Query 033288
Match_columns 122
No_of_seqs 109 out of 1052
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_Q RPL17, 60S ribosomal pr 100.0 8.7E-47 3E-51 287.8 9.5 113 1-114 54-166 (183)
2 3iz5_V 60S ribosomal protein L 100.0 4.4E-47 1.5E-51 287.0 6.2 119 1-119 52-170 (171)
3 3u5e_P L20A, YL17, 60S ribosom 100.0 3.4E-46 1.2E-50 284.9 9.8 112 1-113 52-163 (184)
4 2zkr_r 60S ribosomal protein L 100.0 8.3E-46 2.8E-50 282.8 7.3 113 1-114 52-164 (184)
5 1vq8_R 50S ribosomal protein L 100.0 7E-44 2.4E-48 265.9 6.3 102 1-105 52-153 (155)
6 3j21_S 50S ribosomal protein L 100.0 9.9E-43 3.4E-47 259.7 6.6 100 1-104 55-154 (155)
7 2ftc_M Mitochondrial ribosomal 100.0 1.3E-32 4.5E-37 194.6 6.8 80 26-105 28-109 (110)
8 3r8s_S 50S ribosomal protein L 100.0 8.2E-33 2.8E-37 195.6 4.6 78 26-103 32-110 (110)
9 2zjr_P 50S ribosomal protein L 100.0 5.5E-32 1.9E-36 197.5 4.3 80 26-105 53-133 (134)
10 1i4j_A 50S ribosomal protein L 100.0 8.4E-31 2.9E-35 185.3 5.0 77 26-105 32-109 (110)
11 3bbo_U Ribosomal protein L22; 100.0 2.3E-30 7.9E-35 199.3 5.5 83 26-108 61-144 (199)
12 3shg_B VBHA; ampylation, adeny 31.9 35 0.0012 21.2 2.6 22 43-64 12-33 (61)
13 1qwd_A Outer membrane lipoprot 21.8 56 0.0019 23.0 2.5 35 26-64 137-171 (177)
No 1
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=8.7e-47 Score=287.81 Aligned_cols=113 Identities=56% Similarity=0.874 Sum_probs=103.3
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||++||+||||++|+++ |+|..|+||+|||++|++||+||++||+++|||+|+|||+||+||+||+++|++|
T Consensus 54 ~~~K~~vPfrrynggvg~~~q~k~-~g~~~Gr~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~hi~Vnkgp~~kR~~p 132 (183)
T 4a17_Q 54 IDRKRCIPFTRFTGCIGRTAQAHE-FGRTQGRWPVKSVKVILGLLDNLSANAQAKSLNTANLVIQHGQVNRAQKGRRRTY 132 (183)
T ss_dssp HTTSSCEECCSCCTTCCBCGGGGG-TTCSBEECCHHHHHHHHHHHHHHHHHTTTTTCCSTTEEEEEEEEEECCCEEEEEE
T ss_pred HhcccccceeeecCCcccchhhhh-cCCccCcCcHHHHHHHHHHHHHHHHHHHhcCCChhheEEEEEEECCCCcccCcCc
Confidence 478999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeeccccccCCcchh
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQ 114 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~~~~~~~~~~ 114 (122)
||+||++||++++|||||+|+|++++||+++|..
T Consensus 133 RA~GRa~pi~k~~~HIeiil~Eke~~v~k~~~~~ 166 (183)
T 4a17_Q 133 RAHGRINPYLNSGCHVEIFAQEVAAKVRKEAPKD 166 (183)
T ss_dssp ETTTEEEEEEECCEEEEEEEEECCCC--------
T ss_pred cCCCCcCCccCCCCCEEEEEeeccccCcCchhhh
Confidence 9999999999999999999999999999988764
No 2
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=4.4e-47 Score=287.00 Aligned_cols=119 Identities=88% Similarity=1.356 Sum_probs=113.7
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||+||++||||++|++++|+|..|+||+|+|++|++||+||++||+++|||+|+|||+||+||+||++||++|
T Consensus 52 ~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~kglD~d~L~I~~i~vnkgp~~kR~~p 131 (171)
T 3iz5_V 52 IAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTY 131 (171)
T ss_dssp HHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEECCCBCCEEE
T ss_pred HhcccccceeeecCCccccccccccccccccCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEeccCCcccCCCC
Confidence 46899999999999999999999559999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeeccccccCCcchhhhhhc
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQLATSK 119 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~~~~~~~~~~~~~~~ 119 (122)
||+||+++|++++|||||+|+|++++||+++|+.+.+.+
T Consensus 132 RA~GRa~p~~k~~~HI~vil~E~~~~v~k~~~~~~~~~~ 170 (171)
T 3iz5_V 132 RAHGRINPYMSSPCHIELILSEKEEPVKKEPESQIAARK 170 (171)
T ss_dssp ETTTEEEECCBCEEEEEEEEETTHHHHTTTTCCSSCCCC
T ss_pred CCCCCCCcccCCCccEEEEEeecCccCCCchhhhhhhcc
Confidence 999999999999999999999999999999998776543
No 3
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=3.4e-46 Score=284.90 Aligned_cols=112 Identities=63% Similarity=0.959 Sum_probs=109.3
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||++||+||||++|+++ |+|..|+||+|+|++|++||+||++||+++|||+|+|||+||+||+||++||++|
T Consensus 52 ~~~k~~VPf~rf~~gvg~~~q~~~-~g~~~GR~PkKaa~~ilklLksA~aNAe~kgLD~d~L~I~~i~Vnkgp~~kR~~p 130 (184)
T 3u5e_P 52 LDHQRAIPFRRFNSSIGRTAQGKE-FGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTY 130 (184)
T ss_dssp HTTSSCEECCSSCTTCCCCGGGGG-GTCSCEECCHHHHHHHHHHHHHHHHHHHHTTCCTTTEEEEEEEEEECCCEEEEEE
T ss_pred HhcccccceeeecCCCcccchhhc-cCCccCCCchHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCCcccCCCC
Confidence 478999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeeccccccCCcch
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEEPVKKEPET 113 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~~~~~~~~~ 113 (122)
||+||+++|++++|||||+|+|++++||+++|.
T Consensus 131 RA~GRa~p~~k~~~HI~vil~E~e~~v~k~~~~ 163 (184)
T 3u5e_P 131 RAHGRINKYESSPSHIELVVTEKEEAVAKAAEK 163 (184)
T ss_dssp EGGGEEEEEEECCEEEEEEEEECCCCCCCCCCC
T ss_pred CCCCCCCcccCCCccEEEEEeeccccCCCcHHH
Confidence 999999999999999999999999999998875
No 4
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=8.3e-46 Score=282.77 Aligned_cols=113 Identities=68% Similarity=1.038 Sum_probs=98.2
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||+|||+||||++|+++ |+|..|+||+|+|++|++||+||++||+++|||+|+|||+||+||+||++||++|
T Consensus 52 ~~~k~~VPF~r~~~gvg~~~q~~~-~~~~~GR~PkKaa~~ilklLksA~aNAe~kglD~d~L~I~~i~Vnkg~~~kR~~p 130 (184)
T 2zkr_r 52 TLQKQCVPFRRYNGGVGRCAQAKQ-WGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTY 130 (184)
T ss_dssp HHTSSCEECSSSCTTCCBCCSTTS-CSCSBEECCHHHHHHHHHHHHHHHHHHHHHTSCTTTCEEEEEEEC-CCCEEEEEE
T ss_pred HhccccccceeccCCCcccccccc-cccccCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccCcCCCC
Confidence 468999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeeccccccCCcchh
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEEPVKKEPETQ 114 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~~~~~~~~~~ 114 (122)
||+||+++|++++|||||+|+|.++.+++++|+.
T Consensus 131 RA~GRa~p~~k~~~HI~vil~E~~~~v~k~~~~~ 164 (184)
T 2zkr_r 131 RAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEV 164 (184)
T ss_dssp ETTTEEEEEEEC-CCEEEEEECC-----------
T ss_pred CCCCCCCCccCCCceEEEEEEEcCccCCCchhhh
Confidence 9999999999999999999999999999987764
No 5
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=7e-44 Score=265.89 Aligned_cols=102 Identities=35% Similarity=0.573 Sum_probs=97.8
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||+|||+||||++|+ |+|..|+||+|+|++|++||+||++||+++|||+|+|||+||+||+||++||++|
T Consensus 52 ~~~k~~vPf~r~~~gvg~~~~~---~~~~~gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~v~kg~~~kR~~p 128 (155)
T 1vq8_R 52 IEGDQPVPFKQHNSGVGHKSKV---DGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKP 128 (155)
T ss_dssp HHTSSCEECSSSCTTCCBCTTC---SSSSBEECCHHHHHHHHHHHHHHHHHHHHTTSCGGGSEEEEEEEEEEEEECCEEE
T ss_pred HhcceeccceeccCCCCccccc---cccccCCCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEECCCccccCCCC
Confidence 4689999999999999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeeccc
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKEE 105 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~~ 105 (122)
||+||+++|++++|||||+|+|.++
T Consensus 129 RA~GRa~~~~k~~~HI~vil~E~~~ 153 (155)
T 1vq8_R 129 RAMGRASAWNSPQVDVELILEEPEV 153 (155)
T ss_dssp CGGGCEEECCEEEEEEEEEEECC--
T ss_pred CCCCCCCceeCCCccEEEEEEecCC
Confidence 9999999999999999999999764
No 6
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=9.9e-43 Score=259.70 Aligned_cols=100 Identities=37% Similarity=0.544 Sum_probs=97.2
Q ss_pred CCCcccceeeeecCCCCcchhhhccCccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEEEEEEeccCceeceeee
Q 033288 1 MAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTY 80 (122)
Q Consensus 1 i~kk~~VPf~ry~~~v~~~~~~~~~~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I~~i~v~kG~~~KR~~p 80 (122)
|++|+||||++||+||||++| |+|..|+||+|+|++|++||+||++||+++|||+|+|||+||+||+||++||++|
T Consensus 55 ~~~k~~vPf~r~~~gvg~~~~----~~~~~gr~PkKaa~~ilklL~sA~aNAe~kgld~d~L~I~~i~vnkgp~~kR~~p 130 (155)
T 3j21_S 55 IALKRPVPLKRYNDSQGHKPG----KGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYP 130 (155)
T ss_dssp HHTCSCEECCSSCTTCCBCCS----SSCSBEECCHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEEEECCEEE
T ss_pred HhcccceeeeeecCCCccccc----cCCCcCcCcHHHHHHHHHHHHHHHHHHHHcCCChhheEEEEEEecCCCcccCCCC
Confidence 468999999999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccccCCeeEEEEeeecc
Q 033288 81 RAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 81 RArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
||+||+++|++++|||||+|+|.+
T Consensus 131 RA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 131 RAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp CSTTCEEECCEEEEEEEEEEECCC
T ss_pred CCCCCCCceecCCccEEEEEEecc
Confidence 999999999999999999999976
No 7
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=99.97 E-value=1.3e-32 Score=194.59 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=77.2
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCC-CCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeec
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLD-VDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld-~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~ 103 (122)
++.+|.|||+|+|++|+|+|+||++||++ +||| +|+|||++|+||+||++||++||||||+++|++++|||||+|+|.
T Consensus 28 Al~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR~~prA~GRa~~i~k~~~HI~vvl~e~ 107 (110)
T 2ftc_M 28 ALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVEG 107 (110)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCcccCCCCCCCCCCCccccCCccEEEEEEeC
Confidence 77899999999999999999999999997 6999 899999999999999999999999999999999999999999998
Q ss_pred cc
Q 033288 104 EE 105 (122)
Q Consensus 104 ~~ 105 (122)
++
T Consensus 108 ~~ 109 (110)
T 2ftc_M 108 PP 109 (110)
T ss_pred CC
Confidence 75
No 8
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=99.97 E-value=8.2e-33 Score=195.64 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=75.7
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHc-CCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeec
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEK 103 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~k-gld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~ 103 (122)
+..+|.|||+|+|++|+++|+||++||+++ |+|+|+|||++|+||+||++||++||||||+++|++++|||||+|+|+
T Consensus 32 Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 32 ALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCCccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 678899999999999999999999999987 999999999999999999999999999999999999999999999985
No 9
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=99.97 E-value=5.5e-32 Score=197.50 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=76.9
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeecc
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
++.+|.|||+|+|.+|+++|+||++||++ +|||+|+|||++|+||+||++||++||||||+++|++++|||||+|+|.+
T Consensus 53 Al~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~Gp~lKR~~pRA~GRa~~i~k~tsHItvvl~E~~ 132 (134)
T 2zjr_P 53 AEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKG 132 (134)
T ss_dssp HHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECC
T ss_pred HHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCccccCCCCCCCCCCcccccCCceEEEEEEecC
Confidence 77889999999999999999999999995 69999999999999999999999999999999999999999999999975
Q ss_pred c
Q 033288 105 E 105 (122)
Q Consensus 105 ~ 105 (122)
+
T Consensus 133 ~ 133 (134)
T 2zjr_P 133 N 133 (134)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=99.96 E-value=8.4e-31 Score=185.32 Aligned_cols=77 Identities=26% Similarity=0.268 Sum_probs=74.2
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHc-CCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeecc
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVK-GLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~k-gld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
++.+|.|||+|+|++|+++|+||++||+++ |||+|+|||++|+||+||+ ++||||||+++|++++|||||+|+|.+
T Consensus 32 Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~~---~~pRA~GRa~~i~k~~~HItvvl~e~~ 108 (110)
T 1i4j_A 32 ARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGPA---VLPRARGRADIIKKRTSHITVILGEKH 108 (110)
T ss_dssp HHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEEE---ECSCSSSCCCSCCEEEEEEEEEEEESS
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCCe---EeecCCCCCcccccCCeeEEEEEEecC
Confidence 678899999999999999999999999987 9999999999999999999 999999999999999999999999975
Q ss_pred c
Q 033288 105 E 105 (122)
Q Consensus 105 ~ 105 (122)
+
T Consensus 109 ~ 109 (110)
T 1i4j_A 109 G 109 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.96 E-value=2.3e-30 Score=199.26 Aligned_cols=83 Identities=24% Similarity=0.280 Sum_probs=79.3
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHH-cCCCCCceEEEEEEeccCceeceeeecCCCcccccccCCeeEEEEeeecc
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEV-KGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKE 104 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~-kgld~d~L~I~~i~v~kG~~~KR~~pRArGRa~~i~k~~sHI~ivl~E~~ 104 (122)
+..+|.|+|+++|.+|+++|+||++||++ +|+|+|+|||++|+||+||++||++||||||+++|++++|||||+|+|.+
T Consensus 61 Al~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkGp~lKR~~pRArGRa~~I~KrtsHItVVL~E~~ 140 (199)
T 3bbo_U 61 TLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDIT 140 (199)
T ss_dssp TTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBCCCCCCCCCSSSSCSCCCCCCCBCCCCEEECCC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeCC
Confidence 88999999999999999999999999998 59999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 033288 105 EPVK 108 (122)
Q Consensus 105 ~~~~ 108 (122)
++.+
T Consensus 141 ~~~~ 144 (199)
T 3bbo_U 141 HFDS 144 (199)
T ss_dssp CCCC
T ss_pred chHH
Confidence 6543
No 12
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=31.92 E-value=35 Score=21.17 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHHHHhhHHcCCCCCceEE
Q 033288 43 DLLKNAESNAEVKGLDVDALYI 64 (122)
Q Consensus 43 klL~sA~aNA~~kgld~d~L~I 64 (122)
+.+++|++|-...||+||..++
T Consensus 12 ~avq~Aian~RLEGLEpd~~~l 33 (61)
T 3shg_B 12 RDARNALASQRLEGLEPDPQVV 33 (61)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHhhhhccCCCCHHHH
Confidence 6788899988888999987543
No 13
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=21.81 E-value=56 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=25.3
Q ss_pred CccccCCCchhhhHHHHHHHHHHHHhhHHcCCCCCceEE
Q 033288 26 HPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYI 64 (122)
Q Consensus 26 ~~~~l~~~pkKaA~~ilklL~sA~aNA~~kgld~d~L~I 64 (122)
.+|+|.+.|.-....+.++ .+-|+..|+|.++|..
T Consensus 137 ~~wILsR~p~l~~~~~~~~----~~~~~~~G~d~~~l~~ 171 (177)
T 1qwd_A 137 YLWILSRTPTISDEVKQEM----LAVATREGFDVSKFIW 171 (177)
T ss_dssp CEEEEESSSSCCHHHHHHH----HHHHHHTTCCGGGCEE
T ss_pred EEEEEECCCCCCHHHHHHH----HHHHHHcCCCHHHeEE
Confidence 6889999998665544443 4445677999999975
Done!