Query 033278
Match_columns 123
No_of_seqs 119 out of 590
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 19:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 48.2 3.3 0.00024 27.4 1.4 17 66-82 12-28 (155)
2 d1hvwa_ g.3.6.2 (A:) Atracotox 13.2 17 0.0012 16.3 -0.2 8 6-13 3-10 (26)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 11.0 60 0.0044 18.6 1.8 18 65-82 15-32 (79)
4 d1r6da_ c.2.1.2 (A:) dTDP-gluc 10.4 51 0.0037 22.2 1.6 19 65-83 303-321 (322)
5 d1q90r_ f.23.12.1 (R:) ISP sub 9.4 1.2E+02 0.009 14.9 2.4 20 75-94 8-27 (39)
6 d1t5ja_ a.209.1.1 (A:) Hypothe 9.0 1.3E+02 0.0094 20.0 3.3 37 64-100 239-276 (301)
7 d1y02a1 a.140.2.1 (A:71-114) R 8.7 48 0.0035 16.9 0.6 11 74-84 29-39 (44)
8 d1q59a_ f.1.4.1 (A:) Early ant 8.5 93 0.0068 20.0 2.2 16 9-24 119-134 (172)
9 d1vpua_ g.34.1.1 (A:) HIV-1 VP 6.7 1.4E+02 0.01 15.2 1.9 16 66-81 3-19 (45)
10 d1ixma_ d.123.1.1 (A:) Sporula 6.7 1.5E+02 0.011 16.9 2.6 18 67-84 7-25 (179)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=48.23 E-value=3.3 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhchHHH
Q 033278 66 TRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 66 ~ec~~e~~R~k~D~~N~ 82 (123)
.|.+++++|-.+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47889999999999997
No 2
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=13.24 E-value=17 Score=16.32 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=5.0
Q ss_pred hccCCchH
Q 033278 6 IDAVPCSS 13 (123)
Q Consensus 6 ~~~~~C~~ 13 (123)
..+.|||+
T Consensus 3 psgqpcpy 10 (26)
T d1hvwa_ 3 PSGQPCPY 10 (26)
T ss_dssp CTTSBCSS
T ss_pred CCCCcCCC
Confidence 45667775
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=10.96 E-value=60 Score=18.63 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhhhchHHH
Q 033278 65 STRCGIQRYRKQNDWVNA 82 (123)
Q Consensus 65 ~~ec~~e~~R~k~D~~N~ 82 (123)
.++-.++.+|.+.|..|=
T Consensus 15 aFrrL~~HL~~r~dVQNI 32 (79)
T d2o35a1 15 VFRRLLEHLRERSDVQNI 32 (79)
T ss_dssp HHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHhCccchhh
Confidence 457889999999988874
No 4
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}
Probab=10.45 E-value=51 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhhchHHHH
Q 033278 65 STRCGIQRYRKQNDWVNAL 83 (123)
Q Consensus 65 ~~ec~~e~~R~k~D~~N~~ 83 (123)
+++-.++.+|+.+||||++
T Consensus 303 gI~~~i~w~~~n~~~~~~~ 321 (322)
T d1r6da_ 303 GLARTVRWYRENRGWWEPL 321 (322)
T ss_dssp HHHHHHHHHHHCHHHHGGG
T ss_pred HHHHHHHHHHHhHHhHhhC
Confidence 4556778899888999874
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=9.39 E-value=1.2e+02 Score=14.89 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=14.4
Q ss_pred hhhchHHHHHHHHHHHHHHh
Q 033278 75 KQNDWVNALIAGAVTGAAIA 94 (123)
Q Consensus 75 ~k~D~~N~~~aG~~tGail~ 94 (123)
+|....|-+.-|.+++-+.+
T Consensus 8 grR~~MNLll~G~~~~~~~g 27 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLPITT 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhhhh
Confidence 35567888888888776554
No 6
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.00 E-value=1.3e+02 Score=19.99 Aligned_cols=37 Identities=16% Similarity=-0.017 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHhhhchH-HHHHHHHHHHHHHhcCcchH
Q 033278 64 SSTRCGIQRYRKQNDWV-NALIAGAVTGAAIAAGTRRW 100 (123)
Q Consensus 64 s~~ec~~e~~R~k~D~~-N~~~aG~~tGail~~~~g~~ 100 (123)
++.+.....++--.|-- |+.+.|++.|+.++..+=|.
T Consensus 239 ~f~~ai~~av~~GgDtdt~aai~Gal~GA~~G~~~IP~ 276 (301)
T d1t5ja_ 239 NFKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKNIPK 276 (301)
T ss_dssp SHHHHHHHHHTSCBSHHHHHHHHHHHHHHHHCGGGSCH
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHHHHHHhChhcCCH
Confidence 45566777777555553 78888888888888765443
No 7
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=48 Score=16.92 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=7.6
Q ss_pred HhhhchHHHHH
Q 033278 74 RKQNDWVNALI 84 (123)
Q Consensus 74 R~k~D~~N~~~ 84 (123)
|+|+|..|=++
T Consensus 29 rEKedLV~LVl 39 (44)
T d1y02a1 29 REKEELVLLVL 39 (44)
T ss_dssp CSHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 67777777554
No 8
>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus [TaxId: 10376]}
Probab=8.52 E-value=93 Score=19.95 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=13.1
Q ss_pred CCchHHHHHHHHHHHH
Q 033278 9 VPCSSLAVDAILRIGT 24 (123)
Q Consensus 9 ~~C~~r~v~~~~~gg~ 24 (123)
.|||++.|+..++|-.
T Consensus 119 ~n~pYyvVDl~vRGmL 134 (172)
T d1q59a_ 119 QSTPYYVVDLSVRGML 134 (172)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCCCeeeeehhhhhhh
Confidence 6899999998887643
No 9
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.72 E-value=1.4e+02 Score=15.15 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=10.6
Q ss_pred HHHHHHHHHhh-hchHH
Q 033278 66 TRCGIQRYRKQ-NDWVN 81 (123)
Q Consensus 66 ~ec~~e~~R~k-~D~~N 81 (123)
++..++++|.+ +|--|
T Consensus 3 IdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGN 19 (45)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccCCC
Confidence 46778888875 45444
No 10
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=6.70 E-value=1.5e+02 Score=16.91 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=11.3
Q ss_pred HHHHHHHHh-hhchHHHHH
Q 033278 67 RCGIQRYRK-QNDWVNALI 84 (123)
Q Consensus 67 ec~~e~~R~-k~D~~N~~~ 84 (123)
+-.++-++. +||+.|++-
T Consensus 7 ~e~~~~l~~~~Hdl~npL~ 25 (179)
T d1ixma_ 7 NELIHLLGHSRHDWMNKLQ 25 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhhcCHHH
Confidence 334444553 699999863
Done!