Query 033278
Match_columns 123
No_of_seqs 119 out of 590
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imj_A Hypothetical protein DU 52.2 5.5 0.00019 28.2 1.4 17 66-82 16-32 (166)
2 2elu_A Zinc finger protein 406 34.6 14 0.00049 19.4 0.9 18 63-80 19-36 (37)
3 2jm6_A NOXA; apoptosis, BCL-2, 25.4 41 0.0014 16.5 1.6 14 66-81 6-19 (27)
4 1ixm_A SPO0B, protein (sporula 24.6 47 0.0016 23.5 2.6 25 64-88 16-43 (192)
5 1cii_A Colicin IA; bacteriocin 21.7 71 0.0024 26.6 3.3 31 88-118 561-591 (602)
6 3mqp_B Phorbol-12-myristate-13 15.2 1.1E+02 0.0037 14.7 1.8 15 66-81 5-19 (25)
7 2hjm_A Hypothetical protein PF 14.7 1.7E+02 0.0059 18.8 3.3 34 64-98 33-66 (103)
8 2lbg_A Major prion protein; co 12.2 1.7E+02 0.0057 14.4 2.9 20 16-35 4-23 (27)
9 2lck_A Mitochondrial uncouplin 9.6 5.1E+02 0.017 18.6 5.1 33 63-95 85-120 (303)
10 2o35_A Hypothetical protein DU 8.4 1.8E+02 0.006 18.9 1.8 18 65-82 18-35 (105)
No 1
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=52.17 E-value=5.5 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhchHHH
Q 033278 66 TRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N~ 82 (123)
.|.+++++|-.+|.||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 47899999999999996
No 2
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=34.64 E-value=14 Score=19.35 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.6
Q ss_pred hHhHHHHHHHHHhhhchH
Q 033278 63 FSSTRCGIQRYRKQNDWV 80 (123)
Q Consensus 63 ys~~ec~~e~~R~k~D~~ 80 (123)
||-+.-.+..+|+.+|+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 677778888999999863
No 3
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=25.40 E-value=41 Score=16.46 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhchHH
Q 033278 66 TRCGIQRYRKQNDWVN 81 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N 81 (123)
+||+ .+|.-.|..|
T Consensus 6 veca--qlr~~gdkln 19 (27)
T 2jm6_A 6 DECA--QLRRIGDKVN 19 (27)
T ss_dssp HHHH--HHHHHHHHHH
T ss_pred HHHH--HHHHHhHHHH
Confidence 5777 7887777776
No 4
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.61 E-value=47 Score=23.46 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHh-hhchHHH--HHHHHH
Q 033278 64 SSTRCGIQRYRK-QNDWVNA--LIAGAV 88 (123)
Q Consensus 64 s~~ec~~e~~R~-k~D~~N~--~~aG~~ 88 (123)
+.++-.++.+|. +|||.|- ++.|.+
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GLl 43 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGNL 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456778888994 7999995 455553
No 5
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=21.74 E-value=71 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=18.5
Q ss_pred HHHHHHhcCcchHHHHHHhHHHHHHHHHHHH
Q 033278 88 VTGAAIAAGTRRWTQVIGVAGIVSAFSAAAD 118 (123)
Q Consensus 88 ~tGail~~~~g~~~~~~g~ai~~aa~s~a~d 118 (123)
++..+++..-|..-.++|.++..+..++.||
T Consensus 561 VaAfaFS~~lGtPLGIlGiALImAvVgSlID 591 (602)
T 1cii_A 561 LVALVFSILTGSALGIIGYGLLMAVTGALID 591 (602)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3333444444543345677778888877765
No 6
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=15.15 E-value=1.1e+02 Score=14.68 Aligned_cols=15 Identities=33% Similarity=0.590 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhchHH
Q 033278 66 TRCGIQRYRKQNDWVN 81 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N 81 (123)
+||+.+ +|.-.|..|
T Consensus 5 veca~q-lrr~gdkln 19 (25)
T 3mqp_B 5 VECATQ-LRRFGDKLN 19 (26)
T ss_dssp HHHHHH-HHHHHHHHH
T ss_pred hHHHHH-HHHHhHHHH
Confidence 577765 455556655
No 7
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=14.75 E-value=1.7e+02 Score=18.81 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHhhhchHHHHHHHHHHHHHHhcCcc
Q 033278 64 SSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTR 98 (123)
Q Consensus 64 s~~ec~~e~~R~k~D~~N~~~aG~~tGail~~~~g 98 (123)
-...-.+|+.|+++ +.+..|=|++-|.+..++..
T Consensus 33 i~Ln~glEskrGe~-Fv~vsIlGFlEGiLttLK~K 66 (103)
T 2hjm_A 33 ITLTHGIEKTRGEA-FAKASIYGFLEGILTTLKMK 66 (103)
T ss_dssp HHTTSHHHHHHCHH-HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhhhHhhhchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33456788888876 88888889999988777754
No 8
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=12.19 E-value=1.7e+02 Score=14.39 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhch
Q 033278 16 VDAILRIGTAGAIWGLCAGP 35 (123)
Q Consensus 16 v~~~~~gg~~G~~~G~~~~~ 35 (123)
+.++..|.++|++-|.+.++
T Consensus 4 ~ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHH
Confidence 34556677777776666554
No 9
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=9.57 E-value=5.1e+02 Score=18.57 Aligned_cols=33 Identities=30% Similarity=0.254 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHhh---hchHHHHHHHHHHHHHHhc
Q 033278 63 FSSTRCGIQRYRKQ---NDWVNALIAGAVTGAAIAA 95 (123)
Q Consensus 63 ys~~ec~~e~~R~k---~D~~N~~~aG~~tGail~~ 95 (123)
|...|..-+.+.+. .+.+..+++|+++|++-..
T Consensus 85 f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~ 120 (303)
T 2lck_A 85 IGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVA 120 (303)
T ss_dssp TTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHH
Confidence 44444444444322 4567788899998876543
No 10
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=8.42 E-value=1.8e+02 Score=18.93 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhhhchHHH
Q 033278 65 STRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 65 ~~ec~~e~~R~k~D~~N~ 82 (123)
.+.-+++.||.+.|..|=
T Consensus 18 aFRRLv~HL~~r~DVQNI 35 (105)
T 2o35_A 18 VFRRLLEHLRERSDVQNI 35 (105)
T ss_dssp HHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHhCcchhHH
Confidence 457789999999988774
Done!