BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033283
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/120 (83%), Positives = 109/120 (90%), Gaps = 3/120 (2%)
Query: 1 MAAEAPASPGG-GSHESG-EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKE 57
MA SPGG GSHESG +QSPRS +VREQDR+LPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60
Query: 58 TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK+YL RYRE+
Sbjct: 61 IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/101 (89%), Positives = 97/101 (96%), Gaps = 1/101 (0%)
Query: 18 EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76
+QSPRS NVREQDR+LPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASD
Sbjct: 19 DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78
Query: 77 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
KCQREKRKTINGDDLLWAMATLGFEDYIDPLK+YL RYRE+
Sbjct: 79 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREM 119
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 101/115 (87%), Gaps = 5/115 (4%)
Query: 3 AEAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62
A+ P+SP G ESG +VREQDRYLPIANISRIMKKALP NGKI KDAK+TVQEC
Sbjct: 2 ADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQEC 56
Query: 63 VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
VSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLKIYL RYRE+
Sbjct: 57 VSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREL 111
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 92/93 (98%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
TINGDDLLWAMATLGFEDYI+PLK+YL +YRE+
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 121
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 92/93 (98%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
TINGDDLLWAMATLGFEDYI+PLK+YL +YRE+
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 128
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 96/107 (89%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT 71
G ESG VREQDR+LPIANISRIMKKA+PANGKIAKDAKET+QECVSEFISF+T
Sbjct: 19 GHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVT 78
Query: 72 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
SEASDKCQ+EKRKTING+DLL+AM TLGFE+Y+DPLKIYL +YREVI
Sbjct: 79 SEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVI 125
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 94/106 (88%), Gaps = 3/106 (2%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT 71
G H+ G ++ REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVSEFISFIT
Sbjct: 9 GGHKDG---GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 65
Query: 72 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
EASDKCQREKRKTINGDDLLWAM TLGFEDY++PLK+YL +YREV
Sbjct: 66 GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREV 111
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 77/92 (83%), Positives = 88/92 (95%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
REQDR+LPIAN+SRIMKKALPAN KI+KDAKET+QECVSEFISF+T EASDKCQ+EKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
INGDDLLWAM TLGFEDY++PLK+YL R+RE+
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREI 117
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/126 (64%), Positives = 95/126 (75%), Gaps = 9/126 (7%)
Query: 1 MAAEAPASPGG--GSHESGEQSPRSNV-------REQDRYLPIANISRIMKKALPANGKI 51
M E+P G G E+ SP S +EQDR+LPIAN+ RIMKK LP NGKI
Sbjct: 1 MTEESPEEDHGSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKI 60
Query: 52 AKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111
+KDAKETVQECVSEFISF+T EASDKCQREKRKTINGDD++WA+ TLGFEDY+ PLK+YL
Sbjct: 61 SKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYL 120
Query: 112 TRYREV 117
+YR+
Sbjct: 121 CKYRDT 126
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 85/92 (92%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
+EQDR+LPIANI RIM++A+P NGKIAKD+KE+VQECVSEFISFITSEASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
INGDDL+W+M TLGFEDY++PLK+YL YRE
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRET 112
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 157 bits (396), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/91 (80%), Positives = 85/91 (93%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
REQDRYLPIANI RIMKKALP N K+AKDAKETVQ+CVSEFISFITSEASDKCQ+EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
ING+D++ AM +LGFE+Y++PLK+YL +YRE
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRE 137
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 101 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 145
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 101 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 145
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 101 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 145
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 101 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 145
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 42 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 100
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 101 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 145
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 1/105 (0%)
Query: 14 HESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSE 73
HE S S REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSE
Sbjct: 40 HEDTNGSKES-FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSE 98
Query: 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 99 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 143
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 93/116 (80%), Gaps = 5/116 (4%)
Query: 3 AEAPASPGGGSHES--GEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQ 60
+A S G H+ G + P REQD YLPIAN++RIMK ++P++GKIAKDAKE VQ
Sbjct: 32 GDAEGSLASGDHDESCGSKDP---YREQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQ 88
Query: 61 ECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
ECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE
Sbjct: 89 ECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRE 144
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 80/101 (79%)
Query: 15 ESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEA 74
E +Q V+EQDR LPIAN+ RIMK LPAN K++K+AKET+QECVSEFISF+T EA
Sbjct: 39 EDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEA 98
Query: 75 SDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
SDKC +EKRKT+NGDD+ WAMA LGF+DY LK YL RYR
Sbjct: 99 SDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYR 139
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 89/111 (80%), Gaps = 3/111 (2%)
Query: 10 GGGSHESG---EQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66
G G +G +Q P REQD+Y+PIAN+ RIM+K LP++ KI+ DAKET+QECVSE+
Sbjct: 39 GAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEY 98
Query: 67 ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
ISF+T EA+++CQRE+RKTI +D+LWAM+ LGF++Y+DPL +++ RYRE+
Sbjct: 99 ISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREI 149
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 83/93 (89%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR++PIAN+ RIM++ LPA+ KI+ D+KET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREV 117
TI +D+LWAM+ LGF+DYI+PL +YL RYRE+
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYREL 148
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 83/107 (77%)
Query: 10 GGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISF 69
GG + SG S +REQDR+LPI N++R+MK LP + K++KDAKE +QECVSE ISF
Sbjct: 20 GGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISF 79
Query: 70 ITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
+TSEASD+C +KRKTING+D+L ++ LGFE+Y + LKIYL +YR+
Sbjct: 80 VTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQ 126
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 131 bits (330), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 75/90 (83%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 86
++DR LPIAN+ R+MK+ LP+N KI+K+AK+TVQEC +EFISF+T EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 87 NGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
NGDD+ WA++TLG ++Y D + +L +YRE
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYRE 92
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 74/90 (82%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 86
EQDR+LPI N++R+MK LPA K++KDAKE +QECVSEFISF+TSEA D+C KRKTI
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 87 NGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
NG+D+L ++ LGFE+Y + LKIYL +YR+
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYRQ 111
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 73/85 (85%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIAN++RIMK ALP N KI+K+AK+ VQ+CVSEFISF+T EAS++C +EKRKTI G+D+
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 92 LWAMATLGFEDYIDPLKIYLTRYRE 116
L A+ TLGFE+Y + LKI LT+YRE
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYRE 96
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 56/60 (93%)
Query: 59 VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVI 118
VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE +
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+AN+ R++KK LP KI AK +C EF+ F+ EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 92 LWAMATLGFEDYIDPLKIYLTRYRE 116
L + LGF+ Y+DP+ Y+ YRE
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYRE 118
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 56/78 (71%)
Query: 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 87
+D LP A +++I+K+ LP + ++A+DA++ + EC EFI+ ++SE++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 88 GDDLLWAMATLGFEDYID 105
+ +L A+ LGF +YI+
Sbjct: 72 PEHVLKALQVLGFGEYIE 89
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 83
N +E + LP A +S+++K+ LP + K + + ++ + EC EFI I+SEA+D C RE++
Sbjct: 5 NDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQK 64
Query: 84 KTINGDDLLWAMATLGFEDY 103
+TI + ++ A+ LGF DY
Sbjct: 65 RTIAAEHVIKALTELGFSDY 84
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ +I PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRYREV 117
+ ++ A+ +LGF YI +K L + V
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTV 97
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRYREV 117
+ ++ A+ +LGF YI +K L + V
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTV 97
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRYREV 117
+ ++ A+ +LGF YI +K L + V
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTV 97
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRYREV 117
+ ++ A+ +LGF YI +K L + V
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTV 97
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A+I++I+K+ +P ++A +++E + C SEFI I+SEA++ C +KTIN + +
Sbjct: 20 LPRASINKIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHV 78
Query: 92 LWAMATLGFEDYIDPLKIYLTRYREV 117
L A+ LGF DY + L +EV
Sbjct: 79 LEALERLGFHDYKQEAEAVLHDCKEV 104
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A + +++ LP + K+A++ + EC EFI ++SEA++ C++E +KTI + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 92 LWAMATLGFEDYI 104
+ A+ L F++YI
Sbjct: 72 IKALENLEFKEYI 84
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A ++RI+K +LP AK+++ + + +I ++T+ + D R TI+ D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 92 LWAMATLGFEDYIDPLKIYLTRYR 115
A+ + FE++ L+ YL +
Sbjct: 67 FQAIEEIDFENFKPQLEEYLAALK 90
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A + +++ + L + KDA+E + EFI ++S AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 92 LWAMATLGFEDYIDPLKIYLTRYR 115
+ A+ L + ++I L+ L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D LP + I R++K LP + K+A + + + F+SF+TS + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRY 114
D+L A+ + + ++ LK +L Y
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D P + I + K+ LP + I+KDA +Q + F+S++ S + + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 89 DDLLWAMATLGFEDYI 104
D+ A+ + ++
Sbjct: 94 QDVFVALKDVDLAQFV 109
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 9 PGGGSHESGEQSPRSNVREQDR------YLPIANISRIMKKALPA-------NGKIAKDA 55
P G + Q P+ N ++QD P A + ++ K + A N +AKD+
Sbjct: 3 PKGWRKNTEGQYPQPN-KDQDLVSIDEILFPRATVQKLAKNIMNASSDEGASNMILAKDS 61
Query: 56 KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+Q + F+S + +A + E RKTIN D+L A+ F +I +K L+ +
Sbjct: 62 MIALQRSSTVFVSHLMFQARQISKDEGRKTINAQDILSALEKAEFSGFIPEVKQKLSVFE 121
Query: 116 EVICV 120
I +
Sbjct: 122 SNIAL 126
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A RI+KKA ++++ A E + E V E I EA + + KRKT+ +D+
Sbjct: 4 LPVAPFERILKKA--GAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 92 LWAM 95
A+
Sbjct: 62 KLAL 65
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A RI+KKA ++++ A E + E V E I EA + + KRKT+ +D+
Sbjct: 4 LPVAPFERILKKA--GAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVEDI 61
Query: 92 LWAM 95
A+
Sbjct: 62 KLAL 65
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A + R+++KA ++++DAK + + + E+ I +A++ + RKT+ DD+
Sbjct: 8 LPLAPVERLLRKA--GASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 92 LWAMATL 98
A+ L
Sbjct: 66 KLALREL 72
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA + R+++KA ++++DA + + E + E+ ++ +A D + RKT+ +D+
Sbjct: 4 LPIAPVDRLIRKA--GAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 92 LWAM 95
A+
Sbjct: 62 KLAI 65
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ T+ + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 92 LWAM 95
A+
Sbjct: 61 ELAV 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,232,299
Number of Sequences: 539616
Number of extensions: 1579118
Number of successful extensions: 4305
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 4236
Number of HSP's gapped (non-prelim): 89
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)