Query 033283
Match_columns 122
No_of_seqs 119 out of 610
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 1.1E-31 3.6E-36 203.4 11.5 98 21-119 5-102 (179)
2 1n1j_A NF-YB; histone-like PAI 100.0 6E-31 2.1E-35 179.8 10.7 92 25-116 2-93 (93)
3 2byk_B Chrac-14; nucleosome sl 100.0 1.9E-30 6.5E-35 187.3 10.9 95 26-120 4-98 (128)
4 3b0c_W CENP-W, centromere prot 99.9 5.8E-23 2E-27 135.8 7.5 68 30-98 3-70 (76)
5 1f1e_A Histone fold protein; a 99.8 2.4E-21 8.4E-26 143.6 7.5 75 30-105 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 2.6E-20 8.7E-25 120.1 7.3 66 31-98 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 1.6E-19 5.5E-24 127.3 8.1 90 27-118 3-94 (111)
8 2byk_A Chrac-16; nucleosome sl 99.8 4.4E-20 1.5E-24 134.9 3.0 96 23-119 11-110 (140)
9 1n1j_B NF-YC; histone-like PAI 99.7 7.9E-18 2.7E-22 115.7 7.2 79 26-105 14-92 (97)
10 1f1e_A Histone fold protein; a 99.7 1.4E-17 4.8E-22 123.4 8.7 74 22-97 73-146 (154)
11 4g92_C HAPE; transcription fac 99.7 1.4E-17 4.8E-22 118.4 8.1 77 27-104 37-113 (119)
12 1id3_B Histone H4; nucleosome 99.7 1.1E-16 3.6E-21 111.3 8.0 79 23-103 20-98 (102)
13 2hue_C Histone H4; mini beta s 99.7 2E-16 7E-21 106.1 6.6 76 26-103 5-80 (84)
14 1ku5_A HPHA, archaeal histon; 99.6 7.3E-16 2.5E-20 99.9 7.3 64 31-96 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 1.4E-15 4.9E-20 105.5 8.2 78 24-103 22-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 2.2E-15 7.4E-20 104.6 7.1 77 25-103 23-99 (103)
17 1jfi_A Transcription regulator 99.5 1.2E-14 4.3E-19 100.0 5.2 77 28-105 8-84 (98)
18 2hue_B Histone H3; mini beta s 99.3 5.1E-12 1.8E-16 83.9 7.3 71 29-99 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.2 1.9E-11 6.4E-16 84.8 6.6 72 25-96 21-98 (100)
20 3nqj_A Histone H3-like centrom 99.2 3.4E-11 1.1E-15 80.8 6.8 70 30-99 2-76 (82)
21 3nqu_A Histone H3-like centrom 99.2 3.7E-11 1.3E-15 87.6 6.1 75 26-100 56-135 (140)
22 3r45_A Histone H3-like centrom 99.1 6.3E-11 2.2E-15 87.7 6.6 72 26-97 72-148 (156)
23 1tzy_C Histone H3; histone-fol 99.1 1.1E-10 3.9E-15 84.7 6.8 74 26-99 57-133 (136)
24 1taf_B TFIID TBP associated fa 99.0 1.8E-09 6.1E-14 70.4 8.0 65 30-96 5-69 (70)
25 4dra_A Centromere protein S; D 99.0 1E-09 3.5E-14 77.5 7.3 77 36-118 32-109 (113)
26 3v9r_A MHF1, uncharacterized p 98.9 4.4E-09 1.5E-13 71.5 7.0 62 36-97 17-79 (90)
27 3b0b_B CENP-S, centromere prot 98.9 4.1E-09 1.4E-13 73.7 6.8 63 36-98 24-87 (107)
28 3vh5_A CENP-S; histone fold, c 98.8 7.7E-09 2.6E-13 75.4 7.3 75 36-116 24-99 (140)
29 1id3_C Histone H2A.1; nucleoso 98.7 6.9E-08 2.4E-12 69.5 7.8 70 27-97 21-90 (131)
30 1f66_C Histone H2A.Z; nucleoso 98.7 7E-08 2.4E-12 69.2 7.7 70 28-97 24-93 (128)
31 2nqb_C Histone H2A; nucleosome 98.7 7.1E-08 2.4E-12 68.7 7.6 69 28-97 20-88 (123)
32 1tzy_A Histone H2A-IV; histone 98.6 9.2E-08 3.2E-12 68.7 7.7 68 28-96 22-89 (129)
33 1taf_A TFIID TBP associated fa 98.6 1.6E-07 5.3E-12 60.8 7.8 61 35-97 5-65 (68)
34 2f8n_G Core histone macro-H2A. 98.6 1.2E-07 4.1E-12 67.3 7.6 69 28-97 19-87 (120)
35 2f8n_K Histone H2A type 1; nuc 98.6 1.9E-07 6.5E-12 68.6 7.6 69 28-97 41-109 (149)
36 2ly8_A Budding yeast chaperone 98.6 1.2E-07 4.2E-12 67.5 6.3 72 32-103 2-117 (121)
37 2jss_A Chimera of histone H2B. 98.5 4.8E-07 1.6E-11 68.5 7.7 70 28-97 102-171 (192)
38 2l5a_A Histone H3-like centrom 98.4 3.7E-07 1.3E-11 71.4 6.4 72 28-99 8-85 (235)
39 2nqb_D Histone H2B; nucleosome 98.3 1.4E-06 4.9E-11 62.1 7.1 63 35-98 37-99 (123)
40 1tzy_B Histone H2B; histone-fo 98.3 1.9E-06 6.4E-11 61.7 7.1 63 35-98 40-102 (126)
41 2l5a_A Histone H3-like centrom 98.2 7.2E-07 2.5E-11 69.7 4.3 59 39-99 169-227 (235)
42 4dra_E Centromere protein X; D 98.2 8.3E-06 2.8E-10 54.7 8.4 69 29-97 10-79 (84)
43 3b0b_C CENP-X, centromere prot 98.2 8.4E-06 2.9E-10 54.3 7.9 72 26-97 3-75 (81)
44 2jss_A Chimera of histone H2B. 98.1 1.5E-05 5E-10 60.2 8.0 62 35-97 7-68 (192)
45 1h3o_B Transcription initiatio 97.9 5.9E-05 2E-09 49.6 8.2 66 31-97 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.7 0.00018 6E-09 48.5 7.9 67 31-99 16-83 (89)
47 3v9r_B MHF2, uncharacterized p 97.2 0.00064 2.2E-08 45.8 5.7 49 32-80 2-51 (88)
48 2ly8_A Budding yeast chaperone 97.2 0.00045 1.5E-08 49.0 4.9 17 50-66 64-80 (121)
49 3uk6_A RUVB-like 2; hexameric 92.2 0.33 1.1E-05 37.4 6.4 69 32-100 259-333 (368)
50 3ksy_A SOS-1, SON of sevenless 91.7 0.8 2.7E-05 41.7 9.1 68 28-97 101-168 (1049)
51 1fnn_A CDC6P, cell division co 88.5 2 6.8E-05 32.8 7.8 77 32-108 193-284 (389)
52 2c9o_A RUVB-like 1; hexameric 86.6 1.4 4.6E-05 35.9 6.1 80 31-110 365-450 (456)
53 2v1u_A Cell division control p 86.1 2.1 7.2E-05 32.4 6.7 67 33-99 202-277 (387)
54 2qby_A CDC6 homolog 1, cell di 84.6 3 0.0001 31.5 6.8 70 32-101 197-275 (386)
55 3kw6_A 26S protease regulatory 84.5 0.86 2.9E-05 28.3 3.1 43 56-98 27-73 (78)
56 2dzn_B 26S protease regulatory 79.2 1.9 6.5E-05 27.0 3.4 30 70-99 40-69 (82)
57 3vlf_B 26S protease regulatory 78.5 2.2 7.4E-05 27.3 3.5 34 67-100 40-73 (88)
58 3k1j_A LON protease, ATP-depen 78.2 14 0.00047 31.1 9.3 49 49-97 313-374 (604)
59 1wwi_A Hypothetical protein TT 77.4 5.8 0.0002 28.7 5.8 58 32-91 3-60 (148)
60 3aji_B S6C, proteasome (prosom 76.6 1.8 6.2E-05 27.0 2.6 33 67-99 40-72 (83)
61 2r44_A Uncharacterized protein 76.0 14 0.00049 27.8 8.1 50 48-97 224-296 (331)
62 3fh2_A Probable ATP-dependent 75.5 3.7 0.00013 28.0 4.3 36 50-97 6-41 (146)
63 2krk_A 26S protease regulatory 75.5 2.8 9.7E-05 26.8 3.4 32 67-98 50-81 (86)
64 1khy_A CLPB protein; alpha hel 74.8 8.8 0.0003 25.7 6.0 36 50-97 5-40 (148)
65 1g8p_A Magnesium-chelatase 38 74.7 8.5 0.00029 28.9 6.5 51 48-98 265-322 (350)
66 2y1q_A CLPC N-domain, negative 73.7 3.5 0.00012 28.0 3.7 35 50-96 5-39 (150)
67 3fes_A ATP-dependent CLP endop 71.5 4.2 0.00014 27.8 3.7 37 50-98 7-43 (145)
68 1r4v_A Hypothetical protein AQ 71.2 6.2 0.00021 29.2 4.7 65 25-91 18-84 (171)
69 1k6k_A ATP-dependent CLP prote 68.8 4.2 0.00014 27.3 3.2 33 51-95 2-34 (143)
70 2qby_B CDC6 homolog 3, cell di 67.7 12 0.00043 28.3 6.1 66 32-99 197-271 (384)
71 2chg_A Replication factor C sm 61.9 13 0.00043 25.2 4.7 63 32-96 161-224 (226)
72 3fes_A ATP-dependent CLP endop 61.9 12 0.00041 25.4 4.5 39 49-99 80-118 (145)
73 3u85_B Histone-lysine N-methyl 60.3 4.1 0.00014 20.1 1.3 14 5-18 5-18 (21)
74 3h4m_A Proteasome-activating n 59.9 8.6 0.00029 28.2 3.7 33 66-98 226-258 (285)
75 3fh2_A Probable ATP-dependent 59.3 16 0.00055 24.7 4.8 38 49-98 80-117 (146)
76 1in4_A RUVB, holliday junction 59.2 33 0.0011 26.3 7.1 68 35-102 183-254 (334)
77 2i7a_A Calpain 13; calcium-dep 58.6 42 0.0014 23.2 9.6 40 73-113 80-123 (174)
78 3zri_A CLPB protein, CLPV; cha 56.3 9.3 0.00032 27.4 3.2 36 50-97 24-59 (171)
79 1k6k_A ATP-dependent CLP prote 54.8 35 0.0012 22.5 5.9 36 50-97 79-114 (143)
80 3bos_A Putative DNA replicatio 54.4 27 0.00093 24.1 5.5 61 34-96 176-241 (242)
81 1lv7_A FTSH; alpha/beta domain 53.0 15 0.00052 26.6 4.0 64 35-99 185-253 (257)
82 2f3n_A SH3 and multiple ankyri 52.2 10 0.00036 23.4 2.6 23 86-108 5-27 (76)
83 1njg_A DNA polymerase III subu 51.6 20 0.00068 24.4 4.3 63 32-95 185-248 (250)
84 3cs1_A Flagellar calcium-bindi 51.6 40 0.0014 23.7 6.0 26 76-101 55-81 (219)
85 3dtp_E RLC, myosin regulatory 51.2 56 0.0019 22.4 9.0 34 76-110 133-166 (196)
86 4b4t_L 26S protease subunit RP 51.1 14 0.00049 30.4 4.0 32 66-97 390-421 (437)
87 4b4t_M 26S protease regulatory 50.9 13 0.00043 30.7 3.6 33 66-98 390-422 (434)
88 4b4t_H 26S protease regulatory 50.5 12 0.00042 31.3 3.5 33 66-98 418-450 (467)
89 4b4t_I 26S protease regulatory 50.0 15 0.00052 30.6 4.0 67 30-97 350-422 (437)
90 4b4t_J 26S protease regulatory 49.9 16 0.00053 30.1 4.0 32 66-97 357-388 (405)
91 2kru_A Light-independent proto 49.4 12 0.00039 23.3 2.4 51 48-99 3-54 (63)
92 1w5s_A Origin recognition comp 48.5 86 0.0029 23.7 7.9 69 31-99 214-294 (412)
93 3bq7_A Diacylglycerol kinase d 47.7 13 0.00046 23.2 2.6 24 85-108 9-32 (81)
94 4b4t_K 26S protease regulatory 45.9 15 0.0005 30.3 3.2 32 66-97 382-413 (428)
95 3vfd_A Spastin; ATPase, microt 45.7 1E+02 0.0035 23.8 8.1 69 33-101 283-368 (389)
96 3zri_A CLPB protein, CLPV; cha 45.5 28 0.00097 24.8 4.4 38 49-98 97-135 (171)
97 2y1q_A CLPC N-domain, negative 44.6 28 0.00095 23.2 4.1 36 50-97 79-114 (150)
98 1uxc_A FRUR (1-57), fructose r 43.7 37 0.0013 20.4 4.1 35 31-66 11-45 (65)
99 3pm8_A PFCDPK2, calcium-depend 42.5 52 0.0018 22.7 5.4 79 31-112 21-100 (197)
100 1tiz_A Calmodulin-related prot 42.4 41 0.0014 18.3 4.2 34 78-111 10-43 (67)
101 2qz4_A Paraplegin; AAA+, SPG7, 42.2 11 0.00039 26.9 1.8 33 66-98 217-249 (262)
102 2l09_A ASR4154 protein; proto- 40.9 14 0.00047 22.9 1.8 49 49-98 3-52 (62)
103 1khy_A CLPB protein; alpha hel 40.8 34 0.0012 22.7 4.0 35 50-96 82-116 (148)
104 1hqc_A RUVB; extended AAA-ATPa 39.6 35 0.0012 25.2 4.3 69 32-100 168-240 (324)
105 2gle_A Neurabin-1; SAM domain, 38.0 12 0.00042 22.7 1.2 22 86-107 7-28 (74)
106 2d8c_A Phosphatidylcholine:cer 37.8 13 0.00046 24.5 1.5 23 85-107 19-41 (97)
107 3f8t_A Predicted ATPase involv 36.1 1.2E+02 0.0042 25.7 7.4 67 31-97 393-482 (506)
108 5pal_A Parvalbumin; calcium-bi 35.9 73 0.0025 19.3 5.9 80 32-114 6-89 (109)
109 3pvs_A Replication-associated 35.8 63 0.0022 26.2 5.5 68 32-99 165-245 (447)
110 1kw4_A Polyhomeotic; SAM domai 35.8 24 0.00083 22.7 2.5 24 85-108 16-40 (89)
111 1ixz_A ATP-dependent metallopr 35.5 25 0.00087 25.3 2.8 57 38-95 192-253 (254)
112 3pxg_A Negative regulator of g 35.4 62 0.0021 26.1 5.4 38 50-99 5-42 (468)
113 2kz2_A Calmodulin, CAM; TR2C, 35.3 66 0.0023 19.5 4.5 37 76-112 36-72 (94)
114 3dtp_E RLC, myosin regulatory 35.1 80 0.0027 21.5 5.3 12 85-96 105-116 (196)
115 3pfi_A Holliday junction ATP-d 34.3 35 0.0012 25.6 3.5 69 33-101 185-257 (338)
116 3fs7_A Parvalbumin, thymic; ca 34.3 74 0.0025 19.3 4.6 80 31-113 6-89 (109)
117 1iy2_A ATP-dependent metallopr 33.1 29 0.001 25.5 2.9 58 37-95 215-277 (278)
118 1wlz_A DJBP, CAP-binding prote 33.0 82 0.0028 19.0 5.2 28 74-101 29-56 (105)
119 3b9p_A CG5977-PA, isoform A; A 31.4 1.4E+02 0.0049 21.6 6.5 59 50-108 208-282 (297)
120 1sxj_D Activator 1 41 kDa subu 30.9 47 0.0016 24.7 3.7 68 31-99 191-264 (353)
121 2zbk_B Type 2 DNA topoisomeras 30.7 16 0.00055 30.9 1.1 56 42-97 427-484 (530)
122 1vyk_A Oxygen-evolving enhance 30.2 35 0.0012 24.4 2.7 27 4-35 8-34 (149)
123 3cuq_A Vacuolar-sorting protei 30.1 34 0.0012 26.2 2.8 16 84-99 113-128 (234)
124 1avs_A Troponin C; muscle cont 29.8 87 0.003 18.3 4.3 37 76-112 27-63 (90)
125 2joj_A Centrin protein; N-term 29.8 78 0.0027 17.7 4.6 22 80-101 18-39 (77)
126 1u5t_A Appears to BE functiona 29.7 65 0.0022 24.5 4.3 38 63-100 88-143 (233)
127 2kp7_A Crossover junction endo 29.5 1.1E+02 0.0038 19.5 5.1 53 66-118 18-85 (87)
128 1pva_A Parvalbumin; calcium bi 29.0 85 0.0029 19.0 4.2 81 31-113 6-89 (110)
129 3ezq_B Protein FADD; apoptosis 28.9 70 0.0024 21.7 4.0 38 76-114 55-92 (122)
130 2lv7_A Calcium-binding protein 28.4 40 0.0014 21.4 2.6 27 75-101 42-68 (100)
131 1jr3_A DNA polymerase III subu 28.0 54 0.0018 24.6 3.6 67 31-98 177-244 (373)
132 1s6j_A CDPK, calcium-dependent 27.9 65 0.0022 18.6 3.4 39 76-114 30-68 (87)
133 2q2e_B Type 2 DNA topoisomeras 27.8 22 0.00074 30.8 1.5 61 24-87 420-480 (621)
134 1rwy_A Parvalbumin alpha; EF-h 27.6 99 0.0034 18.6 4.3 79 32-113 6-88 (109)
135 3i5g_B Myosin regulatory light 27.6 1.4E+02 0.0047 19.8 6.0 54 46-111 5-58 (153)
136 2ovk_B RLC, myosin regulatory 27.4 1.1E+02 0.0036 19.5 4.7 35 78-112 25-59 (153)
137 2ktg_A Calmodulin, putative; e 27.0 94 0.0032 17.8 4.7 36 76-111 21-56 (85)
138 3pxi_A Negative regulator of g 26.8 98 0.0034 26.4 5.4 37 50-98 5-41 (758)
139 1jr3_D DNA polymerase III, del 26.6 37 0.0013 25.7 2.5 66 31-96 141-207 (343)
140 1exr_A Calmodulin; high resolu 26.2 1.3E+02 0.0044 19.1 6.3 41 73-113 87-127 (148)
141 1j7q_A CAVP, calcium vector pr 26.0 73 0.0025 18.5 3.4 23 79-101 24-46 (86)
142 3qrx_A Centrin; calcium-bindin 26.0 1.3E+02 0.0046 19.2 5.8 16 85-100 44-59 (169)
143 1u5t_B Defective in vacuolar p 25.7 65 0.0022 23.1 3.5 15 84-98 58-72 (169)
144 4a4j_A Pacszia, cation-transpo 25.2 33 0.0011 19.2 1.6 18 84-101 48-65 (69)
145 1qvr_A CLPB protein; coiled co 25.1 57 0.002 28.5 3.7 35 50-96 5-39 (854)
146 3pxg_A Negative regulator of g 25.1 1.6E+02 0.0054 23.7 6.2 55 32-98 55-115 (468)
147 2ovk_C Myosin catalytic light 25.0 1.3E+02 0.0045 19.2 4.8 40 73-112 89-128 (159)
148 1ofh_A ATP-dependent HSL prote 24.8 81 0.0028 22.8 4.0 52 49-100 233-301 (310)
149 1x4n_A FAR upstream element bi 24.3 49 0.0017 20.9 2.4 30 11-41 1-30 (92)
150 3d8b_A Fidgetin-like protein 1 24.1 2.4E+02 0.0082 21.5 7.1 51 49-99 269-335 (357)
151 3mse_B Calcium-dependent prote 24.0 1.6E+02 0.0055 19.5 8.3 37 74-112 44-80 (180)
152 2opo_A Polcalcin CHE A 3; calc 23.9 96 0.0033 17.9 3.6 16 84-99 26-41 (86)
153 2e8o_A SAM domain and HD domai 23.8 33 0.0011 22.4 1.5 16 87-102 31-46 (103)
154 3u0k_A Rcamp; fluorescent prot 23.6 1.6E+02 0.0054 24.5 5.9 56 45-112 290-345 (440)
155 3lf9_A 4E10_D0_1IS1A_001_C (T1 23.5 1.9E+02 0.0064 20.0 5.6 65 49-113 31-105 (121)
156 3j04_B Myosin regulatory light 23.1 1.2E+02 0.004 18.9 4.1 38 76-113 83-120 (143)
157 1r6b_X CLPA protein; AAA+, N-t 23.0 1.6E+02 0.0053 25.0 5.9 36 50-97 79-114 (758)
158 2pmy_A RAS and EF-hand domain- 22.9 1.1E+02 0.0038 18.2 3.8 25 76-100 34-58 (91)
159 3pxi_A Negative regulator of g 22.7 1.7E+02 0.0057 25.0 6.1 55 32-98 55-115 (758)
160 1r6b_X CLPA protein; AAA+, N-t 22.5 63 0.0022 27.5 3.4 34 51-96 2-35 (758)
161 2lmt_A Calmodulin-related prot 22.5 1.3E+02 0.0043 19.4 4.3 41 73-113 87-127 (148)
162 3iwl_A Copper transport protei 22.3 42 0.0014 19.1 1.6 17 85-101 45-61 (68)
163 3fwb_A Cell division control p 22.3 1.5E+02 0.0053 18.6 8.5 39 74-112 101-139 (161)
164 2qac_A Myosin A tail domain in 22.3 1.5E+02 0.0052 18.5 4.7 33 79-111 24-57 (146)
165 3j21_B 50S ribosomal protein L 22.2 63 0.0022 24.9 3.0 17 2-18 196-212 (239)
166 3i5g_C Myosin catalytic light 22.1 1.8E+02 0.006 19.4 5.1 40 73-112 89-128 (159)
167 3k21_A PFCDPK3, calcium-depend 22.0 68 0.0023 21.9 3.0 28 74-101 57-84 (191)
168 2chq_A Replication factor C sm 21.9 96 0.0033 22.4 3.9 65 31-97 160-225 (319)
169 1y1x_A Leishmania major homolo 21.9 1.9E+02 0.0064 19.4 6.0 40 73-112 97-136 (191)
170 1ich_A TNF-1, tumor necrosis f 21.8 63 0.0022 22.0 2.7 37 76-112 63-99 (112)
171 3omb_A Extracellular solute-bi 21.6 1.1E+02 0.0038 24.4 4.5 69 45-115 462-534 (535)
172 2mys_B Myosin; muscle protein, 21.6 1.7E+02 0.0057 18.8 4.8 20 81-100 37-56 (166)
173 1whz_A Hypothetical protein; a 21.6 40 0.0014 20.2 1.5 16 86-101 5-20 (70)
174 2l8n_A Transcriptional repress 21.4 94 0.0032 18.6 3.2 32 31-66 20-51 (67)
175 1bh9_A TAFII18; histone fold, 21.2 1.2E+02 0.0042 17.1 5.9 39 37-76 6-44 (45)
176 1mu5_A Type II DNA topoisomera 20.9 57 0.002 27.0 2.7 34 42-75 428-461 (471)
177 3nzz_A Cell invasion protein S 20.8 38 0.0013 27.1 1.5 88 27-117 38-128 (308)
178 2lbf_B 60S acidic ribosomal pr 20.6 1.5E+02 0.0052 18.3 4.1 28 74-101 7-34 (70)
179 2ahq_A Sigma-54, RNA polymeras 20.4 45 0.0015 21.1 1.5 39 77-119 29-67 (76)
180 1k9u_A Polcalcin PHL P 7; poll 20.3 99 0.0034 17.4 3.1 7 48-54 17-23 (78)
181 2eam_A Putative 47 kDa protein 20.1 87 0.003 19.2 2.9 25 85-109 9-33 (80)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=1.1e-31 Score=203.36 Aligned_cols=98 Identities=36% Similarity=0.648 Sum_probs=89.4
Q ss_pred CCCCCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCC
Q 033283 21 PRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 21 ~~~~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 100 (122)
+.+...++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||
T Consensus 5 ~~~~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 5 ASSSGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGF 83 (179)
T ss_dssp -------CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred ccCCCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcCh
Confidence 34457889999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhc
Q 033283 101 EDYIDPLKIYLTRYREVIC 119 (122)
Q Consensus 101 ~~~~~~l~~~l~~~re~~~ 119 (122)
++|+++|+.+|+.||+..+
T Consensus 84 ~~fv~~lk~~L~~yre~~~ 102 (179)
T 1jfi_B 84 GSYISEVKEVLQECKTVAL 102 (179)
T ss_dssp GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999764
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=6e-31 Score=179.77 Aligned_cols=92 Identities=73% Similarity=1.219 Sum_probs=86.0
Q ss_pred CccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccH
Q 033283 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI 104 (122)
Q Consensus 25 ~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~ 104 (122)
++++|+.||+++|.||||+.+|++.+||+||+.+|++|+++||.+|+.+|++.|.+++||||+++||..|++++||.+|+
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i 81 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYV 81 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 033283 105 DPLKIYLTRYRE 116 (122)
Q Consensus 105 ~~l~~~l~~~re 116 (122)
.+++.+|++||+
T Consensus 82 ~~~~~~l~~~r~ 93 (93)
T 1n1j_A 82 EPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999985
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.9e-30 Score=187.27 Aligned_cols=95 Identities=33% Similarity=0.559 Sum_probs=86.1
Q ss_pred ccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHH
Q 033283 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~ 105 (122)
+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|+.
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 033283 106 PLKIYLTRYREVICV 120 (122)
Q Consensus 106 ~l~~~l~~~re~~~~ 120 (122)
+|+.+|+.||+.++.
T Consensus 84 ~lk~~l~~yr~~~~~ 98 (128)
T 2byk_B 84 SLTQDLEVYRKVVKE 98 (128)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=5.8e-23 Score=135.79 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=64.7
Q ss_pred ccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 30 ~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
..||+|+|.||||+.+| +++||+||+++|++|+++||++|+++|++.|.+++||||+++||..|++.+
T Consensus 3 ~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp -CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 57999999999999999 689999999999999999999999999999999999999999999998764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.84 E-value=2.4e-21 Score=143.59 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=71.6
Q ss_pred ccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHH
Q 033283 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (122)
Q Consensus 30 ~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~ 105 (122)
..||+++|.||||+.||. .+||+||+++|++|+++|+.+|+++|+++|+++|||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999986 899999999999999999999999999999999999999999999999999998764
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.82 E-value=2.6e-20 Score=120.07 Aligned_cols=66 Identities=33% Similarity=0.448 Sum_probs=63.7
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
.||+++|.||||+. ++.+||+||+.+|++|+++|+.+|+.+|++.|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 5789999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=1.6e-19 Score=127.27 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=79.6
Q ss_pred cccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHH
Q 033283 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDP 106 (122)
Q Consensus 27 ~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~ 106 (122)
.+|..||++.|.||+|.. ...+||+|+.++|.+|+.+|+..++.+|..+|+++|||||+++||..|+++.|+..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 367899999999999999 368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHh
Q 033283 107 LKIYLTRY--REVI 118 (122)
Q Consensus 107 l~~~l~~~--re~~ 118 (122)
++.++++| +|..
T Consensus 81 l~~l~~~~lp~E~~ 94 (111)
T 3b0c_T 81 LHVLVERHLPLEYR 94 (111)
T ss_dssp HHHHHHHHSCHHHH
T ss_pred HHHHHHHhCcHHHH
Confidence 99999999 6643
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.78 E-value=4.4e-20 Score=134.92 Aligned_cols=96 Identities=19% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCcchHHHHHHh---c
Q 033283 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKC-QREKRKTINGDDLLWAMAT---L 98 (122)
Q Consensus 23 ~~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a-~~~~RkTI~~eDV~~Al~~---l 98 (122)
+.....++.||+++|+||||.. |+..+||++|..+|++|++.||.+|+..|+..| ...+||||+++||.+|++. +
T Consensus 11 s~~~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 11 ERPPTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp ------------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred CCCcccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 3344567899999999999998 778899999999999999999999999999999 9999999999999999985 4
Q ss_pred CCcccHHHHHHHHHHHHHHhc
Q 033283 99 GFEDYIDPLKIYLTRYREVIC 119 (122)
Q Consensus 99 gf~~~~~~l~~~l~~~re~~~ 119 (122)
+|..++-|.+..+..|+++.+
T Consensus 90 dFL~divP~ki~l~~~~~~~~ 110 (140)
T 2byk_A 90 EFLLQIVPQKIRVHQFQEMLR 110 (140)
T ss_dssp GGGTTTSCSCC----------
T ss_pred hhHhccccchhhHHHHHHHHH
Confidence 555555588999999998764
No 9
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.72 E-value=7.9e-18 Score=115.69 Aligned_cols=79 Identities=24% Similarity=0.292 Sum_probs=69.3
Q ss_pred ccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHH
Q 033283 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~ 105 (122)
...+..||.++|.||||.. |+..+||+||..++++|++.|+.+|+.+|+..|.+++||||+++||..|++..++.+|+.
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3456789999999999998 667799999999999999999999999999999999999999999999999988888764
No 10
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.72 E-value=1.4e-17 Score=123.37 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=69.6
Q ss_pred CCCCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 22 ~~~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
++++..+|+.||+++|.||||+. ...|||+||++.+++|+++|+.+|+.+|.++|+++|||||+++||.+|++.
T Consensus 73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 35677889999999999999999 467999999999999999999999999999999999999999999999985
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.72 E-value=1.4e-17 Score=118.40 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=69.8
Q ss_pred cccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccH
Q 033283 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI 104 (122)
Q Consensus 27 ~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~ 104 (122)
.....||+++|+||||.. |+..+||+||..++++|++.||.+|+.+|+..|..++||||+++||..|++..+..+|+
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 345679999999999976 77889999999999999999999999999999999999999999999999976655554
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.68 E-value=1.1e-16 Score=111.34 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcc
Q 033283 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (122)
Q Consensus 23 ~~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 102 (122)
-..++....||+++|.||++.... .+||.|+.+.+++++++|+..|+.+|.++|++++||||+++||..||+.++++-
T Consensus 20 k~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~l 97 (102)
T 1id3_B 20 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 97 (102)
T ss_dssp ----CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCE
T ss_pred HHHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCC
Confidence 345666778999999999999864 789999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 033283 103 Y 103 (122)
Q Consensus 103 ~ 103 (122)
|
T Consensus 98 Y 98 (102)
T 1id3_B 98 Y 98 (102)
T ss_dssp E
T ss_pred C
Confidence 6
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.65 E-value=2e-16 Score=106.15 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=70.7
Q ss_pred ccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCccc
Q 033283 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~ 103 (122)
++....||+++|.||++.... .+||+|+.+.+.++.+.|+..++.+|...|+++|||||+++||..||+.+|++-|
T Consensus 5 r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 455567999999999999864 7899999999999999999999999999999999999999999999999998766
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.63 E-value=7.3e-16 Score=99.87 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=61.2
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
.||+++|.||+|+. ...+||+++..+|+++++.|+..|+.+|+.+|++.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999987 35799999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.62 E-value=1.4e-15 Score=105.47 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.1
Q ss_pred CCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCccc
Q 033283 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (122)
Q Consensus 24 ~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~ 103 (122)
..++....||+++|.||++.... .+||.|+.+.|.++.+.|+..|+.+|..+|++++||||+++||..||+.++++.|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 45666667999999999999865 6999999999999999999999999999999999999999999999999998765
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.59 E-value=2.2e-15 Score=104.61 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=64.3
Q ss_pred CccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCccc
Q 033283 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (122)
Q Consensus 25 ~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~ 103 (122)
.++....||+++|.||++.... .+||.|+.+.|.++.+.|+..|+.+|..+|++++||||+++||..||+.++++.|
T Consensus 23 ~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 23 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp -------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 3555667999999999999865 6999999999999999999999999999999999999999999999999998765
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.51 E-value=1.2e-14 Score=99.97 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=60.0
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHH
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~ 105 (122)
..+.||.++|.||||.. ++..+||.||..++.++++.|+.+|+..|+..|.+.+||||+++||..|++.-+..+|+.
T Consensus 8 ~~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~ 84 (98)
T 1jfi_A 8 YNARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANK 84 (98)
T ss_dssp --CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC---------
T ss_pred cCCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHH
Confidence 35789999999999975 556799999999999999999999999999999999999999999999998766555544
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.31 E-value=5.1e-12 Score=83.89 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=64.7
Q ss_pred cccChhhHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 29 DRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 29 d~~LP~A~V~Ri~K~~lp---~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
++.||++++.|++|+... .+.+++.+|..+||++++.|+..|...||..|.+.||+||.++||--|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999999999954 35799999999999999999999999999999999999999999999987554
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.22 E-value=1.9e-11 Score=84.75 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=60.5
Q ss_pred CccccccChhhHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 25 VREQDRYLPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 25 ~~~~d~~LP~A~V~Ri~K~~lp~------~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
.+..++.||++++.|+|++...+ +.+++.+|..+||++++.|+..|...||..|.+.||+||.++||--|..
T Consensus 21 Qkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 21 QRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 35678999999999999999843 5799999999999999999999999999999999999999999988863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.20 E-value=3.4e-11 Score=80.81 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=63.7
Q ss_pred ccChhhHHHHHHHhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 30 RYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 30 ~~LP~A~V~Ri~K~~lp-----~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
+.||++++.|++|+... .+.+++.+|..+||++++.|+..|...||..|.+.||+||.++||--|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 56899999999999883 25799999999999999999999999999999999999999999999876443
No 21
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.17 E-value=3.7e-11 Score=87.64 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=65.8
Q ss_pred ccccccChhhHHHHHHHhhCCC-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCC
Q 033283 26 REQDRYLPIANISRIMKKALPA-----NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp~-----~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 100 (122)
+..++.||++++.|||++...+ +.+++.+|+.+||+++|.|+..|...||.+|.+.||+||.++||-.|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 5678899999999999998732 57999999999999999999999999999999999999999999999875543
No 22
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.15 E-value=6.3e-11 Score=87.70 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=64.3
Q ss_pred ccccccChhhHHHHHHHhhCCC-----CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 26 REQDRYLPIANISRIMKKALPA-----NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp~-----~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
+..++.||++++.|||++...+ +.+++.+|+.+||+++|.|+..|+..||.+|.+.||+||.++||-.|..-
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 5678899999999999998842 57999999999999999999999999999999999999999999988763
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.12 E-value=1.1e-10 Score=84.73 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.4
Q ss_pred ccccccChhhHHHHHHHhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 26 REQDRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp---~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
+..++.||++++.|||++... .+.+++.+|..+||+++|.|+..|...+|.+|.+.||+||.++||-.|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 457889999999999999943 36899999999999999999999999999999999999999999999976544
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.00 E-value=1.8e-09 Score=70.39 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred ccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 30 ~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
..||.++|.+|.++..- .++|.|+...|.+-++.-+..|+.+|.+.+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 47999999999999863 489999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.00 E-value=1e-09 Score=77.51 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=67.6
Q ss_pred HHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHHH
Q 033283 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (122)
Q Consensus 36 ~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~~ 114 (122)
+|.||+++...+ ++.+|+++..+|.+.+..|+..|+..+...|++.|||||+.+||..++++. +.|..+|+.|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 688999998764 577999999999999999999999999999999999999999999999974 5666666666
Q ss_pred HHHh
Q 033283 115 REVI 118 (122)
Q Consensus 115 re~~ 118 (122)
.+.+
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 26
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4.4e-09 Score=71.54 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 36 NISRIMKKALPAN-GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 36 ~V~Ri~K~~lp~~-~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
+|.+|+.+.++.. +.+|+++..+|.+.+..++..++..+...|++.|||||+++||..++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5889999998865 7899999999999999999999999999999999999999999999876
No 27
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.88 E-value=4.1e-09 Score=73.73 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=58.1
Q ss_pred HHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 36 ~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
+|.||+++...+ +.++|+++..+|.+.+..|+..|+.+|...|++.|||||+.+||..|++..
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 488999988642 468999999999999999999999999999999999999999999999984
No 28
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.84 E-value=7.7e-09 Score=75.36 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHHH
Q 033283 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (122)
Q Consensus 36 ~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~~ 114 (122)
+|.||+++...+ ++.||+++..+|.+.+..|+..|+..+...|+|.|||||+.+||..+++.. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 578999987653 678999999999999999999999999999999999999999999999974 3444445544
Q ss_pred HH
Q 033283 115 RE 116 (122)
Q Consensus 115 re 116 (122)
.+
T Consensus 98 ~~ 99 (140)
T 3vh5_A 98 SD 99 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 29
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.67 E-value=6.9e-08 Score=69.51 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=63.8
Q ss_pred cccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 27 ~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
-..+.||.+.|.|+||+.-- ..||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 21 ragLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 21 KAGLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GGTCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCCeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 34589999999999999743 24999999999999999999999999999999999999999999999983
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.67 E-value=7e-08 Score=69.24 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=64.4
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.||.+.|.|+||+.-....||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4589999999999999864345999999999999999999999999999999999999999999999884
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.67 E-value=7.1e-08 Score=68.74 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=63.4
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.||.+.|.|+||+.-- ..||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 20 agL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4589999999999999833 24999999999999999999999999999999999999999999999983
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.64 E-value=9.2e-08 Score=68.69 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=63.1
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++
T Consensus 22 agLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 4689999999999999733 2499999999999999999999999999999999999999999999998
No 33
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.63 E-value=1.6e-07 Score=60.82 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=56.5
Q ss_pred hHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 35 A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..|.||+|+..- -+++.++...|.+.+..++..|..+|..+|++.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 368899998753 5899999999999999999999999999999999999999999999874
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.62 E-value=1.2e-07 Score=67.28 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=63.7
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.||.+.|.|+||+.-- ..||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3589999999999999853 35999999999999999999999999999999999999999999999983
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.56 E-value=1.9e-07 Score=68.64 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=63.4
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.||.+.|.|+||+.-. ..||+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 41 agLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 4589999999999999743 24999999999999999999999999999999999999999999999983
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.2e-07 Score=67.53 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHhhCC---C---CccccHHHHHHHHHHHHHHHHHHH----------------------------------
Q 033283 32 LPIANISRIMKKALP---A---NGKIAKDAKETVQECVSEFISFIT---------------------------------- 71 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp---~---~~~iskdA~~al~~~a~~FI~~la---------------------------------- 71 (122)
+|+.+..|++++... . +.+++.+|..+||++++.|+..|.
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l 81 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFL 81 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHH
Confidence 677777777776432 1 456777777777776666665554
Q ss_pred ----HHHHHHHHhcCCCCCCcchHHHHHHhcCCccc
Q 033283 72 ----SEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (122)
Q Consensus 72 ----~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~ 103 (122)
.+|..+|++.+||||+++||.-||+..|-.-|
T Consensus 82 ~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 82 ESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp HHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 58889999999999999999999999886544
No 37
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.46 E-value=4.8e-07 Score=68.45 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=63.8
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.||.+.|.|+||+.-....||+.+|...|..+.+-+...|...|...|.+.||++|+++||..|++.
T Consensus 102 agl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 3589999999999999743235999999999999999999999999999999999999999999999883
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.7e-07 Score=71.35 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=63.8
Q ss_pred ccccChhhHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 28 QDRYLPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~------~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
..+.+|+.++.|+|++...+ +.+++.+|..+||++++.|+.-|...+|.+|.+.+|.||.+.|+..|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 45789999999999998754 5799999999999999999999999999999999999999999999987544
No 39
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.33 E-value=1.4e-06 Score=62.12 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=59.0
Q ss_pred hHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 35 A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
..|.|++|++-| +..||.+|...|+.....+..-|+.+|...+..++|+||+.+||..|++-+
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 568999999988 578999999999999999999999999999999999999999999998754
No 40
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.30 E-value=1.9e-06 Score=61.74 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=59.0
Q ss_pred hHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 35 A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
..|+|++|++-| +..||.+|...|+.....+..-|+.+|...+..++|+||+..||..|++-|
T Consensus 40 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 40 IYVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 469999999988 578999999999999999999999999999999999999999999998754
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.2e-07 Score=69.74 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=52.8
Q ss_pred HHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 39 RIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 39 Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
||++... .-|||.++.+.+.+..+.|+..+...|..+|++.+||||+++||.-||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555543 3589999999999999999999999999999999999999999999999764
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.21 E-value=8.3e-06 Score=54.69 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=62.2
Q ss_pred cccChhhHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 29 DRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 29 d~~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
+..+|..+|.||++.... ++.+|++||..++.+....||..-...|...++.++..+|..+|+-+.+=.
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 467999999999999886 578999999999999999999999999999999888899999999887654
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=98.19 E-value=8.4e-06 Score=54.27 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=62.4
Q ss_pred ccccccChhhHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 26 REQDRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 26 ~~~d~~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.+.+..+|..+|.||++.... +..||++||..++.+....||..-...|...++.++-..|..+|+-+.+-.
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 345678999999999999987 467999999999999999999999999999998899999999999887654
No 44
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.06 E-value=1.5e-05 Score=60.24 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=58.3
Q ss_pred hHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 35 A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.-|.|++|+.-| +..||.||...|......+...|+.+|...+...+|+||+.+||..|++-
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 468999999988 57899999999999999999999999999999999999999999999873
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.94 E-value=5.9e-05 Score=49.62 Aligned_cols=66 Identities=17% Similarity=0.340 Sum_probs=62.0
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
-|++..+..+|++.-| +..+..|+.++|.+.|.+||.-++..|-..|++-+-.||...||.-.|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999976 78999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.72 E-value=0.00018 Score=48.51 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=60.7
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcchHHHHHHhcC
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR-KTINGDDLLWAMATLG 99 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~R-kTI~~eDV~~Al~~lg 99 (122)
.||++.|+|||...+. ..++.+...+|.=.+.+||..|..+|.+++.+.+. .-|.|.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~~--~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSITG--TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 5999999999999984 68999999999999999999999999999987764 4899999999988764
No 47
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00064 Score=45.78 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred ChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033283 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQR 80 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~ 80 (122)
||+.+|.||++....+ +.||++||..++++...+||..-...|++..+.
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999987764 679999999999999999998877777665444
No 48
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00045 Score=49.02 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=7.3
Q ss_pred cccHHHHHHHHHHHHHH
Q 033283 50 KIAKDAKETVQECVSEF 66 (122)
Q Consensus 50 ~iskdA~~al~~~a~~F 66 (122)
|||.|+.+.+.+..++|
T Consensus 64 RIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34444444444444444
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.24 E-value=0.33 Score=37.40 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=51.5
Q ss_pred ChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh-cCC
Q 033283 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMAT-LGF 100 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~----~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~-lgf 100 (122)
++...+..|++..+.. +..++.++...|.+.+. -.+..+...|...|...++++|+.+||..|++. ++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~ 333 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE 333 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCH
Confidence 4566677777755532 45799999999988876 244555666777788889999999999999986 443
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=91.68 E-value=0.8 Score=41.67 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=53.7
Q ss_pred ccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 28 ~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..+.+|.+.|.|++|.... .||+..|..-+.-..+-....+...|...|...+++.|++.||..|+..
T Consensus 101 ~~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 101 NPLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CCccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 3488999999999977764 5999888777776655555555556667788889999999999999873
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.50 E-value=2 Score=32.81 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=55.0
Q ss_pred ChhhHHHHHHHhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 32 LPIANISRIMKKALPA---NGKIAKDAKETVQECV------------SEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~---~~~iskdA~~al~~~a------------~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
|+...+..+++..+.. ...++.++...+.+.+ --++..+...|...|...++.+|+.+||..+++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 4446666676665532 2478999999888887 234556667777888888899999999999999
Q ss_pred hcCCcccHHHHH
Q 033283 97 TLGFEDYIDPLK 108 (122)
Q Consensus 97 ~lgf~~~~~~l~ 108 (122)
......+...++
T Consensus 273 ~~~~~~~~~~l~ 284 (389)
T 1fnn_A 273 EVLFGISEEVLI 284 (389)
T ss_dssp HHSCCCCHHHHH
T ss_pred HHhhhhHHHHHH
Confidence 876655544443
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.61 E-value=1.4 Score=35.87 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=54.8
Q ss_pred cChhhHHHHHHHhhCC-CCccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh-cCCcccH
Q 033283 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECV-S---EFISFITSEASDKCQREKRKTINGDDLLWAMAT-LGFEDYI 104 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a-~---~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~-lgf~~~~ 104 (122)
.++...+..+++..+. .+..++.++...+.+.+ . .....|...|...|..+++.+|+.+||..|+.- ++...-+
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~ 444 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSA 444 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHH
Confidence 3455666777765543 24578999988888876 2 345566677888899999999999999999875 3444334
Q ss_pred HHHHHH
Q 033283 105 DPLKIY 110 (122)
Q Consensus 105 ~~l~~~ 110 (122)
..|+++
T Consensus 445 ~~~~~~ 450 (456)
T 2c9o_A 445 KILADQ 450 (456)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 444433
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.14 E-value=2.1 Score=32.45 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=50.9
Q ss_pred hhhHHHHHHHhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 33 PIANISRIMKKALP---ANGKIAKDAKETVQECVS------EFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 33 P~A~V~Ri~K~~lp---~~~~iskdA~~al~~~a~------~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
....+..|++..+. ....++.++...+.+.+. -.+..+...|...|...++.+|+.+||..|++.+.
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 35666677766543 145789999998888876 45556667778888888899999999999998763
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.61 E-value=3 Score=31.52 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHhhCCC---CccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 32 LPIANISRIMKKALPA---NGKIAKDAKETVQECVS------EFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~---~~~iskdA~~al~~~a~------~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
|....+..+++..+.. ...++.++...+.+.+. ..+..+...|...+...++.+|+.+||..|++++...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 275 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERD 275 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhc
Confidence 4456677777664321 35789999888888775 2344566677888888889999999999999876543
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=84.52 E-value=0.86 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 56 KETVQECVSEF----ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 56 ~~al~~~a~~F----I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
...|.+.++-| |..|..+|...|...++..|+.+|+..|+++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444444 67777888888989999999999999999863
No 56
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=79.21 E-value=1.9 Score=27.02 Aligned_cols=30 Identities=37% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 70 ITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 70 la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
|..+|...|...++..|+.+|+..|+++.-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 444566677777889999999999999864
No 57
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=78.46 E-value=2.2 Score=27.30 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCC
Q 033283 67 ISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 67 I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 100 (122)
|..|..+|...|.+.++..|+.+|+..|++..-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5566667777888888999999999999997644
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=78.20 E-value=14 Score=31.07 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=40.1
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 49 GKIAKDAKETVQECVS-------------EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 49 ~~iskdA~~al~~~a~-------------~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
..++.+|...|.+.+. .-+..|...|...|...++.+|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3689999998888653 345556667888999999999999999999965
No 59
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=77.45 E-value=5.8 Score=28.72 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=50.9
Q ss_pred ChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchH
Q 033283 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV 91 (122)
+|.+.+.|+.+.+.. .-|.|+-..-+.+..+.=+.-|.--|...|+.++|.+|.+.|+
T Consensus 3 m~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 577889999999974 6777888888888888888888899999999999999999885
No 60
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=76.57 E-value=1.8 Score=26.98 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 67 ISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 67 I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
|..|..+|...|...++..|+.+|+..|+++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445666777888888899999999999999753
No 61
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=76.04 E-value=14 Score=27.81 Aligned_cols=50 Identities=12% Similarity=0.009 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 48 NGKIAKDAKETVQECVSEF-----------------------ISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 48 ~~~iskdA~~al~~~a~~F-----------------------I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
++.++.++...+.+.+... ...+...|...|.-.+|..|+++||..++..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4568888888777654321 2234455667778889999999999999874
No 62
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=75.50 E-value=3.7 Score=28.05 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
++|..+..+|.. |.+.|...+-..|.++|++.||=+
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHh
Confidence 678888888877 577788889999999999999854
No 63
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=75.50 E-value=2.8 Score=26.78 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 67 ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 67 I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
|..|..+|...|....+..|+.+|+..|+++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456677777888888999999999999863
No 64
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=74.79 E-value=8.8 Score=25.74 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
++|..++.+|.. |...|...+...|.++|++.||=+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~ 40 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLN 40 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHc
Confidence 678888888877 577788889999999999999854
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.69 E-value=8.5 Score=28.92 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=40.2
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 48 NGKIAKDAKETVQECVSE-------FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 48 ~~~iskdA~~al~~~a~~-------FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
...++.++...|.+.+.. -+..+...|...|...++.+|+.+||..|+...
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 358999999999887653 345556667778888899999999999998843
No 66
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=73.68 E-value=3.5 Score=27.95 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=29.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
+++..+..+|.. |...|...+-..|.++|++.||=
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl 39 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLV 39 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 678888888877 56778888999999999999884
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=71.48 E-value=4.2 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
++|..++.+|.. |...|...+-..|.++|++.||=+-
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 43 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLRE 43 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhC
Confidence 688888888887 5677888899999999999998643
No 68
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=71.20 E-value=6.2 Score=29.18 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=55.2
Q ss_pred Cccccc--cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchH
Q 033283 25 VREQDR--YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91 (122)
Q Consensus 25 ~~~~d~--~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV 91 (122)
.++++. -+|.+-+.|+.+.+.. .-|.|+-..-+.+.++.=+.-|.--|...|+.++|.+|.+.|+
T Consensus 18 ~~~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 18 SKIETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp ---CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 345555 7899999999999975 7788888888999999888888889999999999999999885
No 69
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=68.83 E-value=4.2 Score=27.33 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHH
Q 033283 51 IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 95 (122)
Q Consensus 51 iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al 95 (122)
+|+++..+|+. |.+.|...+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 56667777666 5677888899999999999887
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.74 E-value=12 Score=28.32 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=45.6
Q ss_pred ChhhHHHHHHHhhCC---CCccccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 32 LPIANISRIMKKALP---ANGKIAKDAKETVQECVS---E---FISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp---~~~~iskdA~~al~~~a~---~---FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
|....+..|++..+. ....++.++...+.+.+. - .+..+...|...|. +..+|+.+||..+++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777776442 135789999888888776 1 23344455566665 667899999999998764
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=61.94 E-value=13 Score=25.23 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=41.1
Q ss_pred ChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
++..-+.++++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666666665432 3468898888887776544444444444444433 6899999999875
No 72
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=61.86 E-value=12 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
..+|.++..+|.+ |...|...+...|+.+|++.||=+-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4578888888877 56778888999999999999986544
No 73
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=60.28 E-value=4.1 Score=20.06 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCC
Q 033283 5 APASPGGGSHESGE 18 (122)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (122)
-||-|||++...++
T Consensus 5 fparpg~s~~sg~g 18 (21)
T 3u85_B 5 FPARPGTTGGGGGG 18 (26)
T ss_pred cccCCCcccCCCcc
Confidence 38899886554443
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=59.90 E-value=8.6 Score=28.20 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
-|..|...|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 466677788888989999999999999999864
No 75
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=59.28 E-value=16 Score=24.73 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
..+|.++..+|.+ |...|...+...|+.+|++.||=+-
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 4588888888887 5677888899999999999998643
No 76
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=59.22 E-value=33 Score=26.26 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=45.0
Q ss_pred hHHHHHHHhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcc
Q 033283 35 ANISRIMKKALP-ANGKIAKDAKETVQECVS---EFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (122)
Q Consensus 35 A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~---~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~ 102 (122)
..+..|++.... -+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++.+.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 355555554331 135688888877766432 23344445566677777888899999999999887643
No 77
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=58.64 E-value=42 Score=23.18 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhc----CCcccHHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATL----GFEDYIDPLKIYLTR 113 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~l----gf~~~~~~l~~~l~~ 113 (122)
.|....- ++.-+|+.+++..+|..+ |+.-=...++..+..
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~~ 123 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLR 123 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHHH
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHHH
Confidence 5666667 777889999999999999 875333444444433
No 78
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=56.25 E-value=9.3 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
++|..++.+|+. |.+.|...+-..|.++|++.||=+
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~ 59 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLD 59 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTT
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHH
Confidence 567777777776 567788889999999999998854
No 79
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=54.75 E-value=35 Score=22.52 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.+|..+..+|.+ |...+...+...|+.+|++.||=+
T Consensus 79 ~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 79 QPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp EECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 567777777766 677788888999999999999865
No 80
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.37 E-value=27 Score=24.13 Aligned_cols=61 Identities=2% Similarity=0.004 Sum_probs=36.5
Q ss_pred hhHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 34 IANISRIMKKALP-ANGKIAKDAKETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 34 ~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~----~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
...+.++++..+. .+..++.++...|.+.+. ..+..| ..+...+..++ ++|+.+||..+++
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l-~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL-DRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH-HHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH-HHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3445555554432 235789999888887654 222222 23444454444 4699999998875
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=53.04 E-value=15 Score=26.56 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=38.9
Q ss_pred hHHHHHHHhhCCCCccccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 35 ANISRIMKKALPANGKIAKDA-KETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 35 A~V~Ri~K~~lp~~~~iskdA-~~al~~~a~----~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
..-..|++..+. ...++.++ ...+.+... .-+..+...|...|...++++|+.+|+..|+++.-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 334445555543 23344443 233333222 23445666777788888899999999999998753
No 82
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=52.15 E-value=10 Score=23.40 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.2
Q ss_pred CCcchHHHHHHhcCCcccHHHHH
Q 033283 86 INGDDLLWAMATLGFEDYIDPLK 108 (122)
Q Consensus 86 I~~eDV~~Al~~lgf~~~~~~l~ 108 (122)
=+++||..-|+.+||++|.+...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36789999999999999987643
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.63 E-value=20 Score=24.42 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHH
Q 033283 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 95 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al 95 (122)
|....+..+++..+.. +..++.++...|.+.+.--..++-......+ ..++++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 4556666777655532 4578899988888877655555554444433 3345689999998875
No 84
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=51.56 E-value=40 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHhcCCCCCCcchHHHHHHh-cCCc
Q 033283 76 DKCQREKRKTINGDDLLWAMAT-LGFE 101 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~-lgf~ 101 (122)
...-.++.-+|+.+++..+|.. +|+.
T Consensus 55 ~~~D~d~dG~I~~~El~~~l~~~lg~~ 81 (219)
T 3cs1_A 55 KKFDKNETGKLCYDEVYSGCLEVLKLD 81 (219)
T ss_dssp HHHCTTCSSCBCHHHHHHHHHHTTCGG
T ss_pred HHhCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 3344556678999999988887 7774
No 85
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=51.18 E-value=56 Score=22.37 Aligned_cols=34 Identities=12% Similarity=-0.130 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIY 110 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~ 110 (122)
...-.++.-+|+.+++..+| .+|..--...+...
T Consensus 133 ~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l 166 (196)
T 3dtp_E 133 NLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQA 166 (196)
T ss_dssp HTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHH
Confidence 33344566678888888888 88754333333333
No 86
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.15 E-value=14 Score=30.42 Aligned_cols=32 Identities=34% Similarity=0.310 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
=|..|..+|...|.+.++..|+.+|+..|+++
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 36677778888888999999999999999985
No 87
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.90 E-value=13 Score=30.74 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
-|..|..+|...|.+.+++.|+.+|+..|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 466777888888888999999999999999864
No 88
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.46 E-value=12 Score=31.34 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
=|..|..+|...|.+.+|+.|+.+|+..|+++.
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 356777888888989999999999999999863
No 89
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.03 E-value=15 Score=30.56 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=42.5
Q ss_pred ccChhhH-HHHHHHhhCCCCccccHHH-HHHHHHHHH----HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 30 RYLPIAN-ISRIMKKALPANGKIAKDA-KETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 30 ~~LP~A~-V~Ri~K~~lp~~~~iskdA-~~al~~~a~----~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
+.+|-.. -..|++-.+. .+.++.|. ...|.+.+. -=|..|..+|...|.+.+|..|+.+|+..|+++
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4555322 2344544443 34454442 344444332 346677888888899999999999999999975
No 90
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.92 E-value=16 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
=|..|..+|...|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888899999999999999999985
No 91
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=49.44 E-value=12 Score=23.33 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCcchHHHHHHhcC
Q 033283 48 NGKIAKDAKETVQECVSEFISFITSEAS-DKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 48 ~~~iskdA~~al~~~a~~FI~~la~~A~-~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
.+.++.||...|.+ .--||.--+.... +.|...|...|+.+.+..|-+.++
T Consensus 3 ~l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 45788999888888 5567766665444 789999999999999999877654
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=48.49 E-value=86 Score=23.71 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=49.2
Q ss_pred cChhhHHHHHHHhhCC---CCccccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 31 YLPIANISRIMKKALP---ANGKIAKDAKETVQECVS---------EFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp---~~~~iskdA~~al~~~a~---------~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
.|...-+..+++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++.++
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3455666777654331 123588888888888777 3677777778888888888899999999888765
Q ss_pred C
Q 033283 99 G 99 (122)
Q Consensus 99 g 99 (122)
.
T Consensus 294 ~ 294 (412)
T 1w5s_A 294 E 294 (412)
T ss_dssp -
T ss_pred h
Confidence 4
No 93
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=47.68 E-value=13 Score=23.18 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.0
Q ss_pred CCCcchHHHHHHhcCCcccHHHHH
Q 033283 85 TINGDDLLWAMATLGFEDYIDPLK 108 (122)
Q Consensus 85 TI~~eDV~~Al~~lgf~~~~~~l~ 108 (122)
.-+++||..-|+.+||++|.+...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987554
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.87 E-value=15 Score=30.28 Aligned_cols=32 Identities=38% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
=|..|..+|...|.+.+|..|+.+|+..|++.
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 36778888888899999999999999999974
No 95
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=45.70 E-value=1e+02 Score=23.82 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=44.8
Q ss_pred hhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCCCCcchHHHHH
Q 033283 33 PIANISRIMKKALPA-NGKIAKDAKETVQECVSE----FISFITSEASDKCQRE------------KRKTINGDDLLWAM 95 (122)
Q Consensus 33 P~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~----FI~~la~~A~~~a~~~------------~RkTI~~eDV~~Al 95 (122)
+......|++..+.. +..++.+....|.+.+.- -|..|...|...+.++ ....|+.+|+..++
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 344455566655532 346888888777776543 4556666666555554 45689999999999
Q ss_pred HhcCCc
Q 033283 96 ATLGFE 101 (122)
Q Consensus 96 ~~lgf~ 101 (122)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 976543
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=45.48 E-value=28 Score=24.76 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCcchHHHHHHhc
Q 033283 49 GKIAKDAKETVQECVSEFISFITSEASDKCQ-REKRKTINGDDLLWAMATL 98 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~FI~~la~~A~~~a~-~~~RkTI~~eDV~~Al~~l 98 (122)
..+|.++..+|++ |...|. +-|...|+.+||+.||=+-
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4588888888887 677888 8899999999999998543
No 97
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=44.61 E-value=28 Score=23.25 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.+|..+..+|.. |...|...+...|+.+|++.||=.
T Consensus 79 ~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 79 HYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp EECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 567776666655 567777788899999999998853
No 98
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=43.66 E-value=37 Score=20.38 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.8
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~F 66 (122)
.+..++|.|++...- ....||.|.+..|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 467889999998542 11378999998888887664
No 99
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=42.53 E-value=52 Score=22.67 Aligned_cols=79 Identities=10% Similarity=0.164 Sum_probs=39.7
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF-ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKI 109 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~F-I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~ 109 (122)
.|....+.|+-+=. ..-++.+.+...+.+..+.- +..| .++....-.++.-+|+.+++..+|+.+|+.--...++.
T Consensus 21 ~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~ 97 (197)
T 3pm8_A 21 ELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQ 97 (197)
T ss_dssp CCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHHHH
T ss_pred CCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHH
Confidence 34555565554422 12345554444443322111 1111 22334445667778999999999999987544444444
Q ss_pred HHH
Q 033283 110 YLT 112 (122)
Q Consensus 110 ~l~ 112 (122)
.++
T Consensus 98 l~~ 100 (197)
T 3pm8_A 98 VLR 100 (197)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 100
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=42.37 E-value=41 Score=18.29 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=18.5
Q ss_pred HHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHH
Q 033283 78 CQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (122)
Q Consensus 78 a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 111 (122)
.-.++.-.|+.+++..+++.+|..--...++..+
T Consensus 10 ~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 43 (67)
T 1tiz_A 10 FDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFF 43 (67)
T ss_dssp HCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3344555677777777777666543333333333
No 101
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=42.19 E-value=11 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
-|..|...|...|...++.+|+.+|+..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 355566667777777888999999999999864
No 102
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=40.89 E-value=14 Score=22.92 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=36.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCcchHHHHHHhc
Q 033283 49 GKIAKDAKETVQECVSEFISFITSEAS-DKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~FI~~la~~A~-~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
+.++.||...|.+ .--|+.--+.... +.|...|...|+.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 4678888888877 4556665555443 78999999999999998886654
No 103
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=40.78 E-value=34 Score=22.69 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
.+|..+..+|.+ |...+...+...|+.+|++.||=
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 356665555555 56777777889999999999987
No 104
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=39.56 E-value=35 Score=25.17 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCC
Q 033283 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSEF---ISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~F---I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf 100 (122)
++..-+..+++..+.. +..++.++...|.+.+.-. +..+...+...|...+...|+.+|+..+++.+..
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGL 240 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 4556666666665432 4578999988888775322 2333333444445556778999999999887664
No 105
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=37.95 E-value=12 Score=22.70 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=18.1
Q ss_pred CCcchHHHHHHhcCCcccHHHH
Q 033283 86 INGDDLLWAMATLGFEDYIDPL 107 (122)
Q Consensus 86 I~~eDV~~Al~~lgf~~~~~~l 107 (122)
=+++||..-|+.+||++|.+..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999998887643
No 106
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=37.80 E-value=13 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.3
Q ss_pred CCCcchHHHHHHhcCCcccHHHH
Q 033283 85 TINGDDLLWAMATLGFEDYIDPL 107 (122)
Q Consensus 85 TI~~eDV~~Al~~lgf~~~~~~l 107 (122)
.-+.+||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35889999999999999998543
No 107
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=36.10 E-value=1.2e+02 Score=25.69 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=41.9
Q ss_pred cChhhHHHHHHHhhC--CCCccccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCCCC
Q 033283 31 YLPIANISRIMKKAL--PANGKIAKDAKETVQECVSEF---------------------ISFITSEASDKCQREKRKTIN 87 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~l--p~~~~iskdA~~al~~~a~~F---------------------I~~la~~A~~~a~~~~RkTI~ 87 (122)
.++...+.+.+..+- --...+++++.+.|.+..... +..|...|...|.-.+|..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355566665554332 012468888877776543322 123445666778888999999
Q ss_pred cchHHHHHHh
Q 033283 88 GDDLLWAMAT 97 (122)
Q Consensus 88 ~eDV~~Al~~ 97 (122)
++||..|++-
T Consensus 473 ~eDV~~Ai~L 482 (506)
T 3f8t_A 473 PEDVDIAAEL 482 (506)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 108
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=35.90 E-value=73 Score=19.29 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHhhCCCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc---CCcccHHHH
Q 033283 32 LPIANISRIMKKALPANGKIAKDA-KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPL 107 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~~~~iskdA-~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~~~l 107 (122)
++..-|.++++..=. +..|+-+- ..++... ..-.. -...+....-.++.-.|+.+++..+|..+ |..--...+
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~eF~~~~~~~-~~~~~-~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~ 82 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYKRFFHLVGLK-GKTDA-QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTET 82 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHHHHHHHHTCT-TCCHH-HHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred CCHHHHHHHHHHhCC-CCcCcHHHHHHHHhhc-cCcHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 566778888887643 55665432 2221100 00000 01234556666777889999999999988 665555555
Q ss_pred HHHHHHH
Q 033283 108 KIYLTRY 114 (122)
Q Consensus 108 ~~~l~~~ 114 (122)
+..++.+
T Consensus 83 ~~~~~~~ 89 (109)
T 5pal_A 83 KALLAAG 89 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.84 E-value=63 Score=26.20 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHhhCC--------CCccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhc--CCCCCCcchHHHHHHhc
Q 033283 32 LPIANISRIMKKALP--------ANGKIAKDAKETVQECVSEFISFIT---SEASDKCQRE--KRKTINGDDLLWAMATL 98 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp--------~~~~iskdA~~al~~~a~~FI~~la---~~A~~~a~~~--~RkTI~~eDV~~Al~~l 98 (122)
++...+..+++..+. .+..++.++...|.+.+.--+..+- ..+...|... ++.+|+.+||..++...
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 566667777766654 2356999999999887542222222 2233333322 56789999999999865
Q ss_pred C
Q 033283 99 G 99 (122)
Q Consensus 99 g 99 (122)
.
T Consensus 245 ~ 245 (447)
T 3pvs_A 245 S 245 (447)
T ss_dssp C
T ss_pred h
Confidence 3
No 110
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=35.80 E-value=24 Score=22.66 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.6
Q ss_pred CCCcchHHHHHHhc-CCcccHHHHH
Q 033283 85 TINGDDLLWAMATL-GFEDYIDPLK 108 (122)
Q Consensus 85 TI~~eDV~~Al~~l-gf~~~~~~l~ 108 (122)
.=+.+||..-|+.+ ||++|....+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9998876544
No 111
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=35.49 E-value=25 Score=25.30 Aligned_cols=57 Identities=23% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHhhCCCCccccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCcchHHHHH
Q 033283 38 SRIMKKALPANGKIAKDA-KETVQECVSEF----ISFITSEASDKCQREKRKTINGDDLLWAM 95 (122)
Q Consensus 38 ~Ri~K~~lp~~~~iskdA-~~al~~~a~~F----I~~la~~A~~~a~~~~RkTI~~eDV~~Al 95 (122)
.+|++..+. +..++.|+ ...+.+.+.-| +..+..+|...|...++.+|+.+|+.+|+
T Consensus 192 ~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 192 EQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 345544332 33444443 34444433322 33445566667777888899999999886
No 112
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.41 E-value=62 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcC
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lg 99 (122)
++|..+..+|.. |...|...+-..|.++|++.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 678888888877 56778888999999999999986543
No 113
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.29 E-value=66 Score=19.54 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
...-.++.-+|+.+++..+|+.+|..-=...++..++
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3344556667888888888888776533344444433
No 114
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=35.08 E-value=80 Score=21.54 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=6.0
Q ss_pred CCCcchHHHHHH
Q 033283 85 TINGDDLLWAMA 96 (122)
Q Consensus 85 TI~~eDV~~Al~ 96 (122)
+|+.++.+..+.
T Consensus 105 ~i~~~eF~~~~~ 116 (196)
T 3dtp_E 105 PINFTMFLTIFG 116 (196)
T ss_dssp CCBHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 455555555544
No 115
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=34.31 E-value=35 Score=25.57 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=46.0
Q ss_pred hhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 33 PIANISRIMKKALPA-NGKIAKDAKETVQECVSEF---ISFITSEASDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 33 P~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~F---I~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
+...+..+++..+.. +..++.++...|.+.+.-. +..+...+...|...++.+|+.+|+..+++.+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 355555566554431 3568999988888754322 33334445567777788899999999999987764
No 116
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=34.26 E-value=74 Score=19.25 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=45.6
Q ss_pred cChhhHHHHHHHhhCCCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc---CCcccHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDA-KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDP 106 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA-~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~~~ 106 (122)
.++..-|.++++..= .+..|+-+- ..++... ..- ..-...+....-.++.-.|+.+++..+|..+ |..--...
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~eF~~~~~~~-~~~-~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 82 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYKSFFSTVGLS-SKT-PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAE 82 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCT-TCC-HHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHhcC-CCc-HHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHH
Confidence 456777888888753 355666432 2222100 000 0012234555666777889999999999998 55544455
Q ss_pred HHHHHHH
Q 033283 107 LKIYLTR 113 (122)
Q Consensus 107 l~~~l~~ 113 (122)
++..++.
T Consensus 83 ~~~~~~~ 89 (109)
T 3fs7_A 83 TKAFLAA 89 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 117
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=33.10 E-value=29 Score=25.50 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHhhCCCCccccHHH-HHHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCCcchHHHHH
Q 033283 37 ISRIMKKALPANGKIAKDA-KETVQECVSEF----ISFITSEASDKCQREKRKTINGDDLLWAM 95 (122)
Q Consensus 37 V~Ri~K~~lp~~~~iskdA-~~al~~~a~~F----I~~la~~A~~~a~~~~RkTI~~eDV~~Al 95 (122)
-.+|++..+. ...++.|+ ...+.+.+.-| |..+..+|...|...++.+|+.+|+..|+
T Consensus 215 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 215 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 3445554432 33444443 34444433222 33445566667777788899999999886
No 118
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=33.03 E-value=82 Score=19.01 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=20.3
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 74 ASDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 74 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 4445556666788888888888888765
No 119
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=31.44 E-value=1.4e+02 Score=21.57 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCCCCcchHHHHHHhcCCcccHHHHH
Q 033283 50 KIAKDAKETVQECVSE----FISFITSEASDKCQREK------------RKTINGDDLLWAMATLGFEDYIDPLK 108 (122)
Q Consensus 50 ~iskdA~~al~~~a~~----FI~~la~~A~~~a~~~~------------RkTI~~eDV~~Al~~lgf~~~~~~l~ 108 (122)
.++.++...+.+.+.- -+..|..+|...+.+.. ...|+.+|+..|++...-.-....++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4777777777766543 33455555655555432 35799999999999876544444444
No 120
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.94 E-value=47 Score=24.67 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=40.7
Q ss_pred cChhhHHHHHHHhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CCCCcchHHHHHHhcC
Q 033283 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECVS----EFISFITSEASDKCQREKR-KTINGDDLLWAMATLG 99 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~----~FI~~la~~A~~~a~~~~R-kTI~~eDV~~Al~~lg 99 (122)
.++...+..+++..+. .+..++.++...|.+.+. ..++.|-. +...+...++ +.|+.+||..++....
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~-~~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS-ASKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH-THHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH-HHHhcCCCccCccccHHHHHHHhCCCC
Confidence 3455556666665442 346799999888887643 33333333 2223333333 3899999998887543
No 121
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=30.73 E-value=16 Score=30.90 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=38.9
Q ss_pred HhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cchHHHHHHh
Q 033283 42 KKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN--GDDLLWAMAT 97 (122)
Q Consensus 42 K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~--~eDV~~Al~~ 97 (122)
|+++++.--|-+|.+.+|++||...=.||.......-...+++++. -.+|.++|..
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLAT 484 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444468899999999999999999988655544444444443 3567777775
No 122
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=30.22 E-value=35 Score=24.39 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=4.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccChhh
Q 033283 4 EAPASPGGGSHESGEQSPRSNVREQDRYLPIA 35 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~LP~A 35 (122)
.||..|+||-- .--......|+.||..
T Consensus 8 ~~~~~~~~~~~-----g~~~~~~ard~~l~~~ 34 (149)
T 1vyk_A 8 GPPPPLSGGLP-----GTENSDQARDGTLPYT 34 (149)
T ss_dssp CCCCCC-------------------------C
T ss_pred CCCCCCCCCCC-----CcccchhhhccCcccc
Confidence 46667776531 1224566677888874
No 123
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=30.11 E-value=34 Score=26.17 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.5
Q ss_pred CCCCcchHHHHHHhcC
Q 033283 84 KTINGDDLLWAMATLG 99 (122)
Q Consensus 84 kTI~~eDV~~Al~~lg 99 (122)
..|+++||++|++.|.
T Consensus 113 ~~IS~dDi~rAik~L~ 128 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKLK 128 (234)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CccCHHHHHHHHHHHH
Confidence 5799999999998653
No 124
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.84 E-value=87 Score=18.35 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
...-.++.-.|+.+++..+|+.+|+.-=...++..+.
T Consensus 27 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 27 DMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3344455667888888888888776533334444433
No 125
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=29.79 E-value=78 Score=17.73 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=11.8
Q ss_pred hcCCCCCCcchHHHHHHhcCCc
Q 033283 80 REKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 80 ~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
.++.-.|+.+++..+|+.+|+.
T Consensus 18 ~d~~G~i~~~el~~~l~~~g~~ 39 (77)
T 2joj_A 18 TNKTGSIDYHELKVAMRALGFD 39 (77)
T ss_dssp CSSSSEEEHHHHHHHHHHHTCC
T ss_pred CCCCCCCcHHHHHHHHHHhCCC
Confidence 3344455566666666555543
No 126
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=29.73 E-value=65 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCC------------------CCCCcchHHHHHHhcCC
Q 033283 63 VSEFISFITSEASDKCQREKR------------------KTINGDDLLWAMATLGF 100 (122)
Q Consensus 63 a~~FI~~la~~A~~~a~~~~R------------------kTI~~eDV~~Al~~lgf 100 (122)
...|-..|+-+-.++|..... -.|+++||++|++.|.-
T Consensus 88 ~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~ 143 (233)
T 1u5t_A 88 VNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhh
Confidence 368888888888888876543 27999999999997653
No 127
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=29.48 E-value=1.1e+02 Score=19.48 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc--------------CCc-ccHHHHHHHHHHHHHHh
Q 033283 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL--------------GFE-DYIDPLKIYLTRYREVI 118 (122)
Q Consensus 66 FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l--------------gf~-~~~~~l~~~l~~~re~~ 118 (122)
|+.+|...+.+.-.++.++..++.--+.+|+.. ||+ -....|.+.|++|.+..
T Consensus 18 f~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~~c~en 85 (87)
T 2kp7_A 18 FVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQHLASG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHHHHHHc
Confidence 333333333333344444555555555555543 333 35677888888887754
No 128
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.98 E-value=85 Score=18.96 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=43.2
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc---CCcccHHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPL 107 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~~~l 107 (122)
.+...-|.++++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~~t~~e~~~~~~~~d-~~g~i~~~ef~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (110)
T 1pva_A 6 LLKADDIKKALDAVK-AEGSFNHKKFFALVGLKAMSAN-DVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAET 83 (110)
T ss_dssp HSCHHHHHHHHHHTC-STTCCCHHHHHHHHTCTTSCHH-HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHHHHHHHHccCcchHH-HHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHH
Confidence 345566777777653 3445554321111100000000 01235555666777889999999999998 554334445
Q ss_pred HHHHHH
Q 033283 108 KIYLTR 113 (122)
Q Consensus 108 ~~~l~~ 113 (122)
+..++.
T Consensus 84 ~~~~~~ 89 (110)
T 1pva_A 84 KAFLKA 89 (110)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 129
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.94 E-value=70 Score=21.71 Aligned_cols=38 Identities=13% Similarity=-0.043 Sum_probs=30.1
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~~ 114 (122)
....+.|+. -+.+.++.||.+++..+..+.++..+++-
T Consensus 55 ~W~~r~G~~-ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 55 IWKNTEKEN-ATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHHHHCTTT-CCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCC-chHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344455544 57889999999999999999999988754
No 130
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=28.44 E-value=40 Score=21.38 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 75 SDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 75 ~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
....-.++.-+|+.+++..+|+.+|+.
T Consensus 42 F~~~D~d~~G~I~~~El~~~l~~lg~~ 68 (100)
T 2lv7_A 42 FKVFDRDGNGFISKQELGTAMRSLGYM 68 (100)
T ss_dssp HHHTCSSCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHhCCC
Confidence 344555666677777777777777764
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=28.05 E-value=54 Score=24.55 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=39.3
Q ss_pred cChhhHHHHHHHhhCCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 31 YLPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~-~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
.++...+..+++..+.. +..++.++...|.+.+.--+..+-......+.. +..+|+.+||..++...
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~-~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHH-TTTCBCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHh-cCCcccHHHHHHHhCCC
Confidence 35566677777655432 457889988888776544333333333222222 34568888887765543
No 132
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=27.88 E-value=65 Score=18.63 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~~ 114 (122)
...-.++.-.|+.+++..+|..+|..-=...++..++.+
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344456667789999999998888764445555555443
No 133
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=27.85 E-value=22 Score=30.84 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCccccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 033283 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 87 (122)
Q Consensus 24 ~~~~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~ 87 (122)
.+.+-...+|-.... |+++.+.--|-+|.+.||++||...=.||.......-...+++++.
T Consensus 420 ~v~~~st~vp~~~~~---ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~ 480 (621)
T 2q2e_B 420 LIHVASINVPFTSES---KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIIT 480 (621)
T ss_dssp EEEEECSSCCBSSSS---SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTS
T ss_pred EEEEeecCCCcCCcc---hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555654432 5555544478999999999999999999998765544444444443
No 134
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=27.63 E-value=99 Score=18.59 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHhhCCCCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc---CCcccHHHH
Q 033283 32 LPIANISRIMKKALPANGKIAKDA-KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPL 107 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~~~~iskdA-~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~~~~l 107 (122)
+...-|.++++..= .+..|+-+- ..++.. ...-. .-...+....-.++.-+|+.+++..+|..+ |..--...+
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~-~~~~~-~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 82 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGL-KKKSA-DDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKET 82 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTG-GGSCH-HHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhc-CcchH-HHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHH
Confidence 45566777777643 345565432 222210 00000 011334555666777889999999999998 544334445
Q ss_pred HHHHHH
Q 033283 108 KIYLTR 113 (122)
Q Consensus 108 ~~~l~~ 113 (122)
+..++.
T Consensus 83 ~~~~~~ 88 (109)
T 1rwy_A 83 KTLMAA 88 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 135
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=27.60 E-value=1.4e+02 Score=19.83 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHH
Q 033283 46 PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (122)
Q Consensus 46 p~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 111 (122)
|...++|++-..-|.++ ....-.++--+|+.+++..+|+.||+.--...++..+
T Consensus 5 ~~~~~Lt~~qi~elk~~------------F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEA------------FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHHH------------HHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHH------------HHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 44566777665555442 3444455666799999999999988876555555544
No 136
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=27.38 E-value=1.1e+02 Score=19.48 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=21.7
Q ss_pred HHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 78 CQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 78 a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
.-.++.-+|+.+++..+|..+|+.--...++..+.
T Consensus 25 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 25 IDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp HCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred hCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33445567888888888877777544444544443
No 137
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=27.00 E-value=94 Score=17.79 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=21.1
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 111 (122)
...-.++.-.|+.+++..+|+.+|+.-=...++..+
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 333445556677777777777777643333444433
No 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.80 E-value=98 Score=26.42 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=30.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
++|..++.+|.. |.+.|...+-..|.++|++.||=.-
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~ 41 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVRE 41 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 678888888877 5677888899999999999998654
No 139
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=26.56 E-value=37 Score=25.68 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=37.5
Q ss_pred cChhhHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
.++...+.+.+++.+. .+..|+.++...|.+.+.-=+..+..+-.+.+.-.+.++|+.+||...+-
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 4555566655555543 35689999998888765532222333323333322344788877766554
No 140
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=26.18 E-value=1.3e+02 Score=19.06 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 113 (122)
.+....-.++.-.|+.+++..+|..+|..-=...++..++.
T Consensus 87 ~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 87 EAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 35555666777789999999999999864333445544443
No 141
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=26.01 E-value=73 Score=18.47 Aligned_cols=23 Identities=17% Similarity=0.204 Sum_probs=14.9
Q ss_pred HhcCCCCCCcchHHHHHHhcCCc
Q 033283 79 QREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 79 ~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
-.++.-+|+.+++..+|..+|+.
T Consensus 24 D~d~~G~I~~~el~~~l~~~g~~ 46 (86)
T 1j7q_A 24 DRNAENIAPVSDTMDMLTKLGQT 46 (86)
T ss_dssp STTTTSCBCHHHHHHHHHHTSCC
T ss_pred CCCCCCcCcHHHHHHHHHHHcCC
Confidence 34455567777777777777654
No 142
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=25.99 E-value=1.3e+02 Score=19.21 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=7.1
Q ss_pred CCCcchHHHHHHhcCC
Q 033283 85 TINGDDLLWAMATLGF 100 (122)
Q Consensus 85 TI~~eDV~~Al~~lgf 100 (122)
+|+.+++..+|..+|+
T Consensus 44 ~i~~~el~~~l~~~~~ 59 (169)
T 3qrx_A 44 TIDAKELKVAMRALGF 59 (169)
T ss_dssp EECHHHHHHHHHHTSC
T ss_pred cCcHHHHHHHHHHcCC
Confidence 4444444444444443
No 143
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.69 E-value=65 Score=23.08 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=12.1
Q ss_pred CCCCcchHHHHHHhc
Q 033283 84 KTINGDDLLWAMATL 98 (122)
Q Consensus 84 kTI~~eDV~~Al~~l 98 (122)
--|+++|+++|++.|
T Consensus 58 ~lISp~Dl~~A~~~l 72 (169)
T 1u5t_B 58 GLISPMEMREACERF 72 (169)
T ss_dssp CCCCHHHHHHHHTTT
T ss_pred CccCHHHHHHHHHHH
Confidence 378999999998843
No 144
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=25.22 E-value=33 Score=19.16 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.2
Q ss_pred CCCCcchHHHHHHhcCCc
Q 033283 84 KTINGDDLLWAMATLGFE 101 (122)
Q Consensus 84 kTI~~eDV~~Al~~lgf~ 101 (122)
..++.++|..+++++||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 457888999999999985
No 145
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.10 E-value=57 Score=28.47 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
++|..+..+|.. |...|...+-..|.++|++.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 678888888877 56778888999999999999983
No 146
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.09 E-value=1.6e+02 Score=23.69 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 32 LPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~------~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
+-...|.+-+...+.. ...+|..+..+|.. |...|..-+...|..+||+.||=.-
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~S~~~~~vL~~------------A~~~A~~~g~~~I~teHLLlaLl~~ 115 (468)
T 3pxg_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (468)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHhc
Confidence 3445556666655532 23578888888877 5667778889999999999998643
No 147
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=24.97 E-value=1.3e+02 Score=19.17 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
.|....-.++.-+|+.+++..+|..+|..-=...++..+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455555667778999999999999986433444444444
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=24.83 E-value=81 Score=22.78 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHhcCCC-CCCcchHHHHHHhcCC
Q 033283 49 GKIAKDAKETVQECVSE------------FISFITSE----ASDKCQREKRK-TINGDDLLWAMATLGF 100 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~------------FI~~la~~----A~~~a~~~~Rk-TI~~eDV~~Al~~lgf 100 (122)
..++.++...|.+.+.. ....+-.. +.+.+...+++ +|+.+||..+++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46899999999887632 22222211 11222223332 5999999999987643
No 149
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=24.26 E-value=49 Score=20.89 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCCCCccccccChhhHHHHHH
Q 033283 11 GGSHESGEQSPRSNVREQDRYLPIANISRIM 41 (122)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d~~LP~A~V~Ri~ 41 (122)
|+|-..|++++.+ .-...+.+|...|.+||
T Consensus 1 ~~~g~~~~~~~~~-~~~~~i~Ip~~~vG~II 30 (92)
T 1x4n_A 1 GSSGSSGHQQQRS-VMTEEYKVPDGMVGFII 30 (92)
T ss_dssp CCCCCCCCCCCCC-CEEEEEEEEHHHHHHHH
T ss_pred CCCCCCCCCCCCC-CEEEEEEEChHHcceeE
Confidence 3455555555543 34455889987666654
No 150
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.11 E-value=2.4e+02 Score=21.49 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=33.5
Q ss_pred ccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHh------------cCCCCCCcchHHHHHHhcC
Q 033283 49 GKIAKDAKETVQECVSE----FISFITSEASDKCQR------------EKRKTINGDDLLWAMATLG 99 (122)
Q Consensus 49 ~~iskdA~~al~~~a~~----FI~~la~~A~~~a~~------------~~RkTI~~eDV~~Al~~lg 99 (122)
..++.+....|.+.+.- -|..|..+|...+.+ ...+.|+.+|+..|+++..
T Consensus 269 ~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp BCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred CCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 45777777777765432 455666666555544 2346899999999998754
No 151
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=24.03 E-value=1.6e+02 Score=19.49 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 74 A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
+....-.++.-+|+.+++..+|+.+|+.. ..++..+.
T Consensus 44 ~F~~~D~d~~G~i~~~El~~~l~~~g~~~--~~~~~~~~ 80 (180)
T 3mse_B 44 LFYKLDTNHNGSLSHREIYTVLASVGIKK--WDINRILQ 80 (180)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCCH--HHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCH--HHHHHHHH
Confidence 44555566777899999999999999863 44444443
No 152
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=23.90 E-value=96 Score=17.85 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=6.9
Q ss_pred CCCCcchHHHHHHhcC
Q 033283 84 KTINGDDLLWAMATLG 99 (122)
Q Consensus 84 kTI~~eDV~~Al~~lg 99 (122)
-.|+.+++..+|..+|
T Consensus 26 G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 26 GKISSSELGDALKTLG 41 (86)
T ss_dssp SEEEHHHHHHHHHTTT
T ss_pred CCcCHHHHHHHHHHcC
Confidence 3444444444444444
No 153
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=33 Score=22.35 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=9.6
Q ss_pred CcchHHHHHHhcCCcc
Q 033283 87 NGDDLLWAMATLGFED 102 (122)
Q Consensus 87 ~~eDV~~Al~~lgf~~ 102 (122)
+.+||..-|+.+||++
T Consensus 31 s~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEE 46 (103)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHcCCCh
Confidence 3456666666666655
No 154
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=23.63 E-value=1.6e+02 Score=24.54 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=35.5
Q ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 45 LPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 45 lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
.|..-++++|-..-|.+ +.+..-.++.-+|+.+++..+|+.||+.-=...++..++
T Consensus 290 ePs~E~Lt~EEI~ELRE------------aF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKE------------AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp CCBCBCCCHHHHHHHHH------------HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHH------------HHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34445677766666655 344555666777888888888888887644444554444
No 155
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=23.48 E-value=1.9e+02 Score=20.03 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=41.7
Q ss_pred ccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-CCCCCCcchHHHHHHhcCC--cccHHHHHHHHHH
Q 033283 49 GKIAKDAKETVQEC-------VSEFISFITSEASDKCQRE-KRKTINGDDLLWAMATLGF--EDYIDPLKIYLTR 113 (122)
Q Consensus 49 ~~iskdA~~al~~~-------a~~FI~~la~~A~~~a~~~-~RkTI~~eDV~~Al~~lgf--~~~~~~l~~~l~~ 113 (122)
..++.|-+.-|.+- +.+-|..+=..|++..++. +-+.|+.+|+-.+-+++.= +.|+..+...+..
T Consensus 31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~ 105 (121)
T 3lf9_A 31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAA 105 (121)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444433 3334666667788766655 4467999998888776653 5788877777653
No 156
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=23.07 E-value=1.2e+02 Score=18.90 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=25.9
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 113 (122)
...-.++.-.|+.+++..+|..+|..-=...++..+..
T Consensus 83 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 83 ACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp TTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33344666789999999999999865444455554443
No 157
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.99 E-value=1.6e+02 Score=25.02 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 50 ~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.+|..++.+|.+ |...+...+...|+.+|++.||=.
T Consensus 79 ~~s~~~~~vl~~------------A~~~a~~~~~~~I~~ehlLlall~ 114 (758)
T 1r6b_X 79 QPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (758)
T ss_dssp EECHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHTT
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCEeeHHHHHHHHhc
Confidence 567877777776 456666668888999999988754
No 158
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.91 E-value=1.1e+02 Score=18.19 Aligned_cols=25 Identities=8% Similarity=0.255 Sum_probs=16.3
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCC
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf 100 (122)
...-.++.-.|+.+++..+|..+|+
T Consensus 34 ~~~D~d~~G~I~~~El~~~l~~~g~ 58 (91)
T 2pmy_A 34 AACDANRSGRLEREEFRALCTELRV 58 (91)
T ss_dssp HHHCTTCSSSEEHHHHHHHHHHTTC
T ss_pred HHHCCCCCCCCcHHHHHHHHHHcCc
Confidence 3444555566777777777777774
No 159
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=22.69 E-value=1.7e+02 Score=24.96 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc
Q 033283 32 LPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (122)
Q Consensus 32 LP~A~V~Ri~K~~lp~------~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l 98 (122)
+....+.+-+.+.+.. ...+|..++.+|.. |...|..-+...|..+||+.||=+-
T Consensus 55 vd~~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~------------A~~~A~~~~~~~I~~ehlLlall~~ 115 (758)
T 3pxi_A 55 LGSEKIQKEVESLIGRGQEMSQTIHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIRE 115 (758)
T ss_dssp CCHHHHHHHHHTTSCCCCTTCSSCEECHHHHHHHHH------------HHHHHHTTTCSSBCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhc
Confidence 3445566666655532 23578888888877 5667788899999999999998643
No 160
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.54 E-value=63 Score=27.49 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 033283 51 IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (122)
Q Consensus 51 iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~ 96 (122)
+|+.+..+|.. |...|...+-..|.++|++.||=
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaLl 35 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLALL 35 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHHT
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 45666666665 67778888999999999999873
No 161
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=22.52 E-value=1.3e+02 Score=19.39 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~ 113 (122)
.|....-.++.-+|+.+++..+|..+|..--...++..+..
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 45666777888899999999999999987666666665554
No 162
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=22.28 E-value=42 Score=19.08 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.8
Q ss_pred CCCcchHHHHHHhcCCc
Q 033283 85 TINGDDLLWAMATLGFE 101 (122)
Q Consensus 85 TI~~eDV~~Al~~lgf~ 101 (122)
.++.++|..+++++||.
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 46788999999999986
No 163
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.27 E-value=1.5e+02 Score=18.60 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 74 A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
+....-.++.-.|+.+++..+|+.+|..--...++..++
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445555667778999999999999987544445554444
No 164
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.27 E-value=1.5e+02 Score=18.52 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=20.9
Q ss_pred HhcC-CCCCCcchHHHHHHhcCCcccHHHHHHHH
Q 033283 79 QREK-RKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (122)
Q Consensus 79 ~~~~-RkTI~~eDV~~Al~~lgf~~~~~~l~~~l 111 (122)
-.++ .-+|+.+++..+|+.+|+.--...++..+
T Consensus 24 D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 57 (146)
T 2qac_A 24 NEKSSGGKISIDNASYNARKLGLAPSSIDEKKIK 57 (146)
T ss_dssp HHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CccCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445 55788888888888887754444444433
No 165
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.23 E-value=63 Score=24.87 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 033283 2 AAEAPASPGGGSHESGE 18 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (122)
|-||-|||-||.|+.++
T Consensus 196 AMNPVDHPHGGg~~~~G 212 (239)
T 3j21_B 196 KMNAVNHPFGGKEHHPG 212 (239)
T ss_dssp TSCTTTCSSCCSSSSCS
T ss_pred eeccccCCCCCCCCCCC
Confidence 56899999999555444
No 166
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.07 E-value=1.8e+02 Score=19.39 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
+|....-.++.-+|+.+++..+|..+|..-=...++..++
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~ 128 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4566666777788999999999999997544444544443
No 167
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.99 E-value=68 Score=21.90 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 74 ASDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 74 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
+....-.++.-+|+.+++..+|+.+|+.
T Consensus 57 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 57 TFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 3344455677789999999999998875
No 168
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=21.93 E-value=96 Score=22.43 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=38.3
Q ss_pred cChhhHHHHHHHhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHh
Q 033283 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp-~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~ 97 (122)
.++...+.++++..+. .+..++.++...|.+.+.--+..+-......+.. ...|+.+||..++..
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~ 225 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITAT 225 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCC
Confidence 3456666666665543 2467899998888876543333333333333322 346888888776553
No 169
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=21.93 E-value=1.9e+02 Score=19.43 Aligned_cols=40 Identities=10% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 73 ~A~~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
.+....-.++.-+|+.+++..++..+|..-=...++..+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~~ 136 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMR 136 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4555566677778999999999998886433333444333
No 170
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=21.80 E-value=63 Score=21.96 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHH
Q 033283 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (122)
Q Consensus 76 ~~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~ 112 (122)
......|++--+.++++.||+++++..-.+.++..+.
T Consensus 63 ~W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~ 99 (112)
T 1ich_A 63 TWRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALC 99 (112)
T ss_dssp HHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 4566777888889999999999999888888877764
No 171
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=21.63 E-value=1.1e+02 Score=24.40 Aligned_cols=69 Identities=7% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CcchHHHHHHhcCCcccHHHHHHHHHHHH
Q 033283 45 LPANGK---IAKDAKETVQECVSEFISFITSEASDKCQREKRKTI-NGDDLLWAMATLGFEDYIDPLKIYLTRYR 115 (122)
Q Consensus 45 lp~~~~---iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI-~~eDV~~Al~~lgf~~~~~~l~~~l~~~r 115 (122)
+|...+ ++.|-.+-+...-+..-.|+-....+.-... + .. .-+..++-|+.+|+++|++..+..+++|+
T Consensus 462 ~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 462 IPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp CCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 554343 7777777666666655555555444444433 2 22 25677888999999999999999999986
No 172
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.62 E-value=1.7e+02 Score=18.78 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=11.1
Q ss_pred cCCCCCCcchHHHHHHhcCC
Q 033283 81 EKRKTINGDDLLWAMATLGF 100 (122)
Q Consensus 81 ~~RkTI~~eDV~~Al~~lgf 100 (122)
++--+|+.+++..+|..+|+
T Consensus 37 d~~G~i~~~el~~~l~~~g~ 56 (166)
T 2mys_B 37 NADGIIDKDDLRETFAAMGR 56 (166)
T ss_pred CCCCcCCHHHHHHHHHHhCC
Confidence 34445666666666655555
No 173
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.57 E-value=40 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=14.3
Q ss_pred CCcchHHHHHHhcCCc
Q 033283 86 INGDDLLWAMATLGFE 101 (122)
Q Consensus 86 I~~eDV~~Al~~lgf~ 101 (122)
++..|++++|+..||.
T Consensus 5 ~~~~elik~L~~~G~~ 20 (70)
T 1whz_A 5 PRPEEVARKLRRLGFV 20 (70)
T ss_dssp CCHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHCCCE
Confidence 6789999999999995
No 174
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.38 E-value=94 Score=18.59 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=23.5
Q ss_pred cChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHH
Q 033283 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (122)
Q Consensus 31 ~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~F 66 (122)
.+..++|.|++... ..|+.+.+.-|.+++.++
T Consensus 20 GVS~sTVSr~ln~~----~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 20 KVSTATVSRALMNP----DKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TCCHHHHHHTTTCC----CCSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 57788888877632 358888888888877764
No 175
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=21.22 E-value=1.2e+02 Score=17.08 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 033283 37 ISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76 (122)
Q Consensus 37 V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~ 76 (122)
|+.+|-.-. |...-..|...+|-+....||..+..+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556666554 455678899999999999999999998865
No 176
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=20.87 E-value=57 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=26.8
Q ss_pred HhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Q 033283 42 KKALPANGKIAKDAKETVQECVSEFISFITSEAS 75 (122)
Q Consensus 42 K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~ 75 (122)
|+++++.--|-+|.+.+|++||...=.||.....
T Consensus 428 k~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~ 461 (471)
T 1mu5_A 428 KESIAEVEDIEKEIKNALMEVARKLKQYLSEKRK 461 (471)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444568899999999999999999988544
No 177
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC; 1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A* 2ym0_A
Probab=20.80 E-value=38 Score=27.12 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=39.2
Q ss_pred cccccChhhHHHHHHHhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHhc---CCccc
Q 033283 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDY 103 (122)
Q Consensus 27 ~~d~~LP~A~V~Ri~K~~lp~~~~iskdA~~al~~~a~~FI~~la~~A~~~a~~~~RkTI~~eDV~~Al~~l---gf~~~ 103 (122)
.|+..|-+-...--+|.....+..+|.+-.++|+.+-..=-.++.+.|-.. .+|.||++.|+...++.+ -=.+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~is~aElw~~I~~~I~~Ik~dY 114 (308)
T 3nzz_A 38 NDERTLARQQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSALFSASPMA---QPRTTISDAEIWDMVSQNISAIGDSY 114 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCC------------------------HHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHhhCCCchhhcccCccc---CCCCcccHHHHHHHHHHHHHHHHHhH
Confidence 344555554444334433334567999999999887554444555544443 689999999988877732 11455
Q ss_pred HHHHHHHHHHHHHH
Q 033283 104 IDPLKIYLTRYREV 117 (122)
Q Consensus 104 ~~~l~~~l~~~re~ 117 (122)
+.--...++.|-++
T Consensus 115 ldvYa~IVk~YTdy 128 (308)
T 3nzz_A 115 LGVYENVVAVYTDF 128 (308)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 178
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.58 E-value=1.5e+02 Score=18.27 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCCCCcchHHHHHHhcCCc
Q 033283 74 ASDKCQREKRKTINGDDLLWAMATLGFE 101 (122)
Q Consensus 74 A~~~a~~~~RkTI~~eDV~~Al~~lgf~ 101 (122)
|+-++...+...++.+||...|+..|.+
T Consensus 7 A~Lll~~~g~~~~ta~~I~~il~aaGve 34 (70)
T 2lbf_B 7 SYLLAALGGNSSPSAKDIKKILDSVGIE 34 (70)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHcCCC
Confidence 5667777788899999999999987774
No 179
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=20.35 E-value=45 Score=21.14 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=29.6
Q ss_pred HHHhcCCCCCCcchHHHHHHhcCCcccHHHHHHHHHHHHHHhc
Q 033283 77 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREVIC 119 (122)
Q Consensus 77 ~a~~~~RkTI~~eDV~~Al~~lgf~~~~~~l~~~l~~~re~~~ 119 (122)
+...++++.++.+.|...|++-|+. .-...+.+||+.++
T Consensus 29 I~~Ed~~kPlSD~~I~~~L~~~Gi~----IaRRTVaKYRe~l~ 67 (76)
T 2ahq_A 29 VENEDKRKPYSDQEIANILKEKGFK----VARRTVAKYREMLG 67 (76)
T ss_dssp GGGCCSSSCCCHHHHHHHHTTTSSC----CCHHHHHHHHHHTC
T ss_pred HHhcCCCCCCCHHHHHHHHHHcCCC----ccHHHHHHHHHHcC
Confidence 4566778899999999999888775 34566777887765
No 180
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=20.30 E-value=99 Score=17.41 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=3.7
Q ss_pred CccccHH
Q 033283 48 NGKIAKD 54 (122)
Q Consensus 48 ~~~iskd 54 (122)
+..|+.+
T Consensus 17 ~G~i~~~ 23 (78)
T 1k9u_A 17 DGKISLS 23 (78)
T ss_dssp SSEECHH
T ss_pred CCcCcHH
Confidence 3466653
No 181
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=87 Score=19.19 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.0
Q ss_pred CCCcchHHHHHHhcCCcccHHHHHH
Q 033283 85 TINGDDLLWAMATLGFEDYIDPLKI 109 (122)
Q Consensus 85 TI~~eDV~~Al~~lgf~~~~~~l~~ 109 (122)
....++|..-|+.+|+++|.+....
T Consensus 9 ~~~~~~V~~WL~~lgL~~Y~~~F~~ 33 (80)
T 2eam_A 9 RCPVQTVGQWLESIGLPQYENHLMA 33 (80)
T ss_dssp CCCCCCHHHHHHHHTCGGGHHHHHH
T ss_pred CCChhHHHHHHHHCCCHHHHHHHHH
Confidence 4567899999999999999776543
Done!