BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033281
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
 pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
          Length = 210

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 40  IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSA 99
           +IL S S  RKE+L  +   ++++ +E++EK  R   PE+ V  LA+ KA+A+       
Sbjct: 26  LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAV------- 78

Query: 100 GQLNPTTLLITADT 113
             L+P  ++I ADT
Sbjct: 79  ADLHPHAIVIGADT 92


>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
 pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
 pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
           With D-(Utp)
 pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
           With D-(Utp)
          Length = 189

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 40  IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSA 99
           +IL S S  RKE+L  +   ++++ +E++EK  R   PE+ V  LA+ KA+A+       
Sbjct: 5   LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAV------- 57

Query: 100 GQLNPTTLLITADT 113
             L+P  ++I ADT
Sbjct: 58  ADLHPHAIVIGADT 71


>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
           T.Brucei
          Length = 207

 Score = 34.3 bits (77), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)

Query: 40  IILGSSSMARKEILAEMGYE----FTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSR 95
           +I+G+SS  R  +L E   +    F ++  +IDEK+ R   P +L  ++A AK +A+   
Sbjct: 12  MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAV--- 68

Query: 96  LQSAGQLNP 104
           L+ A Q +P
Sbjct: 69  LEKARQHSP 77


>pdb|2VOZ|A Chain A, Apo Futa2 From Synechocystis Pcc6803
 pdb|2VOZ|B Chain B, Apo Futa2 From Synechocystis Pcc6803
 pdb|2VP1|A Chain A, Fe-Futa2 From Synechocystis Pcc6803
 pdb|2VP1|B Chain B, Fe-Futa2 From Synechocystis Pcc6803
          Length = 346

 Score = 28.9 bits (63), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 84  LAEAKAEAIRSRLQSAGQLNPTTLLITADTGLF 116
           L EA AE +  R+QS G  +P  +L T D G+ 
Sbjct: 59  LIEASAEELIERIQSEGANSPGDILFTVDAGML 91


>pdb|3QMW|A Chain A, Redj With Peg Molecule Bound In The Active Site
 pdb|3QMW|B Chain B, Redj With Peg Molecule Bound In The Active Site
 pdb|3QMW|C Chain C, Redj With Peg Molecule Bound In The Active Site
 pdb|3QMW|D Chain D, Redj With Peg Molecule Bound In The Active Site
          Length = 259

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 56 MGYEFTVVTAEIDEKSIR-KDKPEDLVMALAEAKAEAI 92
          +G E  VV  ++  + +R +++P D +  LAEA A+A+
Sbjct: 53 LGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADAL 90


>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
 pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
          Length = 134

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 9   FRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILAEMGYEFTV------ 62
           F   HL     + T FER        +S    +LG     +  I       F +      
Sbjct: 33  FNPLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLGQSLSFKLPVFVGD 92

Query: 63  -VTAEIDEKSIRKDKP 77
            VTAE++  ++R+DKP
Sbjct: 93  EVTAEVEVTALREDKP 108


>pdb|2PT1|A Chain A, Futa1 Synechocystis Pcc 6803
 pdb|2PT2|A Chain A, Structure Of Futa1 With Iron(Ii)
 pdb|3F11|A Chain A, Structure Of Futa1 With Iron(Iii)
          Length = 334

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 84  LAEAKAEAIRSRLQSAGQLNPTTLLITAD 112
           L E KA+ +  R++S G  +P  +L+T D
Sbjct: 49  LIEGKADELLERIKSEGANSPADVLLTVD 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.331 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,767,628
Number of Sequences: 62578
Number of extensions: 83538
Number of successful extensions: 328
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 12
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)