRTDKLNPIYAGCTTGAVFA 149
>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3
OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1
Length = 214
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 26 GAIWGLCAGPQLARKRGLSGITRASFV-----AKSIGLVAGVFSSTRCGIQRYRKQNDWV 80
G+++G +G L +K+G G SFV AK+ +++GV S C +++ R ++D +
Sbjct: 62 GSVFGYGSG--LFKKKGFKG----SFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAI 115
Query: 81 NALIAGAVTGAAIA 94
N +AG TG A++
Sbjct: 116 NVGVAGCCTGLALS 129
>sp|Q0WMZ5|OP162_ARATH Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis
thaliana GN=OEP162 PE=1 SV=1
Length = 178
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 57 GLVAGVFSSTRCGIQRYRK-QNDWVNALIAGAVTGAAIAAGTRRWT---QVIGVAGIVSA 112
GL AG++S G+ R +DW N+ +AGA+TGAA+A T T QV+ A +A
Sbjct: 107 GLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMTTSERTSHEQVVQSALTGAA 166
Query: 113 FSAAAD 118
S AA+
Sbjct: 167 ISTAAN 172
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 54 KSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGI 109
K+ ++ VFS+ C +++ R ++D VN IAG VTG +++A IG AG
Sbjct: 72 KTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGCAGF 127
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 59 VAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA--AGTRRWTQVIGVAGIVSAFSAA 116
V V+S C I+ YR +ND N + AG +TGA +A AG T ++G +AFS A
Sbjct: 118 VGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP---TAMLGGGVAFAAFSGA 174
Query: 117 ADY 119
D+
Sbjct: 175 IDW 177
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 59 VAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA--AGTRRWTQVIGVAGIVSAFSAA 116
V V+S C I+ YR +ND N + AG +TGA +A AG T ++G +AFS A
Sbjct: 118 VGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP---TAMLGGGVAFAAFSGA 174
Query: 117 ADY 119
D+
Sbjct: 175 IDW 177
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 53 AKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
AK+ G + +++ C I+ R +ND N + AG TGA +A
Sbjct: 126 AKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLA 167
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Mus musculus GN=Timm17a PE=2 SV=1
Length = 171
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 47 TRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
TRA + S + G+FS+ C + + R + D N++ +GA+TGA +AA
Sbjct: 57 TRAPQLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAA 105
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2
Length = 179
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 97
R+ V + + FS+ C + +RK+ D NA+I+GA TG +AA T
Sbjct: 58 RSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAART 107
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1
Length = 224
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 40 KRGLSG-----ITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
+RGL G R +A S + FS+ C + YR++ D NA+++GA TG +A
Sbjct: 44 RRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILA 103
Query: 95 A 95
A
Sbjct: 104 A 104
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Homo sapiens GN=TIMM17A PE=1 SV=1
Length = 171
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 47 TRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
TRA + S + G+FS C + + R + D N++ +GA+TGA +AA
Sbjct: 57 TRAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAA 105
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1
Length = 222
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95
R +A S + FS+ C + YR++ D N++++GA TG +AA
Sbjct: 57 RTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAA 104
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1
Length = 181
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 61 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
G+FS+ C + RK+ D +N++++G +TGA +A
Sbjct: 69 GMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLA 102
>sp|Q8IN78|TIM22_DROME Mitochondrial import inner membrane translocase subunit Tim22
OS=Drosophila melanogaster GN=Tim22 PE=2 SV=1
Length = 195
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 36 QLARK--RGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAI 93
Q AR+ R + T + AK+ L+ VFS+ C I+ +R DW N AG +TG I
Sbjct: 108 QTAREVFREMRSTTHS--YAKNFALIGCVFSAVECTIESHRGVTDWKNGTYAGGITGGLI 165
Query: 94 AAGTRRWTQVIGVAGIVSAFSAAADY 119
+IG G +AFS A DY
Sbjct: 166 GLRAGVKAGIIGGLGF-AAFSTAIDY 190
>sp|P59670|TIM17_NEUCR Mitochondrial import inner membrane translocase subunit tim-17
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-17 PE=2 SV=1
Length = 155
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 48 RASFVAKSIGLVAGVFSSTRCGIQ--RYRKQNDWVNALIAGAVTGAAIA 94
RA + + G+ G+FS+ C I+ R K++ W N+++AG TG A+A
Sbjct: 55 RAPALGGNFGVWGGLFSTFDCAIKGLRNHKEDPW-NSILAGFFTGGALA 102
>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1
PE=2 SV=1
Length = 996
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 23 GTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGLVAGV 62
G G I GLC A+KRG + R+ FV ++ L+AGV
Sbjct: 597 GLCGDIKGLCGSENEAKKRGYVWLLRSIFVLAAMVLLAGV 636
>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
Length = 159
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 25 AGAIWGLCAG-----PQLARKRGLSGITRASFVAKSIGL----VAGVFSSTRCGIQRYRK 75
AG I+G P++ R L G+ R + + GL + GV+ +Q +R
Sbjct: 29 AGTIYGTILATWKDVPRVERNVALPGLIRTLKMMGTHGLTFAAIGGVYIGVEQLVQNFRS 88
Query: 76 QNDWVNALIAGAVTGAAI 93
+ D+ N I G V GA++
Sbjct: 89 KRDFYNGAIGGFVAGASV 106
>sp|Q54K35|TIM17_DICDI Mitochondrial import inner membrane translocase subunit tim17
OS=Dictyostelium discoideum GN=timm17 PE=3 SV=1
Length = 183
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 62 VFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVA-------GIVSAFS 114
+FS C + RK D VN + AGA+TG +AA + W + A GI+ AF
Sbjct: 66 LFSGFDCTLSYIRKTEDTVNPIAAGALTGGILAARS-GWKHSVQAAAFGGIFIGIIEAFQ 124
>sp|P14553|POLG_HAVS2 Genome polyprotein OS=Simian hepatitis A virus genotype V (isolate
AGM-27) PE=3 SV=2
Length = 2230
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 57 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIG--VAGIVSAFS 114
GL A + R G ++ W + AG +TG I +WT++ + +V F+
Sbjct: 860 GLTADTRALRRYGFSLAAGRSVWTLEMEAGVLTGRMIRLNDEKWTEIKDDKIVALVEKFT 919
Query: 115 AAADYSRTN 123
+ ++S+ N
Sbjct: 920 SNKNWSKVN 928
>sp|Q0P3M4|RPOC2_OSTTA DNA-directed RNA polymerase subunit beta'' OS=Ostreococcus tauri
GN=rpoC2 PE=3 SV=1
Length = 1011
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 43 LSGITRASFVAKSIGLVAGVFSSTRCGIQR--YRKQNDWVNALIAGAVTGAAIAAGT 97
L GITRA+ +A+S + A F T+ + + Q DW+ L + G I AGT
Sbjct: 953 LLGITRAALMAESF-ISAASFQETKRVLSKAALEGQIDWLTGLKENVILGRLIPAGT 1008
>sp|Q0AKX7|RL21_MARMM 50S ribosomal protein L21 OS=Maricaulis maris (strain MCS10)
GN=rplU PE=3 SV=1
Length = 223
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 34 GPQLARKRGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNA 82
GP LA K +GIT + VA S T G++ ++NDW+NA
Sbjct: 169 GPALATKLNEAGITTFAQVAAWTEADLDALSETITGLKAKAEKNDWINA 217
>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2
OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
Length = 243
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 61 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 94
G+FS+ C + R++ D N++IAGA TG ++
Sbjct: 71 GLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLS 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,221,187
Number of Sequences: 539616
Number of extensions: 1256530
Number of successful extensions: 3996
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3944
Number of HSP's gapped (non-prelim): 63
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)