Query 033288
Match_columns 122
No_of_seqs 109 out of 1052
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00178 60S ribosomal protein 100.0 2.2E-41 4.8E-46 258.7 9.1 118 1-119 52-176 (181)
2 TIGR01038 L22_arch ribosomal p 100.0 3.3E-41 7.1E-46 251.4 8.7 102 1-103 49-150 (150)
3 PRK04223 rpl22p 50S ribosomal 100.0 7.2E-40 1.6E-44 244.9 8.9 101 1-104 53-153 (153)
4 COG0091 RplV Ribosomal protein 100.0 2E-31 4.4E-36 192.5 6.0 79 26-104 40-119 (120)
5 CHL00034 rpl22 ribosomal prote 100.0 9.1E-30 2E-34 183.0 6.3 78 26-103 39-117 (117)
6 PRK00565 rplV 50S ribosomal pr 100.0 1.3E-29 2.8E-34 180.6 6.1 79 26-104 32-111 (112)
7 TIGR01044 rplV_bact ribosomal 100.0 1.5E-29 3.3E-34 177.9 5.6 75 26-100 28-103 (103)
8 KOG3353 60S ribosomal protein 100.0 1.6E-30 3.4E-35 197.8 0.2 111 2-113 47-157 (175)
9 PF00237 Ribosomal_L22: Riboso 99.9 3.1E-28 6.7E-33 170.7 4.4 77 26-102 28-105 (105)
10 PRK12279 50S ribosomal protein 99.9 4.9E-27 1.1E-31 191.9 6.0 82 26-107 32-115 (311)
11 cd00336 Ribosomal_L22 Ribosoma 99.9 1.8E-26 3.9E-31 161.6 6.1 75 26-100 30-105 (105)
12 KOG1711 Mitochondrial/chloropl 99.7 5.1E-18 1.1E-22 132.7 6.0 84 26-109 101-186 (218)
13 KOG4824 Apolipoprotein D/Lipoc 28.1 32 0.0007 27.5 1.2 36 26-65 161-196 (224)
14 COG3812 Uncharacterized protei 26.6 40 0.00086 26.1 1.4 31 40-70 44-74 (193)
15 PF08212 Lipocalin_2: Lipocali 26.5 62 0.0014 23.0 2.4 36 26-65 106-141 (143)
16 PF11694 DUF3290: Protein of u 24.5 1.5E+02 0.0032 22.1 4.1 34 43-76 80-113 (149)
No 1
>PTZ00178 60S ribosomal protein L17; Provisional
Probab=100.00 E-value=2.2e-41 Score=258.67 Aligned_cols=118 Identities=68% Similarity=1.063 Sum_probs=109.0
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|++|||+|||+||||+++..+ |+...|+||+|+|..|+|+|+||++||+++|+|+|+|||+||.||+|+++||++|
T Consensus 52 i~~k~~VPf~r~~~~vgh~~~~~~-~~~~~GR~P~KaA~~i~KlL~SA~aNAe~~gld~d~L~I~~i~v~kG~~lKR~~p 130 (181)
T PTZ00178 52 LAKKRCVPFRRFNGGVGRTAQAKE-FGHTQGRWPEKSVKFVLSLLKNAEANAEAKGLDVEKLVISHVQVNRAPRGRRRTY 130 (181)
T ss_pred HhccccccceeecCCccccccccc-cccccCcCcHHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCcccCCCCC
Confidence 578999999999999999999977 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeecccccc-------CCcchhhhhhc
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEEPVK-------KEPETQLATSK 119 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~~~~-------~~~~~~~~~~~ 119 (122)
||+||+++|++++|||||+|+|.+..++ ++...|||.|+
T Consensus 131 RA~GRA~~i~k~t~HI~Ivl~e~~~~~~~~~~~~~~~~~~~~~~~~ 176 (181)
T PTZ00178 131 RAHGRINPFMSSPCHIELIATEKDETVPKPKEAPKKQTKKQLARSK 176 (181)
T ss_pred ccCCCcCcccCCceeEEEEEEEcccccccchhhhhhhhHHHHHHHH
Confidence 9999999999999999999999876665 34445666665
No 2
>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal). This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.
Probab=100.00 E-value=3.3e-41 Score=251.44 Aligned_cols=102 Identities=54% Similarity=0.799 Sum_probs=99.2
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||++|++|+||++|+++ ++|..|+||+|+|..|+|+|+||++||+++|||+|+|||++|+||+||++||++|
T Consensus 49 ~~~k~~vPf~r~~~~~g~~~~~~~-~~~~~gR~P~Kaa~~i~klL~sA~aNA~~~gld~d~L~I~~i~vnkg~~~kR~~p 127 (150)
T TIGR01038 49 IEMKRAVPFRRYNGKVGHRRGLKE-WGWTAGRYPVKAAKFILKVLQNAEANAEYKGLDVEKLVIIHIQANKGPKIRRWMP 127 (150)
T ss_pred HhcccccceeeecCCccccccccc-cccccCCCchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCccCCCCC
Confidence 578999999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeec
Q 033288 81 RAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~ 103 (122)
||+||+++|++++|||+|+|+|+
T Consensus 128 rA~GRa~~~~k~~~HI~Iil~e~ 150 (150)
T TIGR01038 128 RAFGRATPYNSSPTHIELVVEEK 150 (150)
T ss_pred ccCCCCCcccCCCceEEEEEecC
Confidence 99999999999999999999874
No 3
>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed
Probab=100.00 E-value=7.2e-40 Score=244.90 Aligned_cols=101 Identities=42% Similarity=0.578 Sum_probs=97.3
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||++|++|+||++|+ +++..|+||+|+|++|+|+|+||++||+++|||+|+|||++|+||+||++||++|
T Consensus 53 ~~~k~~vPf~r~~~~~g~~~~~---~~~~~gr~PkKaa~~i~KlL~sA~aNA~~~gld~d~L~I~~i~v~kg~~~kR~~p 129 (153)
T PRK04223 53 IALKRAVPFKRHNKKVGHRKGI---DGWPAGRYPVKAAKAFLKLLENAEANAEYKGLDTEKLVIVHIAAHKGRVIKGYMP 129 (153)
T ss_pred HhcccccceeeecCCccccccc---cccccCCCchHHHHHHHHHHHHHHHHHHhcCCChhHeEEEEEEECCCCCCCCcCc
Confidence 5789999999999999999998 6779999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeecc
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
||+||++++++++|||||+|+|.+
T Consensus 130 rA~GRa~~~~k~~sHI~Iil~e~~ 153 (153)
T PRK04223 130 RAFGRATPKNTETVNIEVILEEVE 153 (153)
T ss_pred ccCCCCCcccCCCceEEEEEEeCC
Confidence 999999999999999999999853
No 4
>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-31 Score=192.49 Aligned_cols=79 Identities=37% Similarity=0.431 Sum_probs=75.7
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeecc
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
+..+|.|+|+|+|+.|+|+|+||++||++ +|||+|+|||+||+||+||++||++|||+||+++|.+|+|||||+|+|.+
T Consensus 40 A~~~L~~~pkKaa~~v~KvL~sA~aNAe~n~gLd~d~L~V~~i~v~~gp~lKR~~pRA~GRa~~i~k~tshItvvv~e~~ 119 (120)
T COG0091 40 ALAILEFVPKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVREKE 119 (120)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHhhHHhccCCChHHEEEEEEEeCCCceeeeecccccCccccccCCCceEEEEEeecC
Confidence 55679999999999999999999999998 59999999999999999999999999999999999999999999999864
No 5
>CHL00034 rpl22 ribosomal protein L22
Probab=99.96 E-value=9.1e-30 Score=182.96 Aligned_cols=78 Identities=29% Similarity=0.401 Sum_probs=74.7
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhH-HcCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeec
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~-~kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~ 103 (122)
+..+|.|+|+|+|+.|+|+|+||++||+ ++|+|+|+|||.+|+||+||++||++||||||++++++++|||+|+|+|.
T Consensus 39 A~~~L~~~pkk~a~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~G~~~KR~~prArGRa~~i~k~~sHI~Vvl~e~ 117 (117)
T CHL00034 39 ALMILEFMPYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI 117 (117)
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHHHHHHccCCCccceEEEEEEECCCCccCCCCcccCCCCCcccCCCccEEEEEecC
Confidence 6788999999999999999999999996 46999999999999999999999999999999999999999999999873
No 6
>PRK00565 rplV 50S ribosomal protein L22; Reviewed
Probab=99.96 E-value=1.3e-29 Score=180.57 Aligned_cols=79 Identities=32% Similarity=0.403 Sum_probs=76.5
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeecc
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
+..+|.|||+|+|+.|+++|+||++||++ .|+|+|+|||.+++||+|+++||++||||||++++++++|||+|+|+|.+
T Consensus 32 A~~~L~~~pkk~a~~i~k~L~sA~aNA~~~~g~d~~~L~I~~~~v~~G~~~Kr~~~rArGR~~~i~k~~~hi~vvL~e~~ 111 (112)
T PRK00565 32 ALAILKFSPKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKE 111 (112)
T ss_pred HHHHHHHCcHhHHHHHHHHHHHHHHHHHhccCCChhHeEEEEEEECCCCccCCCCCCcCCCCCccccCCccEEEEEEecC
Confidence 77899999999999999999999999998 69999999999999999999999999999999999999999999999864
No 7
>TIGR01044 rplV_bact ribosomal protein L22, bacterial type. This model decribes bacterial and chloroplast ribosomal protein L22.
Probab=99.96 E-value=1.5e-29 Score=177.93 Aligned_cols=75 Identities=31% Similarity=0.346 Sum_probs=72.4
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEe
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 100 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl 100 (122)
+..+|.|||+|+|+.|+|+|+||++||++ .|+|+|+|||+|++||+|+++||++||||||++++++++|||+|+|
T Consensus 28 A~~~L~f~pkk~a~~i~klL~sA~aNA~~~~~ld~~~L~I~~~~v~~G~~~kr~~~rarGRa~~i~k~~~hi~vvl 103 (103)
T TIGR01044 28 ALDILRFTPKKAAPLIKKVLASAIANAEHNYGLDADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103 (103)
T ss_pred HHHHHhhCCHhHHHHHHHHHHHHHHHHHHccCCChHheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEeC
Confidence 67889999999999999999999999974 6999999999999999999999999999999999999999999986
No 8
>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-30 Score=197.76 Aligned_cols=111 Identities=69% Similarity=1.058 Sum_probs=108.3
Q ss_pred CCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeeec
Q 033288 2 AHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYR 81 (122)
Q Consensus 2 ~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~pR 81 (122)
.+++|+||.+|++|+|+++|+++ |++.+++||+|+|++++.+|+||.+||+.+|+|+|.|+|+|+.||++|.|.|.++|
T Consensus 47 ~~~~c~p~~~~~~g~g~~~q~k~-~~~~~~rwpkksaefll~~LkN~esnaElkgldVDsLvIehiqvnkApKm~~rtyr 125 (175)
T KOG3353|consen 47 LQKICVPFRRYNGGVGRTAQAKQ-WGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYR 125 (175)
T ss_pred hhcccccceecCCCcCccchhhh-hccccCcccchHHHHHHHHHHhhhhcccccCcCcceeEeeehhhcccchhhhHHHH
Confidence 46899999999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCCeeEEEEeeeccccccCCcch
Q 033288 82 AHGRINPYMSSPCHIELTLSEKEEPVKKEPET 113 (122)
Q Consensus 82 ArGRa~~i~k~~sHI~ivl~E~~~~~~~~~~~ 113 (122)
|+||.+++.+.+|||++||.|+++++++++|+
T Consensus 126 aHg~in~y~ssP~hie~il~~ke~~v~k~e~~ 157 (175)
T KOG3353|consen 126 AHGRINPYMSSPCHIEMILTEKEQIVPKPEEE 157 (175)
T ss_pred hhcccccccCChHHHHHHHHhhcccCCChhhh
Confidence 99999999999999999999999999999986
No 9
>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....
Probab=99.94 E-value=3.1e-28 Score=170.69 Aligned_cols=77 Identities=47% Similarity=0.562 Sum_probs=74.8
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhH-HcCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeee
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAE-VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSE 102 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~-~kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E 102 (122)
+..+|.|+|+|+|..|+++|+||.+||+ ++|+|+|+|||++++||+|+++||++||||||++++++++|||+|+|+|
T Consensus 28 A~~~L~~~~~k~a~~i~k~L~~a~~nA~~~~g~d~~~L~I~~~~v~~g~~~kr~~~rArGR~~~~~k~~~hi~vvl~E 105 (105)
T PF00237_consen 28 AIAQLKFVPKKAAKFILKLLKSAIANAENNKGLDPDNLYISEIWVNKGPYLKRIRPRARGRAGPIRKRTSHITVVLKE 105 (105)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHCTSTCGGEEEEEEEEEEEEEEEEEEEECTTEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHhCcHHHHHHHHhhHHHHHhhcccccccccCceEEEEEEEEecccccCCCcCcCCCccCeecCceEEEEEEeC
Confidence 5678999999999999999999999999 6799999999999999999999999999999999999999999999997
No 10
>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional
Probab=99.93 E-value=4.9e-27 Score=191.87 Aligned_cols=82 Identities=30% Similarity=0.381 Sum_probs=77.6
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhH--HcCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeec
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAE--VKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~--~kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~ 103 (122)
+..+|.|+|+|+|..|+|||+||+|||+ +.|||+|+|||.+|+||+|+++||++||||||+++|++++|||||+|+|.
T Consensus 32 Al~~L~~~PkKaA~~I~KlLkSA~ANAe~~n~gld~d~L~I~~~~VdkGp~lKR~~PRArGRA~~i~KrtsHItIvl~e~ 111 (311)
T PRK12279 32 AIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDD 111 (311)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCCChhHeEEEEEEECCCCcccCCCCccCCCCCcccCCCccEEEEEecC
Confidence 7889999999999999999999999999 46999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 033288 104 EEPV 107 (122)
Q Consensus 104 ~~~~ 107 (122)
..+.
T Consensus 112 ~~~~ 115 (311)
T PRK12279 112 VNER 115 (311)
T ss_pred Cchh
Confidence 6543
No 11
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Probab=99.93 E-value=1.8e-26 Score=161.62 Aligned_cols=75 Identities=48% Similarity=0.616 Sum_probs=71.9
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHc-CCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEe
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 100 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~k-gld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl 100 (122)
+..+|.|+|+|+|..|+++|+||.+||+++ ++|+|+|||++++||+||++||++||||||++++++++|||+|+|
T Consensus 30 A~~~L~~~~kk~a~~i~k~l~sa~~nA~~~~~~~~~~L~I~~~~v~~g~~~kr~~~rarGR~~~~~k~~~hi~ivl 105 (105)
T cd00336 30 ALAQLEFVPKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105 (105)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhHHHcCCCCccceEEEEEEECCCCcccCCCcCCCCCCcccccCceeEEEeC
Confidence 678899999999999999999999999987 567999999999999999999999999999999999999999986
No 12
>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.1e-18 Score=132.65 Aligned_cols=84 Identities=29% Similarity=0.315 Sum_probs=79.1
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHc-CCCCCceEE-EEEEeccCceeceeeecCCCcccccccCCeeEEEEeeec
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYI-SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~k-gld~d~L~I-~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~ 103 (122)
++++|.|+++|+|+.|.++|.+|.+||.++ |+|+++||| .++++++|.++||+.++||||.++|++++|||+|+|.|.
T Consensus 101 AL~Ql~~s~kK~a~~i~~~l~~A~~nA~~~~gl~~~~l~v~~~~t~~~g~~~Krl~~hargr~~ii~~~yvhi~v~L~e~ 180 (218)
T KOG1711|consen 101 ALMQLEFSDKKAAKTIAEVLLSARANAVHNHGLDPDSLLVVAEATVGQGNELKRLKVHARGRFGIIRRPYVHIFVKLEEG 180 (218)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHhhhHHhcCCCccceEEEEeeecccchhhhheeeeccCcccceecceeeEEEEEeec
Confidence 889999999999999999999999999865 999999999 999999999999999999999999999999999999998
Q ss_pred cccccC
Q 033288 104 EEPVKK 109 (122)
Q Consensus 104 ~~~~~~ 109 (122)
.-+...
T Consensus 181 s~~~~~ 186 (218)
T KOG1711|consen 181 SPPQQR 186 (218)
T ss_pred CCCchh
Confidence 765443
No 13
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=28.09 E-value=32 Score=27.47 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=27.9
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEE
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIS 65 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~ 65 (122)
+.|+|++.|.-.-+.+.|+-.- +...|+|+++|.++
T Consensus 161 f~wIlsRtpn~epEt~~klkn~----l~~~gyDpeKl~~T 196 (224)
T KOG4824|consen 161 FLWILSRTPNMEPETIAKLKNK----LAEEGYDPEKLHDT 196 (224)
T ss_pred eEEEEecCCCCChHHHHHHHHH----HHHcCCCHHHhccC
Confidence 7899999999888877776543 34568999998875
No 14
>COG3812 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.60 E-value=40 Score=26.07 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHcCCCCCceEEEEEEec
Q 033288 40 FILDLLKNAESNAEVKGLDVDALYISHIQVN 70 (122)
Q Consensus 40 ~ilklL~sA~aNA~~kgld~d~L~I~~i~v~ 70 (122)
-+..+|.-|.+||+.+++|++.|.-....-|
T Consensus 44 ~Ls~vL~kaaa~aeak~~D~~~~l~aRLaPD 74 (193)
T COG3812 44 NLSAVLAKAAAHAEAKKIDPQVLLTARLAPD 74 (193)
T ss_pred HHHHHHHHHHHhHHhhcCCHHHHHhhhcCcc
Confidence 3456778889999999999998765544433
No 15
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=26.46 E-value=62 Score=22.95 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=22.8
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEE
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIS 65 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~ 65 (122)
.+|+|.+.|.=....+.+ +++-|+..|+|+++|...
T Consensus 106 ~~WILsR~p~~~~~~~~~----~~~~~~~~G~d~~~l~~~ 141 (143)
T PF08212_consen 106 YLWILSRTPQLSEETYAE----ILDRAKQQGYDVSKLIWT 141 (143)
T ss_dssp EEEEEESSSS--HHHHHH----HHHHHHHTT--GGGEEE-
T ss_pred EEEEEeCCCCCCHHHHHH----HHHHHHHcCCCHHHeEEC
Confidence 689999999966655444 445566679999998753
No 16
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.52 E-value=1.5e+02 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHHHHhhHHcCCCCCceEEEEEEeccCceec
Q 033288 43 DLLKNAESNAEVKGLDVDALYISHIQVNQAQKQR 76 (122)
Q Consensus 43 klL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~K 76 (122)
.++.-...=|+..++++++++|..-....|...|
T Consensus 80 ~~~~fi~~vA~~~~V~~~~v~VNst~l~dG~iVk 113 (149)
T PF11694_consen 80 QMVHFIESVAKDLGVSKEEVYVNSTALTDGMIVK 113 (149)
T ss_pred HHHHHHHHHHHHhCCChheEEEecccccCCeEEE
Confidence 4444455667888999999999999999998654
Done!