Query 033278
Match_columns 123
No_of_seqs 119 out of 590
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:58:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 1E-31 2.2E-36 193.4 4.0 118 4-122 35-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 100.0 3.6E-29 7.7E-34 183.7 11.1 114 6-120 4-127 (170)
3 PTZ00236 mitochondrial import 100.0 6E-28 1.3E-32 176.2 13.1 113 6-120 6-129 (164)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 9.5E-25 2.1E-29 152.5 12.9 112 10-122 1-126 (128)
5 KOG1652 Mitochondrial import i 99.9 8.7E-27 1.9E-31 170.8 -0.4 115 5-120 3-127 (183)
6 TIGR00983 3a0801s02tim23 mitoc 99.9 3.4E-23 7.4E-28 149.5 11.5 105 8-114 31-146 (149)
7 KOG3324 Mitochondrial import i 99.6 4E-16 8.7E-21 116.1 6.2 106 9-115 75-191 (206)
8 COG5596 TIM22 Mitochondrial im 99.6 1.6E-17 3.5E-22 122.6 -1.2 117 6-123 41-189 (191)
9 COG5596 TIM22 Mitochondrial im 97.9 2.1E-06 4.6E-11 63.9 -0.4 114 6-119 25-161 (191)
10 PF10247 Romo1: Reactive mitoc 96.3 0.012 2.7E-07 37.2 4.8 57 9-65 1-57 (67)
11 KOG4096 Uncharacterized conser 95.8 0.019 4.2E-07 36.7 4.2 60 7-66 3-62 (75)
12 KOG4608 Uncharacterized conser 95.6 0.0099 2.1E-07 46.2 2.7 47 57-103 139-185 (270)
13 KOG1398 Uncharacterized conser 93.5 0.089 1.9E-06 43.7 3.6 44 52-95 302-345 (460)
14 PTZ00236 mitochondrial import 79.7 22 0.00047 26.2 9.0 112 10-121 18-137 (164)
15 PF05818 TraT: Enterobacterial 76.2 4.5 9.8E-05 31.1 4.0 40 82-121 89-129 (215)
16 COG5336 Uncharacterized protei 61.9 49 0.0011 23.0 6.2 28 11-38 44-71 (116)
17 PF13436 Gly-zipper_OmpA: Glyc 61.5 25 0.00053 24.2 4.9 40 77-117 50-91 (118)
18 PF10439 Bacteriocin_IIc: Bact 56.4 44 0.00096 20.4 5.7 31 77-107 23-53 (65)
19 PF07080 DUF1348: Protein of u 53.9 8 0.00017 27.8 1.4 17 66-82 9-25 (143)
20 PRK13731 conjugal transfer sur 51.6 28 0.00061 27.3 4.1 48 73-120 106-158 (243)
21 PF12732 YtxH: YtxH-like prote 50.9 20 0.00044 22.3 2.8 20 17-36 3-22 (74)
22 PF13488 Gly-zipper_Omp: Glyci 50.5 48 0.001 19.1 4.6 37 84-121 4-42 (46)
23 COG3558 Uncharacterized protei 48.1 11 0.00023 26.8 1.3 17 66-82 11-27 (154)
24 PF13940 Ldr_toxin: Toxin Ldr, 47.9 15 0.00032 20.1 1.5 21 77-97 12-32 (35)
25 PF14689 SPOB_a: Sensor_kinase 42.1 33 0.00072 20.7 2.7 20 64-83 7-27 (62)
26 COG2979 Uncharacterized protei 41.8 36 0.00077 26.3 3.3 39 76-114 31-73 (225)
27 COG4980 GvpP Gas vesicle prote 39.1 43 0.00092 23.3 3.1 19 18-36 10-28 (115)
28 PRK10510 putative outer membra 37.7 46 0.001 25.2 3.4 38 83-121 39-81 (219)
29 PF01024 Colicin: Colicin pore 36.5 1.6E+02 0.0035 22.1 6.1 26 93-118 151-176 (187)
30 KOG1398 Uncharacterized conser 31.7 72 0.0016 27.0 3.8 35 57-91 86-120 (460)
31 PRK11280 hypothetical protein; 31.5 1.3E+02 0.0028 22.3 4.9 41 79-120 65-109 (170)
32 PF11947 DUF3464: Protein of u 29.9 62 0.0013 23.5 2.9 32 13-44 100-131 (153)
33 PF03116 NQR2_RnfD_RnfE: NQR2, 29.0 1.2E+02 0.0026 24.4 4.7 43 64-106 53-99 (313)
34 PF12989 DUF3873: Domain of un 25.9 37 0.00081 21.5 1.0 21 60-80 44-64 (69)
35 PF13441 Gly-zipper_YMGG: YMGG 25.6 71 0.0015 18.5 2.1 33 83-116 7-41 (45)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-31 Score=193.41 Aligned_cols=118 Identities=29% Similarity=0.385 Sum_probs=106.3
Q ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHhhhchhhhhhc-----CCcchh--------hHHHHHHHHHHHHHHhHhHHHHH
Q 033278 4 ELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKR-----GLSGIT--------RASFVAKSIGLVAGVFSSTRCGI 70 (123)
Q Consensus 4 ~~~~~~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~-----g~~~~~--------~~~~~~~~fa~~g~~ys~~ec~~ 70 (123)
.++.+++|+.|++.+.+.|.++|+++|+|.++++.++. ..+.++ +..+++|+|+++|++|+++||.+
T Consensus 35 ~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~i 114 (168)
T KOG3225|consen 35 YLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLI 114 (168)
T ss_pred HHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHH
Confidence 57888999999999999999999999999999985432 123332 23458999999999999999999
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHHhc
Q 033278 71 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT 122 (123)
Q Consensus 71 e~~R~k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~~~ 122 (123)
|++|.|+||+|.+++||+||+.++.|+||++.++||+ +|++||++||+|++
T Consensus 115 E~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~a-gfa~fS~~id~y~~ 165 (168)
T KOG3225|consen 115 ESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCA-GFAAFSAAIDKYMR 165 (168)
T ss_pred HHHHhhhchhcceeeeeeeccchhhcccchhhhhchh-HHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998 99999999999986
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.96 E-value=3.6e-29 Score=183.72 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=91.0
Q ss_pred hccCCchHHHHHHHHHHHH----HHHHHHhhhchhhh----hhcCCcc--hhhHHHHHHHHHHHHHHhHhHHHHHHHHHh
Q 033278 6 IDAVPCSSLAVDAILRIGT----AGAIWGLCAGPQLA----RKRGLSG--ITRASFVAKSIGLVAGVFSSTRCGIQRYRK 75 (123)
Q Consensus 6 ~~~~~C~~r~v~~~~~gg~----~G~~~G~~~~~~~~----~~~g~~~--~~~~~~~~~~fa~~g~~ys~~ec~~e~~R~ 75 (123)
..+||||+|.++++..+.. .|++|+++.+.... +..+... +++...++++|++||++|+++||+++++|+
T Consensus 4 ~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~ 83 (170)
T TIGR00980 4 YTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRK 83 (170)
T ss_pred cccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999954433 44455555443322 1112222 345567999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHH
Q 033278 76 QNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS 120 (123)
Q Consensus 76 k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~ 120 (123)
|||+||+++||++||++|++++|+++++.+|+ .+++++++||+.
T Consensus 84 KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa-~gg~~la~ie~~ 127 (170)
T TIGR00980 84 KEDPWNSIISGFLTGAALAVRGGPRAMRGSAI-LGACILAVIEGV 127 (170)
T ss_pred ccchHHHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999988888775 999999999975
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.96 E-value=6e-28 Score=176.22 Aligned_cols=113 Identities=21% Similarity=0.380 Sum_probs=85.4
Q ss_pred hccCCchHHHHHHH---HHHHH-HHHHHHhhhchhhhhhcCC-----cc--hhhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 033278 6 IDAVPCSSLAVDAI---LRIGT-AGAIWGLCAGPQLARKRGL-----SG--ITRASFVAKSIGLVAGVFSSTRCGIQRYR 74 (123)
Q Consensus 6 ~~~~~C~~r~v~~~---~~gg~-~G~~~G~~~~~~~~~~~g~-----~~--~~~~~~~~~~fa~~g~~ys~~ec~~e~~R 74 (123)
-.+||||+|.++++ +.++. .|++++++.+.. +.+.+. .. +.+.+.++++|++||++|+++||+++++|
T Consensus 6 ~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~r-nsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R 84 (164)
T PTZ00236 6 LSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMR-NSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR 84 (164)
T ss_pred hCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHH-hCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998 33333 333444444443 323221 11 34566799999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHH
Q 033278 75 KQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS 120 (123)
Q Consensus 75 ~k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~ 120 (123)
+|||+||+++||++||++|++++||++++.+. +.++++.++||.+
T Consensus 85 ~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a-~~Gg~~~~~ie~~ 129 (164)
T PTZ00236 85 GKEDHWNAIASGFFTGGVLAIRGGWRSAVRNA-IFGGILLGIIELV 129 (164)
T ss_pred ccCchHHHHHHHHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999876654 3666666666643
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.93 E-value=9.5e-25 Score=152.46 Aligned_cols=112 Identities=29% Similarity=0.419 Sum_probs=97.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhchhhh--hh-cCCcchhh-------HHH----HHHHHHHHHHHhHhHHHHHHHHHh
Q 033278 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLA--RK-RGLSGITR-------ASF----VAKSIGLVAGVFSSTRCGIQRYRK 75 (123)
Q Consensus 10 ~C~~r~v~~~~~gg~~G~~~G~~~~~~~~--~~-~g~~~~~~-------~~~----~~~~fa~~g~~ys~~ec~~e~~R~ 75 (123)
||++|++++++.+..+|.++|.+.+.++. .. ++.+.+++ ... .++.||.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999998843 11 22222222 222 788899999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHHhc
Q 033278 76 QNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT 122 (123)
Q Consensus 76 k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~~~ 122 (123)
|||+||+++||++||++++.+.+++.++.+++ .+++++.++|++++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~-~~a~~~~~~~~~~~ 126 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAA-LGAAFAAAVEYYGR 126 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999975 99999999999875
No 5
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=8.7e-27 Score=170.81 Aligned_cols=115 Identities=27% Similarity=0.322 Sum_probs=99.1
Q ss_pred hhccCCchHHHHHHH---HHHHHHHH-----HHHhhhchhhhhhcCCcc--hhhHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 033278 5 LIDAVPCSSLAVDAI---LRIGTAGA-----IWGLCAGPQLARKRGLSG--ITRASFVAKSIGLVAGVFSSTRCGIQRYR 74 (123)
Q Consensus 5 ~~~~~~C~~r~v~~~---~~gg~~G~-----~~G~~~~~~~~~~~g~~~--~~~~~~~~~~fa~~g~~ys~~ec~~e~~R 74 (123)
.+.+||||+|.++|. +.++++|+ +.|+++++...+..+... +.+...++++|++||++||.+||++..+|
T Consensus 3 e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R 82 (183)
T KOG1652|consen 3 EYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIR 82 (183)
T ss_pred cccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccccchhhhhccCcccccceeeeechhhHHHHHHHHHh
Confidence 467899999999998 44555554 777788887776666655 45566799999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHH
Q 033278 75 KQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS 120 (123)
Q Consensus 75 ~k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~ 120 (123)
+|||.||++++|++||++|+.|+|+++++-++ +.++++.+++|-+
T Consensus 83 ~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa-~~~g~~lamieg~ 127 (183)
T KOG1652|consen 83 KKEDPWNSIVSGAATGGLLAARGGPKAMLTSA-ITGGLLLAMIEGL 127 (183)
T ss_pred cccchHHHHHHHhhccceeeccccHHHHHHHH-HHHHHHHHHHHhH
Confidence 99999999999999999999999999998887 5999999999855
No 6
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.90 E-value=3.4e-23 Score=149.53 Aligned_cols=105 Identities=21% Similarity=0.138 Sum_probs=88.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhhhchhhhhhcCCcchhh-----------HHHHHHHHHHHHHHhHhHHHHHHHHHhh
Q 033278 8 AVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITR-----------ASFVAKSIGLVAGVFSSTRCGIQRYRKQ 76 (123)
Q Consensus 8 ~~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~~~~~-----------~~~~~~~fa~~g~~ys~~ec~~e~~R~k 76 (123)
.|+-.+.+..+++.|.++|+++|++++..+.+. +.+.+.| ...++++||+++.+|+++||.++++|+|
T Consensus 31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~-~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k 109 (149)
T TIGR00983 31 FEDLCFGTGTCYLTGLAIGALNGLRLGLKETQS-MPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGK 109 (149)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355567888999999999999999999986422 2233333 2347999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHH
Q 033278 77 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFS 114 (123)
Q Consensus 77 ~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s 114 (123)
||+||+++||++||+++++++||++++.+++ .+++++
T Consensus 110 ~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~-~G~~l~ 146 (149)
T TIGR00983 110 HDDFNSVAAGALTGALYKSTRGLRGMARSGA-LGATAA 146 (149)
T ss_pred chhhHhHHHHHHHHHHHHhccChHHHHHHhH-HHHHHh
Confidence 9999999999999999999999999999997 444443
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4e-16 Score=116.14 Aligned_cols=106 Identities=26% Similarity=0.224 Sum_probs=86.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhchhhhhhcCCcchhhHHH-----------HHHHHHHHHHHhHhHHHHHHHHHhhh
Q 033278 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASF-----------VAKSIGLVAGVFSSTRCGIQRYRKQN 77 (123)
Q Consensus 9 ~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~~~~~~~~-----------~~~~fa~~g~~ys~~ec~~e~~R~k~ 77 (123)
|+-.+.+.-.++.|.++|+.+|+..+...... +.++|.+... .+++.++++.+|+.+|..++..|+||
T Consensus 75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~-~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~d 153 (206)
T KOG3324|consen 75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNTEN-GASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKD 153 (206)
T ss_pred hhhheeccchhccchhhhhHHHHHHhhhcCCC-CCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccc
Confidence 44556666777889999999999988876544 4555544433 57778999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHH
Q 033278 78 DWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSA 115 (123)
Q Consensus 78 D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~ 115 (123)
|++|++.||++||+++.++.|++++.++.+++..+.++
T Consensus 154 d~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~a 191 (206)
T KOG3324|consen 154 DDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAA 191 (206)
T ss_pred cchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998755444433
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.6e-17 Score=122.62 Aligned_cols=117 Identities=22% Similarity=0.194 Sum_probs=99.1
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhhhchhhhhh-----cC----------------CcchhhHHH-----------HH
Q 033278 6 IDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARK-----RG----------------LSGITRASF-----------VA 53 (123)
Q Consensus 6 ~~~~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~-----~g----------------~~~~~~~~~-----------~~ 53 (123)
.+...|+.+++.+.+.|..+|...|.|.++..... .+ .+.+.|.+. ++
T Consensus 41 ~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG 120 (191)
T COG5596 41 AFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTG 120 (191)
T ss_pred chhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccccc
Confidence 34447999999999999999999999998875322 01 112333332 69
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhchHHHHHHHHHHHHHHhcCcchHHHHHHhHHHHHHHHHHHHHHhcC
Q 033278 54 KSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRTN 123 (123)
Q Consensus 54 ~~fa~~g~~ys~~ec~~e~~R~k~D~~N~~~aG~~tGail~~~~g~~~~~~g~ai~~aa~s~a~d~~~~~ 123 (123)
+++++.|..|.+.+|.++.+|+|||+.|++.+|..||+.++.+.+++++.++.+ +++++|+.++.++|.
T Consensus 121 ~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a-~~aa~s~~~~~~~~~ 189 (191)
T COG5596 121 KNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGA-GFAAFSAGITLAMKS 189 (191)
T ss_pred cccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCcc-chhhhhhhHHhhhhc
Confidence 999999999999999999999999999999999999999999999999999997 999999999998863
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.1e-06 Score=63.87 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=79.4
Q ss_pred hccCCchHHHHHHHHHHHHHHHHHHhhhchhhhhhcCCc---c-------hhhHHHHHHHHH-HHHHHhHhHHHHHHHHH
Q 033278 6 IDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLS---G-------ITRASFVAKSIG-LVAGVFSSTRCGIQRYR 74 (123)
Q Consensus 6 ~~~~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~---~-------~~~~~~~~~~fa-~~g~~ys~~ec~~e~~R 74 (123)
|.++||+..-+.++-...-.+.+.+...+..+--.-+.+ + ..+.-.++++|+ +||++++.++|..+++|
T Consensus 25 ~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q 104 (191)
T COG5596 25 EERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQ 104 (191)
T ss_pred hhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHH
Confidence 467899999999986644444444444333321111111 1 112223688887 89999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHHhcCcc---hHHHHHH---------hHHHHHHHHHHHHH
Q 033278 75 KQNDWVNALIAGAVTGAAIAAGTR---RWTQVIG---------VAGIVSAFSAAADY 119 (123)
Q Consensus 75 ~k~D~~N~~~aG~~tGail~~~~g---~~~~~~g---------~ai~~aa~s~a~d~ 119 (123)
.|+|.||....|.+||..++.... .+-.++. |+++.+++..+.-.
T Consensus 105 ~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~ 161 (191)
T COG5596 105 LKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALA 161 (191)
T ss_pred HhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHH
Confidence 999999999999999988887765 3344555 77778887776543
No 10
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=96.26 E-value=0.012 Score=37.19 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhhchhhhhhcCCcchhhHHHHHHHHHHHHHHhHh
Q 033278 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGLVAGVFSS 65 (123)
Q Consensus 9 ~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~~~~~~~~~~~~fa~~g~~ys~ 65 (123)
++|..|.-..++.|+.+|...|+..+.++....+...+...+++++.+.--++.|.+
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~ 57 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGF 57 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHH
Confidence 589999999999999999999999999987666666666666666655444444443
No 11
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.019 Score=36.71 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=46.9
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhchhhhhhcCCcchhhHHHHHHHHHHHHHHhHhH
Q 033278 7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGLVAGVFSST 66 (123)
Q Consensus 7 ~~~~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~~~~~~~~~~~~fa~~g~~ys~~ 66 (123)
..++|..|.-..++.|+++|...|+..+.+.....+...+...+.++|.+.-=++.|..+
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~F 62 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLF 62 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhh
Confidence 578999999999999999999999999988876677777777777766664444444443
No 12
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0099 Score=46.24 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=41.6
Q ss_pred HHHHHHhHhHHHHHHHHHhhhchHHHHHHHHHHHHHHhcCcchHHHH
Q 033278 57 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQV 103 (123)
Q Consensus 57 a~~g~~ys~~ec~~e~~R~k~D~~N~~~aG~~tGail~~~~g~~~~~ 103 (123)
|.+.+.|-++...+..+|+|+|.||=+++|.+||+++...=|++-.+
T Consensus 139 alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~a 185 (270)
T KOG4608|consen 139 ALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLA 185 (270)
T ss_pred eeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHh
Confidence 77888899999999999999999999999999999998887755443
No 13
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.089 Score=43.71 Aligned_cols=44 Identities=18% Similarity=0.425 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhhhchHHHHHHHHHHHHHHhc
Q 033278 52 VAKSIGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 95 (123)
Q Consensus 52 ~~~~fa~~g~~ys~~ec~~e~~R~k~D~~N~~~aG~~tGail~~ 95 (123)
++--++.+-++|..+.|.+.+++-+||..|+++||.+++.-+..
T Consensus 302 lg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 302 LGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred hhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 44455889999999999999999999999999999998865443
No 14
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=79.70 E-value=22 Score=26.18 Aligned_cols=112 Identities=11% Similarity=-0.054 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhhchhhhhh------cCCcchhhHHHHHHHHHHHHHHhHhHHHHHHHHHhhhchHHHH
Q 033278 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARK------RGLSGITRASFVAKSIGLVAGVFSSTRCGIQRYRKQNDWVNAL 83 (123)
Q Consensus 10 ~C~~r~v~~~~~gg~~G~~~G~~~~~~~~~~------~g~~~~~~~~~~~~~fa~~g~~ys~~ec~~e~~R~k~D~~N~~ 83 (123)
.|-.--....+.|++.+.+.|+.+++...+. .......-.+..+.--++..++.+.++..=++-=-.+-.+-..
T Consensus 18 d~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~ 97 (164)
T PTZ00236 18 DMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGF 97 (164)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444455667788888889999988765432 1111111112222222333333333333333332233334444
Q ss_pred HHHHHHHHHHhcCcchHHHHHHhHH--HHHHHHHHHHHHh
Q 033278 84 IAGAVTGAAIAAGTRRWTQVIGVAG--IVSAFSAAADYSR 121 (123)
Q Consensus 84 ~aG~~tGail~~~~g~~~~~~g~ai--~~aa~s~a~d~~~ 121 (123)
+.|.+-+.--+.++-.+++++|+.+ .+..++.++++++
T Consensus 98 ~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~ 137 (164)
T PTZ00236 98 FTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQ 137 (164)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433333333333344444321 2566777777665
No 15
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=76.24 E-value=4.5 Score=31.05 Aligned_cols=40 Identities=33% Similarity=0.243 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCc-chHHHHHHhHHHHHHHHHHHHHHh
Q 033278 82 ALIAGAVTGAAIAAGT-RRWTQVIGVAGIVSAFSAAADYSR 121 (123)
Q Consensus 82 ~~~aG~~tGail~~~~-g~~~~~~g~ai~~aa~s~a~d~~~ 121 (123)
.+++|+++|+.++... +....++|.++.+|+...+.|.+.
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~v 129 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAMV 129 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhhc
Confidence 4556666666665443 355567776667788888877654
No 16
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.91 E-value=49 Score=22.97 Aligned_cols=28 Identities=11% Similarity=-0.144 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhchhhh
Q 033278 11 CSSLAVDAILRIGTAGAIWGLCAGPQLA 38 (123)
Q Consensus 11 C~~r~v~~~~~gg~~G~~~G~~~~~~~~ 38 (123)
-+++...++++|-++|..+|.+..-+-.
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678889999999999999999888753
No 17
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=61.52 E-value=25 Score=24.22 Aligned_cols=40 Identities=35% Similarity=0.303 Sum_probs=22.9
Q ss_pred hchHHHHHHHHHHHHHHhcCcch--HHHHHHhHHHHHHHHHHH
Q 033278 77 NDWVNALIAGAVTGAAIAAGTRR--WTQVIGVAGIVSAFSAAA 117 (123)
Q Consensus 77 ~D~~N~~~aG~~tGail~~~~g~--~~~~~g~ai~~aa~s~a~ 117 (123)
++.....+.|++.|++++.-.|. ...++|.+ .+++..++.
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa-~Ga~~G~~~ 91 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAA-AGAAVGAAA 91 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHH-HHHHHHHHh
Confidence 44555566677777777776553 45555554 444444333
No 18
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=56.39 E-value=44 Score=20.42 Aligned_cols=31 Identities=26% Similarity=0.212 Sum_probs=22.2
Q ss_pred hchHHHHHHHHHHHHHHhcCcchHHHHHHhH
Q 033278 77 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVA 107 (123)
Q Consensus 77 ~D~~N~~~aG~~tGail~~~~g~~~~~~g~a 107 (123)
.+.+..+.+++++|++.+...++....+..+
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga 53 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGPPVGAVAGA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 4566778889999999999988753333333
No 19
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=53.89 E-value=8 Score=27.80 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhchHHH
Q 033278 66 TRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N~ 82 (123)
.|.+++++|-.+|.||+
T Consensus 9 ~etA~~KVr~AEdaWNs 25 (143)
T PF07080_consen 9 RETAIQKVRAAEDAWNS 25 (143)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 48899999999999996
No 20
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=51.58 E-value=28 Score=27.26 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=27.6
Q ss_pred HHhhhchHHHHHHHHHHHHHHhc-----CcchHHHHHHhHHHHHHHHHHHHHH
Q 033278 73 YRKQNDWVNALIAGAVTGAAIAA-----GTRRWTQVIGVAGIVSAFSAAADYS 120 (123)
Q Consensus 73 ~R~k~D~~N~~~aG~~tGail~~-----~~g~~~~~~g~ai~~aa~s~a~d~~ 120 (123)
.|..+-+.+..+.|+++|+.++. .++.-..++|.++..+++.++.|.+
T Consensus 106 ~~~a~~~L~~Gy~ga~~Gaa~G~~~~~y~~~~ag~~~G~Glagglig~~ada~ 158 (243)
T PRK13731 106 LRESQGWLNRGYEGAAVGAALGAGITGYNSNSAGATLGVGLAAGLVGMAADAM 158 (243)
T ss_pred HHHHHHHHhhchhhHHHHHHhhhhhhcccCCcchhhHHHHHHHHHHHHHhhhh
Confidence 44445555555556666654443 3344555666556677777777754
No 21
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=50.86 E-value=20 Score=22.28 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhchh
Q 033278 17 DAILRIGTAGAIWGLCAGPQ 36 (123)
Q Consensus 17 ~~~~~gg~~G~~~G~~~~~~ 36 (123)
.+++.|+++|++.|++.+|.
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~ 22 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK 22 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 45678888888889888885
No 22
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=50.51 E-value=48 Score=19.10 Aligned_cols=37 Identities=38% Similarity=0.350 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCcc--hHHHHHHhHHHHHHHHHHHHHHh
Q 033278 84 IAGAVTGAAIAAGTR--RWTQVIGVAGIVSAFSAAADYSR 121 (123)
Q Consensus 84 ~aG~~tGail~~~~g--~~~~~~g~ai~~aa~s~a~d~~~ 121 (123)
.-|++.|++++...+ .+..+++.+ ..++....+.+.+
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~-vGa~~G~~ig~~~ 42 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAA-VGAAVGAAIGNYM 42 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHH-HHHHHHHHHHHHH
Confidence 346666766666555 355566654 6666666666655
No 23
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.08 E-value=11 Score=26.83 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhchHHH
Q 033278 66 TRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N~ 82 (123)
.|.+++++|-.+|.||+
T Consensus 11 ~eta~~kvr~aed~wns 27 (154)
T COG3558 11 AETAIQKVRMAEDAWNS 27 (154)
T ss_pred HHHHHHHHHHhHhcccc
Confidence 47899999999999997
No 24
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=47.92 E-value=15 Score=20.13 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.1
Q ss_pred hchHHHHHHHHHHHHHHhcCc
Q 033278 77 NDWVNALIAGAVTGAAIAAGT 97 (123)
Q Consensus 77 ~D~~N~~~aG~~tGail~~~~ 97 (123)
||.--++++|.+++.++++-.
T Consensus 12 hDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 12 HDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred HHhHhHHHHHHHHHHHHHHHH
Confidence 789999999999999987643
No 25
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.11 E-value=33 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHh-hhchHHHH
Q 033278 64 SSTRCGIQRYRK-QNDWVNAL 83 (123)
Q Consensus 64 s~~ec~~e~~R~-k~D~~N~~ 83 (123)
.-++-.++.+|. +||+.|.+
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhL 27 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHL 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 345667788885 89999975
No 26
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.85 E-value=36 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=27.2
Q ss_pred hhchHHHHHHHHHHHHHHhcCcchH----HHHHHhHHHHHHHH
Q 033278 76 QNDWVNALIAGAVTGAAIAAGTRRW----TQVIGVAGIVSAFS 114 (123)
Q Consensus 76 k~D~~N~~~aG~~tGail~~~~g~~----~~~~g~ai~~aa~s 114 (123)
..+..|+.-+|++++.+|+-+++++ ..-+|..++.+++.
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~~~k~~k~GglAAlG~la 73 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKLGGKATKLGGLAALGALA 73 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHHHhhHhhhhhHHHHHHHH
Confidence 4578899999999999999999633 33344433444443
No 27
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=39.05 E-value=43 Score=23.29 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhhchh
Q 033278 18 AILRIGTAGAIWGLCAGPQ 36 (123)
Q Consensus 18 ~~~~gg~~G~~~G~~~~~~ 36 (123)
+.+.|+.+|++.+++.+|.
T Consensus 10 G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 10 GILIGGIIGAAAALLFAPK 28 (115)
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 3455555555666666554
No 28
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=37.71 E-value=46 Score=25.24 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCcc-----hHHHHHHhHHHHHHHHHHHHHHh
Q 033278 83 LIAGAVTGAAIAAGTR-----RWTQVIGVAGIVSAFSAAADYSR 121 (123)
Q Consensus 83 ~~aG~~tGail~~~~g-----~~~~~~g~ai~~aa~s~a~d~~~ 121 (123)
...|+++|++++.-.+ .+.+++|.+ .++++.+.+-+++
T Consensus 39 a~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~-~G~~~G~~~g~~~ 81 (219)
T PRK10510 39 AGIGSLVGAGIGALSSSKKDRGKGALIGAA-AGAALGGGVGYYM 81 (219)
T ss_pred hHHHHHHHHHHHhhhcCCCcccchhhhHhH-HHhhhhhhhhhhh
Confidence 4455566666665433 234555655 4455555555544
No 29
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=36.49 E-value=1.6e+02 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=13.7
Q ss_pred HhcCcchHHHHHHhHHHHHHHHHHHH
Q 033278 93 IAAGTRRWTQVIGVAGIVSAFSAAAD 118 (123)
Q Consensus 93 l~~~~g~~~~~~g~ai~~aa~s~a~d 118 (123)
++...+....++|.++..+..+..||
T Consensus 151 fs~~~~t~igi~g~ail~a~v~s~Id 176 (187)
T PF01024_consen 151 FSFILGTPIGILGIAILMAVVGSLID 176 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 33333444445566556666666554
No 30
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.66 E-value=72 Score=26.97 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=29.9
Q ss_pred HHHHHHhHhHHHHHHHHHhhhchHHHHHHHHHHHH
Q 033278 57 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGA 91 (123)
Q Consensus 57 a~~g~~ys~~ec~~e~~R~k~D~~N~~~aG~~tGa 91 (123)
.--.+.|-...|.+.++++|...||+.+++++.+.
T Consensus 86 vtn~~~f~al~C~lRkwlgkftp~t~glv~s~las 120 (460)
T KOG1398|consen 86 VTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLAS 120 (460)
T ss_pred eechHHHHHHHHHHHHHhcccCcccHHHHHHHHhh
Confidence 33455677889999999999999999999999874
No 31
>PRK11280 hypothetical protein; Provisional
Probab=31.54 E-value=1.3e+02 Score=22.27 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHhcCc----chHHHHHHhHHHHHHHHHHHHHH
Q 033278 79 WVNALIAGAVTGAAIAAGT----RRWTQVIGVAGIVSAFSAAADYS 120 (123)
Q Consensus 79 ~~N~~~aG~~tGail~~~~----g~~~~~~g~ai~~aa~s~a~d~~ 120 (123)
..++ +.|++.|++++..- |...+.+..++.++.+.-.++.-
T Consensus 65 ~~Gt-v~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i~~~ 109 (170)
T PRK11280 65 IAGS-VLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQIQGG 109 (170)
T ss_pred chhH-HHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 34455566666543 33344444445777777666643
No 32
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=29.86 E-value=62 Score=23.54 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcCCc
Q 033278 13 SLAVDAILRIGTAGAIWGLCAGPQLARKRGLS 44 (123)
Q Consensus 13 ~r~v~~~~~gg~~G~~~G~~~~~~~~~~~g~~ 44 (123)
.-+-..++..+++|..+|++.++|+...+|..
T Consensus 100 ~~~S~~~Fg~gllGisYGilSaSWD~~r~GSl 131 (153)
T PF11947_consen 100 LLVSLVFFGLGLLGISYGILSASWDPEREGSL 131 (153)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccCCCCCCCc
Confidence 33444558899999999999999998877754
No 33
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=28.99 E-value=1.2e+02 Score=24.37 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=29.9
Q ss_pred HhHHHHHHHHHhhhc----hHHHHHHHHHHHHHHhcCcchHHHHHHh
Q 033278 64 SSTRCGIQRYRKQND----WVNALIAGAVTGAAIAAGTRRWTQVIGV 106 (123)
Q Consensus 64 s~~ec~~e~~R~k~D----~~N~~~aG~~tGail~~~~g~~~~~~g~ 106 (123)
-.+|...+++|+|+. ...+++-|.+-+..+-.....+..+++.
T Consensus 53 ~l~E~l~~~l~~~~~~~~~d~sa~vTglLlal~LP~~~P~w~v~ig~ 99 (313)
T PF03116_consen 53 VLAEALFAKLRKRPIPTLKDLSAVVTGLLLALLLPPSVPLWVVAIGS 99 (313)
T ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 357999999999885 4456666666666666666666665554
No 34
>PF12989 DUF3873: Domain of unknown function, B. Theta Gene description (DUF3873); InterPro: IPR024356 This entry represents a family of uncharacterised proteins found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=25.94 E-value=37 Score=21.49 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHhHhHHHHHHHHHhhhchH
Q 033278 60 AGVFSSTRCGIQRYRKQNDWV 80 (123)
Q Consensus 60 g~~ys~~ec~~e~~R~k~D~~ 80 (123)
|-+||.+.-.++.-|.+.|-|
T Consensus 44 GeLFscV~~tLeEcRr~rd~W 64 (69)
T PF12989_consen 44 GELFSCVAPTLEECRRLRDEW 64 (69)
T ss_pred ccchhhhhccHHHHHHHHHHH
Confidence 567888888998888765544
No 35
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=25.60 E-value=71 Score=18.50 Aligned_cols=33 Identities=33% Similarity=0.233 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCcc--hHHHHHHhHHHHHHHHHH
Q 033278 83 LIAGAVTGAAIAAGTR--RWTQVIGVAGIVSAFSAA 116 (123)
Q Consensus 83 ~~aG~~tGail~~~~g--~~~~~~g~ai~~aa~s~a 116 (123)
..-|..+|++++.-.+ .+-++++.+ ..++...+
T Consensus 7 A~iGA~~GA~iG~~~g~~~~GA~iGA~-~Ga~~G~~ 41 (45)
T PF13441_consen 7 AAIGAAAGAVIGAIIGNGGKGAAIGAA-AGALAGAA 41 (45)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhhhh-hhhhhhhh
Confidence 3445555555554444 555666655 44443333
Done!