Query 033281
Match_columns 122
No_of_seqs 131 out of 1020
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14368 Maf-like protein; Pro 99.9 1.2E-25 2.6E-30 173.0 10.7 79 35-120 2-80 (193)
2 PRK02141 Maf-like protein; Rev 99.9 1.6E-25 3.6E-30 173.9 11.3 79 38-120 9-87 (207)
3 TIGR00172 maf MAF protein. Thi 99.9 1.7E-25 3.6E-30 170.8 10.4 76 38-120 3-78 (183)
4 COG0424 Maf Nucleotide-binding 99.9 1.8E-25 3.9E-30 172.3 10.6 77 38-120 3-79 (193)
5 PRK04056 Maf-like protein; Rev 99.9 4.3E-25 9.2E-30 168.3 10.4 76 39-120 1-76 (180)
6 PRK14367 Maf-like protein; Pro 99.9 5E-25 1.1E-29 170.5 10.9 82 39-120 3-84 (202)
7 PRK00234 Maf-like protein; Rev 99.9 4E-25 8.7E-30 169.7 10.2 75 39-120 3-77 (192)
8 PRK00078 Maf-like protein; Rev 99.9 5.7E-25 1.2E-29 168.9 10.5 78 38-120 1-79 (192)
9 PRK00148 Maf-like protein; Rev 99.9 5.5E-25 1.2E-29 169.3 10.1 76 38-120 1-76 (194)
10 PRK00032 Maf-like protein; Rev 99.9 7E-25 1.5E-29 168.3 10.5 76 39-120 3-78 (190)
11 PRK00884 Maf-like protein; Rev 99.9 6.8E-25 1.5E-29 168.9 10.1 76 38-120 2-77 (194)
12 PRK04425 Maf-like protein; Rev 99.9 8.1E-25 1.8E-29 168.7 10.4 76 38-120 5-80 (196)
13 PRK04694 Maf-like protein; Rev 99.9 1.1E-24 2.3E-29 167.2 10.6 79 39-120 1-79 (190)
14 PRK02478 Maf-like protein; Rev 99.9 1.4E-24 3E-29 167.6 10.1 76 38-120 3-84 (199)
15 PRK01839 Maf-like protein; Rev 99.9 2.4E-24 5.2E-29 167.5 11.4 88 29-120 3-96 (209)
16 PRK14366 Maf-like protein; Pro 99.9 1.8E-24 4E-29 166.7 10.6 77 37-120 4-81 (195)
17 PRK00648 Maf-like protein; Rev 99.9 2.3E-24 4.9E-29 165.4 10.9 77 38-120 3-80 (191)
18 PRK01526 Maf-like protein; Rev 99.9 2.5E-24 5.5E-29 167.0 10.8 79 36-120 6-85 (205)
19 PRK14363 Maf-like protein; Pro 99.9 2.3E-24 5E-29 167.2 10.3 76 38-120 1-76 (204)
20 PRK01441 Maf-like protein; Rev 99.9 3.2E-24 7E-29 166.4 11.1 82 38-120 5-87 (207)
21 cd00555 Maf Nucleotide binding 99.9 2.2E-24 4.7E-29 164.0 9.7 75 40-120 1-75 (180)
22 PF02545 Maf: Maf-like protein 99.9 1.5E-24 3.2E-29 166.8 8.2 77 38-120 1-79 (195)
23 PRK14362 Maf-like protein; Pro 99.9 5E-24 1.1E-28 165.6 11.0 76 38-120 12-88 (207)
24 PRK14365 Maf-like protein; Pro 99.9 4.3E-24 9.3E-29 164.7 9.8 75 39-120 3-78 (197)
25 PRK14361 Maf-like protein; Pro 99.9 5.4E-24 1.2E-28 163.1 9.3 73 40-120 1-73 (187)
26 PRK14364 Maf-like protein; Pro 99.9 1.2E-23 2.7E-28 160.3 9.3 72 42-120 1-72 (181)
27 cd00985 Maf_Ham1 Maf_Ham1. Maf 99.8 1.7E-18 3.7E-23 123.6 9.3 73 40-120 1-74 (131)
28 KOG1509 Predicted nucleic acid 99.8 3.1E-18 6.6E-23 132.6 9.2 83 36-119 8-92 (209)
29 PRK14824 putative deoxyribonuc 94.0 0.48 1E-05 36.9 8.4 67 38-119 1-73 (201)
30 PRK14823 putative deoxyribonuc 92.9 1 2.2E-05 34.6 8.6 67 38-119 1-75 (191)
31 PRK14821 putative deoxyribonuc 92.4 1.4 3.1E-05 33.6 8.7 67 38-118 1-71 (184)
32 PRK00120 dITP/XTP pyrophosphat 91.7 1.8 3.8E-05 33.5 8.5 69 38-118 1-74 (196)
33 PRK14822 nucleoside-triphospha 91.2 1 2.3E-05 34.9 6.9 72 38-119 2-77 (200)
34 TIGR00042 non-canonical purine 90.7 2.3 5E-05 32.5 8.3 67 39-118 1-71 (184)
35 cd00515 HAM1 NTPase/HAM1. Thi 90.1 2.1 4.5E-05 32.5 7.6 65 40-119 1-71 (183)
36 PF01725 Ham1p_like: Ham1 fami 90.0 0.56 1.2E-05 35.8 4.4 65 40-119 1-75 (189)
37 PRK14826 putative deoxyribonuc 88.1 5.8 0.00013 31.3 9.0 73 36-118 7-90 (222)
38 PRK02491 putative deoxyribonuc 87.6 2.4 5.1E-05 35.6 6.8 72 38-119 128-203 (328)
39 COG0127 Xanthosine triphosphat 80.5 17 0.00037 28.3 8.4 71 38-118 2-76 (194)
40 PRK14825 putative deoxyribonuc 79.5 17 0.00038 28.0 8.2 67 39-118 3-74 (199)
41 COG0181 HemC Porphobilinogen d 73.6 2.7 5.9E-05 35.0 2.3 50 39-88 120-173 (307)
42 PF01379 Porphobil_deam: Porph 70.8 3.8 8.3E-05 32.4 2.5 26 39-64 120-145 (215)
43 cd00494 HMBS Hydroxymethylbila 70.3 4.7 0.0001 33.2 3.1 31 40-70 118-150 (292)
44 COG0041 PurE Phosphoribosylcar 69.5 6.8 0.00015 29.9 3.5 29 38-66 5-38 (162)
45 PRK00072 hemC porphobilinogen 67.6 5.8 0.00013 32.8 3.1 31 40-70 122-154 (295)
46 TIGR00212 hemC porphobilinogen 64.3 7.4 0.00016 32.1 3.1 32 39-70 117-150 (292)
47 PRK01066 porphobilinogen deami 62.5 7.9 0.00017 31.0 2.8 33 39-71 132-166 (231)
48 TIGR00083 ribF riboflavin kina 61.1 9.7 0.00021 31.1 3.2 39 45-85 55-93 (288)
49 PLN02691 porphobilinogen deami 60.1 9.6 0.00021 32.3 3.1 32 39-70 164-197 (351)
50 PF07131 DUF1382: Protein of u 53.2 6.4 0.00014 25.4 0.7 22 50-71 16-37 (61)
51 cd04911 ACT_AKiii-YclM-BS_1 AC 52.5 13 0.00029 24.7 2.2 20 50-69 22-41 (76)
52 PF00107 ADH_zinc_N: Zinc-bind 51.4 28 0.0006 23.4 3.8 29 38-66 15-43 (130)
53 PF06574 FAD_syn: FAD syntheta 50.3 19 0.0004 26.6 2.9 39 43-83 61-99 (157)
54 KOG0415 Predicted peptidyl pro 46.0 62 0.0013 28.1 5.7 68 9-91 151-219 (479)
55 cd03055 GST_N_Omega GST_N fami 45.7 53 0.0012 21.2 4.4 31 38-68 19-52 (89)
56 KOG3332 N-acetylglucosaminyl p 43.1 93 0.002 25.2 6.0 38 45-82 82-126 (247)
57 PF08373 RAP: RAP domain; Int 42.4 20 0.00044 21.4 1.8 21 44-64 18-38 (58)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 41.1 1E+02 0.0022 22.6 5.7 31 36-66 57-102 (166)
59 PF02254 TrkA_N: TrkA-N domain 40.6 57 0.0012 21.5 4.0 30 35-64 87-116 (116)
60 cd03054 GST_N_Metaxin GST_N fa 40.5 47 0.001 20.2 3.3 30 40-69 10-42 (72)
61 COG4073 Uncharacterized protei 39.7 17 0.00037 28.3 1.3 32 39-70 119-152 (198)
62 COG1986 Inosine/xanthosine tri 37.4 1.9E+02 0.0042 22.3 7.3 59 38-96 2-64 (175)
63 PF04405 ScdA_N: Domain of Unk 35.3 18 0.00039 22.6 0.7 21 43-63 9-29 (56)
64 cd03027 GRX_DEP Glutaredoxin ( 35.3 41 0.0009 20.7 2.5 17 47-63 15-31 (73)
65 PF15278 Sec3_C_2: Sec3 exocys 33.7 23 0.0005 24.0 1.1 32 76-115 29-62 (86)
66 PRK08238 hypothetical protein; 33.7 1.8E+02 0.0039 25.4 6.8 33 36-69 87-122 (479)
67 TIGR02190 GlrX-dom Glutaredoxi 32.3 44 0.00095 21.2 2.2 28 38-65 8-40 (79)
68 PRK07143 hypothetical protein; 32.3 69 0.0015 26.1 3.8 38 45-84 66-103 (279)
69 PRK11590 hypothetical protein; 32.1 44 0.00095 25.1 2.6 33 37-69 112-148 (211)
70 cd03028 GRX_PICOT_like Glutare 31.8 1.1E+02 0.0024 19.9 4.2 28 38-65 8-45 (90)
71 PRK05627 bifunctional riboflav 31.1 69 0.0015 26.3 3.7 36 46-83 72-107 (305)
72 PF00462 Glutaredoxin: Glutare 31.1 31 0.00068 20.4 1.3 22 48-69 14-35 (60)
73 TIGR02189 GlrX-like_plant Glut 30.3 57 0.0012 21.9 2.6 29 38-66 8-41 (99)
74 cd03045 GST_N_Delta_Epsilon GS 29.5 89 0.0019 18.8 3.3 19 51-69 17-35 (74)
75 cd03041 GST_N_2GST_N GST_N fam 29.3 1.2E+02 0.0026 18.9 3.9 27 39-65 3-32 (77)
76 PRK10824 glutaredoxin-4; Provi 29.3 85 0.0018 22.2 3.5 27 38-64 15-51 (115)
77 cd03080 GST_N_Metaxin_like GST 29.2 76 0.0016 19.6 2.9 25 43-67 14-41 (75)
78 cd02064 FAD_synthetase_N FAD s 28.8 72 0.0016 23.6 3.2 38 45-84 57-94 (180)
79 PRK10329 glutaredoxin-like pro 28.1 67 0.0015 20.8 2.6 19 48-66 16-34 (81)
80 cd03052 GST_N_GDAP1 GST_N fami 27.9 92 0.002 19.4 3.2 23 46-68 11-34 (73)
81 cd03051 GST_N_GTT2_like GST_N 27.5 87 0.0019 18.5 2.9 24 46-69 11-35 (74)
82 TIGR02432 lysidine_TilS_N tRNA 27.2 2.4E+02 0.0053 20.3 6.6 23 47-69 48-70 (189)
83 cd03029 GRX_hybridPRX5 Glutare 26.9 75 0.0016 19.4 2.6 19 48-66 16-34 (72)
84 PF00673 Ribosomal_L5_C: ribos 26.1 39 0.00085 23.0 1.2 32 23-60 62-94 (95)
85 COG3688 Predicted RNA-binding 26.1 87 0.0019 24.1 3.2 32 81-121 28-59 (173)
86 cd02410 archeal_CPSF_KH The ar 25.8 28 0.00061 26.0 0.5 19 39-57 126-144 (145)
87 cd03050 GST_N_Theta GST_N fami 24.6 1.7E+02 0.0038 17.7 4.1 26 44-69 9-35 (76)
88 PRK15113 glutathione S-transfe 24.2 1.5E+02 0.0033 22.0 4.3 22 47-68 19-41 (214)
89 TIGR01449 PGP_bact 2-phosphogl 23.5 2.8E+02 0.006 20.0 5.5 27 37-63 101-131 (213)
90 cd03047 GST_N_2 GST_N family, 23.3 1.3E+02 0.0028 18.2 3.2 24 44-67 9-33 (73)
91 cd03059 GST_N_SspA GST_N famil 23.3 1.7E+02 0.0038 17.3 4.2 28 40-67 3-33 (73)
92 TIGR00365 monothiol glutaredox 22.8 1.7E+02 0.0038 19.4 4.0 27 38-64 12-48 (97)
93 PF01171 ATP_bind_3: PP-loop f 22.4 2.4E+02 0.0053 20.5 5.0 18 50-67 51-68 (182)
94 PF08557 Lipid_DES: Sphingolip 22.3 53 0.0011 19.3 1.1 11 46-56 16-26 (39)
95 PRK09880 L-idonate 5-dehydroge 22.2 1.3E+02 0.0028 23.9 3.7 26 39-64 196-221 (343)
96 PLN02473 glutathione S-transfe 22.0 1.1E+02 0.0023 22.5 3.0 25 44-68 11-36 (214)
97 TIGR01548 HAD-SF-IA-hyp1 haloa 21.5 1.4E+02 0.0031 21.7 3.6 23 37-59 122-146 (197)
98 cd00570 GST_N_family Glutathio 21.2 1.2E+02 0.0026 17.0 2.6 21 50-70 16-36 (71)
99 TIGR02194 GlrX_NrdH Glutaredox 21.1 1.2E+02 0.0026 18.6 2.7 18 48-65 14-31 (72)
100 PRK10222 PTS system L-ascorbat 21.1 82 0.0018 20.9 2.0 22 50-71 8-29 (85)
101 TIGR01162 purE phosphoribosyla 21.0 1.1E+02 0.0023 23.2 2.8 27 40-66 3-34 (156)
102 PF01939 DUF91: Protein of unk 20.9 97 0.0021 24.7 2.7 31 40-70 187-217 (228)
103 TIGR01990 bPGM beta-phosphoglu 20.9 2.6E+02 0.0056 19.6 4.8 28 36-63 102-131 (185)
104 COG0637 Predicted phosphatase/ 20.7 1.3E+02 0.0028 22.9 3.3 27 38-64 103-133 (221)
105 PRK09424 pntA NAD(P) transhydr 20.5 4.4E+02 0.0095 23.4 6.9 27 39-65 190-216 (509)
No 1
>PRK14368 Maf-like protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=173.02 Aligned_cols=79 Identities=35% Similarity=0.419 Sum_probs=72.4
Q ss_pred CCCCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceE
Q 033281 35 SSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTG 114 (122)
Q Consensus 35 ~~~~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTV 114 (122)
|.+.+|||||+||||++||+++|++|+++++++||+.++..+|.+++.++|+.||++++++.+ +.+|||||||
T Consensus 2 ~~~~~lILAS~SprR~eLL~~~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTv 74 (193)
T PRK14368 2 MANSPIVLASASPRRSELLASAGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAALAE-------GRFFIGADTI 74 (193)
T ss_pred CCCCcEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCcE
Confidence 344789999999999999999999999999999999888889999999999999999988743 5899999999
Q ss_pred EEecce
Q 033281 115 LFEVIS 120 (122)
Q Consensus 115 Vv~d~~ 120 (122)
|++|+.
T Consensus 75 V~~~g~ 80 (193)
T PRK14368 75 VVCDGE 80 (193)
T ss_pred EEECCE
Confidence 999974
No 2
>PRK02141 Maf-like protein; Reviewed
Probab=99.93 E-value=1.6e-25 Score=173.87 Aligned_cols=79 Identities=32% Similarity=0.435 Sum_probs=72.5
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
.+|||||+||||++||+++|++|+++++++||+..+.++|.+++.++|+.||+++++++.. .++.+||||||||++
T Consensus 9 ~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~l~~----~~~~iVI~aDTvV~~ 84 (207)
T PRK02141 9 PRLILASSSRYRRELLERLRLPFDVVSPDIDETPLAGETPAATALRLAAAKARAVAATIDA----PPGALVIGSDQVATF 84 (207)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcc----CCCCEEEEeCeEEEE
Confidence 7899999999999999999999999999999998888899999999999999999987632 246899999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 85 ~g~ 87 (207)
T PRK02141 85 DGL 87 (207)
T ss_pred CCE
Confidence 974
No 3
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=99.93 E-value=1.7e-25 Score=170.79 Aligned_cols=76 Identities=39% Similarity=0.548 Sum_probs=71.1
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
++|||||+||||++||+++|++|+++|++|||+..+..+|.+|+.++|+.||++++++++ +.+||||||||++
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~ 75 (183)
T TIGR00172 3 KELILASQSPRRKELLEELGISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQAVAELLA-------DALIIGADTVVIL 75 (183)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEE
Confidence 579999999999999999999999999999999988889999999999999999988764 4799999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 76 ~g~ 78 (183)
T TIGR00172 76 DGE 78 (183)
T ss_pred CCE
Confidence 975
No 4
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.8e-25 Score=172.30 Aligned_cols=77 Identities=39% Similarity=0.607 Sum_probs=72.4
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
++|||||+||||++||+++||+|+++++||||+..+...|.+||+++|++||++++.+++ ++.+||||||||++
T Consensus 3 ~~LiLAS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~------~~~~VigaDtvv~l 76 (193)
T COG0424 3 PRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLP------PDALVIGADTVVVL 76 (193)
T ss_pred ccEEEecCCHHHHHHHHHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC------CCCEEEecCeEEEE
Confidence 689999999999999999999999999999999988777999999999999999999986 25899999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 77 dgr 79 (193)
T COG0424 77 DGR 79 (193)
T ss_pred CCE
Confidence 985
No 5
>PRK04056 Maf-like protein; Reviewed
Probab=99.92 E-value=4.3e-25 Score=168.27 Aligned_cols=76 Identities=32% Similarity=0.404 Sum_probs=70.3
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
.|||||+||||++||+++|++|++++++|||+..+..+|.+|+.++|+.||++++++++. +.+||||||||++|
T Consensus 1 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~------~~~vI~aDTvV~~~ 74 (180)
T PRK04056 1 MIILASSSSTRANLLKEAGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKLEQFLKKYGN------ECNLLVADSVVSCG 74 (180)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCC------CCEEEEeCEEEEEC
Confidence 389999999999999999999999999999998888899999999999999999998642 36999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 75 g~ 76 (180)
T PRK04056 75 NK 76 (180)
T ss_pred CE
Confidence 74
No 6
>PRK14367 Maf-like protein; Provisional
Probab=99.92 E-value=5e-25 Score=170.49 Aligned_cols=82 Identities=32% Similarity=0.370 Sum_probs=72.0
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
+|||||+||||++||+++|++|++++++|||+.....+|.+|+.++|+.||+++++.+.......++.+||||||||++|
T Consensus 3 ~iILAS~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~vI~aDTvV~~d 82 (202)
T PRK14367 3 TLYLGSNSPRRMEILTQLGYRVVKLPAGIDETVKAGETPARYVQRMAEEKNRTALTLFCETNGTMPDFPLITADTCVVSD 82 (202)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhccccccCCCCEEEEeCcEEEEC
Confidence 79999999999999999999999999999999888889999999999999999988753211112467999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 83 g~ 84 (202)
T PRK14367 83 GI 84 (202)
T ss_pred CE
Confidence 84
No 7
>PRK00234 Maf-like protein; Reviewed
Probab=99.92 E-value=4e-25 Score=169.70 Aligned_cols=75 Identities=33% Similarity=0.391 Sum_probs=70.3
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
+|||||+||||++||+++|++|++++++|||+.++..+|.+|+.++|+.||++++++++ +.+||||||||++|
T Consensus 3 ~iILAS~SprR~elL~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~~ 75 (192)
T PRK00234 3 PLLLASSSPYRRELLARLRLPFTWASPDIDESHRPDESAEELVRRLARQKAEALAGSHP-------QHLIIGSDQVAVLG 75 (192)
T ss_pred CEEEecCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEEeC
Confidence 69999999999999999999999999999999988889999999999999999988653 47999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 76 g~ 77 (192)
T PRK00234 76 GQ 77 (192)
T ss_pred CE
Confidence 75
No 8
>PRK00078 Maf-like protein; Reviewed
Probab=99.92 E-value=5.7e-25 Score=168.86 Aligned_cols=78 Identities=35% Similarity=0.473 Sum_probs=70.1
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEE
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR-KDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLF 116 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~-~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv 116 (122)
|+|||||+||||++||+++|++|+++++++||+.+. ..+|.+++.++|+.||+++++++.. ++.+||||||||+
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~~v~~~~~~-----~~~lvI~aDTvV~ 75 (192)
T PRK00078 1 MKIILASASERRQELLKRILEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKARSVSKKLDQ-----ESSIVIGCDTIVA 75 (192)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCEEEEeCeEEE
Confidence 579999999999999999999999999999999765 4689999999999999999887632 3479999999999
Q ss_pred ecce
Q 033281 117 EVIS 120 (122)
Q Consensus 117 ~d~~ 120 (122)
+|+.
T Consensus 76 ~~g~ 79 (192)
T PRK00078 76 FNGK 79 (192)
T ss_pred ECCE
Confidence 9974
No 9
>PRK00148 Maf-like protein; Reviewed
Probab=99.92 E-value=5.5e-25 Score=169.29 Aligned_cols=76 Identities=33% Similarity=0.423 Sum_probs=70.7
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
++|||||+||||++||+++|++|++++++|||+.+...+|.+++.++|+.||++++++++ +.+||||||||++
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~ 73 (194)
T PRK00148 1 TRLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIAASSPSELVQALARAKAEAVAENAP-------DAVVLGCDSMLLI 73 (194)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCcEEEE
Confidence 469999999999999999999999999999999888889999999999999999988653 4799999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 74 ~g~ 76 (194)
T PRK00148 74 DGR 76 (194)
T ss_pred CCE
Confidence 974
No 10
>PRK00032 Maf-like protein; Reviewed
Probab=99.92 E-value=7e-25 Score=168.29 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=70.5
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
+|||||+||||++||+++|++|+++|+++||+..+..+|.+++.++|+.||+++.+++. ++.+||||||||++|
T Consensus 3 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~------~~~~vI~aDTvV~~~ 76 (190)
T PRK00032 3 SLYLASGSPRRRELLTQLGVPFEVLVPGIEEQRQPGESAQQYVERLARDKAQAGVALAP------QDLPVLGADTIVVLD 76 (190)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------CCCEEEEeCeEEEEC
Confidence 69999999999999999999999999999999888889999999999999999988652 357999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 77 g~ 78 (190)
T PRK00032 77 GE 78 (190)
T ss_pred CE
Confidence 85
No 11
>PRK00884 Maf-like protein; Reviewed
Probab=99.92 E-value=6.8e-25 Score=168.90 Aligned_cols=76 Identities=29% Similarity=0.415 Sum_probs=70.5
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
.+|||||+||||++||+++|++|+++++++||+..+..+|.+++.++|+.||++++++++ +.+||||||||++
T Consensus 2 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~VI~aDTvV~~ 74 (194)
T PRK00884 2 PQLILASTSPYRRALLEKLQLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQSLASRYP-------DHLIIGSDQVCVL 74 (194)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEEE
Confidence 369999999999999999999999999999999888889999999999999999988653 4799999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 75 ~g~ 77 (194)
T PRK00884 75 DGE 77 (194)
T ss_pred CCE
Confidence 974
No 12
>PRK04425 Maf-like protein; Reviewed
Probab=99.92 E-value=8.1e-25 Score=168.73 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=71.0
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
++|||||+||||++||+++|++|++++++|||+..+.++|.+++.++|+.||+++.++++ +.+||||||||++
T Consensus 5 ~~iILAS~SprR~elL~~~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~-------~~lvI~aDTvV~~ 77 (196)
T PRK04425 5 LPLVLGTSSVFRREQMERLGIAFQAASPDFDETPMLGESAPQTALRLAEGKARSLTGRFP-------EALIVGADQVAWC 77 (196)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEEE
Confidence 689999999999999999999999999999999988889999999999999999987653 4799999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 78 ~g~ 80 (196)
T PRK04425 78 DGR 80 (196)
T ss_pred CCE
Confidence 974
No 13
>PRK04694 Maf-like protein; Reviewed
Probab=99.92 E-value=1.1e-24 Score=167.23 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=71.4
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
+|||||+||||++||+++|++|+++++|+||+..+..+|.+|+.++|..||+++++++... .++.+||||||||++|
T Consensus 1 mlILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~---~~~~lvI~aDTvv~~~ 77 (190)
T PRK04694 1 MLYLASRSPRRRELLQRLDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAHAGLALVQAA---DADAIVLGSDTEVVLG 77 (190)
T ss_pred CEEEcCCCHHHHHHHHHCCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc---CCCCEEEEeCeEEEEC
Confidence 3899999999999999999999999999999988888999999999999999998876421 2468999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 78 g~ 79 (190)
T PRK04694 78 ER 79 (190)
T ss_pred CE
Confidence 85
No 14
>PRK02478 Maf-like protein; Reviewed
Probab=99.91 E-value=1.4e-24 Score=167.58 Aligned_cols=76 Identities=36% Similarity=0.538 Sum_probs=69.0
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEc
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR------KDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITA 111 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~------~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgA 111 (122)
++|||||+||||++||+++|++|+++++++||+.+. ..+|.+++.++|+.||++|+.+++ +.+||||
T Consensus 3 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~ivI~a 75 (199)
T PRK02478 3 VKLILASKSPFRRALLENAGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAIDVSERFP-------GALVIGC 75 (199)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHHCC-------CCEEEEe
Confidence 579999999999999999999999999999998654 367999999999999999988754 4799999
Q ss_pred ceEEEecce
Q 033281 112 DTGLFEVIS 120 (122)
Q Consensus 112 DTVVv~d~~ 120 (122)
||||++|+.
T Consensus 76 DTvV~~~g~ 84 (199)
T PRK02478 76 DQTMSLGDE 84 (199)
T ss_pred CeEEEECCE
Confidence 999999974
No 15
>PRK01839 Maf-like protein; Reviewed
Probab=99.91 E-value=2.4e-24 Score=167.45 Aligned_cols=88 Identities=32% Similarity=0.412 Sum_probs=73.8
Q ss_pred ccccCCCCCCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 033281 29 GMARSESSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKS------IRKDKPEDLVMALAEAKAEAIRSRLQSAGQL 102 (122)
Q Consensus 29 ~~~~~~~~~~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~------~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~ 102 (122)
+|+.+.+ .+|||||+||||++||+++|++|+++++||||+. ..+++|.+|+.++|+.||+++.+++....
T Consensus 3 ~~~~~~~--~~lILAS~SprR~elL~~~gi~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~l~~~~-- 78 (209)
T PRK01839 3 SMAAPLF--PFLYLASQSPRRQELLQQLGVRFELLLPRPDEDAEALEAELPGEAPDDYVQRVCVAKAEAARARLVARG-- 78 (209)
T ss_pred CcccccC--CCEEEeCCCHHHHHHHHHCCCCeEEeCCCCCcCccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 4665532 5799999999999999999999999999999974 34568999999999999999998874211
Q ss_pred CCCCEEEEcceEEEecce
Q 033281 103 NPTTLLITADTGLFEVIS 120 (122)
Q Consensus 103 ~~~~lVIgADTVVv~d~~ 120 (122)
.++.+||||||||++|+.
T Consensus 79 ~~~~lvI~aDTvV~~~g~ 96 (209)
T PRK01839 79 LPAAPVLVADTTVTIDGA 96 (209)
T ss_pred CCCCEEEEeCeEEEECCE
Confidence 245799999999999985
No 16
>PRK14366 Maf-like protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=166.70 Aligned_cols=77 Identities=30% Similarity=0.398 Sum_probs=70.1
Q ss_pred CCeEEEccCCHHHHHHHHhcCC-ceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEE
Q 033281 37 PIKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGL 115 (122)
Q Consensus 37 ~~~iILASsSPrR~eLL~~lGi-~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVV 115 (122)
..+|||||+||||++||+++|+ .|++++++|||+..+..+|.+|+.++|+.||+++.++++ +.+||||||||
T Consensus 4 ~~~iILAS~SprR~elL~~~G~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~ADTvV 76 (195)
T PRK14366 4 FDNLILASSSKQRLALLEQIGVVPGEIVSPDIDESPLKKELPKDYSIRMAKEKAEKVQSLRP-------DKFVLGADTVV 76 (195)
T ss_pred CCeEEEeCCCHHHHHHHHhCCCCCCEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEE
Confidence 3579999999999999999999 569999999999888889999999999999999988643 47999999999
Q ss_pred Eecce
Q 033281 116 FEVIS 120 (122)
Q Consensus 116 v~d~~ 120 (122)
++|+.
T Consensus 77 ~~~g~ 81 (195)
T PRK14366 77 CCGRR 81 (195)
T ss_pred EECCE
Confidence 99974
No 17
>PRK00648 Maf-like protein; Reviewed
Probab=99.91 E-value=2.3e-24 Score=165.43 Aligned_cols=77 Identities=44% Similarity=0.508 Sum_probs=70.4
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEE-eCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEE
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVV-TAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLF 116 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi-~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv 116 (122)
++|||||+||||++||+++|++|+++ ++++||+..+..+|.+++.++|+.||+++++++. ++.+||||||||+
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~------~~~~VI~aDTvV~ 76 (191)
T PRK00648 3 YKIILASSSPRRKEILEGFRIPFEVVPSPFVEESYPYSLDPEEITLELARLKAEAVRSDLF------PDELIITADTIVW 76 (191)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC------CCCEEEEeCeEEE
Confidence 67999999999999999999999999 7899999877889999999999999999988652 3589999999999
Q ss_pred ecce
Q 033281 117 EVIS 120 (122)
Q Consensus 117 ~d~~ 120 (122)
+|+.
T Consensus 77 ~~g~ 80 (191)
T PRK00648 77 YDGK 80 (191)
T ss_pred ECCE
Confidence 9984
No 18
>PRK01526 Maf-like protein; Reviewed
Probab=99.91 E-value=2.5e-24 Score=166.95 Aligned_cols=79 Identities=33% Similarity=0.385 Sum_probs=71.3
Q ss_pred CCCeEEEccCCHHHHHHHHhcCC-ceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceE
Q 033281 36 SPIKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTG 114 (122)
Q Consensus 36 ~~~~iILASsSPrR~eLL~~lGi-~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTV 114 (122)
+.++|||||+||||++||+++|+ .|+++++||||+.++..+|.+++.++|+.||++|+++++ ++.+|||||||
T Consensus 6 ~~~~lILAS~SprR~elL~~~g~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~------~~~~VI~aDTv 79 (205)
T PRK01526 6 KNLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKIASQIE------ESAIIIAADTV 79 (205)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCCCceEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCEEEEeCeE
Confidence 34789999999999999999999 567999999999988889999999999999999998764 25799999999
Q ss_pred EEecce
Q 033281 115 LFEVIS 120 (122)
Q Consensus 115 Vv~d~~ 120 (122)
|++|+.
T Consensus 80 V~~~g~ 85 (205)
T PRK01526 80 AAVGRR 85 (205)
T ss_pred EEECCE
Confidence 999974
No 19
>PRK14363 Maf-like protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=167.19 Aligned_cols=76 Identities=30% Similarity=0.437 Sum_probs=68.9
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
++|||||+||||++||+++|++|+++|+++||+.. .+|.+++.++|+.||+++.+++.. ++.+||||||||++
T Consensus 1 ~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~--~~P~~~v~~lA~~KA~~v~~~~~~-----~~~lvI~aDTVV~~ 73 (204)
T PRK14363 1 MRIILASSSPRRRQLMELLGIEFEVEKPDVEEEFL--ESPEETVRELSLRKAEWVFKKRKE-----EEILVIGSDTVVVL 73 (204)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHhccC-----CCCEEEEeCeEEEE
Confidence 47999999999999999999999999999999974 679999999999999999887531 35899999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 74 ~g~ 76 (204)
T PRK14363 74 DGN 76 (204)
T ss_pred CCE
Confidence 974
No 20
>PRK01441 Maf-like protein; Reviewed
Probab=99.91 E-value=3.2e-24 Score=166.42 Aligned_cols=82 Identities=32% Similarity=0.353 Sum_probs=71.8
Q ss_pred CeEEEccCCHHHHHHHHhcCCceE-EEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEE
Q 033281 38 IKIILGSSSMARKEILAEMGYEFT-VVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLF 116 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~Fe-Vi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv 116 (122)
++|||||+||||++||+++|++|. ++|++|||+.++..+|.+|+.++|+.||+++++++..+ ...++.+||||||||+
T Consensus 5 ~~iILAS~SprR~elL~~~Gi~f~~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~-~~~~~~~vI~aDTvV~ 83 (207)
T PRK01441 5 PKLVLASGSPRRVELLNQAGIEPDRLMPADIDETPKRAEHPRSLARRLSREKAEAALEALQGD-DDWRGAYILAADTVVA 83 (207)
T ss_pred CcEEEeCCCHHHHHHHHhcCCCCeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccc-ccCCCcEEEecCEEEE
Confidence 689999999999999999999875 78999999988888999999999999999999876421 1124579999999999
Q ss_pred ecce
Q 033281 117 EVIS 120 (122)
Q Consensus 117 ~d~~ 120 (122)
+|+.
T Consensus 84 ~~g~ 87 (207)
T PRK01441 84 VGRR 87 (207)
T ss_pred ECCE
Confidence 9974
No 21
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=99.91 E-value=2.2e-24 Score=164.04 Aligned_cols=75 Identities=47% Similarity=0.678 Sum_probs=70.1
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEecc
Q 033281 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEVI 119 (122)
Q Consensus 40 iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d~ 119 (122)
|||||+||||++||+++|++|+++++++||+.++..+|.+|+.++|++||+++.++++ ++.+||||||||++|+
T Consensus 1 iILaS~SprR~elL~~~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~------~~~liI~aDtvv~~~g 74 (180)
T cd00555 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGESPEDYVLRLAEAKAEAVAARLP------PDALVIGADTVVVLDG 74 (180)
T ss_pred CEECCCCHHHHHHHHhCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC------CCCEEEEecEEEEECC
Confidence 6999999999999999999999999999999998889999999999999999999864 2479999999999997
Q ss_pred e
Q 033281 120 S 120 (122)
Q Consensus 120 ~ 120 (122)
.
T Consensus 75 ~ 75 (180)
T cd00555 75 R 75 (180)
T ss_pred E
Confidence 4
No 22
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=99.91 E-value=1.5e-24 Score=166.82 Aligned_cols=77 Identities=45% Similarity=0.653 Sum_probs=54.0
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CEEEEcceEE
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKD-KPEDLVMALAEAKAEAIRSRLQSAGQLNPT-TLLITADTGL 115 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~-~p~d~v~~lA~~KA~av~~~l~~~~~~~~~-~lVIgADTVV 115 (122)
|+|||||+||||++||+++|++|++++++|||+..... +|.+++.++|.+||+++..++.. + .+||||||||
T Consensus 1 M~iILaS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~~p~~~v~~lA~~Ka~~~~~~~~~------~~~~vi~aDTvv 74 (195)
T PF02545_consen 1 MRIILASSSPRRRELLKQLGINFEVIPSDIDEDAIRKESDPEEYVQRLAEAKAEAVVSKLYP------DSAIVIGADTVV 74 (195)
T ss_dssp --EEE----HHHHHHHHCTT--EEE---------GCCSSSHHHHHHHHHHHHHHHHHHCCHC------CHSEEEEEEEEE
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCccccCHHHHHHHHHHHHHHHHHhhhcc------cceEEEEEeeee
Confidence 58999999999999999999999999999999986555 69999999999999998887753 4 8999999999
Q ss_pred Eecce
Q 033281 116 FEVIS 120 (122)
Q Consensus 116 v~d~~ 120 (122)
++|+.
T Consensus 75 ~~~g~ 79 (195)
T PF02545_consen 75 VCDGE 79 (195)
T ss_dssp ECTTE
T ss_pred eeeeE
Confidence 99975
No 23
>PRK14362 Maf-like protein; Provisional
Probab=99.91 E-value=5e-24 Score=165.57 Aligned_cols=76 Identities=33% Similarity=0.392 Sum_probs=69.3
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEE
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEK-SIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLF 116 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~-~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv 116 (122)
.+|||||+||||++||+++|++|+++++++||+ ...+.+|.+|+.++|+.||+++.++++ +.+||||||||+
T Consensus 12 ~~iILAS~SprR~eLL~~~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~VI~ADTvV~ 84 (207)
T PRK14362 12 CPVVLASGSPRRREFLEQMGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKARAVAADHA-------GRLVIAADTVVA 84 (207)
T ss_pred ceEEEeCCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEE
Confidence 579999999999999999999999999999995 456678999999999999999988754 479999999999
Q ss_pred ecce
Q 033281 117 EVIS 120 (122)
Q Consensus 117 ~d~~ 120 (122)
+|+.
T Consensus 85 ~~g~ 88 (207)
T PRK14362 85 LDGM 88 (207)
T ss_pred eCCE
Confidence 9985
No 24
>PRK14365 Maf-like protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=164.73 Aligned_cols=75 Identities=31% Similarity=0.460 Sum_probs=70.0
Q ss_pred eEEEccCCHHHHHHHHhc-CCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEe
Q 033281 39 KIILGSSSMARKEILAEM-GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFE 117 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~l-Gi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~ 117 (122)
+|||||+||||++||+++ |++|++++++|||+.....+|.+++.++|..||+++.++++ +.+||||||||++
T Consensus 3 ~iILaSsSprR~elL~~~~g~~f~vi~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~ 75 (197)
T PRK14365 3 RIILASASPRRKELLKQLIGDNFLVYPSSYEEPPQPGLDPEELLLKHSLEKARDVAKHFD-------SGIIISADTSVFC 75 (197)
T ss_pred CEEEeCCCHHHHHHHhcCcCcCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEE
Confidence 699999999999999995 99999999999999988889999999999999999988753 4799999999999
Q ss_pred cce
Q 033281 118 VIS 120 (122)
Q Consensus 118 d~~ 120 (122)
|+.
T Consensus 76 ~g~ 78 (197)
T PRK14365 76 NGE 78 (197)
T ss_pred CCE
Confidence 985
No 25
>PRK14361 Maf-like protein; Provisional
Probab=99.90 E-value=5.4e-24 Score=163.06 Aligned_cols=73 Identities=33% Similarity=0.373 Sum_probs=67.2
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEecc
Q 033281 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEVI 119 (122)
Q Consensus 40 iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d~ 119 (122)
|||||+||||++||+++|++|+++++++||+. ...+|.+|+.++|+.||++++.+++ +.+||||||||++|+
T Consensus 1 lILAS~SprR~elL~~~g~~f~v~~~~~dE~~-~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~~g 72 (187)
T PRK14361 1 VILASGSPRRRELLENLGVPFQVVVSGEAEDS-TETDPARLAAELALLKARAVARLHP-------DAVVIAADTVVALGG 72 (187)
T ss_pred CEEccCCHHHHHHHHHCCCCcEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEECC
Confidence 69999999999999999999999999999997 4578999999999999999988643 479999999999998
Q ss_pred e
Q 033281 120 S 120 (122)
Q Consensus 120 ~ 120 (122)
.
T Consensus 73 ~ 73 (187)
T PRK14361 73 V 73 (187)
T ss_pred E
Confidence 5
No 26
>PRK14364 Maf-like protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=160.28 Aligned_cols=72 Identities=32% Similarity=0.407 Sum_probs=67.5
Q ss_pred EccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEecce
Q 033281 42 LGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEVIS 120 (122)
Q Consensus 42 LASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d~~ 120 (122)
|||+||||++||+++|++|+++++++||+.++..+|.+|+.++|+.||++++++++ +.+||||||||++|+.
T Consensus 1 LAS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~~g~ 72 (181)
T PRK14364 1 LASSSPRRRELLQQLGLNFEIYSPDIDESVHEGELVHQYVERLAREKAQAVLNIFP-------DSVIIAADTSLGLDGQ 72 (181)
T ss_pred CCCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEECCE
Confidence 89999999999999999999999999999988889999999999999999988653 4799999999999984
No 27
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=99.77 E-value=1.7e-18 Score=123.58 Aligned_cols=73 Identities=41% Similarity=0.551 Sum_probs=67.5
Q ss_pred EEEccCCHHHHHHHHhcC-CceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEec
Q 033281 40 IILGSSSMARKEILAEMG-YEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEV 118 (122)
Q Consensus 40 iILASsSPrR~eLL~~lG-i~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d 118 (122)
|||||+||||+++|+++| ++|+++++++||+....+ |.+++.++|..||+++.+.++ +.+||++||+|++|
T Consensus 1 iiLaS~s~~R~~~l~~~~~~~~~~~~~~i~E~~~~~~-~~~~~~~~A~~Ka~~~~~~~~-------~~~vI~~Dt~v~~~ 72 (131)
T cd00985 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGLKGE-PEDTVEELALLKARAVAERLP-------DAPVIADDTGLVVD 72 (131)
T ss_pred CEEecCChHHHHHHHhcCCCCEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHCC-------CCEEEECCcEEEEC
Confidence 699999999999999999 999999999999988777 999999999999999998764 36999999999999
Q ss_pred ce
Q 033281 119 IS 120 (122)
Q Consensus 119 ~~ 120 (122)
+.
T Consensus 73 g~ 74 (131)
T cd00985 73 GR 74 (131)
T ss_pred CE
Confidence 64
No 28
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.1e-18 Score=132.58 Aligned_cols=83 Identities=39% Similarity=0.465 Sum_probs=74.4
Q ss_pred CCCeEEEccCCHHHHHHHHhcCCceEEEeCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 36 SPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRK--DKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 36 ~~~~iILASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~--~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
+.++|||||+||||++|++.+|+++++++++|+|++++. .+|.+|+..+|.+||.++.+++.... ...+.+||+|||
T Consensus 8 ~~~riiL~S~s~rrk~i~~~~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~E-d~~~~~vi~adt 86 (209)
T KOG1509|consen 8 KGKRIILASASPRRKQILAEMGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGE-DSFPDVVISADT 86 (209)
T ss_pred cCcEEEEecCCchHHHHHHHcCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccc-cCCccccccccE
Confidence 347999999999999999999999999999999999988 79999999999999999999998532 122689999999
Q ss_pred EEEecc
Q 033281 114 GLFEVI 119 (122)
Q Consensus 114 VVv~d~ 119 (122)
|+..++
T Consensus 87 I~~~~~ 92 (209)
T KOG1509|consen 87 ITTDGG 92 (209)
T ss_pred EEEecc
Confidence 999875
No 29
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=94.02 E-value=0.48 Score=36.85 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=44.5
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEeCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEc
Q 033281 38 IKIILGSSSMARKEILAE-MG-YEFTVVTAE----IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITA 111 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lG-i~FeVi~sd----iDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgA 111 (122)
|+|++||+-+.-.+-++. ++ +.+++++.. ++|+. .-....|..||+.+++.+. .+||+=
T Consensus 1 m~i~~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~e~~E~~-------~tf~eNA~~KA~~~~~~~~--------~pviaD 65 (201)
T PRK14824 1 MKILLATTNEGKVREIKRLLSDLGIEVLSPDKKIEVEEDG-------ETFLENAYLKARAYAEFYK--------IPVLAD 65 (201)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCCEEEEcCcCCCCCCCC-------CCHHHHHHHHHHHHHHHHC--------CCEEEe
Confidence 379999999988665555 32 234555442 33321 1245578999999988763 468999
Q ss_pred ceEEEecc
Q 033281 112 DTGLFEVI 119 (122)
Q Consensus 112 DTVVv~d~ 119 (122)
||=..+|.
T Consensus 66 DSGL~vdA 73 (201)
T PRK14824 66 DSGLEVPA 73 (201)
T ss_pred ccEEEecc
Confidence 99887763
No 30
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=92.94 E-value=1 Score=34.62 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=45.3
Q ss_pred CeEEEccCCHHHHHHHHh-cCCceEEEe-C------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEE
Q 033281 38 IKIILGSSSMARKEILAE-MGYEFTVVT-A------EIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLI 109 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lGi~FeVi~-s------diDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVI 109 (122)
|+|++||+-+.-.+=++. ++-.+++++ . +++|+. .+ ....|..||+.+++.+. .+||
T Consensus 1 mki~~aT~N~~K~~E~~~il~~~~~v~~~~~~~~~~~~~E~~---~t----f~enA~~KA~~~~~~~~--------~pvl 65 (191)
T PRK14823 1 MKLVFATNNKHKLEEIRSILPEKIELLSLSDIGCHEDIPETA---DT----LEGNALLKAEYVYKKYG--------YDCF 65 (191)
T ss_pred CEEEEECCChhHHHHHHHHhcCCCEEEehhhcCCCCCCCCCC---CC----HHHHHHHHHHHHHHHHC--------CCEE
Confidence 369999999988766666 543355553 2 333321 12 44578999999988764 4599
Q ss_pred EcceEEEecc
Q 033281 110 TADTGLFEVI 119 (122)
Q Consensus 110 gADTVVv~d~ 119 (122)
+=||=..+|.
T Consensus 66 aDDSGL~v~a 75 (191)
T PRK14823 66 ADDTGLEVEA 75 (191)
T ss_pred EecCEEEEec
Confidence 9999887763
No 31
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=92.37 E-value=1.4 Score=33.58 Aligned_cols=67 Identities=21% Similarity=0.260 Sum_probs=43.0
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEeCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 38 IKIILGSSSMARKEILAE-MG-YEFTVVTAE--IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lG-i~FeVi~sd--iDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
|+|++||+-+...+-++. ++ +.+++.+.. +.|. ... -....|..||..+++.+. .+||+=||
T Consensus 1 m~i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~E~--~~~----t~~enA~~KA~~~~~~~~--------~pvlaDDS 66 (184)
T PRK14821 1 MKIYFATGNKGKVEEAKIILKPLGIEVEQIKIEYPEI--QAD----TLEEVAAFGAKWVYNKLN--------RPVIVEDS 66 (184)
T ss_pred CEEEEECCChhHHHHHHHHHhhcCcEEEECCCCCCCC--CCC----CHHHHHHHHHHHHHHHHC--------CCEEEEcC
Confidence 379999999988654444 22 234555533 2222 111 244578999999988763 46999999
Q ss_pred EEEec
Q 033281 114 GLFEV 118 (122)
Q Consensus 114 VVv~d 118 (122)
=+.+|
T Consensus 67 GL~v~ 71 (184)
T PRK14821 67 GLFIE 71 (184)
T ss_pred EEeeh
Confidence 77765
No 32
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=91.67 E-value=1.8 Score=33.46 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=43.5
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEeC-CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033281 38 IKIILGSSSMARKEILAE-MG-YEFTVVTA-EI--DEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lG-i~FeVi~s-di--DE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgAD 112 (122)
|+|++||+-+...+-++. ++ +.++++.. ++ +|-.-.+.+ ....|..||+.+++.++ .+||+=|
T Consensus 1 m~i~~aT~N~~K~~E~~~il~~~~~~i~~~~~~~~~e~~E~~~s----~~enA~~KA~~~~~~~~--------~pviaDD 68 (196)
T PRK00120 1 MKIVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTT----FVENALIKARHAAKATG--------LPALADD 68 (196)
T ss_pred CEEEEEcCCHHHHHHHHHHHhhcCCEEEehhhcCCCCCCCCCCC----HHHHHHHHHHHHHHHHC--------CCEEEEc
Confidence 479999999987655444 22 23455442 33 221111122 44578899999998774 4699999
Q ss_pred eEEEec
Q 033281 113 TGLFEV 118 (122)
Q Consensus 113 TVVv~d 118 (122)
|=..++
T Consensus 69 SGL~i~ 74 (196)
T PRK00120 69 SGLCVD 74 (196)
T ss_pred CEEEEc
Confidence 988776
No 33
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=91.21 E-value=1 Score=34.85 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.9
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEe-CCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 38 IKIILGSSSMARKEILAE-MG-YEFTVVT-AEIDEK-SIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lG-i~FeVi~-sdiDE~-~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
++|++||+-+...+-++. ++ +.+++++ .++... .++ ++. .-....|..||+.+++.++ .+||+=||
T Consensus 2 ~~i~~aT~N~~K~~E~~~iL~~~~~~i~~~~~~~~~~e~~-E~g-~t~~enA~~KA~~~~~~~~--------~pviaDDS 71 (200)
T PRK14822 2 KEIVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVE-ETG-TTFEENAILKAEAAAKALN--------KPVIADDS 71 (200)
T ss_pred CeEEEECCCHHHHHHHHHHHhhcCcEEEEchhcCCCCCCC-CCC-CCHHHHHHHHHHHHHHHHC--------CCEEEecc
Confidence 369999999988766555 32 2345554 222111 111 111 1245578899999998764 46999999
Q ss_pred EEEecc
Q 033281 114 GLFEVI 119 (122)
Q Consensus 114 VVv~d~ 119 (122)
=..+|.
T Consensus 72 GL~v~A 77 (200)
T PRK14822 72 GLEVDA 77 (200)
T ss_pred EEEEcc
Confidence 888763
No 34
>TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools.
Probab=90.74 E-value=2.3 Score=32.46 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=42.8
Q ss_pred eEEEccCCHHHHHHHHh----cCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceE
Q 033281 39 KIILGSSSMARKEILAE----MGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTG 114 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~----lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTV 114 (122)
+|++||+.+...+-++. +|+. .+...+++|-...+.+ ....|..||+.+++.+. .+||+=||=
T Consensus 1 ~i~~aT~N~~K~~E~~~il~~~~~~-~~~~~~~~~~ee~g~t----~~enA~~KA~~~~~~~~--------~pvlaDDSG 67 (184)
T TIGR00042 1 KIVFATGNPGKLKEVQSILSDLGDN-EIEQLDLGYPEETGLT----FEENALLKAKHAAKILN--------KPVIAEDSG 67 (184)
T ss_pred CEEEECCCHHHHHHHHHHHhhcCCE-EEecccCCCCCCCCCC----HHHHHHHHHHHHHHHhC--------CCeEEcccE
Confidence 48899999987654444 4432 2233555432222223 34578899999988764 468999988
Q ss_pred EEec
Q 033281 115 LFEV 118 (122)
Q Consensus 115 Vv~d 118 (122)
..+|
T Consensus 68 L~v~ 71 (184)
T TIGR00042 68 LFVD 71 (184)
T ss_pred EEEh
Confidence 8776
No 35
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=90.11 E-value=2.1 Score=32.54 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=42.2
Q ss_pred EEEccCCHHHHHHHHh----cCCceEEEe--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 40 IILGSSSMARKEILAE----MGYEFTVVT--AEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 40 iILASsSPrR~eLL~~----lGi~FeVi~--sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
|++||+.+...+-++. +|++..... .+++|... + ....|..||+.+++.+. .+||+=||
T Consensus 1 i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~~~E~~~---s----~~enA~~KA~~a~~~~~--------~pviadDs 65 (183)
T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLKDIIDIEETGS---T----FEENALLKARAAAEALG--------LPVLADDS 65 (183)
T ss_pred CEEECCCHHHHHHHHHHHhhcCcEEEEcCcCCCCCCCCC---C----HHHHHHHHHHHHHHHHC--------CCEEEecc
Confidence 5788888877654444 354433333 34444432 2 44578899999998774 46999999
Q ss_pred EEEecc
Q 033281 114 GLFEVI 119 (122)
Q Consensus 114 VVv~d~ 119 (122)
=..++.
T Consensus 66 GL~i~a 71 (183)
T cd00515 66 GLCVDA 71 (183)
T ss_pred EEEEec
Confidence 887763
No 36
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=90.05 E-value=0.56 Score=35.79 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=38.7
Q ss_pred EEEccCCHHHHHHHHh-cC-CceEEEe--------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEE
Q 033281 40 IILGSSSMARKEILAE-MG-YEFTVVT--------AEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLI 109 (122)
Q Consensus 40 iILASsSPrR~eLL~~-lG-i~FeVi~--------sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVI 109 (122)
|++||+-+...+-++. ++ +.+++++ .+++|. +.+ ....|..||+.+++.+. .+||
T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~v~~~~~~~~~~~~~~E~---~~t----~~enA~~KA~~~~~~~~--------~pvi 65 (189)
T PF01725_consen 1 IIFATGNKGKIREIQELLKPLGIEVISLIDLPEPDPEPEET---GET----FEENALIKAKAAAQQLG--------KPVI 65 (189)
T ss_dssp EEEE-S-HHHHHHHHHHCTTTTEEEEECEEECEE------B---SSS----HHHHHHHHHHHHHHHHS--------SSEE
T ss_pred CEEEcCCHHHHHHHHHHHhhcCCcEEeHHHcCccCcCCCcC---CCC----HHHHHHHHHHHHHHHhC--------CCEE
Confidence 6788888877655555 22 2344322 344444 223 44578899999999874 4599
Q ss_pred EcceEEEecc
Q 033281 110 TADTGLFEVI 119 (122)
Q Consensus 110 gADTVVv~d~ 119 (122)
+-||-..++.
T Consensus 66 ~dDSGL~v~a 75 (189)
T PF01725_consen 66 ADDSGLEVDA 75 (189)
T ss_dssp EEEEEEEEGG
T ss_pred EeCcEEeHhh
Confidence 9999888773
No 37
>PRK14826 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=88.11 E-value=5.8 Score=31.28 Aligned_cols=73 Identities=27% Similarity=0.312 Sum_probs=45.4
Q ss_pred CCCeEEEccCCHHHHHHHHh----cCCceEEEe-C------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 033281 36 SPIKIILGSSSMARKEILAE----MGYEFTVVT-A------EIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNP 104 (122)
Q Consensus 36 ~~~~iILASsSPrR~eLL~~----lGi~FeVi~-s------diDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~ 104 (122)
...+|+|||+-+.-.+-++. ++-.+++++ . ++.|+. . --...|..||+.+++.+... .+
T Consensus 7 ~~~~i~~aT~N~~K~~E~~~iL~~~~~~i~v~~~~~~~~~~~~~E~~---~----tf~eNA~~KA~~~~~~~~~~---~~ 76 (222)
T PRK14826 7 ETITIVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETE---E----TLEGNALLKADAIFELLSDR---FP 76 (222)
T ss_pred CCCEEEEEcCChhHHHHHHHHHHhcCCCeEEEehhHcCCCCCCCCCC---C----CHHHHHHHHHHHHHHHhCCc---cc
Confidence 45799999999987654444 321345554 1 232332 1 23457889999998877421 01
Q ss_pred CCEEEEcceEEEec
Q 033281 105 TTLLITADTGLFEV 118 (122)
Q Consensus 105 ~~lVIgADTVVv~d 118 (122)
..+||+=||=..+|
T Consensus 77 ~~~vlaDDSGL~vd 90 (222)
T PRK14826 77 FLIALADDTGLEVD 90 (222)
T ss_pred CCcEEEecCcEEEc
Confidence 24789999887775
No 38
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=87.56 E-value=2.4 Score=35.58 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=43.8
Q ss_pred CeEEEccCCHHHHHHHHh-cC-CceEEEeCC-CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 38 IKIILGSSSMARKEILAE-MG-YEFTVVTAE-IDEK-SIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~-lG-i~FeVi~sd-iDE~-~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
.+|+|||+-+.-.+=++. ++ +.+++++.. +.+. .++ ++- .--...|..||+++++.++ .+||+=||
T Consensus 128 ~kIv~AT~N~~K~~E~~~iL~~~~iev~~l~~~~~~~Ei~-Etg-~Tf~ENA~~KA~~aa~~~g--------~pvLADDS 197 (328)
T PRK02491 128 DTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVA-ETG-MTFEENARLKAETISRLTG--------KMVLADDS 197 (328)
T ss_pred CeEEEEcCChhHHHHHHHHHhhcCcEEEehhhcCCCCCcC-CCC-CCHHHHHHHHHHHHHHHHC--------CCEEEEcc
Confidence 589999999987654444 32 235555433 1111 011 111 1244578999999998764 45888888
Q ss_pred EEEecc
Q 033281 114 GLFEVI 119 (122)
Q Consensus 114 VVv~d~ 119 (122)
=..+|.
T Consensus 198 GL~VdA 203 (328)
T PRK02491 198 GLKVDA 203 (328)
T ss_pred EEEEcc
Confidence 777663
No 39
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=80.52 E-value=17 Score=28.29 Aligned_cols=71 Identities=21% Similarity=0.135 Sum_probs=45.9
Q ss_pred CeEEEccCCHHHHHHHHh----cCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 38 IKIILGSSSMARKEILAE----MGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~----lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
++|+|||+=+--.+=++. .|++++......+|- .-+.....-...|..||+++++.. ..+||+=||
T Consensus 2 ~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~--e~eEtg~tf~enA~~Ka~~~a~~~--------g~pviaDDS 71 (194)
T COG0127 2 MKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEI--EVEETGLTFEENALLKARAAAKAT--------GLPVIADDS 71 (194)
T ss_pred cEEEEEcCChHHHHHHHHHhcccCceEEEccccCCCC--CccchhhHHHHHHHHHHHHHHhhc--------CCcEEEecC
Confidence 589999999877554444 345554443333332 112234566778999999998863 366888888
Q ss_pred EEEec
Q 033281 114 GLFEV 118 (122)
Q Consensus 114 VVv~d 118 (122)
=+.+|
T Consensus 72 GL~v~ 76 (194)
T COG0127 72 GLCVD 76 (194)
T ss_pred ceEEe
Confidence 77665
No 40
>PRK14825 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=79.47 E-value=17 Score=28.02 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=43.0
Q ss_pred eEEEccCCHHHHHHHHh-cC-CceEEE-eCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcce
Q 033281 39 KIILGSSSMARKEILAE-MG-YEFTVV-TAE--IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~-lG-i~FeVi-~sd--iDE~~~~~~~p~d~v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADT 113 (122)
+|++||+-+.-.+-++. ++ ..+++. ..+ ++|+. .-....|..||+.+++.+.. ..+||+=||
T Consensus 3 ~i~~aT~N~~K~~E~~~il~~~~~~i~~~~~~~~~E~~-------~tf~enA~~KA~~~~~~~~~------~~pvlaDDS 69 (199)
T PRK14825 3 TLFFATTNINKINEVKQILDIPNIKIEIPQNFDIKETG-------KTFKENSLLKAKALFEILNN------KQPVFSEDS 69 (199)
T ss_pred eEEEECCChhHHHHHHHHHhhcCceEeecccCCCCCCC-------CCHHHHHHHHHHHHHHHHCC------CCcEEEecC
Confidence 69999999987665555 44 233332 233 33332 12455789999999887641 246888888
Q ss_pred EEEec
Q 033281 114 GLFEV 118 (122)
Q Consensus 114 VVv~d 118 (122)
=..+|
T Consensus 70 GL~vd 74 (199)
T PRK14825 70 GLCIE 74 (199)
T ss_pred eEEEh
Confidence 77765
No 41
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=73.63 E-value=2.7 Score=35.00 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=33.8
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCCCCC--CCCHHHHHHHHHHHH
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKSIR--KDKPEDLVMALAEAK 88 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~~~~--~~~p~d~v~~lA~~K 88 (122)
--++++||.||+..|+.+..++++.+ -|+|-.+.+ ...-..+++..|..|
T Consensus 120 Ga~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~~g~yDAIILA~AGL~ 173 (307)
T COG0181 120 GAVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAAAGLK 173 (307)
T ss_pred CCccccchHHHHHHHHHhCCCCeEEeccCcHHHHHHHhhcCCccHHHHHHHHHH
Confidence 46889999999999999988776665 777765422 222334555444443
No 42
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.
Probab=70.76 E-value=3.8 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=17.2
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT 64 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~ 64 (122)
.-+.|++|+||+..|+.+.-++++++
T Consensus 120 ga~IGTsS~RR~aql~~~~pdl~~~~ 145 (215)
T PF01379_consen 120 GARIGTSSLRRRAQLKRLRPDLEVVP 145 (215)
T ss_dssp T-EEE---HHHHHHHHHH-TTSEEE-
T ss_pred ccccCCCCHHHHHHHHHhccCCeEEE
Confidence 47899999999999999887777665
No 43
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=70.30 E-value=4.7 Score=33.23 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=25.5
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEe--CCCCCC
Q 033281 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (122)
Q Consensus 40 iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~ 70 (122)
-+.|++|+||+..|+.+..++++++ -|+|..
T Consensus 118 a~IGTsS~RR~aql~~~rpdl~~~~iRGNV~TR 150 (292)
T cd00494 118 SVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTR 150 (292)
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEEcCCCHHHH
Confidence 5789999999999999887777765 676664
No 44
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=69.54 E-value=6.8 Score=29.85 Aligned_cols=29 Identities=38% Similarity=0.519 Sum_probs=24.0
Q ss_pred CeEEEccCCHHH-----HHHHHhcCCceEEEeCC
Q 033281 38 IKIILGSSSMAR-----KEILAEMGYEFTVVTAE 66 (122)
Q Consensus 38 ~~iILASsSPrR-----~eLL~~lGi~FeVi~sd 66 (122)
--||.+|.|-+. .++|+.+|++|++....
T Consensus 5 V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvS 38 (162)
T COG0041 5 VGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVS 38 (162)
T ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 359999999887 58999999999876543
No 45
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=67.60 E-value=5.8 Score=32.76 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=26.4
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEe--CCCCCC
Q 033281 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (122)
Q Consensus 40 iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~ 70 (122)
-+.|++|+||+..|+.+..++++++ -|+|..
T Consensus 122 a~IGTsS~RR~aql~~~~Pdl~~~~iRGNV~TR 154 (295)
T PRK00072 122 AVVGTSSLRRQAQLLALRPDLEIKPLRGNVDTR 154 (295)
T ss_pred CEEecCcHHHHHHHHHHCcCCEEEECccCHHHH
Confidence 5789999999999999988888887 666654
No 46
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=64.27 E-value=7.4 Score=32.10 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.8
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCC
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~ 70 (122)
--+.|++|+||+..|+.+..+.++++ -|+|-.
T Consensus 117 ga~VGTsS~RR~aql~~~rPdl~i~~iRGNV~TR 150 (292)
T TIGR00212 117 GAKVGTSSLRRKAQLKAIRPDLKIEPLRGNIDTR 150 (292)
T ss_pred CCEeccCCHHHHHHHHHHCCCCEEEECcCCHHHH
Confidence 35889999999999999988777776 566653
No 47
>PRK01066 porphobilinogen deaminase; Provisional
Probab=62.53 E-value=7.9 Score=31.02 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=26.7
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCCC
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~~ 71 (122)
--+.|.+|+||+..|..+-.++++++ -|+|..+
T Consensus 132 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNV~TRL 166 (231)
T PRK01066 132 RPRIGSSSLRREELLKLLFPSGIILDIRGTIEERL 166 (231)
T ss_pred CCEEeCChHHHHHHHHHHCCCCEEEeCcCCHHHHH
Confidence 45789999999999999888777776 6676653
No 48
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=61.08 E-value=9.7 Score=31.07 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHHH
Q 033281 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (122)
Q Consensus 45 sSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA 85 (122)
+-..|.++|+++|++.-++- +|+|+ ....+|++++..+-
T Consensus 55 ~~~~k~~~l~~~Gvd~~~~~-~F~~~-~a~ls~e~Fi~~~l 93 (288)
T TIGR00083 55 PLEDKARQLQIKGVEQLLVV-VFDEE-FANLSALQFIDQLI 93 (288)
T ss_pred CHHHHHHHHHHcCCCEEEEe-CCCHH-HHcCCHHHHHHHHH
Confidence 44789999999999875554 37776 44678999987543
No 49
>PLN02691 porphobilinogen deaminase
Probab=60.12 E-value=9.6 Score=32.32 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=26.0
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe--CCCCCC
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~--sdiDE~ 70 (122)
--++|++|+||+..|+.+-.+.++++ -|+|..
T Consensus 164 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNVdTR 197 (351)
T PLN02691 164 GSVVGTASLRRQSQILHKYPHLKVVNFRGNVQTR 197 (351)
T ss_pred CCEeccCcHHHHHHHHHHCCCCEEEeccCCHHHH
Confidence 46899999999999999887777766 666654
No 50
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.17 E-value=6.4 Score=25.39 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHhcCCceEEEeCCCCCCC
Q 033281 50 KEILAEMGYEFTVVTAEIDEKS 71 (122)
Q Consensus 50 ~eLL~~lGi~FeVi~sdiDE~~ 71 (122)
...|.+.||+|..+|...||+.
T Consensus 16 A~~La~~GIRFVpiPv~~dee~ 37 (61)
T PF07131_consen 16 AHSLAHIGIRFVPIPVVTDEEF 37 (61)
T ss_pred HHHHHHcCceeeccccccHHHH
Confidence 3578999999999999988874
No 51
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.47 E-value=13 Score=24.66 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.1
Q ss_pred HHHHHhcCCceEEEeCCCCC
Q 033281 50 KEILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 50 ~eLL~~lGi~FeVi~sdiDE 69 (122)
.++|+..|++|+-+|+.+|=
T Consensus 22 L~I~E~~~is~Eh~PSGID~ 41 (76)
T cd04911 22 LSILEDNGISYEHMPSGIDD 41 (76)
T ss_pred HHHHHHcCCCEeeecCCCcc
Confidence 37999999999999999885
No 52
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=51.36 E-value=28 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.2
Q ss_pred CeEEEccCCHHHHHHHHhcCCceEEEeCC
Q 033281 38 IKIILGSSSMARKEILAEMGYEFTVVTAE 66 (122)
Q Consensus 38 ~~iILASsSPrR~eLL~~lGi~FeVi~sd 66 (122)
.++|....|+.|+++++++|....+-..+
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc
Confidence 47899999999999999999655554444
No 53
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=50.28 E-value=19 Score=26.63 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHH
Q 033281 43 GSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (122)
Q Consensus 43 ASsSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~ 83 (122)
=++-..|.++|+.+|+++.++. +|+++ ....+|++++..
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~-~F~~~-~~~ls~~~Fi~~ 99 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVI-PFTEE-FANLSPEDFIEK 99 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE--CCCH-HCCS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEe-cchHH-HHcCCHHHHHHH
Confidence 3566789999999999875443 67776 345789888874
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.04 E-value=62 Score=28.13 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=46.3
Q ss_pred hheeeeeeeeecCCccccccccccCCCCCCeEEEccCCHHHHHHHH-hcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 033281 9 FRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILA-EMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEA 87 (122)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iILASsSPrR~eLL~-~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~ 87 (122)
|+-.-|.-|+-+..||.-||+.+.. +-|-||.+.+|-+ ++++ +-||+...+.+.+++...+++.
T Consensus 151 ykdIRI~HTiiLdDPFddpp~l~~p--------~rspsPt~e~l~~g~i~~-------de~~d~~~g~saeel~e~~~e~ 215 (479)
T KOG0415|consen 151 YKDIRIKHTIILDDPFDDPPDLAEP--------MRSPSPTPEQLVKGRIRL-------DEDEDDDEGLSAEELEEVLAEK 215 (479)
T ss_pred ccceeeeeeEEecCCCCCchhhccC--------CCCCCCCHHHhhcccccc-------CcccccccccCHHHHHHHHHHH
Confidence 4455688899999999999999965 3588999877766 3554 3333434455677776666665
Q ss_pred HHHH
Q 033281 88 KAEA 91 (122)
Q Consensus 88 KA~a 91 (122)
-|.+
T Consensus 216 ea~~ 219 (479)
T KOG0415|consen 216 EAKA 219 (479)
T ss_pred HHHh
Confidence 4443
No 55
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=45.73 E-value=53 Score=21.21 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=21.2
Q ss_pred CeEEEccCCHHHHH---HHHhcCCceEEEeCCCC
Q 033281 38 IKIILGSSSMARKE---ILAEMGYEFTVVTAEID 68 (122)
Q Consensus 38 ~~iILASsSPrR~e---LL~~lGi~FeVi~sdiD 68 (122)
++++-...||+.+. +|+..|++|+.+..+++
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~ 52 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHEVININLK 52 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC
Confidence 35666666775443 55669999998877654
No 56
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=43.11 E-value=93 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCHHHHHHHHh---cCCce---EEE-eCCCCCCCCCCCCHHHHHH
Q 033281 45 SSMARKEILAE---MGYEF---TVV-TAEIDEKSIRKDKPEDLVM 82 (122)
Q Consensus 45 sSPrR~eLL~~---lGi~F---eVi-~sdiDE~~~~~~~p~d~v~ 82 (122)
+|-|++||.+. +|++- .++ .+++.+......+|...+.
T Consensus 82 G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~Dg~~~~Wd~~~v~~ 126 (247)
T KOG3332|consen 82 GKIREKELHRACAVLGIPLSNVVVLDTPFFQDGPGEDWDPDAVAS 126 (247)
T ss_pred chHHHHHHHHHHHHHCCchhheEEecCCcCCCCcccccCHHHHHH
Confidence 57899999987 78863 222 3666666556678876554
No 57
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=42.45 E-value=20 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHhcCCceEEEe
Q 033281 44 SSSMARKEILAEMGYEFTVVT 64 (122)
Q Consensus 44 SsSPrR~eLL~~lGi~FeVi~ 64 (122)
.++--|..+|+.+|+.+..+|
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIP 38 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEec
Confidence 667889999999996554444
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=41.11 E-value=1e+02 Score=22.57 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCCeEEEccCCHHH--------------HHHHHhcCCce-EEEeCC
Q 033281 36 SPIKIILGSSSMAR--------------KEILAEMGYEF-TVVTAE 66 (122)
Q Consensus 36 ~~~~iILASsSPrR--------------~eLL~~lGi~F-eVi~sd 66 (122)
+.+++.++|..+.. ..+|+.+|+++ .++.++
T Consensus 57 ~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~ 102 (166)
T TIGR01664 57 EGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH 102 (166)
T ss_pred CCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 45789999988763 57899999986 344444
No 59
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.57 E-value=57 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.6
Q ss_pred CCCCeEEEccCCHHHHHHHHhcCCceEEEe
Q 033281 35 SSPIKIILGSSSMARKEILAEMGYEFTVVT 64 (122)
Q Consensus 35 ~~~~~iILASsSPrR~eLL~~lGi~FeVi~ 64 (122)
++..+||.-..++...++|+++|++..+.|
T Consensus 87 ~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 87 NPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 444789999999999999999999877665
No 60
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=40.45 E-value=47 Score=20.25 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=21.3
Q ss_pred EEEccCCHHHHH---HHHhcCCceEEEeCCCCC
Q 033281 40 IILGSSSMARKE---ILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 40 iILASsSPrR~e---LL~~lGi~FeVi~sdiDE 69 (122)
..|.|-||.-+. .|+..|++|+.+..+.++
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~ 42 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW 42 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc
Confidence 456677887764 456689999998877543
No 61
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.72 E-value=17 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEccCCHH-HHHHHHh-cCCceEEEeCCCCCC
Q 033281 39 KIILGSSSMA-RKEILAE-MGYEFTVVTAEIDEK 70 (122)
Q Consensus 39 ~iILASsSPr-R~eLL~~-lGi~FeVi~sdiDE~ 70 (122)
-++|||-||+ |+++++. +-+.|++-.-..|+.
T Consensus 119 gVLlgSVSP~irkr~~~e~lclT~Eip~~~s~~s 152 (198)
T COG4073 119 GVLLGSVSPRIRKRIFKEDLCLTLEIPRRGSDRS 152 (198)
T ss_pred CeEEeecCHHHHHHhcccceEEEEEecCCCChhH
Confidence 4899999998 7777775 555666554444443
No 62
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=37.45 E-value=1.9e+02 Score=22.31 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=43.3
Q ss_pred CeEEEccCCHHHHHHH----HhcCCceEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 033281 38 IKIILGSSSMARKEIL----AEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRL 96 (122)
Q Consensus 38 ~~iILASsSPrR~eLL----~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~lA~~KA~av~~~l 96 (122)
++++.||+-|-..+=. +.+..++++++.++|=...+..--.+-+..-|...|...++..
T Consensus 2 ~~V~vgT~NpaKi~Av~~af~~~~~~~~v~~v~v~sgv~~QPfg~eeT~~GA~nRA~~A~~~~ 64 (175)
T COG1986 2 VKVAVGTTNPAKIRAVEEAFERLFGNVEVVGVAVDSGVPPQPFGDEETVQGARNRAKNALRAV 64 (175)
T ss_pred eEEEecCCChHHHHHHHHHHHHhcCceEEEEeccCCCCCCCCcChHHHHHHHHHHHHHHHhhc
Confidence 5788999988775443 4455589999988887766554434667788999998888864
No 63
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=35.31 E-value=18 Score=22.56 Aligned_cols=21 Identities=10% Similarity=0.195 Sum_probs=17.2
Q ss_pred ccCCHHHHHHHHhcCCceEEE
Q 033281 43 GSSSMARKEILAEMGYEFTVV 63 (122)
Q Consensus 43 ASsSPrR~eLL~~lGi~FeVi 63 (122)
+..-|+...+|+.+||+|=.-
T Consensus 9 v~~~p~~a~vf~~~gIDfCCg 29 (56)
T PF04405_consen 9 VAEDPRAARVFRKYGIDFCCG 29 (56)
T ss_pred HHHChHHHHHHHHcCCcccCC
Confidence 456799999999999998554
No 64
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=35.28 E-value=41 Score=20.73 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCceEEE
Q 033281 47 MARKEILAEMGYEFTVV 63 (122)
Q Consensus 47 PrR~eLL~~lGi~FeVi 63 (122)
.+=+++|+..|++|+.+
T Consensus 15 ~ka~~~L~~~gi~~~~~ 31 (73)
T cd03027 15 TAVRLFLREKGLPYVEI 31 (73)
T ss_pred HHHHHHHHHCCCceEEE
Confidence 34467899999999987
No 65
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=33.71 E-value=23 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHH--HHHHHHhhhcCCCCCCCEEEEcceEE
Q 033281 76 KPEDLVMALAEAKA--EAIRSRLQSAGQLNPTTLLITADTGL 115 (122)
Q Consensus 76 ~p~d~v~~lA~~KA--~av~~~l~~~~~~~~~~lVIgADTVV 115 (122)
+..+-|..++++|. +.|...+. +-++||||+.
T Consensus 29 s~~~~VE~L~~~~~~~~~i~~~L~--------D~~~GC~si~ 62 (86)
T PF15278_consen 29 SMISNVENLFRQKMQAQNIQSQLQ--------DCIAGCDSIF 62 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHH
Confidence 34567888999884 56666665 3478999874
No 66
>PRK08238 hypothetical protein; Validated
Probab=33.65 E-value=1.8e+02 Score=25.39 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCeEEEccCCHHH--HHHHHhcCCceE-EEeCCCCC
Q 033281 36 SPIKIILGSSSMAR--KEILAEMGYEFT-VVTAEIDE 69 (122)
Q Consensus 36 ~~~~iILASsSPrR--~eLL~~lGi~Fe-Vi~sdiDE 69 (122)
+..+++|+|+|+++ +.+++.+|+ |+ ++.+|-.+
T Consensus 87 ~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~~~ 122 (479)
T PRK08238 87 AGRKLVLATASDERLAQAVAAHLGL-FDGVFASDGTT 122 (479)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCCcc
Confidence 44689999999998 677889998 53 45555433
No 67
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=32.33 E-value=44 Score=21.17 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=20.0
Q ss_pred CeEEEccCC-----HHHHHHHHhcCCceEEEeC
Q 033281 38 IKIILGSSS-----MARKEILAEMGYEFTVVTA 65 (122)
Q Consensus 38 ~~iILASsS-----PrR~eLL~~lGi~FeVi~s 65 (122)
.+|+|=|.+ .+=+++|+..|++|+.+..
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEEC
Confidence 456665543 4557889999999998754
No 68
>PRK07143 hypothetical protein; Provisional
Probab=32.29 E-value=69 Score=26.06 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHH
Q 033281 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (122)
Q Consensus 45 sSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~l 84 (122)
+-..|.++|+++|+++.++ .+|+++ ....+|++++..+
T Consensus 66 ~~~er~~~l~~~Gvd~~~~-~~F~~~-~a~ls~e~Fi~~l 103 (279)
T PRK07143 66 DLNSRLQTLANLGFKNIIL-LDFNEE-LQNLSGNDFIEKL 103 (279)
T ss_pred CHHHHHHHHHHCCCCEEEE-eCCCHH-HhCCCHHHHHHHH
Confidence 4468999999999976444 457776 4567899988764
No 69
>PRK11590 hypothetical protein; Provisional
Probab=32.14 E-value=44 Score=25.07 Aligned_cols=33 Identities=6% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCeEEEccCCHHH--HHHHHhcCC--ceEEEeCCCCC
Q 033281 37 PIKIILGSSSMAR--KEILAEMGY--EFTVVTAEIDE 69 (122)
Q Consensus 37 ~~~iILASsSPrR--~eLL~~lGi--~FeVi~sdiDE 69 (122)
..+++++|+||+. +.+++.+|+ -..++.++++-
T Consensus 112 G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~ 148 (211)
T PRK11590 112 DADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQR 148 (211)
T ss_pred CCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEE
Confidence 4689999999998 678888885 34566666544
No 70
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=31.80 E-value=1.1e+02 Score=19.93 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=21.2
Q ss_pred CeEEEccCC-------H---HHHHHHHhcCCceEEEeC
Q 033281 38 IKIILGSSS-------M---ARKEILAEMGYEFTVVTA 65 (122)
Q Consensus 38 ~~iILASsS-------P---rR~eLL~~lGi~FeVi~s 65 (122)
.++++-|.| | +=+++|+..|++|+.+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv 45 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDI 45 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEc
Confidence 567777664 2 557799999999998854
No 71
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=31.14 E-value=69 Score=26.25 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=27.8
Q ss_pred CHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHH
Q 033281 46 SMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (122)
Q Consensus 46 SPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~ 83 (122)
=..|.++|+.+|+++-++ .+|+|+. ...+|++++..
T Consensus 72 ~eeR~~~l~~~gVD~~~~-~~F~~~~-~~ls~e~Fi~~ 107 (305)
T PRK05627 72 LRDKAELLAELGVDYVLV-LPFDEEF-AKLSAEEFIED 107 (305)
T ss_pred HHHHHHHHHHcCCCEEEE-ecCCHHH-hcCCHHHHHHH
Confidence 377999999999887766 6688763 45678888764
No 72
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=31.10 E-value=31 Score=20.44 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCceEEEeCCCCC
Q 033281 48 ARKEILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 48 rR~eLL~~lGi~FeVi~sdiDE 69 (122)
+=+++|+..|++|+.+..+-++
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDEDE 35 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGSH
T ss_pred HHHHHHHHcCCeeeEcccccch
Confidence 3468899999999888766554
No 73
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=30.33 E-value=57 Score=21.95 Aligned_cols=29 Identities=21% Similarity=0.238 Sum_probs=20.4
Q ss_pred CeEEEccCC-----HHHHHHHHhcCCceEEEeCC
Q 033281 38 IKIILGSSS-----MARKEILAEMGYEFTVVTAE 66 (122)
Q Consensus 38 ~~iILASsS-----PrR~eLL~~lGi~FeVi~sd 66 (122)
.+|++-|++ -+=+++|+++|++|+++..|
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 455555554 35577999999999876555
No 74
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=29.45 E-value=89 Score=18.78 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHhcCCceEEEeCCCCC
Q 033281 51 EILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 51 eLL~~lGi~FeVi~sdiDE 69 (122)
-+|+..|++|+.+..+..+
T Consensus 17 ~~l~~~gi~~e~~~i~~~~ 35 (74)
T cd03045 17 LTAKALGLELNLKEVNLMK 35 (74)
T ss_pred HHHHHcCCCCEEEEecCcc
Confidence 4677899999998777644
No 75
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=29.34 E-value=1.2e+02 Score=18.85 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=17.5
Q ss_pred eEEEccCCH--HHHH-HHHhcCCceEEEeC
Q 033281 39 KIILGSSSM--ARKE-ILAEMGYEFTVVTA 65 (122)
Q Consensus 39 ~iILASsSP--rR~e-LL~~lGi~FeVi~s 65 (122)
+|.=.+.|| +|.. .|+..|++|+++..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v 32 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELDVILYPC 32 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 344444565 5533 58889999998743
No 76
>PRK10824 glutaredoxin-4; Provisional
Probab=29.30 E-value=85 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred CeEEEccCC----------HHHHHHHHhcCCceEEEe
Q 033281 38 IKIILGSSS----------MARKEILAEMGYEFTVVT 64 (122)
Q Consensus 38 ~~iILASsS----------PrR~eLL~~lGi~FeVi~ 64 (122)
.+|++-|.| -+=+++|+.+|++|.++.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~id 51 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVD 51 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEE
Confidence 467777764 456789999999998773
No 77
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=29.21 E-value=76 Score=19.60 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=17.0
Q ss_pred ccCCHHHHH---HHHhcCCceEEEeCCC
Q 033281 43 GSSSMARKE---ILAEMGYEFTVVTAEI 67 (122)
Q Consensus 43 ASsSPrR~e---LL~~lGi~FeVi~sdi 67 (122)
.|-||.... +|+..|++|+....+.
T Consensus 14 ~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 14 PSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 366775543 4677899999876553
No 78
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=28.77 E-value=72 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhcCCceEEEeCCCCCCCCCCCCHHHHHHHH
Q 033281 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (122)
Q Consensus 45 sSPrR~eLL~~lGi~FeVi~sdiDE~~~~~~~p~d~v~~l 84 (122)
+-..|.++|+++|++.-+ ..+++|+. ...+|+++...+
T Consensus 57 ~~e~R~~~l~~l~vd~v~-~~~f~~~~-~~~s~~~Fi~~i 94 (180)
T cd02064 57 TLEEKLELLESLGVDYLL-VLPFDKEF-ASLSAEEFVEDL 94 (180)
T ss_pred CHHHHHHHHHHcCCCEEE-EeCCCHHH-HcCCHHHHHHHH
Confidence 447899999999976543 34677763 446788877654
No 79
>PRK10329 glutaredoxin-like protein; Provisional
Probab=28.12 E-value=67 Score=20.82 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCceEEEeCC
Q 033281 48 ARKEILAEMGYEFTVVTAE 66 (122)
Q Consensus 48 rR~eLL~~lGi~FeVi~sd 66 (122)
+=+++|+..||+|+.+..+
T Consensus 16 ~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 16 ATKRAMESRGFDFEMINVD 34 (81)
T ss_pred HHHHHHHHCCCceEEEECC
Confidence 4468899999999988443
No 80
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=27.94 E-value=92 Score=19.40 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=16.3
Q ss_pred CHHHHH-HHHhcCCceEEEeCCCC
Q 033281 46 SMARKE-ILAEMGYEFTVVTAEID 68 (122)
Q Consensus 46 SPrR~e-LL~~lGi~FeVi~sdiD 68 (122)
+.+|.. +|+..|++|+.+..+..
T Consensus 11 ~s~rv~~~L~e~gl~~e~~~v~~~ 34 (73)
T cd03052 11 SSQKVRLVIAEKGLRCEEYDVSLP 34 (73)
T ss_pred cHHHHHHHHHHcCCCCEEEEecCC
Confidence 345644 47779999999877654
No 81
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=27.54 E-value=87 Score=18.53 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=17.2
Q ss_pred CHHH-HHHHHhcCCceEEEeCCCCC
Q 033281 46 SMAR-KEILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 46 SPrR-~eLL~~lGi~FeVi~sdiDE 69 (122)
..+| +-+|+..|++|+.+..++.+
T Consensus 11 ~~~~~~~~L~~~~l~~~~~~v~~~~ 35 (74)
T cd03051 11 NPRRVRIFLAEKGIDVPLVTVDLAA 35 (74)
T ss_pred chHHHHHHHHHcCCCceEEEeeccc
Confidence 3444 45577799999998877654
No 82
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=27.22 E-value=2.4e+02 Score=20.33 Aligned_cols=23 Identities=0% Similarity=0.133 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCceEEEeCCCCC
Q 033281 47 MARKEILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 47 PrR~eLL~~lGi~FeVi~sdiDE 69 (122)
..-+++.+.+|+++.++..+..+
T Consensus 48 ~~~~~~~~~~gi~~~~~~~~~~~ 70 (189)
T TIGR02432 48 EFVQQFCKKLNIPLEIKKVDVKA 70 (189)
T ss_pred HHHHHHHHHcCCCEEEEEecchh
Confidence 34567888899999988877655
No 83
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=26.89 E-value=75 Score=19.42 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCceEEEeCC
Q 033281 48 ARKEILAEMGYEFTVVTAE 66 (122)
Q Consensus 48 rR~eLL~~lGi~FeVi~sd 66 (122)
+=+++|+..|++|+.+..+
T Consensus 16 ~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 16 RAKAALQENGISYEEIPLG 34 (72)
T ss_pred HHHHHHHHcCCCcEEEECC
Confidence 4478999999999877543
No 84
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 2ZJR_D 2ZJP_D 3PIO_D 3CF5_D 2ZJQ_D 3DLL_D 3PIP_D 2WDL_G 3UZN_G ....
Probab=26.08 E-value=39 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.8
Q ss_pred ccccccccccCCCCCCeEEEccCCHHHHH-HHHhcCCce
Q 033281 23 EFERKRGMARSESSPIKIILGSSSMARKE-ILAEMGYEF 60 (122)
Q Consensus 23 ~~~~~~~~~~~~~~~~~iILASsSPrR~e-LL~~lGi~F 60 (122)
+|+...||.- .|+--+.++.+.. ||+.+|++|
T Consensus 62 ~~~~i~G~~i------~i~t~ak~~~~~~~ll~~~~ipf 94 (95)
T PF00673_consen 62 PFPGIFGMDI------TIVTTAKTPKEARLLLKSFGIPF 94 (95)
T ss_dssp SSSSSSCEEE------EEEESCSSHHHHHHHHHHHHHHB
T ss_pred CCCCccceEE------EEEEecCCcHHHHHHHHHhCCcc
Confidence 4456666764 5888899999988 888898876
No 85
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=26.06 E-value=87 Score=24.13 Aligned_cols=32 Identities=16% Similarity=-0.009 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcceEEEeccee
Q 033281 81 VMALAEAKAEAIRSRLQSAGQLNPTTLLITADTGLFEVISY 121 (122)
Q Consensus 81 v~~lA~~KA~av~~~l~~~~~~~~~~lVIgADTVVv~d~~~ 121 (122)
-+..|+.|.-..+..+.. ..|++++||+|--|
T Consensus 28 ~LE~AR~~LIe~l~~Y~s---------~~g~~iivVFDA~~ 59 (173)
T COG3688 28 GLEAARDKLIEALAEYQS---------FTGYKIIVVFDAHY 59 (173)
T ss_pred cHHHHHHHHHHHHHHhhc---------ccCceEEEEEEccc
Confidence 566788887777766543 78899999999754
No 86
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.78 E-value=28 Score=26.04 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.4
Q ss_pred eEEEccCCHHHHHHHHhcC
Q 033281 39 KIILGSSSMARKEILAEMG 57 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lG 57 (122)
+=+|-+.|..|+++|+++|
T Consensus 126 r~~l~~~~~eR~~~L~~iG 144 (145)
T cd02410 126 RRFLRREREERKEILKRIG 144 (145)
T ss_pred HHHHHHhHHHHHHHHHHhc
Confidence 3467889999999999998
No 87
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=24.56 E-value=1.7e+02 Score=17.74 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=17.5
Q ss_pred cCCHHHHH-HHHhcCCceEEEeCCCCC
Q 033281 44 SSSMARKE-ILAEMGYEFTVVTAEIDE 69 (122)
Q Consensus 44 SsSPrR~e-LL~~lGi~FeVi~sdiDE 69 (122)
|.+.||.. .|+..|++|+.+..+..+
T Consensus 9 s~~~~~v~~~l~~~g~~~~~~~v~~~~ 35 (76)
T cd03050 9 SQPSRAVYIFLKLNKIPFEECPIDLRK 35 (76)
T ss_pred ChhHHHHHHHHHHcCCCcEEEEecCCC
Confidence 34444443 377799999998877654
No 88
>PRK15113 glutathione S-transferase; Provisional
Probab=24.21 E-value=1.5e+02 Score=21.97 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHH-HHhcCCceEEEeCCCC
Q 033281 47 MARKEI-LAEMGYEFTVVTAEID 68 (122)
Q Consensus 47 PrR~eL-L~~lGi~FeVi~sdiD 68 (122)
.+|..+ |+..|++|+.+..++.
T Consensus 19 ~~rv~~~l~e~gi~~e~~~v~~~ 41 (214)
T PRK15113 19 VMSAFVALQEKGLPFELKTVDLD 41 (214)
T ss_pred HHHHHHHHHHcCCCCeEEEeCCC
Confidence 356455 6779999999887764
No 89
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=23.51 E-value=2.8e+02 Score=20.02 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=19.9
Q ss_pred CCeEEEccCCHHH--HHHHHhcCCc--eEEE
Q 033281 37 PIKIILGSSSMAR--KEILAEMGYE--FTVV 63 (122)
Q Consensus 37 ~~~iILASsSPrR--~eLL~~lGi~--FeVi 63 (122)
..++.++|++++. +.+|+.+|+. |..+
T Consensus 101 g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~ 131 (213)
T TIGR01449 101 GLRLGLVTNKPTPLARPLLELLGLAKYFSVL 131 (213)
T ss_pred CCeEEEEeCCCHHHHHHHHHHcCcHhhCcEE
Confidence 4689999998765 6678889984 5544
No 90
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=23.29 E-value=1.3e+02 Score=18.22 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=16.0
Q ss_pred cCCHHHHHH-HHhcCCceEEEeCCC
Q 033281 44 SSSMARKEI-LAEMGYEFTVVTAEI 67 (122)
Q Consensus 44 SsSPrR~eL-L~~lGi~FeVi~sdi 67 (122)
|...+|..+ |+..|++|+....+.
T Consensus 9 s~~~~~v~~~L~~~~l~~~~~~~~~ 33 (73)
T cd03047 9 SINVQKVLWLLDELGLPYERIDAGG 33 (73)
T ss_pred CcchHHHHHHHHHcCCCCEEEEecc
Confidence 334445444 677999999887654
No 91
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=23.26 E-value=1.7e+02 Score=17.30 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=17.9
Q ss_pred EEEccCCHHH---HHHHHhcCCceEEEeCCC
Q 033281 40 IILGSSSMAR---KEILAEMGYEFTVVTAEI 67 (122)
Q Consensus 40 iILASsSPrR---~eLL~~lGi~FeVi~sdi 67 (122)
+.-...||+- +-+|+..|++|+.+..+.
T Consensus 3 ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~ 33 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLAEKGVSVEIIDVDP 33 (73)
T ss_pred EEECCCChhHHHHHHHHHHcCCccEEEEcCC
Confidence 4434455533 345777999999887654
No 92
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=22.85 E-value=1.7e+02 Score=19.44 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=20.7
Q ss_pred CeEEEccC-------CH---HHHHHHHhcCCceEEEe
Q 033281 38 IKIILGSS-------SM---ARKEILAEMGYEFTVVT 64 (122)
Q Consensus 38 ~~iILASs-------SP---rR~eLL~~lGi~FeVi~ 64 (122)
.+|++-|. -| +=+++|+.+|++|+.+.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~d 48 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVN 48 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEE
Confidence 46777765 34 67899999999998763
No 93
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=22.41 E-value=2.4e+02 Score=20.49 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=12.8
Q ss_pred HHHHHhcCCceEEEeCCC
Q 033281 50 KEILAEMGYEFTVVTAEI 67 (122)
Q Consensus 50 ~eLL~~lGi~FeVi~sdi 67 (122)
+++.+++||++.+...+.
T Consensus 51 ~~~~~~~~i~~~~~~~~~ 68 (182)
T PF01171_consen 51 EEICEQLGIPLYIVRIDE 68 (182)
T ss_dssp HHHHHHTT-EEEEEE--C
T ss_pred HHHHHhcCCceEEEEeee
Confidence 567888999999998887
No 94
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.30 E-value=53 Score=19.34 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=8.4
Q ss_pred CHHHHHHHHhc
Q 033281 46 SMARKEILAEM 56 (122)
Q Consensus 46 SPrR~eLL~~l 56 (122)
..||++||+.-
T Consensus 16 ~~RRk~IL~k~ 26 (39)
T PF08557_consen 16 ASRRKEILKKH 26 (39)
T ss_pred HHHHHHHHHhC
Confidence 36899999863
No 95
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=22.19 E-value=1.3e+02 Score=23.90 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.7
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEe
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVT 64 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~ 64 (122)
++|....|+.|.++++++|.++.+..
T Consensus 196 ~Vi~~~~~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 196 EIVCADVSPRSLSLAREMGADKLVNP 221 (343)
T ss_pred EEEEEeCCHHHHHHHHHcCCcEEecC
Confidence 68888899999999999998765543
No 96
>PLN02473 glutathione S-transferase
Probab=22.01 E-value=1.1e+02 Score=22.54 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=17.6
Q ss_pred cCCHHHHHH-HHhcCCceEEEeCCCC
Q 033281 44 SSSMARKEI-LAEMGYEFTVVTAEID 68 (122)
Q Consensus 44 SsSPrR~eL-L~~lGi~FeVi~sdiD 68 (122)
|..++|..+ |+.+|++|+++..+..
T Consensus 11 s~~~~rv~~~L~e~gi~ye~~~v~~~ 36 (214)
T PLN02473 11 AANPQRVLLCFLEKGIEFEVIHVDLD 36 (214)
T ss_pred CCchHHHHHHHHHcCCCceEEEecCc
Confidence 344566555 6779999998876654
No 97
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=21.54 E-value=1.4e+02 Score=21.69 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred CCeEEEccCCHHH--HHHHHhcCCc
Q 033281 37 PIKIILGSSSMAR--KEILAEMGYE 59 (122)
Q Consensus 37 ~~~iILASsSPrR--~eLL~~lGi~ 59 (122)
..++.++|++++. ..+|+.+|+.
T Consensus 122 g~~~~i~T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 122 PKGMAVVTGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred CCcEEEECCCCHHHHHHHHHHcCch
Confidence 4689999999887 6788999985
No 98
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=21.16 E-value=1.2e+02 Score=16.97 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=15.5
Q ss_pred HHHHHhcCCceEEEeCCCCCC
Q 033281 50 KEILAEMGYEFTVVTAEIDEK 70 (122)
Q Consensus 50 ~eLL~~lGi~FeVi~sdiDE~ 70 (122)
+.+|+..|++|+.+..+.++.
T Consensus 16 ~~~l~~~~i~~~~~~~~~~~~ 36 (71)
T cd00570 16 RLALEEKGLPYELVPVDLGEG 36 (71)
T ss_pred HHHHHHcCCCcEEEEeCCCCC
Confidence 456778999999887665444
No 99
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.11 E-value=1.2e+02 Score=18.60 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCceEEEeC
Q 033281 48 ARKEILAEMGYEFTVVTA 65 (122)
Q Consensus 48 rR~eLL~~lGi~FeVi~s 65 (122)
+=+++|++.|++|+.+..
T Consensus 14 ~ak~~L~~~~i~~~~~di 31 (72)
T TIGR02194 14 MTKKALEEHGIAFEEINI 31 (72)
T ss_pred HHHHHHHHCCCceEEEEC
Confidence 346789999999988743
No 100
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=21.08 E-value=82 Score=20.86 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHhcCCceEEEeCCCCCCC
Q 033281 50 KEILAEMGYEFTVVTAEIDEKS 71 (122)
Q Consensus 50 ~eLL~~lGi~FeVi~sdiDE~~ 71 (122)
+++|+..||+.++...++.|-.
T Consensus 8 k~~L~e~Gi~~~ve~~diss~~ 29 (85)
T PRK10222 8 DQFLTQSNIDHTVNSCAVGEYK 29 (85)
T ss_pred HHHHHHcCCCeEEEEeehhhcc
Confidence 5789999999998888886653
No 101
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.98 E-value=1.1e+02 Score=23.16 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=21.4
Q ss_pred EEEccCCHHH-----HHHHHhcCCceEEEeCC
Q 033281 40 IILGSSSMAR-----KEILAEMGYEFTVVTAE 66 (122)
Q Consensus 40 iILASsSPrR-----~eLL~~lGi~FeVi~sd 66 (122)
||.||.|-.- .++|+.+|++|++....
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~S 34 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVS 34 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 7888888765 47899999999877654
No 102
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=20.91 E-value=97 Score=24.69 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=16.9
Q ss_pred EEEccCCHHHHHHHHhcCCceEEEeCCCCCC
Q 033281 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEK 70 (122)
Q Consensus 40 iILASsSPrR~eLL~~lGi~FeVi~sdiDE~ 70 (122)
++--|-|++.+++|+..|++|..+.+..|..
T Consensus 187 lvA~~i~~~a~~ll~~~glef~~ldp~~~~~ 217 (228)
T PF01939_consen 187 LVAPSITPQARELLEDRGLEFVELDPPYDAM 217 (228)
T ss_dssp EEES-B-HHHHHHHHHHT-EEEE--------
T ss_pred EECCCCCHHHHHHHHHcCCEEEEecchHHHh
Confidence 4444668999999999999999888777763
No 103
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.91 E-value=2.6e+02 Score=19.62 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=21.5
Q ss_pred CCCeEEEccCCHHHHHHHHhcCCc--eEEE
Q 033281 36 SPIKIILGSSSMARKEILAEMGYE--FTVV 63 (122)
Q Consensus 36 ~~~~iILASsSPrR~eLL~~lGi~--FeVi 63 (122)
+..++.++|.++.-..+|+.+|+. |..+
T Consensus 102 ~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~ 131 (185)
T TIGR01990 102 NNIKIALASASKNAPTVLEKLGLIDYFDAI 131 (185)
T ss_pred CCCeEEEEeCCccHHHHHHhcCcHhhCcEE
Confidence 346899999887777899999985 6543
No 104
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=20.69 E-value=1.3e+02 Score=22.90 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=20.6
Q ss_pred CeEEEccCCHH--HHHHHHhcCCc--eEEEe
Q 033281 38 IKIILGSSSMA--RKEILAEMGYE--FTVVT 64 (122)
Q Consensus 38 ~~iILASsSPr--R~eLL~~lGi~--FeVi~ 64 (122)
..+.++|+|+| -..+|+.+|+. |+.+.
T Consensus 103 i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v 133 (221)
T COG0637 103 IPLAVASSSPRRAAERVLARLGLLDYFDVIV 133 (221)
T ss_pred CcEEEecCChHHHHHHHHHHccChhhcchhc
Confidence 68999999995 55688889984 66544
No 105
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=20.51 E-value=4.4e+02 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=22.8
Q ss_pred eEEEccCCHHHHHHHHhcCCceEEEeC
Q 033281 39 KIILGSSSMARKEILAEMGYEFTVVTA 65 (122)
Q Consensus 39 ~iILASsSPrR~eLL~~lGi~FeVi~s 65 (122)
.++.-..+|.|+++.+.+|.+|..+.+
T Consensus 190 ~V~a~D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 190 IVRAFDTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred EEEEEeCCHHHHHHHHHcCCeEEEecc
Confidence 577788999999999999999876544
Done!